Query 009827
Match_columns 524
No_of_seqs 453 out of 3981
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 9.2E-90 3.1E-94 751.9 52.0 509 3-518 92-612 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.3E-58 4.6E-63 508.4 27.3 494 5-515 30-607 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 6E-57 2E-61 493.8 32.2 492 5-515 25-586 (702)
4 2zj8_A DNA helicase, putative 100.0 2.6E-54 8.8E-59 474.2 24.8 491 5-515 23-596 (720)
5 4f92_B U5 small nuclear ribonu 100.0 2.1E-42 7.2E-47 403.0 25.6 485 8-502 82-668 (1724)
6 4f92_B U5 small nuclear ribonu 100.0 1.6E-41 5.5E-46 395.5 29.7 486 8-501 929-1499(1724)
7 3fht_A ATP-dependent RNA helic 100.0 5.4E-41 1.9E-45 345.0 23.5 318 6-349 48-381 (412)
8 3l9o_A ATP-dependent RNA helic 100.0 3.1E-41 1E-45 380.8 21.5 328 3-349 182-599 (1108)
9 3eiq_A Eukaryotic initiation f 100.0 1.3E-41 4.6E-46 349.8 16.0 313 5-351 62-391 (414)
10 3pey_A ATP-dependent RNA helic 100.0 1.9E-40 6.5E-45 338.7 24.4 319 5-350 27-359 (395)
11 3o8b_A HCV NS3 protease/helica 100.0 2.7E-41 9.1E-46 357.3 17.4 297 3-350 215-517 (666)
12 2db3_A ATP-dependent RNA helic 100.0 7E-40 2.4E-44 338.6 25.4 308 6-348 79-408 (434)
13 1s2m_A Putative ATP-dependent 100.0 2.7E-39 9.1E-44 331.2 26.1 311 6-351 44-369 (400)
14 2j0s_A ATP-dependent RNA helic 100.0 6.9E-40 2.4E-44 336.7 21.1 312 6-351 60-387 (410)
15 3fmp_B ATP-dependent RNA helic 100.0 8.3E-41 2.8E-45 350.6 14.3 316 7-349 116-448 (479)
16 1xti_A Probable ATP-dependent 100.0 3.7E-39 1.3E-43 329.1 25.1 311 6-349 31-359 (391)
17 2v1x_A ATP-dependent DNA helic 100.0 7.4E-40 2.5E-44 348.4 20.0 310 6-351 45-378 (591)
18 2z83_A Helicase/nucleoside tri 100.0 4.2E-40 1.4E-44 341.7 16.9 293 13-347 14-313 (459)
19 1hv8_A Putative ATP-dependent 100.0 4.4E-39 1.5E-43 325.3 24.0 310 5-351 28-349 (367)
20 4a4z_A Antiviral helicase SKI2 100.0 1.3E-40 4.3E-45 372.7 13.5 326 3-346 37-491 (997)
21 2jlq_A Serine protease subunit 100.0 4.8E-40 1.6E-44 340.8 15.6 292 12-345 11-309 (451)
22 2i4i_A ATP-dependent RNA helic 100.0 9.1E-39 3.1E-43 329.1 21.8 312 6-351 38-387 (417)
23 2xgj_A ATP-dependent RNA helic 100.0 1.3E-38 4.6E-43 356.3 21.1 325 4-347 85-499 (1010)
24 2whx_A Serine protease/ntpase/ 100.0 7.7E-39 2.6E-43 341.6 17.9 298 3-345 172-476 (618)
25 1fuu_A Yeast initiation factor 100.0 1.2E-39 4E-44 333.0 9.8 314 5-351 43-370 (394)
26 3fho_A ATP-dependent RNA helic 100.0 3.2E-39 1.1E-43 340.0 13.3 316 6-347 142-470 (508)
27 3i5x_A ATP-dependent RNA helic 100.0 6E-38 2E-42 335.5 21.2 319 6-351 95-453 (563)
28 3sqw_A ATP-dependent RNA helic 100.0 1E-37 3.6E-42 334.1 21.2 318 6-350 44-401 (579)
29 1oyw_A RECQ helicase, ATP-depe 100.0 3E-38 1E-42 332.7 16.6 304 7-351 27-347 (523)
30 3rc3_A ATP-dependent RNA helic 100.0 5.8E-38 2E-42 335.8 18.4 315 18-377 153-476 (677)
31 2z0m_A 337AA long hypothetical 100.0 2.2E-37 7.4E-42 309.3 20.9 296 5-345 16-321 (337)
32 2ykg_A Probable ATP-dependent 100.0 3.7E-38 1.3E-42 345.7 15.8 345 4-374 12-552 (696)
33 1yks_A Genome polyprotein [con 100.0 5E-37 1.7E-41 316.7 19.6 288 16-345 4-297 (440)
34 4a2p_A RIG-I, retinoic acid in 100.0 9.2E-37 3.1E-41 325.8 21.4 331 1-351 3-512 (556)
35 2v6i_A RNA helicase; membrane, 100.0 1.6E-36 5.5E-41 312.3 20.0 283 19-344 1-287 (431)
36 3oiy_A Reverse gyrase helicase 100.0 5.4E-37 1.8E-41 315.6 15.9 299 4-348 20-366 (414)
37 3tbk_A RIG-I helicase domain; 100.0 2.5E-36 8.5E-41 322.3 19.6 329 2-351 1-511 (555)
38 1wp9_A ATP-dependent RNA helic 100.0 7E-36 2.4E-40 313.0 21.1 317 4-351 8-479 (494)
39 2wv9_A Flavivirin protease NS2 100.0 5E-36 1.7E-40 321.8 18.0 286 18-345 239-531 (673)
40 4a2q_A RIG-I, retinoic acid in 100.0 7.7E-35 2.6E-39 322.7 21.9 328 4-351 247-753 (797)
41 4gl2_A Interferon-induced heli 100.0 4.5E-36 1.5E-40 329.3 8.1 318 2-344 4-515 (699)
42 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-33 3.6E-38 317.0 21.3 327 4-351 247-753 (936)
43 1gm5_A RECG; helicase, replica 100.0 4.8E-35 1.6E-39 317.9 8.6 300 4-345 367-695 (780)
44 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-33 6E-38 317.5 13.4 269 4-302 77-388 (1104)
45 2eyq_A TRCF, transcription-rep 100.0 5.7E-32 1.9E-36 307.1 24.3 299 6-348 604-923 (1151)
46 2fwr_A DNA repair protein RAD2 100.0 1.4E-32 4.7E-37 287.6 11.2 294 4-351 92-458 (472)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 2.6E-32 8.8E-37 308.2 11.6 264 8-302 59-353 (1054)
48 2oca_A DAR protein, ATP-depend 100.0 2.1E-32 7.3E-37 289.0 9.0 302 5-345 113-453 (510)
49 1tf5_A Preprotein translocase 100.0 3.2E-29 1.1E-33 267.3 18.6 306 7-348 85-546 (844)
50 3h1t_A Type I site-specific re 100.0 2.4E-29 8.3E-34 270.1 17.5 300 5-337 178-545 (590)
51 2fsf_A Preprotein translocase 100.0 4.8E-28 1.6E-32 257.5 18.4 108 211-348 439-584 (853)
52 3i4u_A ATP-dependent RNA helic 100.0 1.8E-28 6.1E-33 233.2 13.4 136 383-522 5-142 (270)
53 3llm_A ATP-dependent RNA helic 100.0 1.5E-27 5.1E-32 225.5 17.2 172 3-177 59-235 (235)
54 1nkt_A Preprotein translocase 99.9 3.2E-27 1.1E-31 251.4 19.9 306 7-349 113-619 (922)
55 3eaq_A Heat resistant RNA depe 99.9 1.8E-27 6.2E-32 220.8 7.7 173 201-404 19-211 (212)
56 3dmq_A RNA polymerase-associat 99.9 9.4E-27 3.2E-31 261.1 14.8 316 3-350 151-618 (968)
57 3i32_A Heat resistant RNA depe 99.9 1.2E-26 4E-31 225.4 5.8 174 205-409 20-213 (300)
58 1z63_A Helicase of the SNF2/RA 99.9 1.3E-24 4.3E-29 228.9 15.3 309 5-351 37-457 (500)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 5.8E-24 2E-28 236.9 20.2 310 6-345 272-707 (1038)
60 1c4o_A DNA nucleotide excision 99.9 1.6E-21 5.6E-26 210.0 24.8 115 212-349 438-552 (664)
61 3jux_A Protein translocase sub 99.9 2.6E-21 8.8E-26 201.9 22.3 165 151-348 410-588 (822)
62 1z3i_X Similar to RAD54-like; 99.9 2.1E-20 7.3E-25 201.5 23.1 113 211-351 414-532 (644)
63 3mwy_W Chromo domain-containin 99.9 3.5E-21 1.2E-25 212.8 16.2 313 4-351 235-688 (800)
64 2rb4_A ATP-dependent RNA helic 99.9 1.7E-21 5.7E-26 175.1 11.1 130 200-351 21-151 (175)
65 2hjv_A ATP-dependent RNA helic 99.8 1.6E-21 5.5E-26 173.0 9.9 116 208-351 30-146 (163)
66 1fuk_A Eukaryotic initiation f 99.8 2.1E-21 7.1E-26 172.7 8.5 120 204-351 21-141 (165)
67 2d7d_A Uvrabc system protein B 99.8 7.4E-21 2.5E-25 204.9 12.9 115 212-349 444-558 (661)
68 1t5i_A C_terminal domain of A 99.8 4.7E-21 1.6E-25 171.5 9.0 118 203-348 21-139 (172)
69 2jgn_A DBX, DDX3, ATP-dependen 99.8 9.9E-21 3.4E-25 171.4 8.4 112 212-351 45-157 (185)
70 1qde_A EIF4A, translation init 99.8 8.4E-20 2.9E-24 170.9 14.0 174 5-180 36-219 (224)
71 3iuy_A Probable ATP-dependent 99.8 6.5E-20 2.2E-24 172.2 12.8 166 5-172 42-223 (228)
72 2p6n_A ATP-dependent RNA helic 99.8 3.2E-20 1.1E-24 168.8 9.0 117 202-347 44-161 (191)
73 1vec_A ATP-dependent RNA helic 99.8 3.4E-19 1.2E-23 164.4 16.1 165 5-171 25-201 (206)
74 2oxc_A Probable ATP-dependent 99.8 1.5E-19 5.1E-24 169.9 13.3 170 6-176 47-227 (230)
75 3fmo_B ATP-dependent RNA helic 99.8 2.2E-19 7.5E-24 175.4 14.5 171 6-177 115-297 (300)
76 1q0u_A Bstdead; DEAD protein, 99.8 8.4E-20 2.9E-24 170.3 10.9 171 5-177 26-211 (219)
77 2yjt_D ATP-dependent RNA helic 99.7 2.8E-21 9.4E-26 172.8 0.0 118 205-350 22-140 (170)
78 3ber_A Probable ATP-dependent 99.8 1.4E-19 4.8E-24 172.1 11.2 170 5-176 65-246 (249)
79 1t6n_A Probable ATP-dependent 99.8 1E-18 3.5E-23 163.0 16.4 168 6-175 37-218 (220)
80 3dkp_A Probable ATP-dependent 99.8 7E-19 2.4E-23 167.0 14.9 173 6-179 52-242 (245)
81 3bor_A Human initiation factor 99.8 4.6E-19 1.6E-23 167.4 12.9 169 6-176 53-233 (237)
82 3fe2_A Probable ATP-dependent 99.8 2.3E-19 7.7E-24 170.1 10.4 171 6-178 52-238 (242)
83 2pl3_A Probable ATP-dependent 99.8 4.3E-19 1.5E-23 167.5 12.0 173 5-179 47-234 (236)
84 3ly5_A ATP-dependent RNA helic 99.8 3.9E-19 1.3E-23 170.4 11.2 155 6-163 77-245 (262)
85 2gxq_A Heat resistant RNA depe 99.8 1.3E-18 4.3E-23 160.7 14.1 170 5-176 23-204 (207)
86 1wrb_A DJVLGB; RNA helicase, D 99.7 1.2E-17 4.2E-22 159.2 12.8 171 6-178 46-240 (253)
87 3b6e_A Interferon-induced heli 99.7 3.2E-17 1.1E-21 152.2 10.6 156 3-159 31-216 (216)
88 2vl7_A XPD; helicase, unknown 99.7 1.1E-16 3.9E-21 168.8 14.7 126 200-343 372-518 (540)
89 2ipc_A Preprotein translocase 99.7 3E-15 1E-19 159.3 19.6 117 7-128 81-213 (997)
90 1rif_A DAR protein, DNA helica 99.6 7.1E-16 2.4E-20 149.4 7.8 150 4-162 112-264 (282)
91 2fz4_A DNA repair protein RAD2 99.6 1.4E-14 4.9E-19 136.2 13.3 138 4-162 92-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.5 3.2E-12 1.1E-16 135.3 25.8 312 4-342 2-527 (551)
93 1z5z_A Helicase of the SNF2/RA 99.4 2E-13 7E-18 130.6 6.2 113 212-351 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 99.1 4.5E-10 1.5E-14 119.9 13.9 174 152-343 377-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.4 9.7E-07 3.3E-11 94.1 10.4 141 8-159 152-298 (608)
96 2pcj_A ABC transporter, lipopr 98.3 4.5E-06 1.5E-10 77.1 11.0 62 97-159 138-199 (224)
97 3gfo_A Cobalt import ATP-bindi 98.2 9.8E-07 3.4E-11 84.0 5.8 144 17-161 31-205 (275)
98 3tif_A Uncharacterized ABC tra 98.2 4.5E-06 1.5E-10 77.7 10.2 63 97-160 143-206 (235)
99 3tui_C Methionine import ATP-b 98.2 5.9E-07 2E-11 88.5 3.8 62 99-161 163-225 (366)
100 1vpl_A ABC transporter, ATP-bi 98.2 1E-06 3.5E-11 83.1 4.9 69 97-168 144-212 (256)
101 1sgw_A Putative ABC transporte 98.2 1.3E-06 4.5E-11 79.9 4.9 141 17-161 32-194 (214)
102 3e1s_A Exodeoxyribonuclease V, 98.1 4.6E-06 1.6E-10 88.0 8.5 125 5-157 189-313 (574)
103 3ec2_A DNA replication protein 98.1 8.5E-06 2.9E-10 72.4 8.7 27 19-45 37-63 (180)
104 2ff7_A Alpha-hemolysin translo 98.1 1.8E-06 6.2E-11 81.0 4.2 62 98-161 144-205 (247)
105 2nq2_C Hypothetical ABC transp 98.1 1.9E-05 6.6E-10 74.2 11.1 148 17-169 28-196 (253)
106 1g6h_A High-affinity branched- 98.1 1.1E-06 3.7E-11 83.1 2.1 64 97-161 151-214 (257)
107 2olj_A Amino acid ABC transpor 98.0 2.4E-05 8.2E-10 73.9 11.2 70 97-169 157-226 (263)
108 4g1u_C Hemin import ATP-bindin 98.0 3.4E-06 1.2E-10 80.0 4.9 150 17-169 34-215 (266)
109 3nh6_A ATP-binding cassette SU 98.0 1.3E-06 4.4E-11 84.4 1.8 59 99-159 190-248 (306)
110 3rlf_A Maltose/maltodextrin im 98.0 2E-05 6.7E-10 78.1 10.0 137 17-160 26-194 (381)
111 2ixe_A Antigen peptide transpo 98.0 4.5E-06 1.5E-10 79.4 5.2 63 97-160 154-217 (271)
112 1ji0_A ABC transporter; ATP bi 98.0 3.3E-06 1.1E-10 78.9 4.1 63 97-160 137-199 (240)
113 1z47_A CYSA, putative ABC-tran 98.0 4E-05 1.4E-09 75.3 11.9 69 97-168 143-212 (355)
114 3fvq_A Fe(3+) IONS import ATP- 98.0 4.2E-05 1.4E-09 75.2 11.8 63 97-160 136-199 (359)
115 3upu_A ATP-dependent DNA helic 98.0 1E-05 3.6E-10 83.2 7.8 64 6-69 26-94 (459)
116 2yz2_A Putative ABC transporte 98.0 2.9E-05 9.9E-10 73.6 10.2 64 97-161 136-199 (266)
117 2ihy_A ABC transporter, ATP-bi 97.9 2.4E-05 8.2E-10 74.6 9.2 63 97-160 159-223 (279)
118 2pze_A Cystic fibrosis transme 97.9 9.3E-06 3.2E-10 75.2 5.7 140 17-160 31-190 (229)
119 1b0u_A Histidine permease; ABC 97.9 2E-06 6.8E-11 81.5 1.0 68 98-168 152-219 (262)
120 2it1_A 362AA long hypothetical 97.9 4.8E-05 1.6E-09 75.1 10.5 62 98-160 132-194 (362)
121 2yyz_A Sugar ABC transporter, 97.9 4.9E-05 1.7E-09 74.9 10.5 62 98-160 132-194 (359)
122 2qi9_C Vitamin B12 import ATP- 97.9 4.5E-06 1.5E-10 78.3 2.9 148 17-169 23-200 (249)
123 3b5x_A Lipid A export ATP-bind 97.9 3.8E-05 1.3E-09 81.5 10.5 142 17-160 366-539 (582)
124 1mv5_A LMRA, multidrug resista 97.9 1.1E-05 3.6E-10 75.6 5.4 62 97-160 137-198 (243)
125 1v43_A Sugar-binding transport 97.9 1.8E-06 6.1E-11 85.6 -0.1 61 99-160 141-202 (372)
126 2pjz_A Hypothetical protein ST 97.9 1E-05 3.5E-10 76.5 4.8 131 17-160 28-185 (263)
127 2cbz_A Multidrug resistance-as 97.9 2.2E-05 7.6E-10 73.0 7.0 141 17-161 28-190 (237)
128 2onk_A Molybdate/tungstate ABC 97.9 3.2E-05 1.1E-09 72.1 8.0 63 97-160 124-187 (240)
129 1g29_1 MALK, maltose transport 97.8 9.6E-05 3.3E-09 73.3 11.9 62 98-160 138-200 (372)
130 3d31_A Sulfate/molybdate ABC t 97.8 3.1E-05 1.1E-09 76.1 8.2 140 17-160 23-188 (348)
131 2kjq_A DNAA-related protein; s 97.8 3.8E-05 1.3E-09 65.9 7.6 27 19-45 35-61 (149)
132 2d2e_A SUFC protein; ABC-ATPas 97.8 3.6E-06 1.2E-10 79.2 1.1 60 100-160 144-203 (250)
133 2zu0_C Probable ATP-dependent 97.8 5.5E-05 1.9E-09 71.7 9.3 60 100-160 165-224 (267)
134 3qf4_A ABC transporter, ATP-bi 97.8 4.6E-05 1.6E-09 80.8 9.5 141 17-160 366-538 (587)
135 2w0m_A SSO2452; RECA, SSPF, un 97.8 3.5E-05 1.2E-09 71.2 7.6 41 16-56 19-59 (235)
136 2ghi_A Transport protein; mult 97.8 9.4E-06 3.2E-10 76.7 3.0 61 98-160 154-214 (260)
137 3qf4_B Uncharacterized ABC tra 97.8 1.1E-05 3.9E-10 85.7 3.9 143 17-161 378-551 (598)
138 1oxx_K GLCV, glucose, ABC tran 97.8 1.5E-06 5.2E-11 85.7 -2.9 62 98-160 139-201 (353)
139 2b8t_A Thymidine kinase; deoxy 97.7 0.00015 5E-09 66.5 10.3 115 18-158 10-124 (223)
140 3j16_B RLI1P; ribosome recycli 97.7 0.00011 3.7E-09 77.8 10.4 64 96-160 218-281 (608)
141 2bbs_A Cystic fibrosis transme 97.7 3.2E-05 1.1E-09 74.1 5.4 140 17-160 61-219 (290)
142 3b60_A Lipid A export ATP-bind 97.7 1.4E-05 4.6E-10 84.9 3.0 62 98-161 479-540 (582)
143 4gp7_A Metallophosphoesterase; 97.7 1.3E-05 4.6E-10 70.5 2.1 23 17-39 6-28 (171)
144 1cr0_A DNA primase/helicase; R 97.6 0.00017 5.8E-09 69.5 9.8 42 11-52 26-67 (296)
145 4a82_A Cystic fibrosis transme 97.6 1.1E-05 3.9E-10 85.4 1.6 60 99-160 477-536 (578)
146 3ozx_A RNAse L inhibitor; ATP 97.6 6.4E-05 2.2E-09 78.5 7.1 140 17-160 291-446 (538)
147 3kl4_A SRP54, signal recogniti 97.6 0.00027 9.4E-09 71.2 11.3 124 20-160 97-223 (433)
148 2pt7_A CAG-ALFA; ATPase, prote 97.6 0.0002 6.7E-09 70.1 10.0 115 12-163 163-278 (330)
149 1yqt_A RNAse L inhibitor; ATP- 97.6 0.00018 6.2E-09 75.2 10.2 63 97-160 156-218 (538)
150 1yqt_A RNAse L inhibitor; ATP- 97.6 0.00012 4.1E-09 76.6 8.8 144 17-169 309-469 (538)
151 2yl4_A ATP-binding cassette SU 97.6 1.8E-05 6.2E-10 84.2 2.2 61 98-160 482-542 (595)
152 3gd7_A Fusion complex of cysti 97.6 7.5E-05 2.6E-09 74.4 6.2 59 100-160 156-214 (390)
153 3j16_B RLI1P; ribosome recycli 97.6 0.00049 1.7E-08 72.8 12.6 138 19-160 377-528 (608)
154 2px0_A Flagellar biosynthesis 97.5 0.00043 1.5E-08 66.5 11.0 127 19-168 104-232 (296)
155 1fnn_A CDC6P, cell division co 97.5 0.00042 1.4E-08 69.3 11.2 115 22-160 46-169 (389)
156 2ehv_A Hypothetical protein PH 97.5 7.8E-05 2.7E-09 69.8 5.3 27 16-42 26-52 (251)
157 3bk7_A ABC transporter ATP-bin 97.5 0.00027 9.1E-09 74.9 9.9 63 97-160 226-288 (607)
158 3bk7_A ABC transporter ATP-bin 97.5 0.00016 5.5E-09 76.5 8.1 143 17-168 379-538 (607)
159 3dm5_A SRP54, signal recogniti 97.5 0.00061 2.1E-08 68.7 11.8 124 20-160 100-224 (443)
160 3te6_A Regulatory protein SIR3 97.5 0.0016 5.3E-08 63.0 14.0 123 19-161 44-174 (318)
161 2w58_A DNAI, primosome compone 97.5 0.00034 1.2E-08 63.1 9.0 26 21-46 55-80 (202)
162 1ye8_A Protein THEP1, hypothet 97.5 0.00064 2.2E-08 60.0 10.4 70 97-169 74-150 (178)
163 4f4c_A Multidrug resistance pr 97.5 3.4E-05 1.2E-09 89.3 2.6 60 100-161 1218-1277(1321)
164 1vma_A Cell division protein F 97.4 0.00062 2.1E-08 65.6 10.8 125 19-160 103-234 (306)
165 3ozx_A RNAse L inhibitor; ATP 97.4 0.00027 9.4E-09 73.7 8.8 63 96-160 135-197 (538)
166 4aby_A DNA repair protein RECN 97.4 0.00053 1.8E-08 69.4 10.7 59 100-160 296-356 (415)
167 4f4c_A Multidrug resistance pr 97.4 6.2E-05 2.1E-09 87.1 4.0 60 100-161 555-614 (1321)
168 1nlf_A Regulatory protein REPA 97.4 0.00032 1.1E-08 66.9 8.4 29 16-44 26-54 (279)
169 3n70_A Transport activator; si 97.4 0.00082 2.8E-08 57.1 10.0 37 8-44 12-48 (145)
170 2cvh_A DNA repair and recombin 97.4 0.00038 1.3E-08 63.5 8.3 31 12-42 11-42 (220)
171 4a74_A DNA repair and recombin 97.4 0.00019 6.5E-09 66.1 6.2 30 16-45 21-50 (231)
172 3jvv_A Twitching mobility prot 97.4 0.00058 2E-08 67.3 9.8 37 17-53 120-156 (356)
173 2orw_A Thymidine kinase; TMTK, 97.4 0.0003 1E-08 62.6 6.9 39 19-58 2-40 (184)
174 3e70_C DPA, signal recognition 97.3 0.00054 1.9E-08 66.7 8.9 126 18-161 127-254 (328)
175 1xx6_A Thymidine kinase; NESG, 97.3 0.0007 2.4E-08 60.4 8.6 40 18-58 6-45 (191)
176 3co5_A Putative two-component 97.3 0.0011 3.9E-08 56.0 9.4 33 9-41 16-48 (143)
177 1njg_A DNA polymerase III subu 97.2 0.0016 5.6E-08 59.9 10.9 34 11-44 33-69 (250)
178 2o0j_A Terminase, DNA packagin 97.2 0.0071 2.4E-07 60.0 15.3 69 4-72 162-231 (385)
179 2chg_A Replication factor C sm 97.2 0.0044 1.5E-07 56.0 13.1 34 10-43 26-61 (226)
180 2v1u_A Cell division control p 97.2 0.00093 3.2E-08 66.6 9.0 26 19-44 43-68 (387)
181 3bos_A Putative DNA replicatio 97.2 0.0012 4.2E-08 60.9 9.2 26 19-44 51-76 (242)
182 2iw3_A Elongation factor 3A; a 97.2 0.0016 5.3E-08 72.0 11.2 133 17-168 458-611 (986)
183 1sxj_E Activator 1 40 kDa subu 97.2 0.0019 6.5E-08 63.6 11.0 43 115-160 132-174 (354)
184 1ls1_A Signal recognition part 97.2 0.0017 5.9E-08 62.3 10.3 125 19-160 97-222 (295)
185 1l8q_A Chromosomal replication 97.2 0.002 7E-08 62.7 10.9 25 20-44 37-61 (324)
186 3g5u_A MCG1178, multidrug resi 97.1 0.00026 8.8E-09 81.8 5.0 60 99-160 526-585 (1284)
187 2yhs_A FTSY, cell division pro 97.1 0.0055 1.9E-07 62.4 14.0 44 19-62 292-336 (503)
188 4b3f_X DNA-binding protein smu 97.1 0.00054 1.9E-08 73.6 7.0 65 6-71 190-255 (646)
189 3ux8_A Excinuclease ABC, A sub 97.1 0.00069 2.4E-08 73.1 7.8 64 97-161 200-265 (670)
190 3cpe_A Terminase, DNA packagin 97.1 0.0067 2.3E-07 64.3 15.2 71 4-74 162-233 (592)
191 1n0w_A DNA repair protein RAD5 97.1 0.0011 3.7E-08 61.5 8.2 29 16-44 20-48 (243)
192 3g5u_A MCG1178, multidrug resi 97.1 0.00038 1.3E-08 80.4 6.0 61 99-161 1171-1231(1284)
193 2r6a_A DNAB helicase, replicat 97.1 0.00081 2.8E-08 68.9 7.5 44 11-54 194-237 (454)
194 1a5t_A Delta prime, HOLB; zinc 97.0 0.0023 7.8E-08 62.7 10.1 32 13-44 14-48 (334)
195 2qgz_A Helicase loader, putati 97.0 0.00051 1.7E-08 66.5 5.1 26 20-45 152-177 (308)
196 2gk6_A Regulator of nonsense t 97.0 0.00091 3.1E-08 71.4 7.2 66 6-71 181-246 (624)
197 1pzn_A RAD51, DNA repair and r 97.0 0.00056 1.9E-08 67.4 4.8 29 16-44 127-155 (349)
198 2qby_A CDC6 homolog 1, cell di 97.0 0.00075 2.6E-08 67.2 5.9 25 20-44 45-69 (386)
199 2bjv_A PSP operon transcriptio 96.9 0.0063 2.1E-07 57.2 11.4 33 13-45 22-54 (265)
200 3b85_A Phosphate starvation-in 96.9 0.00048 1.6E-08 62.5 3.2 44 5-49 7-50 (208)
201 2qby_B CDC6 homolog 3, cell di 96.9 0.0012 4E-08 65.9 6.3 45 390-434 316-362 (384)
202 2zpa_A Uncharacterized protein 96.9 0.0025 8.5E-08 67.4 8.8 111 8-162 178-290 (671)
203 1ojl_A Transcriptional regulat 96.8 0.0061 2.1E-07 58.7 11.0 35 11-45 16-50 (304)
204 1jr3_A DNA polymerase III subu 96.8 0.0061 2.1E-07 60.4 11.1 35 11-45 26-63 (373)
205 2j9r_A Thymidine kinase; TK1, 96.8 0.0015 5.1E-08 58.9 5.8 41 18-59 26-66 (214)
206 2wjy_A Regulator of nonsense t 96.8 0.0019 6.5E-08 70.6 7.6 66 6-71 357-422 (800)
207 2orv_A Thymidine kinase; TP4A 96.7 0.0026 8.9E-08 57.9 6.9 40 19-59 18-57 (234)
208 3syl_A Protein CBBX; photosynt 96.7 0.0074 2.5E-07 58.1 10.8 25 19-43 66-90 (309)
209 2eyu_A Twitching motility prot 96.7 0.00065 2.2E-08 64.0 3.0 41 17-57 22-63 (261)
210 2xzl_A ATP-dependent helicase 96.7 0.0014 4.7E-08 71.8 5.9 66 6-71 361-426 (802)
211 3u61_B DNA polymerase accessor 96.7 0.011 3.8E-07 57.4 11.8 34 11-44 36-72 (324)
212 2z4s_A Chromosomal replication 96.7 0.0093 3.2E-07 60.7 11.4 25 20-44 130-154 (440)
213 1tf7_A KAIC; homohexamer, hexa 96.6 0.0026 8.7E-08 66.5 7.1 132 16-160 277-417 (525)
214 1p9r_A General secretion pathw 96.6 0.0021 7.2E-08 64.7 6.1 40 18-57 165-204 (418)
215 1w4r_A Thymidine kinase; type 96.6 0.0021 7E-08 57.1 5.2 39 19-58 19-57 (195)
216 3k1j_A LON protease, ATP-depen 96.6 0.027 9.2E-07 59.8 14.9 39 10-48 50-88 (604)
217 2q6t_A DNAB replication FORK h 96.6 0.0039 1.3E-07 63.6 8.1 65 11-76 191-256 (444)
218 2qen_A Walker-type ATPase; unk 96.6 0.0086 2.9E-07 58.5 10.3 35 10-44 21-55 (350)
219 3vkw_A Replicase large subunit 96.6 0.0041 1.4E-07 62.5 7.9 107 19-158 160-268 (446)
220 1sxj_A Activator 1 95 kDa subu 96.6 0.0071 2.4E-07 62.9 10.1 25 20-44 77-101 (516)
221 1sxj_C Activator 1 40 kDa subu 96.6 0.0052 1.8E-07 60.2 8.6 33 12-44 36-70 (340)
222 3eie_A Vacuolar protein sortin 96.6 0.0063 2.2E-07 59.1 9.1 25 20-44 51-75 (322)
223 1iqp_A RFCS; clamp loader, ext 96.6 0.0075 2.6E-07 58.4 9.6 33 11-43 35-69 (327)
224 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0074 2.5E-07 58.6 9.4 25 20-44 45-69 (322)
225 1sxj_D Activator 1 41 kDa subu 96.6 0.0024 8.3E-08 62.8 6.0 34 10-43 46-81 (353)
226 2iw3_A Elongation factor 3A; a 96.5 0.0021 7.3E-08 71.0 6.0 66 97-168 899-964 (986)
227 3h4m_A Proteasome-activating n 96.5 0.0037 1.3E-07 59.5 6.8 27 18-44 49-75 (285)
228 3b9p_A CG5977-PA, isoform A; A 96.5 0.011 3.6E-07 56.7 10.0 26 19-44 53-78 (297)
229 2gza_A Type IV secretion syste 96.5 0.0024 8.2E-08 63.2 5.5 44 11-55 166-209 (361)
230 1hqc_A RUVB; extended AAA-ATPa 96.5 0.017 5.8E-07 55.9 11.6 25 20-44 38-62 (324)
231 3thx_A DNA mismatch repair pro 96.5 0.0088 3E-07 66.2 10.4 24 18-41 660-683 (934)
232 1j8m_F SRP54, signal recogniti 96.5 0.013 4.4E-07 56.1 10.2 124 20-160 98-224 (297)
233 2qp9_X Vacuolar protein sortin 96.5 0.0091 3.1E-07 58.9 9.4 25 20-44 84-108 (355)
234 3lda_A DNA repair protein RAD5 96.5 0.0036 1.2E-07 62.6 6.5 28 17-44 175-202 (400)
235 4fcw_A Chaperone protein CLPB; 96.5 0.008 2.7E-07 57.9 8.9 26 21-46 48-73 (311)
236 3b9q_A Chloroplast SRP recepto 96.4 0.0037 1.3E-07 60.1 6.3 54 18-71 98-152 (302)
237 2oap_1 GSPE-2, type II secreti 96.4 0.0032 1.1E-07 65.1 5.9 36 12-47 252-287 (511)
238 1e69_A Chromosome segregation 96.4 0.014 4.7E-07 56.8 10.1 62 97-160 217-282 (322)
239 3pfi_A Holliday junction ATP-d 96.4 0.02 6.9E-07 55.8 11.4 24 21-44 56-79 (338)
240 3thx_B DNA mismatch repair pro 96.3 0.031 1.1E-06 61.7 13.4 46 115-161 750-797 (918)
241 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0032 1.1E-07 56.7 4.5 41 18-59 26-66 (219)
242 1htw_A HI0065; nucleotide-bind 96.3 0.0027 9.3E-08 54.7 4.0 31 18-49 31-61 (158)
243 3hr8_A Protein RECA; alpha and 96.3 0.023 7.8E-07 55.7 10.9 39 16-55 57-95 (356)
244 1znw_A Guanylate kinase, GMP k 96.3 0.0028 9.4E-08 57.4 4.0 29 16-44 16-44 (207)
245 2og2_A Putative signal recogni 96.3 0.0052 1.8E-07 60.4 6.2 53 19-71 156-209 (359)
246 2gno_A DNA polymerase III, gam 96.2 0.01 3.6E-07 57.0 8.1 50 105-157 70-119 (305)
247 1zu4_A FTSY; GTPase, signal re 96.2 0.036 1.2E-06 53.6 11.7 44 19-62 104-148 (320)
248 3tr0_A Guanylate kinase, GMP k 96.2 0.0032 1.1E-07 56.6 4.0 28 17-44 4-31 (205)
249 2v9p_A Replication protein E1; 96.2 0.0048 1.6E-07 59.2 5.3 32 13-44 119-150 (305)
250 3vfd_A Spastin; ATPase, microt 96.1 0.022 7.4E-07 56.9 10.3 25 20-44 148-172 (389)
251 2zr9_A Protein RECA, recombina 96.1 0.01 3.4E-07 58.3 7.6 40 16-55 57-96 (349)
252 1w5s_A Origin recognition comp 96.1 0.0063 2.2E-07 61.1 6.3 43 392-434 350-396 (412)
253 1tf7_A KAIC; homohexamer, hexa 96.1 0.0043 1.5E-07 64.7 5.2 30 12-41 30-60 (525)
254 2ffh_A Protein (FFH); SRP54, s 96.1 0.034 1.2E-06 55.9 11.4 123 20-159 98-221 (425)
255 3ux8_A Excinuclease ABC, A sub 96.1 0.014 4.6E-07 62.9 9.1 63 97-160 541-606 (670)
256 1d2n_A N-ethylmaleimide-sensit 96.1 0.0068 2.3E-07 57.3 5.9 25 20-44 64-88 (272)
257 1kgd_A CASK, peripheral plasma 96.1 0.0044 1.5E-07 54.7 4.2 26 19-44 4-29 (180)
258 1z6g_A Guanylate kinase; struc 96.0 0.0036 1.2E-07 57.1 3.7 30 15-44 18-47 (218)
259 1rj9_A FTSY, signal recognitio 96.0 0.0076 2.6E-07 57.9 6.1 39 19-57 101-139 (304)
260 3qkt_A DNA double-strand break 96.0 0.13 4.4E-06 50.2 15.0 62 97-159 246-313 (339)
261 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.016 5.6E-07 54.0 8.3 26 19-44 38-63 (262)
262 1lvg_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 56.2 3.4 27 18-44 2-28 (198)
263 2fna_A Conserved hypothetical 96.0 0.038 1.3E-06 53.9 11.1 32 11-44 23-54 (357)
264 1sxj_B Activator 1 37 kDa subu 96.0 0.02 6.8E-07 55.2 8.8 33 11-43 31-65 (323)
265 2chq_A Replication factor C sm 95.9 0.0074 2.5E-07 58.2 5.6 33 12-44 28-62 (319)
266 2ewv_A Twitching motility prot 95.9 0.0033 1.1E-07 62.4 3.1 41 17-57 133-174 (372)
267 1ewq_A DNA mismatch repair pro 95.9 0.0071 2.4E-07 65.5 5.9 25 20-44 576-600 (765)
268 1s96_A Guanylate kinase, GMP k 95.9 0.0054 1.9E-07 56.0 4.2 30 16-45 12-41 (219)
269 3d8b_A Fidgetin-like protein 1 95.9 0.014 4.9E-07 57.5 7.6 26 19-44 116-141 (357)
270 1zp6_A Hypothetical protein AT 95.9 0.0039 1.3E-07 55.4 3.1 28 16-43 5-32 (191)
271 2ce7_A Cell division protein F 95.8 0.015 5.3E-07 59.3 7.5 24 21-44 50-73 (476)
272 4a1f_A DNAB helicase, replicat 95.8 0.015 5.1E-07 56.6 7.0 58 10-69 36-93 (338)
273 3pvs_A Replication-associated 95.8 0.027 9.1E-07 57.3 9.2 32 13-44 41-74 (447)
274 2o8b_B DNA mismatch repair pro 95.8 0.022 7.7E-07 63.8 9.1 21 20-40 789-809 (1022)
275 2v3c_C SRP54, signal recogniti 95.7 0.011 3.7E-07 59.8 5.8 25 21-45 100-124 (432)
276 3lfu_A DNA helicase II; SF1 he 95.7 0.011 3.8E-07 63.4 6.2 68 6-75 10-80 (647)
277 3tau_A Guanylate kinase, GMP k 95.6 0.008 2.7E-07 54.3 4.0 28 18-45 6-33 (208)
278 3a00_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 53.6 3.5 26 20-45 1-26 (186)
279 2j41_A Guanylate kinase; GMP, 95.6 0.0078 2.7E-07 54.0 3.9 28 17-44 3-30 (207)
280 1xp8_A RECA protein, recombina 95.6 0.1 3.4E-06 51.4 12.1 40 16-55 70-109 (366)
281 3uk6_A RUVB-like 2; hexameric 95.6 0.023 7.8E-07 56.1 7.6 26 20-45 70-95 (368)
282 2zan_A Vacuolar protein sortin 95.5 0.023 8E-07 57.8 7.7 26 19-44 166-191 (444)
283 3c8u_A Fructokinase; YP_612366 95.5 0.005 1.7E-07 55.6 2.3 28 18-45 20-47 (208)
284 3ney_A 55 kDa erythrocyte memb 95.5 0.011 3.6E-07 52.9 4.2 27 18-44 17-43 (197)
285 3t15_A Ribulose bisphosphate c 95.4 0.031 1.1E-06 53.4 7.7 24 21-44 37-60 (293)
286 1wb9_A DNA mismatch repair pro 95.4 0.027 9.1E-07 61.4 7.7 25 19-43 606-630 (800)
287 3lnc_A Guanylate kinase, GMP k 95.4 0.0061 2.1E-07 56.1 2.3 29 16-44 23-52 (231)
288 3aez_A Pantothenate kinase; tr 95.3 0.0095 3.2E-07 57.5 3.7 30 17-46 87-116 (312)
289 3bgw_A DNAB-like replicative h 95.3 0.033 1.1E-06 56.6 7.7 44 11-55 188-231 (444)
290 2dr3_A UPF0273 protein PH0284; 95.2 0.013 4.6E-07 54.0 4.1 39 16-54 19-57 (247)
291 2xxa_A Signal recognition part 95.1 0.095 3.3E-06 52.9 10.5 122 21-159 101-224 (433)
292 2j37_W Signal recognition part 95.1 0.095 3.2E-06 53.8 10.5 123 22-161 103-226 (504)
293 3hu3_A Transitional endoplasmi 95.1 0.029 9.8E-07 57.7 6.6 27 18-44 236-262 (489)
294 3pxi_A Negative regulator of g 95.0 0.037 1.3E-06 60.5 7.7 23 22-44 523-545 (758)
295 4eun_A Thermoresistant glucoki 95.0 0.016 5.5E-07 51.9 4.0 27 18-44 27-53 (200)
296 3cmu_A Protein RECA, recombina 95.0 0.061 2.1E-06 63.7 9.7 40 17-57 1424-1463(2050)
297 3vaa_A Shikimate kinase, SK; s 95.0 0.018 6E-07 51.6 4.2 29 16-44 21-49 (199)
298 1q57_A DNA primase/helicase; d 95.0 0.1 3.5E-06 53.9 10.5 59 10-69 232-290 (503)
299 3asz_A Uridine kinase; cytidin 94.9 0.013 4.5E-07 52.8 3.3 27 18-44 4-30 (211)
300 1sq5_A Pantothenate kinase; P- 94.9 0.036 1.2E-06 53.3 6.5 28 18-45 78-105 (308)
301 3pih_A Uvrabc system protein A 94.9 0.21 7.1E-06 55.1 13.0 62 99-161 805-869 (916)
302 4b4t_J 26S protease regulatory 94.8 0.067 2.3E-06 53.0 8.1 26 19-44 181-206 (405)
303 2qor_A Guanylate kinase; phosp 94.8 0.018 6.2E-07 51.7 3.7 29 16-44 8-36 (204)
304 1kag_A SKI, shikimate kinase I 94.8 0.021 7.1E-07 49.6 4.0 26 19-44 3-28 (173)
305 2i3b_A HCR-ntpase, human cance 94.7 0.018 6.3E-07 51.1 3.6 26 20-45 1-26 (189)
306 1tq4_A IIGP1, interferon-induc 94.7 0.028 9.6E-07 56.3 5.1 29 21-49 70-98 (413)
307 2obl_A ESCN; ATPase, hydrolase 94.6 0.035 1.2E-06 54.4 5.5 33 15-47 66-98 (347)
308 1g5t_A COB(I)alamin adenosyltr 94.6 0.065 2.2E-06 47.4 6.7 40 19-59 27-66 (196)
309 2jeo_A Uridine-cytidine kinase 94.6 0.019 6.4E-07 53.3 3.3 29 16-44 21-49 (245)
310 3kta_A Chromosome segregation 94.6 0.029 1E-06 49.1 4.5 25 21-45 27-51 (182)
311 3uie_A Adenylyl-sulfate kinase 94.5 0.031 1.1E-06 49.9 4.5 29 17-45 22-50 (200)
312 2bdt_A BH3686; alpha-beta prot 94.5 0.016 5.6E-07 51.2 2.6 23 20-42 2-24 (189)
313 3u4q_A ATP-dependent helicase/ 94.5 0.036 1.2E-06 63.9 6.0 69 4-74 9-82 (1232)
314 3tqc_A Pantothenate kinase; bi 94.4 0.07 2.4E-06 51.5 7.1 24 22-45 94-117 (321)
315 1jbk_A CLPB protein; beta barr 94.4 0.047 1.6E-06 47.7 5.5 35 10-44 31-67 (195)
316 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.018 6E-07 58.8 2.9 37 13-49 131-167 (460)
317 1ypw_A Transitional endoplasmi 94.4 0.033 1.1E-06 61.1 5.2 28 17-44 235-262 (806)
318 3sop_A Neuronal-specific septi 94.4 0.023 7.7E-07 53.6 3.4 28 22-49 4-31 (270)
319 1knq_A Gluconate kinase; ALFA/ 94.3 0.025 8.5E-07 49.3 3.4 26 19-44 7-32 (175)
320 1uaa_A REP helicase, protein ( 94.3 0.045 1.5E-06 58.9 6.1 68 6-75 3-73 (673)
321 2vf7_A UVRA2, excinuclease ABC 94.3 0.13 4.3E-06 56.3 9.5 65 96-161 727-794 (842)
322 4b4t_H 26S protease regulatory 94.3 0.11 3.8E-06 52.3 8.4 27 18-44 241-267 (467)
323 2ygr_A Uvrabc system protein A 94.3 0.17 5.9E-06 55.8 10.6 64 97-161 861-927 (993)
324 4eaq_A DTMP kinase, thymidylat 94.3 0.067 2.3E-06 49.0 6.3 41 17-58 23-63 (229)
325 2qm8_A GTPase/ATPase; G protei 94.2 0.028 9.6E-07 54.9 3.7 37 17-53 52-88 (337)
326 2vp4_A Deoxynucleoside kinase; 94.1 0.028 9.7E-07 51.5 3.5 36 18-57 18-53 (230)
327 2zts_A Putative uncharacterize 94.1 0.019 6.4E-07 53.1 2.2 29 16-44 26-54 (251)
328 1rz3_A Hypothetical protein rb 94.0 0.033 1.1E-06 49.9 3.6 26 19-44 21-46 (201)
329 2bbw_A Adenylate kinase 4, AK4 94.0 0.034 1.2E-06 51.5 3.8 26 19-44 26-51 (246)
330 1nij_A Hypothetical protein YJ 94.0 0.029 9.8E-07 54.3 3.4 24 21-44 5-28 (318)
331 1qvr_A CLPB protein; coiled co 93.9 0.1 3.6E-06 57.7 8.2 25 20-44 191-215 (854)
332 3a8t_A Adenylate isopentenyltr 93.9 0.031 1.1E-06 54.1 3.4 25 19-43 39-63 (339)
333 3bh0_A DNAB-like replicative h 93.9 0.083 2.8E-06 50.9 6.5 58 11-70 59-116 (315)
334 2p65_A Hypothetical protein PF 93.8 0.053 1.8E-06 47.2 4.6 34 11-44 32-67 (187)
335 2dpy_A FLII, flagellum-specifi 93.8 0.059 2E-06 54.5 5.3 42 15-56 152-193 (438)
336 1f2t_A RAD50 ABC-ATPase; DNA d 93.8 0.038 1.3E-06 46.8 3.4 23 20-42 23-45 (149)
337 1qhx_A CPT, protein (chloramph 93.7 0.05 1.7E-06 47.3 4.1 26 20-45 3-28 (178)
338 3umf_A Adenylate kinase; rossm 93.7 0.043 1.5E-06 49.8 3.7 29 16-44 25-53 (217)
339 3trf_A Shikimate kinase, SK; a 93.7 0.05 1.7E-06 47.7 4.1 25 20-44 5-29 (185)
340 2qt1_A Nicotinamide riboside k 93.7 0.035 1.2E-06 49.8 3.1 30 14-43 15-44 (207)
341 2ze6_A Isopentenyl transferase 93.6 0.04 1.4E-06 51.3 3.6 23 22-44 3-25 (253)
342 3cm0_A Adenylate kinase; ATP-b 93.6 0.033 1.1E-06 48.9 2.8 26 19-44 3-28 (186)
343 3euj_A Chromosome partition pr 93.6 0.049 1.7E-06 55.5 4.3 33 17-50 27-59 (483)
344 3exa_A TRNA delta(2)-isopenten 93.5 0.043 1.5E-06 52.4 3.6 24 20-43 3-26 (322)
345 1in4_A RUVB, holliday junction 93.5 0.047 1.6E-06 53.2 4.0 24 21-44 52-75 (334)
346 3lw7_A Adenylate kinase relate 93.5 0.04 1.4E-06 47.6 3.2 20 21-40 2-21 (179)
347 1ex7_A Guanylate kinase; subst 93.5 0.05 1.7E-06 48.0 3.8 24 21-44 2-25 (186)
348 2yv5_A YJEQ protein; hydrolase 93.5 0.074 2.5E-06 51.0 5.3 30 17-47 162-191 (302)
349 2yvu_A Probable adenylyl-sulfa 93.5 0.052 1.8E-06 47.7 3.8 28 18-45 11-38 (186)
350 4b4t_I 26S protease regulatory 93.4 0.14 4.9E-06 51.0 7.3 25 20-44 216-240 (437)
351 4e22_A Cytidylate kinase; P-lo 93.4 0.057 2E-06 50.2 4.3 27 18-44 25-51 (252)
352 1kht_A Adenylate kinase; phosp 93.4 0.051 1.7E-06 47.8 3.7 25 20-44 3-27 (192)
353 3kb2_A SPBC2 prophage-derived 93.3 0.052 1.8E-06 46.8 3.6 23 22-44 3-25 (173)
354 1cke_A CK, MSSA, protein (cyti 93.3 0.056 1.9E-06 49.2 4.0 25 20-44 5-29 (227)
355 1zd8_A GTP:AMP phosphotransfer 93.3 0.06 2.1E-06 49.1 4.2 28 17-44 4-31 (227)
356 3cmu_A Protein RECA, recombina 93.3 0.24 8.2E-06 58.8 10.0 40 16-55 1077-1116(2050)
357 2f1r_A Molybdopterin-guanine d 93.3 0.03 1E-06 48.7 1.9 26 21-46 3-28 (171)
358 4ag6_A VIRB4 ATPase, type IV s 93.3 0.066 2.3E-06 53.4 4.7 41 19-60 34-74 (392)
359 2z43_A DNA repair and recombin 93.2 0.08 2.7E-06 51.3 5.1 30 16-45 103-132 (324)
360 3tlx_A Adenylate kinase 2; str 93.2 0.076 2.6E-06 49.1 4.6 27 18-44 27-53 (243)
361 2r6f_A Excinuclease ABC subuni 93.2 0.25 8.6E-06 54.3 9.3 63 98-161 844-909 (972)
362 2plr_A DTMP kinase, probable t 93.1 0.13 4.3E-06 46.0 6.0 28 19-46 3-30 (213)
363 2c95_A Adenylate kinase 1; tra 93.1 0.074 2.5E-06 47.0 4.3 28 17-44 6-33 (196)
364 3iij_A Coilin-interacting nucl 93.1 0.062 2.1E-06 46.9 3.7 27 18-44 9-35 (180)
365 1pjr_A PCRA; DNA repair, DNA r 93.1 0.13 4.4E-06 55.8 7.0 67 6-74 12-81 (724)
366 2v54_A DTMP kinase, thymidylat 93.0 0.062 2.1E-06 47.9 3.7 27 18-44 2-28 (204)
367 2qag_B Septin-6, protein NEDD5 93.0 0.054 1.9E-06 54.2 3.6 32 12-43 32-65 (427)
368 2bwj_A Adenylate kinase 5; pho 93.0 0.073 2.5E-06 47.1 4.1 30 15-44 7-36 (199)
369 3nwj_A ATSK2; P loop, shikimat 93.0 0.068 2.3E-06 49.6 4.0 25 20-44 48-72 (250)
370 2rcn_A Probable GTPase ENGC; Y 93.0 0.078 2.7E-06 51.9 4.6 29 17-45 212-240 (358)
371 3foz_A TRNA delta(2)-isopenten 93.0 0.059 2E-06 51.4 3.6 24 20-43 10-33 (316)
372 2rhm_A Putative kinase; P-loop 93.0 0.052 1.8E-06 47.9 3.1 26 19-44 4-29 (193)
373 2qmh_A HPR kinase/phosphorylas 93.0 0.052 1.8E-06 48.1 2.9 24 19-42 33-56 (205)
374 2pez_A Bifunctional 3'-phospho 92.9 0.06 2.1E-06 47.0 3.4 26 19-44 4-29 (179)
375 1lw7_A Transcriptional regulat 92.9 0.055 1.9E-06 53.4 3.4 30 17-46 165-196 (365)
376 1y63_A LMAJ004144AAA protein; 92.9 0.074 2.5E-06 46.7 3.9 26 18-43 8-33 (184)
377 3cf2_A TER ATPase, transitiona 92.8 0.38 1.3E-05 52.3 10.0 25 20-44 238-262 (806)
378 1ly1_A Polynucleotide kinase; 92.8 0.064 2.2E-06 46.6 3.4 22 21-42 3-24 (181)
379 1v5w_A DMC1, meiotic recombina 92.8 0.11 3.6E-06 50.9 5.3 29 16-44 118-146 (343)
380 1u0l_A Probable GTPase ENGC; p 92.8 0.069 2.4E-06 51.2 3.8 30 17-46 166-195 (301)
381 1r6b_X CLPA protein; AAA+, N-t 92.7 0.22 7.7E-06 54.2 8.3 119 8-157 465-605 (758)
382 3qf7_A RAD50; ABC-ATPase, ATPa 92.6 0.059 2E-06 53.2 3.2 22 22-43 25-46 (365)
383 3t61_A Gluconokinase; PSI-biol 92.6 0.068 2.3E-06 47.7 3.3 25 20-44 18-42 (202)
384 1svm_A Large T antigen; AAA+ f 92.6 0.088 3E-06 52.0 4.3 29 16-44 165-193 (377)
385 1qvr_A CLPB protein; coiled co 92.5 0.16 5.4E-06 56.2 6.8 25 21-45 589-613 (854)
386 1nn5_A Similar to deoxythymidy 92.4 0.11 3.6E-06 46.7 4.4 27 18-44 7-33 (215)
387 3sr0_A Adenylate kinase; phosp 92.4 0.085 2.9E-06 47.4 3.6 24 22-45 2-25 (206)
388 3cr8_A Sulfate adenylyltranfer 92.4 0.068 2.3E-06 55.6 3.4 37 16-52 365-401 (552)
389 1m7g_A Adenylylsulfate kinase; 92.3 0.085 2.9E-06 47.5 3.7 29 16-44 21-49 (211)
390 1xjc_A MOBB protein homolog; s 92.3 0.11 3.8E-06 44.9 4.1 25 21-45 5-29 (169)
391 3crm_A TRNA delta(2)-isopenten 92.3 0.088 3E-06 50.7 3.8 23 21-43 6-28 (323)
392 3d3q_A TRNA delta(2)-isopenten 92.3 0.086 2.9E-06 51.1 3.7 24 21-44 8-31 (340)
393 1odf_A YGR205W, hypothetical 3 92.2 0.12 4E-06 49.2 4.6 26 19-44 30-55 (290)
394 1zuh_A Shikimate kinase; alpha 92.2 0.11 3.7E-06 44.7 4.0 26 20-45 7-32 (168)
395 1aky_A Adenylate kinase; ATP:A 92.2 0.11 3.6E-06 47.2 4.1 26 19-44 3-28 (220)
396 1np6_A Molybdopterin-guanine d 92.1 0.11 3.6E-06 45.4 3.8 25 20-44 6-30 (174)
397 1tev_A UMP-CMP kinase; ploop, 92.0 0.089 3E-06 46.3 3.4 25 20-44 3-27 (196)
398 1lv7_A FTSH; alpha/beta domain 92.0 0.13 4.5E-06 47.7 4.6 25 20-44 45-69 (257)
399 2jaq_A Deoxyguanosine kinase; 92.0 0.1 3.5E-06 46.3 3.7 24 22-45 2-25 (205)
400 1gvn_B Zeta; postsegregational 92.0 0.083 2.9E-06 50.2 3.2 25 20-44 33-57 (287)
401 4edh_A DTMP kinase, thymidylat 92.0 0.21 7.3E-06 45.0 5.8 40 19-58 5-44 (213)
402 1zak_A Adenylate kinase; ATP:A 91.8 0.097 3.3E-06 47.5 3.4 26 19-44 4-29 (222)
403 3cf0_A Transitional endoplasmi 91.8 0.11 3.8E-06 49.7 4.0 27 18-44 47-73 (301)
404 2if2_A Dephospho-COA kinase; a 91.8 0.11 3.6E-06 46.4 3.6 21 22-42 3-23 (204)
405 2wwf_A Thymidilate kinase, put 91.8 0.11 3.7E-06 46.6 3.6 27 18-44 8-34 (212)
406 1ixz_A ATP-dependent metallopr 91.8 0.099 3.4E-06 48.5 3.5 24 21-44 50-73 (254)
407 3fb4_A Adenylate kinase; psych 91.7 0.11 3.8E-06 46.8 3.6 23 22-44 2-24 (216)
408 1jjv_A Dephospho-COA kinase; P 91.7 0.1 3.4E-06 46.7 3.3 21 22-42 4-24 (206)
409 3qks_A DNA double-strand break 91.7 0.1 3.5E-06 46.7 3.4 25 20-44 23-47 (203)
410 1ofh_A ATP-dependent HSL prote 91.7 0.15 5.1E-06 48.6 4.8 25 20-44 50-74 (310)
411 2r44_A Uncharacterized protein 91.7 0.11 3.9E-06 50.2 3.9 35 10-44 36-70 (331)
412 2x8a_A Nuclear valosin-contain 91.7 0.11 3.7E-06 49.0 3.6 25 21-45 45-69 (274)
413 3dl0_A Adenylate kinase; phosp 91.7 0.12 4.2E-06 46.5 3.9 23 22-44 2-24 (216)
414 3cmw_A Protein RECA, recombina 91.6 0.61 2.1E-05 54.7 10.4 39 17-55 729-767 (1706)
415 4tmk_A Protein (thymidylate ki 91.6 0.24 8.1E-06 44.7 5.7 41 19-59 2-43 (213)
416 2z0h_A DTMP kinase, thymidylat 91.6 0.21 7.1E-06 44.0 5.3 23 22-44 2-24 (197)
417 3im1_A Protein SNU246, PRE-mRN 91.6 0.34 1.1E-05 46.9 7.2 95 408-502 1-101 (328)
418 1nks_A Adenylate kinase; therm 91.6 0.11 3.6E-06 45.7 3.3 24 22-45 3-26 (194)
419 2cdn_A Adenylate kinase; phosp 91.5 0.14 4.8E-06 45.5 4.1 26 19-44 19-44 (201)
420 1gm5_A RECG; helicase, replica 91.5 0.16 5.6E-06 55.1 5.3 78 213-296 417-495 (780)
421 1via_A Shikimate kinase; struc 91.4 0.12 4.2E-06 44.8 3.5 23 22-44 6-28 (175)
422 1t9h_A YLOQ, probable GTPase E 91.3 0.034 1.2E-06 53.3 -0.3 29 16-44 169-197 (307)
423 3hws_A ATP-dependent CLP prote 91.3 0.19 6.5E-06 49.4 5.2 26 19-44 50-75 (363)
424 1e9r_A Conjugal transfer prote 91.2 0.1 3.5E-06 52.8 3.2 43 19-62 52-94 (437)
425 1gtv_A TMK, thymidylate kinase 91.2 0.048 1.6E-06 49.1 0.6 23 22-44 2-24 (214)
426 2vli_A Antibiotic resistance p 91.2 0.11 3.8E-06 45.2 3.0 26 19-44 4-29 (183)
427 3eph_A TRNA isopentenyltransfe 91.1 0.12 3.9E-06 51.3 3.3 23 21-43 3-25 (409)
428 1qhl_A Protein (cell division 91.1 0.042 1.4E-06 50.2 0.1 29 22-50 29-57 (227)
429 2ius_A DNA translocase FTSK; n 91.1 0.22 7.4E-06 51.2 5.4 25 18-42 165-189 (512)
430 1c9k_A COBU, adenosylcobinamid 91.1 0.12 4.2E-06 45.1 3.1 21 23-43 2-22 (180)
431 1tue_A Replication protein E1; 91.1 0.15 5.2E-06 45.4 3.7 25 19-43 57-81 (212)
432 1ukz_A Uridylate kinase; trans 91.1 0.15 5.1E-06 45.4 3.8 25 20-44 15-39 (203)
433 1pui_A ENGB, probable GTP-bind 91.1 0.092 3.1E-06 46.9 2.4 25 17-41 23-47 (210)
434 1u94_A RECA protein, recombina 91.0 0.15 5.3E-06 49.9 4.1 38 17-54 60-97 (356)
435 1iy2_A ATP-dependent metallopr 90.9 0.14 4.6E-06 48.3 3.5 24 22-45 75-98 (278)
436 2iyv_A Shikimate kinase, SK; t 90.8 0.16 5.3E-06 44.4 3.6 24 21-44 3-26 (184)
437 1e6c_A Shikimate kinase; phosp 90.8 0.15 5.2E-06 43.9 3.5 24 21-44 3-26 (173)
438 1vht_A Dephospho-COA kinase; s 90.8 0.13 4.4E-06 46.4 3.1 23 20-42 4-26 (218)
439 1ny5_A Transcriptional regulat 90.8 1.3 4.4E-05 43.9 10.6 37 17-53 157-193 (387)
440 3cmw_A Protein RECA, recombina 90.8 0.65 2.2E-05 54.4 9.5 40 16-55 30-69 (1706)
441 3be4_A Adenylate kinase; malar 90.7 0.18 6.2E-06 45.5 4.1 26 19-44 4-29 (217)
442 2www_A Methylmalonic aciduria 90.7 0.16 5.4E-06 49.7 3.8 39 20-58 74-113 (349)
443 1qf9_A UMP/CMP kinase, protein 90.7 0.15 5.2E-06 44.7 3.4 24 21-44 7-30 (194)
444 1oix_A RAS-related protein RAB 90.7 0.15 5.2E-06 44.9 3.4 23 22-44 31-53 (191)
445 3auy_A DNA double-strand break 90.6 0.13 4.6E-06 50.8 3.3 23 20-42 25-47 (371)
446 1ak2_A Adenylate kinase isoenz 90.6 0.18 6.2E-06 46.1 4.0 26 19-44 15-40 (233)
447 3io5_A Recombination and repai 90.6 0.1 3.4E-06 49.9 2.2 40 17-57 26-66 (333)
448 1w1w_A Structural maintenance 90.6 0.17 5.9E-06 51.0 4.2 28 18-45 24-51 (430)
449 3a4m_A L-seryl-tRNA(SEC) kinas 90.6 0.14 4.9E-06 47.7 3.3 25 19-43 3-27 (260)
450 2f9l_A RAB11B, member RAS onco 90.5 0.16 5.5E-06 44.9 3.5 23 22-44 7-29 (199)
451 2p5t_B PEZT; postsegregational 90.5 0.11 3.8E-06 48.2 2.4 25 20-44 32-56 (253)
452 1e4v_A Adenylate kinase; trans 90.5 0.17 5.7E-06 45.6 3.5 23 22-44 2-24 (214)
453 3lv8_A DTMP kinase, thymidylat 90.4 0.35 1.2E-05 44.3 5.6 27 19-45 26-52 (236)
454 2i1q_A DNA repair and recombin 90.4 0.24 8.1E-06 47.8 4.8 27 17-43 95-121 (322)
455 2pt5_A Shikimate kinase, SK; a 90.4 0.16 5.5E-06 43.5 3.2 23 22-44 2-24 (168)
456 3v9p_A DTMP kinase, thymidylat 90.3 0.23 7.7E-06 45.3 4.3 29 16-44 21-49 (227)
457 1uf9_A TT1252 protein; P-loop, 90.3 0.16 5.3E-06 45.1 3.2 24 20-43 8-31 (203)
458 2pbr_A DTMP kinase, thymidylat 90.3 0.17 5.7E-06 44.5 3.3 23 22-44 2-24 (195)
459 2p67_A LAO/AO transport system 90.3 0.2 6.9E-06 48.8 4.2 29 17-45 53-81 (341)
460 3hgt_A HDA1 complex subunit 3; 90.2 1.4 4.9E-05 42.1 9.8 112 211-351 123-241 (328)
461 2o5v_A DNA replication and rep 90.2 0.15 5.3E-06 49.9 3.2 23 19-42 26-48 (359)
462 2xb4_A Adenylate kinase; ATP-b 90.1 0.17 6E-06 45.9 3.4 23 22-44 2-24 (223)
463 3nbx_X ATPase RAVA; AAA+ ATPas 90.0 0.22 7.4E-06 51.2 4.3 34 11-44 32-65 (500)
464 3r20_A Cytidylate kinase; stru 89.6 0.26 8.7E-06 45.1 4.0 26 19-44 8-33 (233)
465 3tmk_A Thymidylate kinase; pho 89.4 0.4 1.4E-05 43.3 5.1 37 18-57 3-39 (216)
466 3hjn_A DTMP kinase, thymidylat 89.3 0.42 1.4E-05 42.4 5.1 39 23-61 3-41 (197)
467 4hlc_A DTMP kinase, thymidylat 89.2 0.64 2.2E-05 41.5 6.3 39 20-59 2-40 (205)
468 2gj8_A MNME, tRNA modification 88.9 0.22 7.7E-06 42.9 3.0 25 19-43 3-27 (172)
469 2dyk_A GTP-binding protein; GT 88.8 0.28 9.6E-06 41.3 3.5 22 22-43 3-24 (161)
470 1q3t_A Cytidylate kinase; nucl 88.8 0.31 1.1E-05 44.5 4.0 27 18-44 14-40 (236)
471 3cf2_A TER ATPase, transitiona 88.7 0.95 3.3E-05 49.1 8.2 24 21-44 512-535 (806)
472 2wji_A Ferrous iron transport 88.6 0.28 9.5E-06 41.9 3.3 22 22-43 5-26 (165)
473 2grj_A Dephospho-COA kinase; T 88.5 0.3 1E-05 43.2 3.6 24 20-43 12-35 (192)
474 2ce2_X GTPase HRAS; signaling 88.5 0.29 9.8E-06 41.2 3.4 22 22-43 5-26 (166)
475 2vhj_A Ntpase P4, P4; non- hyd 88.5 0.24 8.3E-06 47.4 3.1 27 17-43 120-146 (331)
476 3m6a_A ATP-dependent protease 88.4 0.28 9.6E-06 51.1 3.9 26 19-44 107-132 (543)
477 1z2a_A RAS-related protein RAB 88.4 0.29 9.8E-06 41.5 3.3 22 22-43 7-28 (168)
478 2ged_A SR-beta, signal recogni 88.3 0.31 1E-05 42.6 3.5 24 21-44 49-72 (193)
479 1z0j_A RAB-22, RAS-related pro 88.1 0.33 1.1E-05 41.2 3.5 23 22-44 8-30 (170)
480 2ga8_A Hypothetical 39.9 kDa p 87.9 0.53 1.8E-05 45.7 5.2 35 8-42 6-46 (359)
481 3lxx_A GTPase IMAP family memb 87.8 0.36 1.2E-05 44.1 3.8 24 22-45 31-54 (239)
482 1ek0_A Protein (GTP-binding pr 87.8 0.34 1.2E-05 41.0 3.5 23 22-44 5-27 (170)
483 1ky3_A GTP-binding protein YPT 87.8 0.35 1.2E-05 41.6 3.5 22 22-43 10-31 (182)
484 1kao_A RAP2A; GTP-binding prot 87.7 0.36 1.2E-05 40.7 3.5 22 22-43 5-26 (167)
485 1g16_A RAS-related protein SEC 87.6 0.35 1.2E-05 41.0 3.4 22 22-43 5-26 (170)
486 2wjg_A FEOB, ferrous iron tran 87.6 0.34 1.2E-05 42.1 3.3 21 22-42 9-29 (188)
487 3pxg_A Negative regulator of g 87.6 0.53 1.8E-05 48.0 5.2 32 13-44 192-225 (468)
488 1u8z_A RAS-related protein RAL 87.5 0.37 1.3E-05 40.7 3.5 22 22-43 6-27 (168)
489 2c9o_A RUVB-like 1; hexameric 87.5 0.44 1.5E-05 48.4 4.6 25 20-44 63-87 (456)
490 3ake_A Cytidylate kinase; CMP 87.4 0.37 1.2E-05 42.8 3.5 23 22-44 4-26 (208)
491 1ltq_A Polynucleotide kinase; 87.4 0.33 1.1E-05 46.1 3.4 23 21-43 3-25 (301)
492 1um8_A ATP-dependent CLP prote 87.4 0.36 1.2E-05 47.6 3.7 25 20-44 72-96 (376)
493 1uj2_A Uridine-cytidine kinase 87.3 0.39 1.3E-05 44.4 3.7 24 21-44 23-46 (252)
494 1wms_A RAB-9, RAB9, RAS-relate 87.3 0.39 1.3E-05 41.1 3.5 22 22-43 9-30 (177)
495 2erx_A GTP-binding protein DI- 87.2 0.38 1.3E-05 40.8 3.4 21 22-42 5-25 (172)
496 1z08_A RAS-related protein RAB 87.2 0.4 1.4E-05 40.7 3.5 22 22-43 8-29 (170)
497 2r62_A Cell division protease 87.2 0.22 7.5E-06 46.5 1.9 25 20-44 44-68 (268)
498 2wsm_A Hydrogenase expression/ 87.1 0.65 2.2E-05 41.6 5.1 27 19-45 29-55 (221)
499 1svi_A GTP-binding protein YSX 87.0 0.34 1.2E-05 42.4 3.0 23 20-42 23-45 (195)
500 1c1y_A RAS-related protein RAP 87.0 0.39 1.3E-05 40.5 3.3 22 22-43 5-26 (167)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.2e-90 Score=751.87 Aligned_cols=509 Identities=46% Similarity=0.792 Sum_probs=472.7
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC--CcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK--SGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~--~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~ 80 (524)
.+|++.++++|...+..+++++++|||||||||++|+++....... +..+++++|+++++.|+++++++.++..++..
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~ 171 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE 171 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhe
Confidence 6899999999999999999999999999999999999987654433 56799999999999999999999999999999
Q ss_pred EeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+||.++++.....+++|+++|+|++++.+..++.+.++++||+||+|+|+++.+.+..+++.+...++ +.++|+||||+
T Consensus 172 vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~ 250 (773)
T 2xau_A 172 VGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATL 250 (773)
T ss_dssp EEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCS
T ss_pred ecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccc
Confidence 99998888877788999999999999999999999999999999999999999999999999988776 89999999999
Q ss_pred ChHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 009827 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~ 240 (524)
+.+.+++|+++.+++.++++.+|++.+|......++....+..+.+++...++|++||||+|+++++.+++.|.+....+
T Consensus 251 ~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l 330 (773)
T 2xau_A 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 (773)
T ss_dssp CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988889998888888888887788999999999999999999998743322
Q ss_pred C-CCCCCCeEEEEecCCCCHHHHhcccCCCC-----CCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccc
Q 009827 241 D-EGSCMDAVILPLHGSLPPEMQVRVFSPPP-----PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (524)
Q Consensus 241 ~-~~~~~~~~v~~lh~~l~~~~r~~v~~~f~-----~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~ 314 (524)
. .....++.+.++||+|++++|.++++.|+ +|.++||||||++|+|||||+|++|||+|++|.+.||+..|++.
T Consensus 331 ~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~ 410 (773)
T 2xau_A 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVES 410 (773)
T ss_dssp HHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEE
T ss_pred cccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccc
Confidence 0 00114788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCH
Q 009827 315 LDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSS 394 (524)
Q Consensus 315 l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 394 (524)
+...|+|+++|.||+|||||.++|.||+||+++++...+.++..|||++.+|.+++|+++.+|+.+ +..|+|++||+.
T Consensus 411 L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~--~~~f~~~~~p~~ 488 (773)
T 2xau_A 411 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDD--LVHFDFMDPPAP 488 (773)
T ss_dssp EEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCC--GGGCCCSSCCCH
T ss_pred cccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCC--hhhccccCCCcH
Confidence 999999999999999999999999999999999995559999999999999999999999999988 889999999999
Q ss_pred HHHHHHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhHHHhh
Q 009827 395 ESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKRK 474 (524)
Q Consensus 395 ~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~~ 474 (524)
+.+..|++.|..+||||++|++|++|+.|+.+|++|++||||+.|..++|.+++++|+|+|+++++|..|.+.+++++.+
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~ 568 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDA 568 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHccC---ch-HHHHHHcCCChHH
Q 009827 475 HTPLELPDGSGWGDHIQLLQIYECWDECD---YD-VNWVKDNGLQMLV 518 (524)
Q Consensus 475 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~-~~~c~~~~~~~~~ 518 (524)
+..|. +..|||++++|+|++|.... .. .+||++|+||++.
T Consensus 569 ~~~f~----~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~ 612 (773)
T 2xau_A 569 KNIFA----HPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRS 612 (773)
T ss_dssp HHTTC----CTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHH
T ss_pred HHhcc----CCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHH
Confidence 99998 77899999999999997744 33 7899999999985
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-58 Score=508.41 Aligned_cols=494 Identities=16% Similarity=0.145 Sum_probs=357.7
Q ss_pred CchHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH--HHhCCcccceE
Q 009827 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEV 81 (524)
Q Consensus 5 pi~~~~~~i~~~-i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~--~~~~~~~~~~v 81 (524)
..+++|.+++.. +.++++++++||||||||+++++.+.......++++++++|+++++.|+++++. ..+|..++..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 457889999998 889999999999999999888877765433246799999999999999999983 23466777777
Q ss_pred eEeeecccccCcccceeecchHHHHHHHHhCCC-CCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~-l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
|+....+... .+++|+|+|||++.+.+..++. ++++++||+||+|+.. +.+ ....++.++...+ +.++|+||||+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~-~~~~l~~i~~~~~-~~~ii~lSATl 185 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPE-RGPVVESVTIRAK-RRNLLALSATI 185 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTT-THHHHHHHHHHHH-TSEEEEEESCC
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Ccc-cchHHHHHHHhcc-cCcEEEEcCCC
Confidence 7655544333 4789999999999999988774 8999999999999633 212 2233455555555 89999999999
Q ss_pred C-hHHHhhhcCCCCeeecCCcccceeEEecCCC--------------Ccch--HHHHHHHHHHHHhcCCCCCEEEecCcH
Q 009827 161 D-GEKVSKFFSNCPTLNVPGKLYPVEILHSKER--------------PTSY--LESALKTAIDIHVREPEGDVLIFMTGQ 223 (524)
Q Consensus 161 ~-~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~g~iLVF~~~~ 223 (524)
+ .+.+++|++ .+.+..+++++|+...+.... ...+ .......+.+.+ .+++++||||+|+
T Consensus 186 ~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~ 262 (715)
T 2va8_A 186 SNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSR 262 (715)
T ss_dssp TTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSH
T ss_pred CCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCH
Confidence 5 788999996 566777788888765432111 0000 122333344433 3568999999999
Q ss_pred HHHHHHHHHHHHHhhh--cCC--------------C----------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEE
Q 009827 224 DDIEKLVSKLEDKIRS--LDE--------------G----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (524)
Q Consensus 224 ~~~~~~~~~L~~~~~~--~~~--------------~----------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vl 277 (524)
++++.+++.|.+.... +.. . ......+.+|||+|+.++|..+++.|++|.++||
T Consensus 263 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vl 342 (715)
T 2va8_A 263 KMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVI 342 (715)
T ss_dssp HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999875321 000 0 0001247889999999999999999999999999
Q ss_pred EecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchh-hhhhC
Q 009827 278 VSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV-YHDEF 353 (524)
Q Consensus 278 vaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~-~~~~~ 353 (524)
|||+++++|||+|++++||++ ...||+..+.. ..|+|.++|.||+|||||.+ +|.||+++++.+ +...+
T Consensus 343 vaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 415 (715)
T 2va8_A 343 VATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVF 415 (715)
T ss_dssp EECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHH
T ss_pred EEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHH
Confidence 999999999999999999985 45677554332 56899999999999999986 899999998776 32211
Q ss_pred --cCCCCCcccccCchh------HHHHHHhcCCC-C-cccc---cccCCC-CCCHHHHHHHHHHHHHcccccCCC---CC
Q 009827 354 --LDVTVPEIQRSSLAG------SVLYLKSLDLS-D-INVL---KFDFLD-PPSSESLEDALKQLYLIDAIDENG---SI 416 (524)
Q Consensus 354 --~~~~~pei~~~~l~~------~~l~~~~~~~~-~-~~~~---~~~~~~-~p~~~~i~~a~~~L~~~g~l~~~~---~l 416 (524)
.....||+.++++.. .++.+...|.. + .++. ...|+. +|+...+..+++.|.+.|+|+.++ .+
T Consensus 416 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~ 495 (715)
T 2va8_A 416 KKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFAL 495 (715)
T ss_dssp HHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEee
Confidence 124678999988876 56666666632 1 0122 223443 455667999999999999998764 89
Q ss_pred CHHhHhhccCCCChHHHHHHHHHhhh---CCHHHHHHHHHHhcc-CCcccCCCCchhHHHhhc---cC-CCCCCCCCCC-
Q 009827 417 TSIGRTMAELPLEPSLSRMLMEANEF---GCLSQALTVAAMLSA-ETTLLPGRSKSTEKKRKH---TP-LELPDGSGWG- 487 (524)
Q Consensus 417 T~lG~~~~~lpl~p~~~~~l~~~~~~---~c~~~~l~i~a~~~~-~~~f~~~~~~~~~~~~~~---~~-~~~~~~~~~~- 487 (524)
|++|+.|+.+|++|.++++++.+... .|..+++.|+|+.+. .++|.++.+.....+... .. +. .....
T Consensus 496 t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~---~~~~~~ 572 (715)
T 2va8_A 496 TNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLI---EEPYEE 572 (715)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSS---CCCSSH
T ss_pred ChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcc---cccccc
Confidence 99999999999999999999999988 799999999988775 466665543222211111 11 11 00111
Q ss_pred -------CHHHHHHHHHHHHccCchHHHHHHcCCC
Q 009827 488 -------DHIQLLQIYECWDECDYDVNWVKDNGLQ 515 (524)
Q Consensus 488 -------D~~~~~~~~~~~~~~~~~~~~c~~~~~~ 515 (524)
.|+...-++++|.++.....+|+++++.
T Consensus 573 ~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~ 607 (715)
T 2va8_A 573 DEYSLYINALKVALIMKDWMDEVDEDTILSKYNIG 607 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred cchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCC
Confidence 4677888899999998889999999984
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6e-57 Score=493.80 Aligned_cols=492 Identities=16% Similarity=0.130 Sum_probs=365.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH--HhCCcccceEe
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEVG 82 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~--~~~~~~~~~vg 82 (524)
..+++|.++++.+.++++++++||||||||+++++.+..... .++++++++|+++++.|+++++.. .+|..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457789999999999999999999999999887776664422 356899999999999999999832 23566666667
Q ss_pred EeeecccccCcccceeecchHHHHHHHHhCCC-CCCCceEEEeCCCcCCC--ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~-l~~~~~vIiDE~H~r~~--~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
+....+.. ..+++|+|+|||++.+.+..++. ++++++||+||+|+..- ....+..++..+....+ +.++|+||||
T Consensus 104 ~~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~-~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK-ALRVIGLSAT 181 (702)
T ss_dssp SCBCCSSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT-TCEEEEEECC
T ss_pred CCCcchhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc-CceEEEECCC
Confidence 55544433 24789999999999999887764 89999999999996322 22223333444433344 8999999999
Q ss_pred CC-hHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHH---------HHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Q 009827 160 LD-GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLES---------ALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (524)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~ 229 (524)
++ .+.+++|++ ++.+..+++++|+...+.......+... ....+.+.. .+++++||||+|+++++.+
T Consensus 182 l~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 182 APNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp CTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHH
T ss_pred cCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHH
Confidence 96 688999996 6677888888888776543221111100 222333333 3568999999999999999
Q ss_pred HHHHHHHhhhcCCCC--------------------CCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCC
Q 009827 230 VSKLEDKIRSLDEGS--------------------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (524)
Q Consensus 230 ~~~L~~~~~~~~~~~--------------------~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidi 289 (524)
++.|.+......... ..+..+.++||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 259 a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 259 AVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 999987643210000 001246779999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchhhhhhCc--CCCCCccccc
Q 009827 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFL--DVTVPEIQRS 364 (524)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~~~~~~--~~~~pei~~~ 364 (524)
|++++||++ ...|| |. ..|.|.++|.||+|||||.+ +|.||+++++.+++..+. ....||+.++
T Consensus 339 p~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s 407 (702)
T 2p6r_A 339 PARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITS 407 (702)
T ss_dssp CBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCC
T ss_pred CceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcee
Confidence 999999985 45566 21 57899999999999999986 899999999988654221 2467899998
Q ss_pred Cchh------HHHHHHhcCCC-C-ccccc---ccCC----CCCCHHHHHHHHHHHHHcccccCC--CCCCHHhHhhccCC
Q 009827 365 SLAG------SVLYLKSLDLS-D-INVLK---FDFL----DPPSSESLEDALKQLYLIDAIDEN--GSITSIGRTMAELP 427 (524)
Q Consensus 365 ~l~~------~~l~~~~~~~~-~-~~~~~---~~~~----~~p~~~~i~~a~~~L~~~g~l~~~--~~lT~lG~~~~~lp 427 (524)
++.. .++.....|.. + .++.. ..|+ ++|..+.+..+++.|.+.|+|+.+ +.+|++|+.++.+|
T Consensus 408 ~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~ 487 (702)
T 2p6r_A 408 KLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLY 487 (702)
T ss_dssp CCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTT
T ss_pred ecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHh
Confidence 8876 45666666632 1 01111 1232 368889999999999999999877 78999999999999
Q ss_pred CChHHHHHHHHHhhh--CCHHHHHHHHHHhccC-CcccCCCCchhHHHhh---ccCCCCCCCCCCC-------CHHHHHH
Q 009827 428 LEPSLSRMLMEANEF--GCLSQALTVAAMLSAE-TTLLPGRSKSTEKKRK---HTPLELPDGSGWG-------DHIQLLQ 494 (524)
Q Consensus 428 l~p~~~~~l~~~~~~--~c~~~~l~i~a~~~~~-~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~-------D~~~~~~ 494 (524)
++|.++++++.+... .|..+++.++|+.+.- +.+.++.+ ....+.. ...+.... .... .|+...-
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 565 (702)
T 2p6r_A 488 IDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYP-SDFSVEYDWFLSEVKTAL 565 (702)
T ss_dssp CCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCC-CTTSTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCc-chhhhhhhhhhhhHHHHH
Confidence 999999999999998 8999999999988764 56776655 2211111 11221000 0011 5778888
Q ss_pred HHHHHHccCchHHHHHHcCCC
Q 009827 495 IYECWDECDYDVNWVKDNGLQ 515 (524)
Q Consensus 495 ~~~~~~~~~~~~~~c~~~~~~ 515 (524)
++++|.++.....+|++|++.
T Consensus 566 lL~~~~~~~~l~~i~~~~~~~ 586 (702)
T 2p6r_A 566 CLKDWIEEKDEDEICAKYGIA 586 (702)
T ss_dssp HHHHHHTTCCHHHHHHHTTCC
T ss_pred HHHHHHcCCChHHHHHHhCCc
Confidence 999999988888999999884
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.6e-54 Score=474.23 Aligned_cols=491 Identities=14% Similarity=0.125 Sum_probs=344.6
Q ss_pred CchHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH--HhCCcccceE
Q 009827 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEV 81 (524)
Q Consensus 5 pi~~~~~~i~~~-i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~--~~~~~~~~~v 81 (524)
..+++|.+++.. +.++++++++||||||||+++++.+.......++++++++|+++++.|+++++.+ .+|..++..+
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 568899999998 8899999999999999997776665533322367999999999999999999852 3455665555
Q ss_pred eEeeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCC-ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~-~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
| ....+.....+++|+|+|||++.+.+..++ +++++++||+||+|...- ..... +..++...+.+.++|+||||
T Consensus 103 G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~---~~~ll~~l~~~~~ii~lSAT 178 (720)
T 2zj8_A 103 G-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGAT---LEVILAHMLGKAQIIGLSAT 178 (720)
T ss_dssp S-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHH---HHHHHHHHBTTBEEEEEECC
T ss_pred C-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHH---HHHHHHHhhcCCeEEEEcCC
Confidence 5 222333334578999999999999887766 489999999999994221 12222 22233222237999999999
Q ss_pred C-ChHHHhhhcCCCCeeecCCcccceeEEecCCCCcch-------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 009827 160 L-DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (524)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~ 231 (524)
+ +.+.+++|++ .+.+..+.++.|+...+.......+ .......+.+.+ .+++++||||+|+++++.++.
T Consensus 179 l~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~ 255 (720)
T 2zj8_A 179 IGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVAL 255 (720)
T ss_dssp CSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHH
T ss_pred cCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHH
Confidence 9 5688999995 4456667777776654322111111 111122222222 246899999999999999999
Q ss_pred HHHHHhhhcCC------------C-----------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccC
Q 009827 232 KLEDKIRSLDE------------G-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (524)
Q Consensus 232 ~L~~~~~~~~~------------~-----------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gid 288 (524)
.|.+....... . ......+.++||+|++++|..+++.|++|.++|||||+++++|||
T Consensus 256 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvd 335 (720)
T 2zj8_A 256 ELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGIN 335 (720)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCC
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCC
Confidence 99875322100 0 000124888999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchhhhhh---CcCCCCCccc
Q 009827 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDE---FLDVTVPEIQ 362 (524)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~~~~---~~~~~~pei~ 362 (524)
+|++++||+.+ ..|| ..| ..|.|.++|.||+|||||.+ +|.||.++++.+.+.. +.....+++.
T Consensus 336 ip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 336 TPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLF 405 (720)
T ss_dssp CCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCC
T ss_pred CCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcE
Confidence 99999999843 3444 222 25889999999999999985 7999999988774321 3333333333
Q ss_pred cc-----CchhHHHHHHhcCCCCc-----ccccccCC------CCCCHHHHHHHHHHHHHccccc-CCC---CCCHHhHh
Q 009827 363 RS-----SLAGSVLYLKSLDLSDI-----NVLKFDFL------DPPSSESLEDALKQLYLIDAID-ENG---SITSIGRT 422 (524)
Q Consensus 363 ~~-----~l~~~~l~~~~~~~~~~-----~~~~~~~~------~~p~~~~i~~a~~~L~~~g~l~-~~~---~lT~lG~~ 422 (524)
.. .|...++.....+.... +...+.|+ ++|..+.+..+++.|.+.|+|+ .++ .+|++|+.
T Consensus 406 s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~ 485 (720)
T 2zj8_A 406 SQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIR 485 (720)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHH
T ss_pred eecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHH
Confidence 22 23344555555543210 01112232 3334578999999999999998 655 79999999
Q ss_pred hccCCCChHHHHHHHHHhhh----CCHHHHHHHHHHhcc-CCcccCCCCchhHHHhh-c--------cCCCCCCCCCCC-
Q 009827 423 MAELPLEPSLSRMLMEANEF----GCLSQALTVAAMLSA-ETTLLPGRSKSTEKKRK-H--------TPLELPDGSGWG- 487 (524)
Q Consensus 423 ~~~lpl~p~~~~~l~~~~~~----~c~~~~l~i~a~~~~-~~~f~~~~~~~~~~~~~-~--------~~~~~~~~~~~~- 487 (524)
|+.+|++|..+++++.+... .|..+++.|+|+.++ .+.|.++.+.....+.. . ..+. .....
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~---~~~~~~ 562 (720)
T 2zj8_A 486 TAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYI---SGYDPY 562 (720)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTS---SCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhcccccccccccc---ccccch
Confidence 99999999999999999987 899999999999886 56776654332221110 0 1111 00011
Q ss_pred ------CHHHHHHHHHHHHccCchHHHHHHcCCC
Q 009827 488 ------DHIQLLQIYECWDECDYDVNWVKDNGLQ 515 (524)
Q Consensus 488 ------D~~~~~~~~~~~~~~~~~~~~c~~~~~~ 515 (524)
.|+...-++++|.++......+++|++.
T Consensus 563 ~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~ 596 (720)
T 2zj8_A 563 LERKFFRAFKTALVLLAWINEVPEGEIVEKYSVE 596 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 4677888899999988878888888873
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-42 Score=402.96 Aligned_cols=485 Identities=15% Similarity=0.140 Sum_probs=308.6
Q ss_pred HHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcC----------CCCCcEEEEcccchhHHHHHHHHHHHHhC--
Q 009827 8 QYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHG----------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (524)
Q Consensus 8 ~~~~~i~~~-i~~~~~~ii~apTGsGKTt~l~~~l~~~~----------~~~~~~i~~~~P~r~la~~~~~~v~~~~~-- 74 (524)
..|.+++.. +.++++++++||||||||..+...+.... ...+.+++++.|+++++.|+++.+.+.++
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhC
Confidence 467777665 56899999999999999954433332210 12356899999999999999999877653
Q ss_pred -CcccceEeEeeecccccCcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCChHHH-HHHHHHH---Hhh
Q 009827 75 -VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDIL-LGLVKRL---VNL 146 (524)
Q Consensus 75 -~~~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~---~l~~~~~vIiDE~H~r~~~~~~~-~~~l~~l---~~~ 146 (524)
..++...|. ..........++|+++|||.+..++.+.. +++++++|||||+|...-+.+.. ..++.++ ...
T Consensus 162 gi~V~~~tGd-~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~ 240 (1724)
T 4f92_B 162 GITVAELTGD-HQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEM 240 (1724)
T ss_dssp TCCEEECCSS-CSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECC-CCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHh
Confidence 444444442 11222223568999999999865544332 57899999999999533233332 3333333 233
Q ss_pred cccCcEEEEEeccC-ChHHHhhhcCCCC---eeecC--CcccceeEEecCCCCcchHH--HHHH-HHHHH-HhcCCCCCE
Q 009827 147 RASKLKILITSATL-DGEKVSKFFSNCP---TLNVP--GKLYPVEILHSKERPTSYLE--SALK-TAIDI-HVREPEGDV 216 (524)
Q Consensus 147 ~~~~~~ii~~SAT~-~~~~~~~~~~~~~---~~~i~--~~~~~v~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~~g~i 216 (524)
.+.++|+|+||||+ |.+++++|++..+ ...+. .|+.|++.++.......... .... .+... .....++++
T Consensus 241 ~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (1724)
T 4f92_B 241 TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV 320 (1724)
T ss_dssp HTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCE
T ss_pred CCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcE
Confidence 44589999999999 6688999997642 23333 35556555544332222211 1111 12222 222346799
Q ss_pred EEecCcHHHHHHHHHHHHHHhhhcCCC---------------------------CCCCeEEEEecCCCCHHHHhcccCCC
Q 009827 217 LIFMTGQDDIEKLVSKLEDKIRSLDEG---------------------------SCMDAVILPLHGSLPPEMQVRVFSPP 269 (524)
Q Consensus 217 LVF~~~~~~~~~~~~~L~~~~~~~~~~---------------------------~~~~~~v~~lh~~l~~~~r~~v~~~f 269 (524)
||||+||++++.+++.|.+........ .....++..|||||++++|..+++.|
T Consensus 321 LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F 400 (1724)
T 4f92_B 321 LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLF 400 (1724)
T ss_dssp EEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHH
Confidence 999999999999999998754321100 01133578899999999999999999
Q ss_pred CCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCc
Q 009827 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPS 346 (524)
Q Consensus 270 ~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~ 346 (524)
++|.++|||||+++++|||+|++++||.. ...|++..|. ..++|..+|.||+|||||. ..|.++.+.++
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 99999999999999999999999999962 4568876653 3578999999999999997 47999999876
Q ss_pred hhhhhh--CcCCCCC--cccccCchhHHHHHHhcCC-CCc--------------------ccccc--------cCCCCCC
Q 009827 347 TVYHDE--FLDVTVP--EIQRSSLAGSVLYLKSLDL-SDI--------------------NVLKF--------DFLDPPS 393 (524)
Q Consensus 347 ~~~~~~--~~~~~~p--ei~~~~l~~~~l~~~~~~~-~~~--------------------~~~~~--------~~~~~p~ 393 (524)
++.... +.....| .-+...+...++....+|. .+. ....+ +.++...
T Consensus 473 ~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~ 552 (1724)
T 4f92_B 473 GELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRR 552 (1724)
T ss_dssp TTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHH
Confidence 554331 2222222 1111233333333222221 110 00000 1111112
Q ss_pred HHHHHHHHHHHHHccccc--C-CC--CCCHHhHhhccCCCChHHHHHHHHHhhhCC-HHHHHHHHHHhccCCcccCCCCc
Q 009827 394 SESLEDALKQLYLIDAID--E-NG--SITSIGRTMAELPLEPSLSRMLMEANEFGC-LSQALTVAAMLSAETTLLPGRSK 467 (524)
Q Consensus 394 ~~~i~~a~~~L~~~g~l~--~-~~--~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c-~~~~l~i~a~~~~~~~f~~~~~~ 467 (524)
.+.+..++..|.+.|+|. + +| .+|++|+.++.++++|..++.+.......+ ..+++.++|+.+.-.......++
T Consensus 553 ~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E 632 (1724)
T 4f92_B 553 LDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEE 632 (1724)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGG
T ss_pred HHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHH
Confidence 345778999999999994 2 23 689999999999999999999998876554 55777777765544322222333
Q ss_pred hhHHHhh--ccCCCCCCCCCCCCHHHHHHHHHHHHcc
Q 009827 468 STEKKRK--HTPLELPDGSGWGDHIQLLQIYECWDEC 502 (524)
Q Consensus 468 ~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 502 (524)
..+.+.. +..+.. .+.-...+....-+.++|..+
T Consensus 633 ~~~l~~l~~~~~~~~-~~~~~~~~~Kv~~Llq~~i~~ 668 (1724)
T 4f92_B 633 KLELQKLLERVPIPV-KESIEEPSAKINVLLQAFISQ 668 (1724)
T ss_dssp HHHHHHHHHHSSSCC-CSCCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCc-CCCCCChHHHHHHHHHHHHcC
Confidence 3332221 222221 112223344555567888763
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-41 Score=395.52 Aligned_cols=486 Identities=15% Similarity=0.099 Sum_probs=313.0
Q ss_pred HHHHHHHHHh-ccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEee
Q 009827 8 QYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (524)
Q Consensus 8 ~~~~~i~~~i-~~~~~~ii~apTGsGKTt~l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~ 85 (524)
+.|.+++..+ ..+++++++||||||||+.....+.... ...+++++++.|+++++.|+++.+.+.++...+..++...
T Consensus 929 piQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~lt 1008 (1724)
T 4f92_B 929 PIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLT 1008 (1724)
T ss_dssp HHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECC
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEE
Confidence 4577777776 5678999999999999966555554332 2345689999999999999999998887765555555322
Q ss_pred e---cccccCcccceeecchHHHHHHHHhC---CCCCCCceEEEeCCCcCCCChHH-HHHH---HHHHHhhcccCcEEEE
Q 009827 86 R---FEDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLNTDI-LLGL---VKRLVNLRASKLKILI 155 (524)
Q Consensus 86 ~---~~~~~~~~~~I~~~T~g~l~~~l~~~---~~l~~~~~vIiDE~H~r~~~~~~-~~~~---l~~l~~~~~~~~~ii~ 155 (524)
+ .+.....+.+|+++|||++..++... ..++++++||+||+|...-+.+. +..+ ++.+....+.+.|+|+
T Consensus 1009 Gd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~ 1088 (1724)
T 4f92_B 1009 GETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVA 1088 (1724)
T ss_dssp SCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEE
T ss_pred CCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEE
Confidence 2 11122356899999999987666432 25789999999999953323332 2222 3333344455899999
Q ss_pred EeccC-ChHHHhhhcCCC--CeeecC--CcccceeEEecCCCCcchHHH---HHHHHH-HHHhcCCCCCEEEecCcHHHH
Q 009827 156 TSATL-DGEKVSKFFSNC--PTLNVP--GKLYPVEILHSKERPTSYLES---ALKTAI-DIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 156 ~SAT~-~~~~~~~~~~~~--~~~~i~--~~~~~v~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~g~iLVF~~~~~~~ 226 (524)
||||+ |.+++++|++.. ..+.+. .|+.|++.+............ ....+. .+....+.+++||||+|++.+
T Consensus 1089 lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~ 1168 (1724)
T 4f92_B 1089 LSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQT 1168 (1724)
T ss_dssp EESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHH
T ss_pred EeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHH
Confidence 99999 678999999753 333333 355566555433222222111 111111 122335678999999999999
Q ss_pred HHHHHHHHHHhhhcCCC------------------------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc
Q 009827 227 EKLVSKLEDKIRSLDEG------------------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~------------------------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i 282 (524)
+.++..|.......... .....+|..|||||++++|..+++.|++|.++|||||++
T Consensus 1169 ~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~t 1248 (1724)
T 4f92_B 1169 RLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1248 (1724)
T ss_dssp HHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGG
T ss_pred HHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChH
Confidence 99998886654321100 001235788999999999999999999999999999999
Q ss_pred cccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchhhhhhCcCCCCC
Q 009827 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFLDVTVP 359 (524)
Q Consensus 283 ~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~~~~~~~~~~p 359 (524)
+++|||+|++++||.. ...||... ....+.+..+|.||+|||||.+ .|.|+.++...+..........|
T Consensus 1249 lA~GVnlPa~~VVI~~----~~~~dg~~----~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~ 1320 (1724)
T 4f92_B 1249 LCWGMNVAAHLVIIMD----TQYYNGKI----HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEP 1320 (1724)
T ss_dssp GSSSCCCCBSEEEEEC----SEEEETTT----TEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSC
T ss_pred HHcCCCCCccEEEEec----CccccCcc----cccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCC
Confidence 9999999999999963 34565543 2335789999999999999983 79999998665443311111223
Q ss_pred cccccCc----hhHHHHHHhcCCCCc-----ccccccC-------------CC--------CCCHHHHHHHHHHHHHccc
Q 009827 360 EIQRSSL----AGSVLYLKSLDLSDI-----NVLKFDF-------------LD--------PPSSESLEDALKQLYLIDA 409 (524)
Q Consensus 360 ei~~~~l----~~~~l~~~~~~~~~~-----~~~~~~~-------------~~--------~p~~~~i~~a~~~L~~~g~ 409 (524)
+...+.| ...++.....+.-.. +.....| +. ....+.++.+++.|.+.|+
T Consensus 1321 ~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~ 1400 (1724)
T 4f92_B 1321 LPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKC 1400 (1724)
T ss_dssp BCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 3334433 334444333332110 0000011 11 1123456789999999999
Q ss_pred cc--CCC--CCCHHhHhhccCCCChHHHHHHHHHhhhCC-HHHHHHHHHHhccC-CcccCCCCchhHHH-hhccCCCCCC
Q 009827 410 ID--ENG--SITSIGRTMAELPLEPSLSRMLMEANEFGC-LSQALTVAAMLSAE-TTLLPGRSKSTEKK-RKHTPLELPD 482 (524)
Q Consensus 410 l~--~~~--~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c-~~~~l~i~a~~~~~-~~f~~~~~~~~~~~-~~~~~~~~~~ 482 (524)
|+ +++ .+|++|++++.++++|..++++..+....+ ..++|.++|....- +...+..+.....+ ..+..+....
T Consensus 1401 I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~ 1480 (1724)
T 4f92_B 1401 ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNN 1480 (1724)
T ss_dssp EEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSS
T ss_pred EEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCc
Confidence 95 344 579999999999999999999998877665 56677777655443 22232222111111 1111221111
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 009827 483 GSGWGDHIQLLQIYECWDE 501 (524)
Q Consensus 483 ~~~~~D~~~~~~~~~~~~~ 501 (524)
....+-|....-+.++|..
T Consensus 1481 ~~~~~~~~K~~lLlqa~~~ 1499 (1724)
T 4f92_B 1481 PKFNDPHVKTNLLLQAHLS 1499 (1724)
T ss_dssp CCTTCHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHC
Confidence 1122336666667788876
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.4e-41 Score=344.98 Aligned_cols=318 Identities=16% Similarity=0.161 Sum_probs=232.4
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHH-HHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009827 6 ILQYEETIVETVEQN--PVVVVIGETGSGKSTQLS-QILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 6 i~~~~~~i~~~i~~~--~~~ii~apTGsGKTt~l~-~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~v 81 (524)
.+.+|.+++..+..+ ++++++||||||||.... .++.... ...+.+++++.|+++++.|+++.+.+......+..+
T Consensus 48 ~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 127 (412)
T 3fht_A 48 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 127 (412)
T ss_dssp CCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceE
Confidence 467888899988876 899999999999995433 2333322 233458999999999999999988776544334445
Q ss_pred eEeeeccc---ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 82 GYAIRFED---RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 82 g~~~~~~~---~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
++...... ......+|+++||+.+.+.+.... .+.++++||+||+|....+..+. ..+..+....+.+.++++|
T Consensus 128 ~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 206 (412)
T 3fht_A 128 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ-DQSIRIQRMLPRNCQMLLF 206 (412)
T ss_dssp EEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTH-HHHHHHHHTSCTTCEEEEE
T ss_pred EEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcH-HHHHHHHhhCCCCceEEEE
Confidence 44333222 223457899999999999886543 56899999999999422222332 2344555555568999999
Q ss_pred eccCChH---HHhhhcCCCCeeecCCcc---cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009827 157 SATLDGE---KVSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 157 SAT~~~~---~~~~~~~~~~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
|||++.. ....++.+...+.+.... ..+...+...... ......+..+......+++||||+++++++.++
T Consensus 207 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 207 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH---HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred EeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 9999774 244555555554443322 2223333222222 223334444444455679999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCC
Q 009827 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~ 310 (524)
+.|.+. +..+..+||+|+.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|....+
T Consensus 284 ~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~---- 349 (412)
T 3fht_A 284 AELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG---- 349 (412)
T ss_dssp HHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS----
T ss_pred HHHHhC----------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC----
Confidence 999886 677888999999999999999999999999999999999999999999999998764432
Q ss_pred CccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009827 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 311 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
+.|..+|+||+|||||. .+|.|+.+++..+.
T Consensus 350 --------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 350 --------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 381 (412)
T ss_dssp --------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred --------CcchheeecccCcccCCCCCceEEEEEcChhh
Confidence 24788999999999998 67999999986653
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=380.76 Aligned_cols=328 Identities=15% Similarity=0.164 Sum_probs=242.8
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
.++.+.+|.+++..+.+|++++++||||||||+.....+.... ..++++++++|+++++.|+++++.+.++ . +|
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~----Vg 255 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-D----VG 255 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-S----EE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC-C----cc
Confidence 3578899999999999999999999999999965554444332 2467999999999999999999988877 3 34
Q ss_pred EeeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
+ ...+.....+++|+|+|||+|.+.+.... .+.++++|||||+| +..+.++... +..++...+.+.++|+||||++
T Consensus 256 l-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~-~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 256 L-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVV-WEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp E-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHH-HHHHHHHSCTTSEEEEEECSCS
T ss_pred E-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHH-HHHHHHhcCCCceEEEEcCCCC
Confidence 3 22233445678999999999999987766 48899999999999 6666654433 5555666666899999999994
Q ss_pred -hHHHhhhcCC-----CCeeecCCcccceeEEecCCCC----------cc-----hH-----------------------
Q 009827 162 -GEKVSKFFSN-----CPTLNVPGKLYPVEILHSKERP----------TS-----YL----------------------- 197 (524)
Q Consensus 162 -~~~~~~~~~~-----~~~~~i~~~~~~v~~~~~~~~~----------~~-----~~----------------------- 197 (524)
...+..|++. ..++....+..|+..++..... .. +.
T Consensus 333 n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 412 (1108)
T 3l9o_A 333 NAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK 412 (1108)
T ss_dssp SCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------
T ss_pred CHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccc
Confidence 4567777642 3455556677776654422110 00 00
Q ss_pred -------------HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCC---------------------
Q 009827 198 -------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG--------------------- 243 (524)
Q Consensus 198 -------------~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~--------------------- 243 (524)
...+..++..+.....+++||||+++++|+.++..|..........
T Consensus 413 ~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 492 (1108)
T 3l9o_A 413 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 492 (1108)
T ss_dssp ------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTC
T ss_pred ccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhh
Confidence 2233344555555667899999999999999999886531110000
Q ss_pred --------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcccc
Q 009827 244 --------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (524)
Q Consensus 244 --------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l 315 (524)
......+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.+. +. .
T Consensus 493 l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~----d~------~ 562 (1108)
T 3l9o_A 493 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW----DG------Q 562 (1108)
T ss_dssp CHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEE----SS------S
T ss_pred hhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCccc----Cc------c
Confidence 00012278899999999999999999999999999999999999999999999875432 22 1
Q ss_pred ceeeecHHhHHhhccccCCCC---CCeEEEecCchhh
Q 009827 316 DVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVY 349 (524)
Q Consensus 316 ~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~ 349 (524)
...|+|..+|+||+|||||.+ .|.||.++++...
T Consensus 563 ~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 563 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 245889999999999999986 8999999977643
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=349.80 Aligned_cols=313 Identities=17% Similarity=0.205 Sum_probs=219.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC--CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~--~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
+.+.+|.+++..+.+++++++.||||||||+.....+..... ..+.+++++.|+++++.|+++.+.+... ..+..++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-YMGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG-GSCCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc-ccCceEE
Confidence 567899999999999999999999999999654444443322 2456899999999999999998876542 2222222
Q ss_pred Eeeeccc-------ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009827 83 YAIRFED-------RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 83 ~~~~~~~-------~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii 154 (524)
....... ......+|+++||+.+.+.+.... .+.++++||+||+|+ ..+.++. ..+..++...+.+.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~-~~~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFK-DQIYDIFQKLNSNTQVV 218 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTH-HHHHHHHTTSCTTCEEE
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcH-HHHHHHHHhCCCCCeEE
Confidence 2211111 112467999999999999887665 678899999999994 3333333 33455666665689999
Q ss_pred EEeccCChHH---HhhhcCCCCeeecCCccc---ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 009827 155 ITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (524)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~ 228 (524)
+||||++.+. ...++.+...+.+..... .+...+......+. ....+..+......+++||||+++++++.
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred EEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 9999997653 345555544444433221 22223332222232 23344455555677899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC
Q 009827 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (524)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~ 308 (524)
+++.|.+. ++.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 296 l~~~l~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~------ 359 (414)
T 3eiq_A 296 LTEKMHAR----------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------ 359 (414)
T ss_dssp HHHHHHTT----------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS------
T ss_pred HHHHHHhc----------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC------
Confidence 99999875 67788899999999999999999999999999999999999999999999987644
Q ss_pred CCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 309 ~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|.||+|||||. ++|.||.++++++...
T Consensus 360 ------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 360 ------------NRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp ------------STHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred ------------CHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 777999999999999 7899999999887654
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.9e-40 Score=338.74 Aligned_cols=319 Identities=17% Similarity=0.190 Sum_probs=232.4
Q ss_pred CchHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHhc-C-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009827 5 PILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRH-G-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~--~~~ii~apTGsGKTt~l~~~l~~~-~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~ 80 (524)
..+++|.++++.+..+ +++++++|||||||......+... . ...+.+++++.|+++++.|+++.+.+... ..+..
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK-FTKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhc-ccCee
Confidence 3577899999999887 899999999999995444333332 2 22456899999999999999998866542 22222
Q ss_pred EeEee--ecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 81 VGYAI--RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 81 vg~~~--~~~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
++... ........+.+|+++||+.+.+.+.... .+.++++||+||+|+...+.++. ..+..+....+.+.++++||
T Consensus 106 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~-~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 106 SQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLG-DQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp EEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHH-HHHHHHHHTSCTTCEEEEEE
T ss_pred EEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccH-HHHHHHHHhCCCCcEEEEEE
Confidence 22211 1222233468999999999998886654 68899999999999532223333 33455556566689999999
Q ss_pred ccCChH---HHhhhcCCCCeeecCCccc---ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 009827 158 ATLDGE---KVSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (524)
Q Consensus 158 AT~~~~---~~~~~~~~~~~~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~ 231 (524)
||++.. ....++.+...+.+..... .+...+..... .......+..+......+++||||+++++++.+++
T Consensus 185 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 261 (395)
T 3pey_A 185 ATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN---EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYG 261 (395)
T ss_dssp SCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS---HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc---hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHH
Confidence 999763 2344554444444333222 22222322221 22333444445555567899999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCC
Q 009827 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (524)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~ 311 (524)
.|.+. +..+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|+
T Consensus 262 ~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~--------- 322 (395)
T 3pey_A 262 KLKSE----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT--------- 322 (395)
T ss_dssp HHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB---------
T ss_pred HHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC---------
Confidence 99876 66788899999999999999999999999999999999999999999999988765
Q ss_pred ccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009827 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 312 ~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
+...+.|..+|+||+|||||. ++|.|+.+++..+..
T Consensus 323 ---~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 359 (395)
T 3pey_A 323 ---LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSF 359 (395)
T ss_dssp ---CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHH
T ss_pred ---CCcCCCCHHHhhHhccccccCCCCceEEEEEechHHH
Confidence 222356899999999999999 679999999865543
No 11
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.7e-41 Score=357.27 Aligned_cols=297 Identities=21% Similarity=0.284 Sum_probs=219.3
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
.||++.+|++++..+.++++++++||||||||+++++.+... +.++++++|+|+++.|+++++++.++..++..+|
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG 290 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTG 290 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECS
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 479999999999999999999999999999998777776652 4589999999999999999999999988777777
Q ss_pred EeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc--CcEEEEEeccC
Q 009827 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS--KLKILITSATL 160 (524)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~--~~~ii~~SAT~ 160 (524)
+.. ...+.+|+++|||+|++ .....+.++++|||||+|+++ .++... +..++...+. ...+++||||+
T Consensus 291 ~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~--~~~~~~-l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 291 VRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTD--STTILG-IGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp SCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCS--HHHHHH-HHHHHHHTTTTTCSEEEEEESSC
T ss_pred cEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcC--ccHHHH-HHHHHHhhhhcCCceEEEECCCC
Confidence 533 34568999999999732 122267789999999999654 444322 3333333332 33478889999
Q ss_pred ChHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 009827 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~ 240 (524)
+.. +. .....+.. +...+.. ...+...... ......+++||||+++++++.+++.|.+.
T Consensus 361 ~~~-i~--~~~p~i~~-------v~~~~~~--~i~~~~~~~~-----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---- 419 (666)
T 3o8b_A 361 PGS-VT--VPHPNIEE-------VALSNTG--EIPFYGKAIP-----IEAIRGGRHLIFCHSKKKCDELAAKLSGL---- 419 (666)
T ss_dssp TTC-CC--CCCTTEEE-------EECBSCS--SEEETTEEEC-----GGGSSSSEEEEECSCHHHHHHHHHHHHTT----
T ss_pred Ccc-cc--cCCcceEE-------Eeecccc--hhHHHHhhhh-----hhhccCCcEEEEeCCHHHHHHHHHHHHhC----
Confidence 753 11 00111111 1111100 0000000000 11235789999999999999999999875
Q ss_pred CCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccccee----ecCCCCccccc
Q 009827 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ----YNPSSGMYSLD 316 (524)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~----~~~~~~~~~l~ 316 (524)
++.+..+||+|++++ |+++..+||||||++++|||+| |++|||+|+.+..+ |||..++.. .
T Consensus 420 ------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~ 484 (666)
T 3o8b_A 420 ------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-T 484 (666)
T ss_dssp ------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-E
T ss_pred ------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-c
Confidence 678899999999875 3456669999999999999997 99999999988665 556666654 3
Q ss_pred eeeecHHhHHhhccccCCCCCCeEEEecCchhhh
Q 009827 317 VVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (524)
Q Consensus 317 ~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 350 (524)
..|.|.++|+||+||+||.++|. |.||++++..
T Consensus 485 ~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 67999999999999999988999 9999887654
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7e-40 Score=338.56 Aligned_cols=308 Identities=17% Similarity=0.212 Sum_probs=224.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc---C---CCCCcEEEEcccchhHHHHHHHHHHHHhC---C
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH---G---YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~---~---~~~~~~i~~~~P~r~la~~~~~~v~~~~~---~ 75 (524)
.+++|.+.+..+.+|++++++||||||||. ++.+++... . ...+.+++++.|+++++.|+++.+.+... .
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 158 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCc
Confidence 467888999999999999999999999993 333233221 1 12355899999999999999988866542 3
Q ss_pred cccceEeEeeec--ccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc--ccC
Q 009827 76 RLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--ASK 150 (524)
Q Consensus 76 ~~~~~vg~~~~~--~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~--~~~ 150 (524)
.++..+|..... ......+.+|+++|||.|.+.+.... .+.+++++|+|||| +.++.++... +..++... +.+
T Consensus 159 ~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-~~~i~~~~~~~~~ 236 (434)
T 2db3_A 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSED-MRRIMTHVTMRPE 236 (434)
T ss_dssp CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHHCTTSCSS
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHH-HHHHHHhcCCCCC
Confidence 333333311110 11123467999999999999886554 68999999999999 5666665444 45555442 347
Q ss_pred cEEEEEeccCChHH---HhhhcCCCCeeecCC---cccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 009827 151 LKILITSATLDGEK---VSKFFSNCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (524)
Q Consensus 151 ~~ii~~SAT~~~~~---~~~~~~~~~~~~i~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~ 224 (524)
.+++++|||++.+. ...++.+...+.+.. ....+...+......+. ...+..+..... +++||||++++
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~~l~~~~-~~~lVF~~t~~ 311 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAK----RSKLIEILSEQA-DGTIVFVETKR 311 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGH----HHHHHHHHHHCC-TTEEEECSSHH
T ss_pred ceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHH----HHHHHHHHHhCC-CCEEEEEeCcH
Confidence 89999999997642 445665544443332 22233333332222222 222333333333 35999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccce
Q 009827 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (524)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~ 304 (524)
+++.+++.|.+. ++.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||++++|.
T Consensus 312 ~a~~l~~~L~~~----------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~-- 379 (434)
T 2db3_A 312 GADFLASFLSEK----------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS-- 379 (434)
T ss_dssp HHHHHHHHHHHT----------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS--
T ss_pred HHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC--
Confidence 999999999875 67788999999999999999999999999999999999999999999999988754
Q ss_pred eecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009827 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 305 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
+..+|+||+||+||. +.|.|+.++++++
T Consensus 380 ----------------~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 380 ----------------KIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp ----------------SHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred ----------------CHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 778999999999999 7899999998543
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.7e-39 Score=331.23 Aligned_cols=311 Identities=18% Similarity=0.168 Sum_probs=229.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHH-hcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~-~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
.+.+|.++++.+.+++++++.+|||||||......+. ... ...+.+++++.|+++++.|+++.+.+.... .+..++.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEE
Confidence 6789999999999999999999999999954333333 222 224558899999999999999988665432 2222221
Q ss_pred eeecc------cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 84 AIRFE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 84 ~~~~~------~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
..... .......+|+++||+.+.+.+.... .+.++++||+||+| +..+.++. ..+..+....+.+.++++|
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~-~~~~~i~~~~~~~~~~i~l 200 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDFK-TIIEQILSFLPPTHQSLLF 200 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHHH-HHHHHHHTTSCSSCEEEEE
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-HhhhhchH-HHHHHHHHhCCcCceEEEE
Confidence 11111 1123467899999999998876554 68899999999999 45555543 4466777666668899999
Q ss_pred eccCChH---HHhhhcCCCCeeecCCcc--cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 009827 157 SATLDGE---KVSKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (524)
Q Consensus 157 SAT~~~~---~~~~~~~~~~~~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~ 231 (524)
|||++.. .+..++.....+.+.... ..+...+........ ...+..+......+++||||+++++++.+++
T Consensus 201 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 201 SATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQK----LHCLNTLFSKLQINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSSHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhH----HHHHHHHHhhcCCCcEEEEEecHHHHHHHHH
Confidence 9999764 244555544333332221 122223322222221 2222333334566799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCC
Q 009827 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (524)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~ 311 (524)
.|.+. ++.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 277 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~--------- 337 (400)
T 1s2m_A 277 KITDL----------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK--------- 337 (400)
T ss_dssp HHHHH----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS---------
T ss_pred HHHhc----------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC---------
Confidence 99886 67788999999999999999999999999999999999999999999999987644
Q ss_pred ccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 312 ~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+||+||. ++|.||.++++++...
T Consensus 338 ---------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 338 ---------TAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp ---------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred ---------CHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 788999999999999 7999999999887654
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.9e-40 Score=336.74 Aligned_cols=312 Identities=16% Similarity=0.216 Sum_probs=228.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~-~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
.+++|.+++..+.+++++++.+|||||||.... .++.... ...+.+++++.|+++++.|+++.+.+.. ...+..++.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG-DYMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh-ccCCeEEEE
Confidence 567899999999999999999999999994433 3333222 2245689999999999999999886543 222333332
Q ss_pred eeeccc------ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 84 AIRFED------RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 84 ~~~~~~------~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
...... ......+|+++||+.+...+.... .+.++++||+||+|+ ..+.++.. .+..++...+.+.+++++
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~-~~~~i~~~~~~~~~~i~~ 216 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFKE-QIYDVYRYLPPATQVVLI 216 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTHH-HHHHHHTTSCTTCEEEEE
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhHH-HHHHHHHhCccCceEEEE
Confidence 211111 112356899999999998886654 678899999999994 44444433 355666666668999999
Q ss_pred eccCChHH---HhhhcCCCCeeecCCcc---cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009827 157 SATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
|||++.+. ...++.+...+.+.... ..+...+......++.... +..+......+++||||+++++++.++
T Consensus 217 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 217 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT---LCDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH---HHHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH---HHHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 99997653 34555544333333221 2233333322223322222 333333344579999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCC
Q 009827 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~ 310 (524)
+.|.+. ++.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 294 ~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~-------- 355 (410)
T 2j0s_A 294 EKMREA----------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN-------- 355 (410)
T ss_dssp HHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS--------
T ss_pred HHHHhC----------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC--------
Confidence 999876 67788899999999999999999999999999999999999999999999987654
Q ss_pred CccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 311 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+||+||. ++|.|+.++++++...
T Consensus 356 ----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 356 ----------NRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387 (410)
T ss_dssp ----------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred ----------CHHHHHHhcccccCCCCceEEEEEecHHHHHH
Confidence 778999999999999 7999999998877544
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.3e-41 Score=350.57 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHH-HHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 7 LQYEETIVETVEQN--PVVVVIGETGSGKSTQLS-QILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 7 ~~~~~~i~~~i~~~--~~~ii~apTGsGKTt~l~-~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
+.+|.+++..+..+ ++++++||||||||.... .++..... ..+.+++++.|+++++.|+++.+.+......+..++
T Consensus 116 ~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 195 (479)
T 3fmp_B 116 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (479)
T ss_dssp CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE
T ss_pred CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE
Confidence 45588899988876 999999999999994433 33332222 233489999999999999998887665543333444
Q ss_pred Eeeecc---cccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCC-hHHHHHHHHHHHhhcccCcEEEEE
Q 009827 83 YAIRFE---DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 83 ~~~~~~---~~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~-~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
+..... .......+|+++||+.+.+.+.... .+.++++||+||+|+ ..+ ..+.. .+..+....+.+.+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~-~~~~~~~~~-~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 196 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQD-QSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp EESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-HHTSTTHHH-HHHHHHTTSCTTSEEEEE
T ss_pred EEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH-HhhcCCcHH-HHHHHHhhCCccceEEEE
Confidence 333322 2223456899999999999886644 458999999999994 333 33333 345566666668999999
Q ss_pred eccCChHH---HhhhcCCCCeeecCCccccee---EEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009827 157 SATLDGEK---VSKFFSNCPTLNVPGKLYPVE---ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~i~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
|||++.+. ...++.+...+.+........ ..+...... ......+..+......+++||||+++++++.++
T Consensus 274 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp ESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH---HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 99998753 335555544444433221111 111111111 122223333333445679999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCC
Q 009827 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~ 310 (524)
+.|... +..+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||++++|....+
T Consensus 351 ~~L~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~---- 416 (479)
T 3fmp_B 351 AELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG---- 416 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhC----------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCcc----
Confidence 999875 677889999999999999999999999999999999999999999999999988763321
Q ss_pred CccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009827 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 311 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
+.|..+|+||+|||||. .+|.|+.+++..+.
T Consensus 417 --------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 417 --------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp ----------------------------------------
T ss_pred --------CCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 34777999999999998 67999999986653
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.7e-39 Score=329.07 Aligned_cols=311 Identities=17% Similarity=0.153 Sum_probs=228.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l-~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
.+++|.+++..+.+++++++.+|||+|||... ..++.... ...+.+++++.|++.++.|+++.+.+......+..++.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 67899999999999999999999999999433 33333322 22355899999999999999998876653322233332
Q ss_pred eeecccc-------cCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009827 84 AIRFEDR-------TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 84 ~~~~~~~-------~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~ 155 (524)
....... .....+|+++||+.+...+.... .+.++++||+||+|...-+.++... +..++...+.+.++++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 189 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMM 189 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHH-HHHHHHTSCSSSEEEE
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHH-HHHHHhhCCCCceEEE
Confidence 1111110 01236899999999998886654 6889999999999953333444443 5566666666899999
Q ss_pred EeccCChH---HHhhhcCCCCeeecCCcc----cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 009827 156 TSATLDGE---KVSKFFSNCPTLNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (524)
Q Consensus 156 ~SAT~~~~---~~~~~~~~~~~~~i~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~ 228 (524)
+|||++.. .+..++.....+.+.... ..+...+......+.. ..+..+......+++||||+++++++.
T Consensus 190 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN----RKLFDLLDVLEFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp EESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH----HHHHHHHHHSCCSEEEEECSCHHHHHH
T ss_pred EEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH----HHHHHHHHhcCCCcEEEEeCcHHHHHH
Confidence 99999653 355666554444433221 1223333322222222 222333333467899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC
Q 009827 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (524)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~ 308 (524)
+++.|.+. ++.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 266 l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~------ 329 (391)
T 1xti_A 266 LAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE------ 329 (391)
T ss_dssp HHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCS------
T ss_pred HHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCC------
Confidence 99999876 67788899999999999999999999999999999999999999999999987654
Q ss_pred CCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009827 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 309 ~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|..+|+||+||+||. ++|.|+.++++++.
T Consensus 330 ------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 330 ------------DSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp ------------SHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred ------------CHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 788999999999998 78999999987654
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.4e-40 Score=348.42 Aligned_cols=310 Identities=17% Similarity=0.144 Sum_probs=223.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt--~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
.+++|.++++.+.+|+++++++|||+|||. ++|.+. ..+.++++.|+++++.|+++.+.+. |..+....|.
T Consensus 45 ~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~~~ 117 (591)
T 2v1x_A 45 FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL-GISATMLNAS 117 (591)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH-TCCEEECCSS
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 357899999999999999999999999993 555432 2468999999999999999988664 6554333332
Q ss_pred eeeccc--------ccCcccceeecchHHHH------HHHHhCCCCCCCceEEEeCCCcCCCC-hHHHHH--HHHHHHhh
Q 009827 84 AIRFED--------RTSERTLIKYLTDGVLL------REILSNPDLSPYSVIILDEAHERSLN-TDILLG--LVKRLVNL 146 (524)
Q Consensus 84 ~~~~~~--------~~~~~~~I~~~T~g~l~------~~l~~~~~l~~~~~vIiDE~H~r~~~-~~~~~~--~l~~l~~~ 146 (524)
....+. ......+|+|+||+.+. +.+.....+.++++|||||||+.+-+ .++... .+..+...
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~ 197 (591)
T 2v1x_A 118 SSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ 197 (591)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh
Confidence 111110 02356899999999774 22222225678999999999974322 112111 12334444
Q ss_pred cccCcEEEEEeccCChH---HHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhc-CCCCCEEEecCc
Q 009827 147 RASKLKILITSATLDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVR-EPEGDVLIFMTG 222 (524)
Q Consensus 147 ~~~~~~ii~~SAT~~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~iLVF~~~ 222 (524)
.+ +.+++++|||++.. .+..+++......+........+.|............+..+...... .+++++||||++
T Consensus 198 ~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~s 276 (591)
T 2v1x_A 198 FP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFS 276 (591)
T ss_dssp CT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred CC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCc
Confidence 55 88999999999874 45666654333222221111122222111122223344445554433 356799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccc
Q 009827 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (524)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k 302 (524)
+++++.+++.|.+. ++.+..+||+|++++|.++++.|++|..+|||||+++++|||+|+|++||++++|+
T Consensus 277 r~~~e~la~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~ 346 (591)
T 2v1x_A 277 QKDSEQVTVSLQNL----------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSK 346 (591)
T ss_dssp HHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCS
T ss_pred HHHHHHHHHHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCC
Confidence 99999999999876 77899999999999999999999999999999999999999999999999988766
Q ss_pred ceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|.||+|||||. .+|.|+.+|+..+...
T Consensus 347 ------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 347 ------------------SMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp ------------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ------------------CHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 788999999999999 7899999999887654
No 18
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.2e-40 Score=341.73 Aligned_cols=293 Identities=20% Similarity=0.253 Sum_probs=206.9
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeeccc-c
Q 009827 13 IVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED-R 90 (524)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~-~ 90 (524)
..+.+.++++++++||||||||+. +.+++.... ..+.++++++|+++++.|+++++. +..+++...... .
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE 85 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC
Confidence 355678899999999999999954 444443221 235689999999999999998774 223333322211 1
Q ss_pred cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc-
Q 009827 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF- 169 (524)
Q Consensus 91 ~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~~- 169 (524)
..+...+.++|.+.+.+.+...+.+.++++|||||+|++........+++..... . .+.++++||||++.+. ..+.
T Consensus 86 ~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~-~~~~~il~SAT~~~~~-~~~~~ 162 (459)
T 2z83_A 86 HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-L-GEAAAIFMTATPPGTT-DPFPD 162 (459)
T ss_dssp --CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-T-TSCEEEEECSSCTTCC-CSSCC
T ss_pred CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-c-CCccEEEEEcCCCcch-hhhcc
Confidence 2345668889999999999888889999999999999765555556665555443 2 3899999999997542 2222
Q ss_pred CCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeE
Q 009827 170 SNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAV 249 (524)
Q Consensus 170 ~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 249 (524)
.+.|+..+.. ..+. ........ .+ ....+++||||+++++++.+++.|.+. ++.
T Consensus 163 ~~~pi~~~~~-~~~~------~~~~~~~~----~l-----~~~~~~~LVF~~s~~~~~~l~~~L~~~----------g~~ 216 (459)
T 2z83_A 163 SNAPIHDLQD-EIPD------RAWSSGYE----WI-----TEYAGKTVWFVASVKMGNEIAMCLQRA----------GKK 216 (459)
T ss_dssp CSSCEEEEEC-CCCS------SCCSSCCH----HH-----HHCCSCEEEECSCHHHHHHHHHHHHHT----------TCC
T ss_pred CCCCeEEecc-cCCc------chhHHHHH----HH-----HhcCCCEEEEeCChHHHHHHHHHHHhc----------CCc
Confidence 2334332221 1110 00000000 01 113679999999999999999999876 677
Q ss_pred EEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC--CCCccccceeeecHHhHHh
Q 009827 250 ILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP--SSGMYSLDVVQISKVQANQ 327 (524)
Q Consensus 250 v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~--~~~~~~l~~~~~s~~~~~Q 327 (524)
+..+||. +|.++++.|++|.++|||||+++++|||+|+ ++|||+|..+.+.++. ...+..+...|.|.++|+|
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~Q 291 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQ 291 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHH
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHH
Confidence 8889984 7889999999999999999999999999999 9999999888777652 2222222448999999999
Q ss_pred hccccCCCC--CCeEEEecCch
Q 009827 328 RVGRAGRTR--PGKCYRLYPST 347 (524)
Q Consensus 328 R~GRaGR~~--~G~~~~l~~~~ 347 (524)
|+|||||.+ +|.||.+++..
T Consensus 292 R~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 292 RRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHTTSSCCTTCCCEEEEECSCC
T ss_pred hccccCCCCCCCCeEEEEEccc
Confidence 999999994 89999999775
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.4e-39 Score=325.34 Aligned_cols=310 Identities=20% Similarity=0.247 Sum_probs=230.0
Q ss_pred CchHHHHHHHHHhccC-CEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 5 PILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~-~~~ii~apTGsGKTt~l~~~l~~-~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
..+++|.+.+..+.++ +++++.+|||||||......+.. .....+.+++++.|+++++.|+++++.+..+... ..++
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~ 106 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKN-LKIA 106 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC-CCEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-ceEE
Confidence 3577888888888777 79999999999999554443333 3333466899999999999999999988765421 1122
Q ss_pred Eeeeccc-----ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 83 YAIRFED-----RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 83 ~~~~~~~-----~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
....... ....+.+|+++||+.+.+.+.... .+.++++||+||+|+ ..+.++... +..++...+.+.++++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~-~~~~~~~~~~~~~~i~~ 184 (367)
T 1hv8_A 107 KIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE-MLNMGFIKD-VEKILNACNKDKRILLF 184 (367)
T ss_dssp EECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-HHTTTTHHH-HHHHHHTSCSSCEEEEE
T ss_pred EEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-hhhhchHHH-HHHHHHhCCCCceEEEE
Confidence 1111110 111357899999999998886654 588999999999994 333333333 45555555558999999
Q ss_pred eccCChH---HHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 009827 157 SATLDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (524)
Q Consensus 157 SAT~~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L 233 (524)
|||++.+ .+..++++...+..... ..+...+......+... .+.... ...++++||||+++++++.+++.|
T Consensus 185 SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~l~~~l-~~~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 185 SATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNENERFE----ALCRLL-KNKEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp CSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCGGGHHH----HHHHHH-CSTTCCEEEECSSHHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeChHHHHH----HHHHHH-hcCCCcEEEEECCHHHHHHHHHHH
Confidence 9999865 34567765544443322 23444443333333322 222322 256779999999999999999999
Q ss_pred HHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcc
Q 009827 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~ 313 (524)
.+. +..+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 259 ~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~----------- 317 (367)
T 1hv8_A 259 RDI----------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ----------- 317 (367)
T ss_dssp HHT----------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS-----------
T ss_pred Hhc----------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC-----------
Confidence 876 67788999999999999999999999999999999999999999999999987643
Q ss_pred ccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|.||+||+||. ++|.|+.+++++++..
T Consensus 318 -------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 318 -------NPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp -------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred -------CHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 788999999999999 6999999999887765
No 20
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.3e-40 Score=372.69 Aligned_cols=326 Identities=17% Similarity=0.193 Sum_probs=234.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh-CCcccceE
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL-GVRLGEEV 81 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~-~~~~~~~v 81 (524)
.++.+.+|.+++..+.+|++++++||||||||+.....+... ...+.++++++|+++++.|+++++.+.+ +..++...
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~ 115 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLIT 115 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEEC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 356889999999999999999999999999994322222211 1246789999999999999999998765 33444333
Q ss_pred eEeeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
| +.....+.+|+|+|||+|.+.+.... .+.++++|||||+| +..+.++... +..++...+.+.++|++|||+
T Consensus 116 G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~-~e~ii~~l~~~v~iIlLSAT~ 188 (997)
T 4a4z_A 116 G-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVV-WEEVIIMLPQHVKFILLSATV 188 (997)
T ss_dssp S-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCC-HHHHHHHSCTTCEEEEEECCC
T ss_pred C-----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHH-HHHHHHhcccCCCEEEEcCCC
Confidence 3 22334568999999999998886655 68899999999999 4544443222 334444555689999999998
Q ss_pred -ChHHHhhhcC-----CCCeeecCCcccceeEEecCCC--------CcchH-----------------------------
Q 009827 161 -DGEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER--------PTSYL----------------------------- 197 (524)
Q Consensus 161 -~~~~~~~~~~-----~~~~~~i~~~~~~v~~~~~~~~--------~~~~~----------------------------- 197 (524)
+...+.+|++ ...++..+.+..|+..++.... ...+.
T Consensus 189 ~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (997)
T 4a4z_A 189 PNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGG 268 (997)
T ss_dssp TTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------
T ss_pred CChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccc
Confidence 6678999985 2345666777777775542110 00000
Q ss_pred ----------------------------------------------------HHHHHHHHHHHhcCCCCCEEEecCcHHH
Q 009827 198 ----------------------------------------------------ESALKTAIDIHVREPEGDVLIFMTGQDD 225 (524)
Q Consensus 198 ----------------------------------------------------~~~~~~~~~~~~~~~~g~iLVF~~~~~~ 225 (524)
...+..++..+.....+++||||+++++
T Consensus 269 ~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~ 348 (997)
T 4a4z_A 269 STARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKR 348 (997)
T ss_dssp ------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHH
Confidence 0113344455555667899999999999
Q ss_pred HHHHHHHHHHHhh------------------hcCCC-----------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEE
Q 009827 226 IEKLVSKLEDKIR------------------SLDEG-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (524)
Q Consensus 226 ~~~~~~~L~~~~~------------------~~~~~-----------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~v 276 (524)
|+.++..|.+... .+... ......+.++||+|++.+|..+++.|++|.++|
T Consensus 349 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kV 428 (997)
T 4a4z_A 349 CEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKV 428 (997)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcE
Confidence 9999998854200 00000 000224788999999999999999999999999
Q ss_pred EEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCc
Q 009827 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPS 346 (524)
Q Consensus 277 lvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~ 346 (524)
||||+++++|||+|+ ..||..+.++ ||.. ...|+|..+|.||+|||||. ..|.||.++..
T Consensus 429 LvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 429 LFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp EEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred EEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecCC
Confidence 999999999999999 5555556555 4432 23588999999999999997 48999999853
No 21
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.8e-40 Score=340.77 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=214.4
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeeccc-
Q 009827 12 TIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED- 89 (524)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~- 89 (524)
.|...+..+++++++||||||||+ ++.+++..... .+.++++++|+++++.|+++.+. +..+++......
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~ 82 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKS 82 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeeccccc
Confidence 344445566667999999999995 45555433222 35689999999999999988763 334454443332
Q ss_pred ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009827 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 90 ~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (524)
.......+.++|+|.+.+.+...+.+.++++||+||+|+.+...+....++.... .+.+.++++||||++.+....+.
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV--EMGEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH--HTTSCEEEEECSSCTTCCCSSCC
T ss_pred cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhh--cCCCceEEEEccCCCccchhhhc
Confidence 2335677899999999999998889999999999999965333334444333221 22379999999999876555555
Q ss_pred CCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeE
Q 009827 170 SNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAV 249 (524)
Q Consensus 170 ~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 249 (524)
++.+++.+. +..|.. .|.. ..++ . ....+++||||+++++++.+++.|.+. ++.
T Consensus 161 ~~~~~~~~~-~~~p~~-~~~~--~~~~-----------l-~~~~~~~lVF~~s~~~a~~l~~~L~~~----------g~~ 214 (451)
T 2jlq_A 161 SNSPIEDIE-REIPER-SWNT--GFDW-----------I-TDYQGKTVWFVPSIKAGNDIANCLRKS----------GKR 214 (451)
T ss_dssp CSSCEEEEE-CCCCSS-CCSS--SCHH-----------H-HHCCSCEEEECSSHHHHHHHHHHHHTT----------TCC
T ss_pred CCCceEecC-ccCCch-hhHH--HHHH-----------H-HhCCCCEEEEcCCHHHHHHHHHHHHHc----------CCe
Confidence 555555443 222211 1110 0011 1 123679999999999999999999775 667
Q ss_pred EEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccce---eeecHHhHH
Q 009827 250 ILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV---VQISKVQAN 326 (524)
Q Consensus 250 v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~---~~~s~~~~~ 326 (524)
+..+||.+. .++++.|++|+.+|||||+++++|||+|+ ++|||+|+.+...|| ..+...+.. .|.|.++|+
T Consensus 215 ~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 215 VIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp EEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHH
T ss_pred EEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHH
Confidence 888998654 57899999999999999999999999999 999999999999988 555555555 899999999
Q ss_pred hhccccCCCC--CCeEEEecC
Q 009827 327 QRVGRAGRTR--PGKCYRLYP 345 (524)
Q Consensus 327 QR~GRaGR~~--~G~~~~l~~ 345 (524)
||+|||||.+ +|.||.++.
T Consensus 289 Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 289 QRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp HHHTTSSCCTTCCCEEEEECS
T ss_pred HhccccCCCCCCCccEEEEeC
Confidence 9999999994 899998864
No 22
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=329.07 Aligned_cols=312 Identities=18% Similarity=0.170 Sum_probs=220.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc---C----------------CCCCcEEEEcccchhHHHHH
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH---G----------------YTKSGIIGVTQPRRVAAVSV 65 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~---~----------------~~~~~~i~~~~P~r~la~~~ 65 (524)
.+++|.+++..+.++++++++||||||||. ++.+++... . ...+.+++++.|+++++.|+
T Consensus 38 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 117 (417)
T 2i4i_A 38 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQI 117 (417)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHH
Confidence 467899999999999999999999999993 333232211 1 11124789999999999999
Q ss_pred HHHHHHHhC---CcccceEeEeeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHH
Q 009827 66 ARRVAQELG---VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGL 139 (524)
Q Consensus 66 ~~~v~~~~~---~~~~~~vg~~~~~~--~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~ 139 (524)
++++.+... ..+....|...... .....+.+|+++||+.+.+.+.... .+.++++||+||+|. ..+.++ ...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~-~~~~~~-~~~ 195 (417)
T 2i4i_A 118 YEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR-MLDMGF-EPQ 195 (417)
T ss_dssp HHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH-HHHTTC-HHH
T ss_pred HHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH-hhccCc-HHH
Confidence 998876543 22222222110000 1112457899999999999887665 688999999999994 332222 223
Q ss_pred HHHHHhh--cc--cCcEEEEEeccCChH---HHhhhcCCCCeeecCCc---ccceeEEecCCCCcchHHHHHHHHHHHHh
Q 009827 140 VKRLVNL--RA--SKLKILITSATLDGE---KVSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHV 209 (524)
Q Consensus 140 l~~l~~~--~~--~~~~ii~~SAT~~~~---~~~~~~~~~~~~~i~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (524)
+..++.. .+ ...++++||||++.+ .+..++++...+.+... ...+...+......+. ...+..+..
T Consensus 196 ~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~l~~~l~ 271 (417)
T 2i4i_A 196 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK----RSFLLDLLN 271 (417)
T ss_dssp HHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGH----HHHHHHHHH
T ss_pred HHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhH----HHHHHHHHH
Confidence 4555542 11 257899999999764 24455554433333221 1122222222222221 222233333
Q ss_pred c-CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccC
Q 009827 210 R-EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (524)
Q Consensus 210 ~-~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gid 288 (524)
. ..++++||||+++++++.+++.|.+. ++.+..+||+++.++|..+++.|++|..+|||||+++++|+|
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 341 (417)
T 2i4i_A 272 ATGKDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341 (417)
T ss_dssp TCCTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSC
T ss_pred hcCCCCeEEEEECCHHHHHHHHHHHHHC----------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCC
Confidence 2 35678999999999999999999875 678899999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+|++++||+++.|. |..+|+||+||+||. ++|.|+.++++++...
T Consensus 342 ip~v~~Vi~~~~p~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 342 ISNVKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp CCCEEEEEESSCCS------------------SHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred cccCCEEEEEcCCC------------------CHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 99999999987644 788999999999999 7899999999887654
No 23
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=356.31 Aligned_cols=325 Identities=15% Similarity=0.188 Sum_probs=233.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
++.+.+|.+++..+.++++++++||||||||+.....+.... ..+.+++++.|+++++.|+++.+.+.++ .++...|
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltG- 161 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG- 161 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeC-
Confidence 458899999999999999999999999999955433333221 2467999999999999999999988887 4443333
Q ss_pred eeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC-
Q 009827 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD- 161 (524)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~- 161 (524)
+.....+.+|+|+||++|.+.+.... .+.++++|||||+|. ..+.+.. ..+..++...+.+.++|+||||++
T Consensus 162 ----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg-~~~e~il~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 162 ----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERG-VVWEETIILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp ----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTH-HHHHHHHHHSCTTCEEEEEECCCTT
T ss_pred ----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchh-HHHHHHHHhcCCCCeEEEEcCCCCC
Confidence 22334567899999999998886554 789999999999994 4333221 113344444556899999999994
Q ss_pred hHHHhhhcC-----CCCeeecCCcccceeEEecCCC----------Ccch-----H------------------------
Q 009827 162 GEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER----------PTSY-----L------------------------ 197 (524)
Q Consensus 162 ~~~~~~~~~-----~~~~~~i~~~~~~v~~~~~~~~----------~~~~-----~------------------------ 197 (524)
...+++|++ ...++..+.+..|+..++.... ...+ .
T Consensus 236 ~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 315 (1010)
T 2xgj_A 236 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 315 (1010)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccc
Confidence 456888874 2344555666666655443211 0000 0
Q ss_pred ------------HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhh------------------hcCCCC---
Q 009827 198 ------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR------------------SLDEGS--- 244 (524)
Q Consensus 198 ------------~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~------------------~~~~~~--- 244 (524)
...+..++........+++||||+++.+++.+++.|..... .+....
T Consensus 316 ~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 395 (1010)
T 2xgj_A 316 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 395 (1010)
T ss_dssp -------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTC
T ss_pred cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcc
Confidence 11122233333344556999999999999999998865200 000000
Q ss_pred --------CCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccc
Q 009827 245 --------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (524)
Q Consensus 245 --------~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~ 316 (524)
.....+..|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...||...
T Consensus 396 ~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------ 465 (1010)
T 2xgj_A 396 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------ 465 (1010)
T ss_dssp HHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------
T ss_pred hhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------
Confidence 001237889999999999999999999999999999999999999999999973 22344321
Q ss_pred eeeecHHhHHhhccccCCCC---CCeEEEecCch
Q 009827 317 VVQISKVQANQRVGRAGRTR---PGKCYRLYPST 347 (524)
Q Consensus 317 ~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~ 347 (524)
..|+|..+|.||+|||||.+ .|.||.++++.
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 35789999999999999995 59999999764
No 24
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.7e-39 Score=341.61 Aligned_cols=298 Identities=17% Similarity=0.236 Sum_probs=219.7
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~v 81 (524)
++|++++ + +..+.++++++++||||||||+. +.+++..... .+.+++++.|+++++.|+++.+. +..+
T Consensus 172 ~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~~v 240 (618)
T 2whx_A 172 GEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GLPI 240 (618)
T ss_dssp CCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCE
T ss_pred CCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CCce
Confidence 5888876 3 88899999999999999999943 4444433222 35689999999999999987764 2345
Q ss_pred eEeeec-ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 82 GYAIRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 82 g~~~~~-~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+|.... +........+.++|.+.+.+.+...+.+.++++||+||||+.....+.....+...+. + .+.++++||||+
T Consensus 241 ~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~-~~~q~il~SAT~ 318 (618)
T 2whx_A 241 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-M-GEAAAIFMTATP 318 (618)
T ss_dssp EECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-H-TSCEEEEECSSC
T ss_pred eEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-c-cCccEEEEECCC
Confidence 554433 2233456778889999999999888899999999999999653323333333333331 1 379999999999
Q ss_pred ChHHHhhhcC-CCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh
Q 009827 161 DGEKVSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (524)
Q Consensus 161 ~~~~~~~~~~-~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~ 239 (524)
+.. ...+.. +.+.+.+... +........ + .... +..+++||||+|+++++.+++.|.+.
T Consensus 319 ~~~-~~~~~~~~~~~~~v~~~-------~~~~~~~~l----l----~~l~-~~~~~~LVF~~s~~~a~~l~~~L~~~--- 378 (618)
T 2whx_A 319 PGS-TDPFPQSNSPIEDIERE-------IPERSWNTG----F----DWIT-DYQGKTVWFVPSIKAGNDIANCLRKS--- 378 (618)
T ss_dssp TTC-CCSSCCCSSCEEEEECC-------CCSSCCSSS----C----HHHH-HCCSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred chh-hhhhhccCCceeeeccc-------CCHHHHHHH----H----HHHH-hCCCCEEEEECChhHHHHHHHHHHHc---
Confidence 755 333333 2333333221 111110111 1 1111 23679999999999999999999886
Q ss_pred cCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee--cCCCCccccce
Q 009827 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY--NPSSGMYSLDV 317 (524)
Q Consensus 240 ~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~--~~~~~~~~l~~ 317 (524)
+..+..+||. +|.++++.|++|+.+|||||+++++|||+| +++|||+|+.+.+++ +...++.....
T Consensus 379 -------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d 446 (618)
T 2whx_A 379 -------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGP 446 (618)
T ss_dssp -------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEE
T ss_pred -------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEccc
Confidence 6778889984 788899999999999999999999999998 999999999887765 34445556677
Q ss_pred eeecHHhHHhhccccCCCC--CCeEEEecC
Q 009827 318 VQISKVQANQRVGRAGRTR--PGKCYRLYP 345 (524)
Q Consensus 318 ~~~s~~~~~QR~GRaGR~~--~G~~~~l~~ 345 (524)
.|.|.++|+||+|||||.+ +|.||.+++
T Consensus 447 ~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 447 IPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 8999999999999999993 899999997
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-39 Score=333.02 Aligned_cols=314 Identities=18% Similarity=0.241 Sum_probs=115.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhC---Ccccc
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGE 79 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~v~~~~~---~~~~~ 79 (524)
..+.+|.+++..+.+++++++.+|||||||.. +..++... ....+.+++++.|+++++.|+++.+.+... ..+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 122 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 122 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 45788999999999999999999999999944 33333322 222456899999999999999998866543 22222
Q ss_pred eEeEeeeccc-ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 80 EVGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 80 ~vg~~~~~~~-~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
..|.....+. ....+.+|+++||+.+.+.+.... .+.++++||+||+|+ ..+.++. ..+..+....+.+.++++||
T Consensus 123 ~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~-~~~~~~~~~~~~~~~~i~~S 200 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFK-EQIYQIFTLLPPTTQVVLLS 200 (394)
T ss_dssp ECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCH-HHHHHHHHHSCTTCEEEEEC
T ss_pred EeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcH-HHHHHHHHhCCCCceEEEEE
Confidence 2221111000 011257899999999998886554 678999999999994 2222222 23445555555589999999
Q ss_pred ccCChH---HHhhhcCCCCeeecCCcccc---eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 009827 158 ATLDGE---KVSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (524)
Q Consensus 158 AT~~~~---~~~~~~~~~~~~~i~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~ 231 (524)
||++.. ....++.+...+.+...... +...+......++. ...+..+......+++||||+++++++.+++
T Consensus 201 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 277 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEELTT 277 (394)
T ss_dssp SSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHHHH
Confidence 999764 34556655444443332211 11112111111111 1222223333456799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCC
Q 009827 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (524)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~ 311 (524)
.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|
T Consensus 278 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p---------- 337 (394)
T 1fuu_A 278 KLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP---------- 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHc----------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCC----------
Confidence 99875 6778889999999999999999999999999999999999999999999997754
Q ss_pred ccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 312 ~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
.|..+|+||+||+||. ++|.|+.++++++...
T Consensus 338 --------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 338 --------ANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -----------------------------------------
T ss_pred --------CCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 3677899999999999 7899999998887654
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-39 Score=340.02 Aligned_cols=316 Identities=17% Similarity=0.209 Sum_probs=202.2
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHHH-HHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCc-ccce
Q 009827 6 ILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQ-ILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEE 80 (524)
Q Consensus 6 i~~~~~~i~~~i~~~--~~~ii~apTGsGKTt~l~~-~l~~~~~-~~~~~i~~~~P~r~la~~~~~~v~~~~~~~-~~~~ 80 (524)
.+.+|.+++..+.++ ++++++||||||||..... ++..... ..+.+++++.|+++++.|+++++.+..+.. ....
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 355677788888877 9999999999999954333 3333222 234589999999999999999987765422 2222
Q ss_pred EeEeeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
.++..........+.+|+++|++.+.+.+.... .+.++++||+||+|+...+.++. ..+..+....+.+.++|+||||
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~-~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG-DQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CH-HHHHHHHHHSCTTCEEEEEESC
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcH-HHHHHHHHhCCcCCeEEEEeCC
Confidence 222222222233468999999999998886655 68899999999999533323332 3345555556568999999999
Q ss_pred CChH--HH-hhhcCCCCeeecCCccccee---EEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 009827 160 LDGE--KV-SKFFSNCPTLNVPGKLYPVE---ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (524)
Q Consensus 160 ~~~~--~~-~~~~~~~~~~~i~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L 233 (524)
++.. .+ ..++++...+.+........ ..+...... ......+..+......+++||||+++++++.+++.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 301 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp CSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 9753 33 34444444444443322211 111111111 223334444555556789999999999999999998
Q ss_pred HHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcc
Q 009827 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~ 313 (524)
.+. +..+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.|....
T Consensus 378 ~~~----------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~-------- 439 (508)
T 3fho_A 378 TAD----------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQA-------- 439 (508)
T ss_dssp TTT----------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC----------
T ss_pred HhC----------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCccc--------
Confidence 764 66788899999999999999999999999999999999999999999999988764221
Q ss_pred ccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009827 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
.+.|..+|+||+|||||. .+|.|+.+++..
T Consensus 440 ----~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 440 ----GRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp -------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ----CCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 124778999999999998 689999999754
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6e-38 Score=335.53 Aligned_cols=319 Identities=18% Similarity=0.190 Sum_probs=218.3
Q ss_pred chHHHHHHHHHhc--cCCEEEEEcCCCCcHHH-HHHHHHHhc---C--CCCCcEEEEcccchhHHHHHHHHHHHHhC---
Q 009827 6 ILQYEETIVETVE--QNPVVVVIGETGSGKST-QLSQILHRH---G--YTKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (524)
Q Consensus 6 i~~~~~~i~~~i~--~~~~~ii~apTGsGKTt-~l~~~l~~~---~--~~~~~~i~~~~P~r~la~~~~~~v~~~~~--- 74 (524)
.+++|.+++..+. .+++++++||||||||. ++.+++... . ...+.+++++.|+++++.|+++.+.+..+
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 5788999998888 67899999999999993 222222221 1 11234899999999999999998876532
Q ss_pred -CcccceEeEeeeccc-------ccCcccceeecchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCChHH---HHHHHH
Q 009827 75 -VRLGEEVGYAIRFED-------RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDI---LLGLVK 141 (524)
Q Consensus 75 -~~~~~~vg~~~~~~~-------~~~~~~~I~~~T~g~l~~~l~~~--~~l~~~~~vIiDE~H~r~~~~~~---~~~~l~ 141 (524)
......... ..... ......+|+|+||+.+...+... ..+.++++||+||||+ ..+.++ +..++.
T Consensus 175 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 175 GLKKYACVSL-VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDDLETISG 252 (563)
T ss_dssp GGTTSCEEEE-CTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHHHHHHHH
T ss_pred ccCceeEEEE-ECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH-HhccchHHHHHHHHH
Confidence 111111111 11111 01235789999999999887553 2688999999999994 333332 222222
Q ss_pred HHHhh---cccCcEEEEEeccCChH--HHh-hhcCCCCeeecCC-------cccceeEEec-CCCCcchHHHHHHHHHHH
Q 009827 142 RLVNL---RASKLKILITSATLDGE--KVS-KFFSNCPTLNVPG-------KLYPVEILHS-KERPTSYLESALKTAIDI 207 (524)
Q Consensus 142 ~l~~~---~~~~~~ii~~SAT~~~~--~~~-~~~~~~~~~~i~~-------~~~~v~~~~~-~~~~~~~~~~~~~~~~~~ 207 (524)
.+... ...+.++++||||++.. .+. .++.....+.+.. ....+...+. ...........+..+...
T Consensus 253 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (563)
T 3i5x_A 253 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 332 (563)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHH
Confidence 22221 12378999999999753 333 3333333322211 0111111111 111122223333333333
Q ss_pred Hh-cCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccc
Q 009827 208 HV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (524)
Q Consensus 208 ~~-~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~g 286 (524)
.. ..+.+++||||+++.+++.+++.|.+... .++.+..+||+|++++|..+++.|++|..+|||||+++++|
T Consensus 333 ~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 405 (563)
T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 405 (563)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcC
Confidence 32 35677999999999999999999988742 26778899999999999999999999999999999999999
Q ss_pred cCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
||+|+|++||+++.|. |..+|+||+|||||. .+|.|+.++++.+...
T Consensus 406 iDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 406 MDFPNVHEVLQIGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp CCCTTCCEEEEESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHHH
T ss_pred CCcccCCEEEEECCCC------------------chhhhhhhcCccccCCCCceEEEEEchhHHHH
Confidence 9999999999988755 667999999999999 6899999998776543
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-37 Score=334.14 Aligned_cols=318 Identities=18% Similarity=0.180 Sum_probs=218.5
Q ss_pred chHHHHHHHHHhc--cCCEEEEEcCCCCcHHH--HHHHHHHhc--C--CCCCcEEEEcccchhHHHHHHHHHHHHhC---
Q 009827 6 ILQYEETIVETVE--QNPVVVVIGETGSGKST--QLSQILHRH--G--YTKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (524)
Q Consensus 6 i~~~~~~i~~~i~--~~~~~ii~apTGsGKTt--~l~~~l~~~--~--~~~~~~i~~~~P~r~la~~~~~~v~~~~~--- 74 (524)
.+++|.+++..+. .+++++++||||||||. ++|.+.... . ...+.+++++.|+++++.|+++.+.+...
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 5788999998888 78899999999999993 333322211 1 12245889999999999999998876542
Q ss_pred -CcccceEeEeeeccc-------ccCcccceeecchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCChHHH---HHHHH
Q 009827 75 -VRLGEEVGYAIRFED-------RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDIL---LGLVK 141 (524)
Q Consensus 75 -~~~~~~vg~~~~~~~-------~~~~~~~I~~~T~g~l~~~l~~~--~~l~~~~~vIiDE~H~r~~~~~~~---~~~l~ 141 (524)
......... ..... ......+|+|+||+.+...+... ..+.++++||+||||+ ..+.++. ..++.
T Consensus 124 ~~~~~~~~~~-~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 124 GLKKYACVSL-VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDDLETISG 201 (579)
T ss_dssp GGTTSCEEEE-CTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHHHHHHHH
T ss_pred cccceEEEEE-ECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH-hhcCCCHHHHHHHHH
Confidence 221111111 11111 01235789999999999887543 3688999999999995 3333332 22222
Q ss_pred HHHhh---cccCcEEEEEeccCChH--H-HhhhcCCCCeeecCC-------cccceeEEecC-CCCcchHHHHHHHHHHH
Q 009827 142 RLVNL---RASKLKILITSATLDGE--K-VSKFFSNCPTLNVPG-------KLYPVEILHSK-ERPTSYLESALKTAIDI 207 (524)
Q Consensus 142 ~l~~~---~~~~~~ii~~SAT~~~~--~-~~~~~~~~~~~~i~~-------~~~~v~~~~~~-~~~~~~~~~~~~~~~~~ 207 (524)
.+... .+.+.++++||||++.. . +..++.....+.+.. ....+...+.. ..........+..+...
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 281 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHH
Confidence 22211 12367999999999763 2 334444333332211 01111111111 11122223333333333
Q ss_pred Hh-cCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccc
Q 009827 208 HV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (524)
Q Consensus 208 ~~-~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~g 286 (524)
.. ..+.+++||||+++.+++.+++.|.+... .++.+..+||+|++++|.++++.|++|..+|||||+++++|
T Consensus 282 ~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 354 (579)
T 3sqw_A 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 354 (579)
T ss_dssp HHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcC
Confidence 32 25567999999999999999999988742 26778899999999999999999999999999999999999
Q ss_pred cCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009827 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
||+|+|++||+++.|. |..+|+||+|||||. ++|.|+.++++.+..
T Consensus 355 iDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 355 MDFPNVHEVLQIGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp CCCTTCCEEEEESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CCcccCCEEEEcCCCC------------------CHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 9999999999988765 667999999999999 689999999877653
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3e-38 Score=332.68 Aligned_cols=304 Identities=18% Similarity=0.194 Sum_probs=218.9
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEe
Q 009827 7 LQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 7 ~~~~~~i~~~i~~~~~~ii~apTGsGKTt--~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~ 84 (524)
+++|.++++.+.+|+++++++|||+|||. ++|.+.. .+.++++.|+++++.++.+++.+ +|.......|..
T Consensus 27 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~~ 99 (523)
T 1oyw_A 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNSTQ 99 (523)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 67899999999999999999999999993 5554432 35789999999999999998854 454433222211
Q ss_pred eecc------cccCcccceeecchHHHHHHHH-hCCCCCCCceEEEeCCCcCCCCh-HH--HHHHHHHHHhhcccCcEEE
Q 009827 85 IRFE------DRTSERTLIKYLTDGVLLREIL-SNPDLSPYSVIILDEAHERSLNT-DI--LLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 85 ~~~~------~~~~~~~~I~~~T~g~l~~~l~-~~~~l~~~~~vIiDE~H~r~~~~-~~--~~~~l~~l~~~~~~~~~ii 154 (524)
...+ .......+|+++||+.+..... ......++++|||||+|+.+-+. ++ ....+..+....+ +.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i 178 (523)
T 1oyw_A 100 TREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFM 178 (523)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEE
Confidence 1000 0112357899999998853211 11134789999999999744221 12 1222445555555 78999
Q ss_pred EEeccCChH---HHhhhcC-CCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009827 155 ITSATLDGE---KVSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 155 ~~SAT~~~~---~~~~~~~-~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
++|||++.. .+.++++ ..+.+.+.+...+ .+.|......+.. ..+.......+++++||||+|+++++.++
T Consensus 179 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~----~~l~~~l~~~~~~~~IVf~~sr~~~e~l~ 253 (523)
T 1oyw_A 179 ALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (523)
T ss_dssp EEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHH----HHHHHHHHHTTTCCEEEECSSHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHH----HHHHHHHHhcCCCcEEEEeCCHHHHHHHH
Confidence 999999775 3555554 2344433332222 1222111112222 22333333446679999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCC
Q 009827 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~ 310 (524)
+.|.+. ++.+..+||+|++++|..+++.|++|..+|||||+++++|||+|+|++||+++.|+
T Consensus 254 ~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~-------- 315 (523)
T 1oyw_A 254 ARLQSK----------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR-------- 315 (523)
T ss_dssp HHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCS--------
T ss_pred HHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCC--------
Confidence 999886 67899999999999999999999999999999999999999999999999988765
Q ss_pred CccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 311 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|.++|.||+|||||. .+|.|+.+|+.++...
T Consensus 316 ----------s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~ 347 (523)
T 1oyw_A 316 ----------NIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (523)
T ss_dssp ----------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ----------CHHHHHHHhccccCCCCCceEEEEeCHHHHHH
Confidence 788999999999999 6899999999887643
No 30
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.8e-38 Score=335.80 Aligned_cols=315 Identities=17% Similarity=0.164 Sum_probs=221.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccce
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I 97 (524)
.++++++++||||||||+.+...+.... ..++++|+|++|.|+++++.+ .|..++..+|.............++
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~~-----~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~i 226 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSAK-----SGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQASH 226 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHSS-----SEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCSE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC-----CeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccce
Confidence 4788999999999999986666655432 227779999999999999855 5766666665433322122234678
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh-HHHhhhcCCCCeee
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG-EKVSKFFSNCPTLN 176 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~-~~~~~~~~~~~~~~ 176 (524)
+++|++.+ .....++++||||+|+ ..+.++...+...+......+.+++++|||.+. ..+....+....+.
T Consensus 227 l~~T~e~~-------~l~~~v~lvVIDEaH~-l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~ 298 (677)
T 3rc3_A 227 VSCTVEMC-------SVTTPYEVAVIDEIQM-IRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVR 298 (677)
T ss_dssp EEEEGGGC-------CSSSCEEEEEECSGGG-GGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEE
T ss_pred eEecHhHh-------hhcccCCEEEEeccee-cCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEE
Confidence 88887543 2567889999999995 455555555444444444357899999999642 23333333322222
Q ss_pred cCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCC
Q 009827 177 VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (524)
Q Consensus 177 i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~ 256 (524)
...+..+.... .... .. ..... +..+|||+++++++.+++.|.+. ++.+.++||+
T Consensus 299 ~~~r~~~l~~~--~~~l-~~-----------l~~~~-~g~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG~ 353 (677)
T 3rc3_A 299 DYKRLTPISVL--DHAL-ES-----------LDNLR-PGDCIVCFSKNDIYSVSRQIEIR----------GLESAVIYGS 353 (677)
T ss_dssp ECCCSSCEEEC--SSCC-CS-----------GGGCC-TTEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTT
T ss_pred EeeecchHHHH--HHHH-HH-----------HHhcC-CCCEEEEcCHHHHHHHHHHHHhc----------CCCeeeeecc
Confidence 22222222221 1110 00 01122 34478899999999999999875 6778899999
Q ss_pred CCHHHHhcccCCCCC--CceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCC
Q 009827 257 LPPEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (524)
Q Consensus 257 l~~~~r~~v~~~f~~--g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR 334 (524)
|++++|.++++.|++ |.++|||||+++++|||+ ++++||++|++|. .||+..+. ...|+|.++|+||+|||||
T Consensus 354 L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 354 LPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp SCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTC
T ss_pred CCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCC
Confidence 999999999999998 899999999999999999 8999999999987 78876433 2468999999999999999
Q ss_pred CC----CCeEEEecCch--hhhhhCcCCCCCcccccCchhHHHHHHhcC
Q 009827 335 TR----PGKCYRLYPST--VYHDEFLDVTVPEIQRSSLAGSVLYLKSLD 377 (524)
Q Consensus 335 ~~----~G~~~~l~~~~--~~~~~~~~~~~pei~~~~l~~~~l~~~~~~ 377 (524)
.+ +|.||++++++ .+.. +.....|+|.+.++....++++.++
T Consensus 429 ~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 429 FSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp TTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred CCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHh
Confidence 95 58999999877 5555 7788899999988888888887765
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-37 Score=309.27 Aligned_cols=296 Identities=21% Similarity=0.242 Sum_probs=216.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEe
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~ 84 (524)
+.+++|.++++.+.+++++++.+|||||||......+... +.+++++.|+++++.|+++++.+... ..+..++..
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~-~~~~~~~~~ 90 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGR-YMDTKVAEV 90 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTT-TSCCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhh-hcCCcEEEE
Confidence 4678999999999999999999999999995444444432 45789999999999999999875432 122222211
Q ss_pred eeccc-----ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009827 85 IRFED-----RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 85 ~~~~~-----~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SA 158 (524)
..... ....+.+|+++||+.+.+.+.... .+.++++||+||+|. ..+.++ ...+..++...+...++++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~-~~~~~~~~~~~~~~~~~~~~SA 168 (337)
T 2z0m_A 91 YGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL-MFEMGF-IDDIKIILAQTSNRKITGLFSA 168 (337)
T ss_dssp CTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH-HHHTTC-HHHHHHHHHHCTTCSEEEEEES
T ss_pred ECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH-hhcccc-HHHHHHHHhhCCcccEEEEEeC
Confidence 11110 011347899999999998876554 578899999999994 222222 2234555556665788999999
Q ss_pred cCChH---HHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 009827 159 TLDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (524)
Q Consensus 159 T~~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~ 235 (524)
|++.. .+..++.+...+........+...+...... +. . .........++++||||+++++++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDD-WR-S----KVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSS-SH-H----HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChH-HH-H----HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 99765 4667776655444333333333333322211 11 1 1233344667899999999999998887664
Q ss_pred HhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcccc
Q 009827 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l 315 (524)
.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 242 -------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------------- 295 (337)
T 2z0m_A 242 -------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ------------- 295 (337)
T ss_dssp -------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS-------------
T ss_pred -------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC-------------
Confidence 256799999999999999999999999999999999999999999999987644
Q ss_pred ceeeecHHhHHhhccccCCC-CCCeEEEecC
Q 009827 316 DVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (524)
Q Consensus 316 ~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 345 (524)
|..+|+||+||+||. ++|.|+.++.
T Consensus 296 -----s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 296 -----DLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp -----SHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred -----CHHHhhHhcCccccCCCCceEEEEEe
Confidence 778999999999999 7899999987
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.7e-38 Score=345.66 Aligned_cols=345 Identities=16% Similarity=0.176 Sum_probs=193.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc----CCCCCcEEEEcccchhHHHHHHHHHHHHh---CCc
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH----GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~----~~~~~~~i~~~~P~r~la~~~~~~v~~~~---~~~ 76 (524)
...+.+|.++++.+..|+++++++|||||||......+... ....+++++++.|++.++.|+.+.+.+.. +..
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 91 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYR 91 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCce
Confidence 34688999999999999999999999999995444433321 11223689999999999999999887765 444
Q ss_pred ccceEeEeeeccc--ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh-----c
Q 009827 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-----R 147 (524)
Q Consensus 77 ~~~~vg~~~~~~~--~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~-----~ 147 (524)
++...|....... ....+.+|+|+|||.|.+.+.... .+.++++||+||||+..-+.. ...++...+.. .
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~~~~ 170 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLGGSS 170 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhcccC
Confidence 4443331110000 011358999999999999987664 488899999999996443333 33323333222 1
Q ss_pred ccCcEEEEEeccCC-------hHH---HhhhcC--CCCeeecCCcc---------cceeEEe------------------
Q 009827 148 ASKLKILITSATLD-------GEK---VSKFFS--NCPTLNVPGKL---------YPVEILH------------------ 188 (524)
Q Consensus 148 ~~~~~ii~~SAT~~-------~~~---~~~~~~--~~~~~~i~~~~---------~~v~~~~------------------ 188 (524)
+...++++||||+. .+. +..++. +...+...... .|.....
T Consensus 171 ~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~ 250 (696)
T 2ykg_A 171 GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 250 (696)
T ss_dssp SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHH
Confidence 24789999999996 221 111110 01111000000 0000000
Q ss_pred ----------cC--------------------------------------------------------------------
Q 009827 189 ----------SK-------------------------------------------------------------------- 190 (524)
Q Consensus 189 ----------~~-------------------------------------------------------------------- 190 (524)
..
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence 00
Q ss_pred ----------------CCCcch-------------------------HHHHHHHHHHHHh----cCCCCCEEEecCcHHH
Q 009827 191 ----------------ERPTSY-------------------------LESALKTAIDIHV----REPEGDVLIFMTGQDD 225 (524)
Q Consensus 191 ----------------~~~~~~-------------------------~~~~~~~~~~~~~----~~~~g~iLVF~~~~~~ 225 (524)
....+. .......+..+.. ..+++++||||+++.+
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 000000 0001112222221 2356799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEe--------cCCCCHHHHhcccCCCCC-CceEEEEecCccccccCCCCeeEEE
Q 009827 226 IEKLVSKLEDKIRSLDEGSCMDAVILPL--------HGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVI 296 (524)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~gidip~v~~VI 296 (524)
++.+++.|.+... ...+.+..+ ||+|+.++|.++++.|++ |.++|||||+++++|||+|++++||
T Consensus 411 ~~~l~~~L~~~~~------~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI 484 (696)
T 2ykg_A 411 VDALKNWIEGNPK------LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484 (696)
T ss_dssp HHHHHHHHHHCTT------CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEE
T ss_pred HHHHHHHHHhCCC------ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEE
Confidence 9999999987510 012455555 679999999999999998 9999999999999999999999999
Q ss_pred eCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh---------hCcCCCCCcccccCch
Q 009827 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD---------EFLDVTVPEIQRSSLA 367 (524)
Q Consensus 297 d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~---------~~~~~~~pei~~~~l~ 367 (524)
+++.|. |..+|+||+|| ||.++|.||.|+++.+... .+.....|++.+.+..
T Consensus 485 ~~d~p~------------------s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 545 (696)
T 2ykg_A 485 LYEYVG------------------NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 545 (696)
T ss_dssp EESCC--------------------CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred EeCCCC------------------CHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 988754 45578899999 9999999999999887722 1444455666666665
Q ss_pred hHHHHHH
Q 009827 368 GSVLYLK 374 (524)
Q Consensus 368 ~~~l~~~ 374 (524)
.+...++
T Consensus 546 ~~~~~i~ 552 (696)
T 2ykg_A 546 VFREKIL 552 (696)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5e-37 Score=316.68 Aligned_cols=288 Identities=21% Similarity=0.247 Sum_probs=196.0
Q ss_pred HhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeecc-cccCc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DRTSE 93 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~-~~~~~ 93 (524)
.+.+|++++++||||||||.. +++++.... ..+.+++++.|+++++.|+++.+. +. .+++..... ....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-RRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccCC
Confidence 467899999999999999943 344443221 235688999999999999998774 22 233332221 12233
Q ss_pred ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcC-CC
Q 009827 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NC 172 (524)
Q Consensus 94 ~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~ 172 (524)
..-+.+++.+.+...+.....+.++++||+||+|+.....+...+++..+.. +.+.++++||||+++.. ..+.. ..
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~--~~~~~~l~~SAT~~~~~-~~~~~~~~ 152 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR--ANESATILMTATPPGTS-DEFPHSNG 152 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCC-CSSCCCSS
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc--cCCceEEEEeCCCCchh-hhhhhcCC
Confidence 4445566777777777777789999999999999642223334444555443 23799999999997542 22221 11
Q ss_pred CeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEE
Q 009827 173 PTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILP 252 (524)
Q Consensus 173 ~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~ 252 (524)
++..+. ..+........+. .+. +.++++|||||++++++.+++.|.+. ++.+..
T Consensus 153 ~~~~~~-------~~~~~~~~~~~~~----~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v~~ 206 (440)
T 1yks_A 153 EIEDVQ-------TDIPSEPWNTGHD----WIL-----ADKRPTAWFLPSIRAANVMAASLRKA----------GKSVVV 206 (440)
T ss_dssp CEEEEE-------CCCCSSCCSSSCH----HHH-----HCCSCEEEECSCHHHHHHHHHHHHHT----------TCCEEE
T ss_pred CeeEee-------eccChHHHHHHHH----HHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc----------CCCEEE
Confidence 221111 1111111111111 111 23679999999999999999999876 677889
Q ss_pred ecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee-cCCCCccccceeeecHHhHHhhccc
Q 009827 253 LHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY-NPSSGMYSLDVVQISKVQANQRVGR 331 (524)
Q Consensus 253 lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~-~~~~~~~~l~~~~~s~~~~~QR~GR 331 (524)
+|| ++|.++++.|++|+.+|||||+++|+|||+| +++|||+|..+.+.| ++..++......|.+.++|+||+||
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR 281 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 281 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccc
Confidence 999 5789999999999999999999999999999 999999999988877 3444555566779999999999999
Q ss_pred cCCC--CCCeEEEecC
Q 009827 332 AGRT--RPGKCYRLYP 345 (524)
Q Consensus 332 aGR~--~~G~~~~l~~ 345 (524)
+||. .+|.||.+++
T Consensus 282 ~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 282 IGRNPNRDGDSYYYSE 297 (440)
T ss_dssp SSCCTTCCCEEEEECS
T ss_pred cCCCCCCCceEEEEec
Confidence 9996 5899999984
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.2e-37 Score=325.85 Aligned_cols=331 Identities=16% Similarity=0.184 Sum_probs=173.1
Q ss_pred CCCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcCC---CCCcEEEEcccchhHHHHHHHHHHHHh---
Q 009827 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (524)
Q Consensus 1 ~~~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~-~~l~~~~~---~~~~~i~~~~P~r~la~~~~~~v~~~~--- 73 (524)
|..+..+++|.+++..+..++++++.+|||||||.... +++..... ..+.+++++.|++.++.|+++.+.+.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 45678899999999999999999999999999993322 22222211 126689999999999999999887664
Q ss_pred CCcccceEeEeeeccc--ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc--
Q 009827 74 GVRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-- 147 (524)
Q Consensus 74 ~~~~~~~vg~~~~~~~--~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~-- 147 (524)
+..++...|....... ....+.+|+++||+.+.+.+.... .+.++++||+||||. ..+......++...+...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGG-CSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcc-cCCcchHHHHHHHHHHhhhc
Confidence 4555444442211111 112357899999999999887654 588999999999995 443334444444443331
Q ss_pred --ccCcEEEEEeccCChH---HHh----------hhcCCCCeeecCCc--------cccee--EEecCCCCcc-------
Q 009827 148 --ASKLKILITSATLDGE---KVS----------KFFSNCPTLNVPGK--------LYPVE--ILHSKERPTS------- 195 (524)
Q Consensus 148 --~~~~~ii~~SAT~~~~---~~~----------~~~~~~~~~~i~~~--------~~~v~--~~~~~~~~~~------- 195 (524)
....++++||||+... .+. ..++...+...... ..|.. ..+.......
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 2368999999999321 111 22221111111100 00000 0000000000
Q ss_pred ---------------------------------hH---------------------------------------------
Q 009827 196 ---------------------------------YL--------------------------------------------- 197 (524)
Q Consensus 196 ---------------------------------~~--------------------------------------------- 197 (524)
++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred -------------------------------------------------HHHHHHHHHHH----hcCCCCCEEEecCcHH
Q 009827 198 -------------------------------------------------ESALKTAIDIH----VREPEGDVLIFMTGQD 224 (524)
Q Consensus 198 -------------------------------------------------~~~~~~~~~~~----~~~~~g~iLVF~~~~~ 224 (524)
...+..+..+. ...+++++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 00111111111 1256789999999999
Q ss_pred HHHHHHHHHHHHh--hhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCC-CceEEEEecCccccccCCCCeeEEEeCCcc
Q 009827 225 DIEKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (524)
Q Consensus 225 ~~~~~~~~L~~~~--~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~gidip~v~~VId~g~~ 301 (524)
.++.+++.|.+.. .........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 9999999997641 0111111124455668999999999999999999 999999999999999999999999997764
Q ss_pred cceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009827 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 302 k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
. |..+|+||+|| ||.++|.||.|+++.+.+.
T Consensus 482 ~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 482 G------------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp S------------------CHHHHHHC---------CCEEEEESCHHHHH
T ss_pred C------------------CHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 4 77899999999 9999999999999887754
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.6e-36 Score=312.26 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=200.2
Q ss_pred cCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeec-ccccCcccc
Q 009827 19 QNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERTL 96 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~-~~~~~~~~~ 96 (524)
+|++++++||||||||.. +++++.... ..+.+++++.|+++++.|+++.+. +. .+++..+. .....++..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt~~La~Q~~~~~~---~~----~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASEMYEALR---GE----PIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcHHHHHHHHHHHhC---CC----eEEEEecCccccCCCCce
Confidence 478999999999999943 344442221 235689999999999999887663 33 33433322 223334567
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcC-CCCee
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NCPTL 175 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~~ 175 (524)
+.++|.+.+.+.+.....+.++++|||||+|+.+...+.....++.+.. +.+.++++||||+++. +..+.. ..++.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~--~~~~~~l~~SAT~~~~-~~~~~~~~~~i~ 149 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS--MGDAGAIFMTATPPGT-TEAFPPSNSPII 149 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH--TTSCEEEEEESSCTTC-CCSSCCCSSCCE
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh--CCCCcEEEEeCCCCcc-hhhhcCCCCcee
Confidence 7888999998888887789999999999999643333344444555442 2379999999999754 222221 22222
Q ss_pred ecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecC
Q 009827 176 NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (524)
Q Consensus 176 ~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~ 255 (524)
.+... +........ +... ...++++|||||++++++.+++.|.+. +..+..+||
T Consensus 150 ~~~~~-------~~~~~~~~~--------~~~l-~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg 203 (431)
T 2v6i_A 150 DEETR-------IPDKAWNSG--------YEWI-TEFDGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYLNR 203 (431)
T ss_dssp EEECC-------CCSSCCSSC--------CHHH-HSCSSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEEST
T ss_pred ecccc-------CCHHHHHHH--------HHHH-HcCCCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEeCC
Confidence 22111 111111111 1111 123679999999999999999999876 667888999
Q ss_pred CCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC
Q 009827 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 256 ~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 335 (524)
+ +|.++++.|++|+.+|||||+++|+|||+| +.+|||+|..+.+.|| ..++......|.+.++|+||+||+||.
T Consensus 204 ~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 204 K----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCC
Confidence 7 577899999999999999999999999999 9999999999999998 566666777899999999999999998
Q ss_pred C-CCeEEEec
Q 009827 336 R-PGKCYRLY 344 (524)
Q Consensus 336 ~-~G~~~~l~ 344 (524)
+ .+.|+.+|
T Consensus 278 g~~~~~~~~~ 287 (431)
T 2v6i_A 278 PEKLGDIYAY 287 (431)
T ss_dssp TTCCCCEEEE
T ss_pred CCCCCeEEEE
Confidence 4 33444444
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.4e-37 Score=315.61 Aligned_cols=299 Identities=12% Similarity=0.092 Sum_probs=204.7
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
+..+++|.+++..+.++++++++||||||||. .++.++... ..+.+++++.|+++++.|+++++.+... .+..++
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~ 95 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIF 95 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEE
Confidence 35678999999999999999999999999994 333333322 3467899999999999999999977533 233333
Q ss_pred Eeeecccc----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCC---------CC-hHHHHHHHHH
Q 009827 83 YAIRFEDR----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERS---------LN-TDILLGLVKR 142 (524)
Q Consensus 83 ~~~~~~~~----------~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~---------~~-~~~~~~~l~~ 142 (524)
........ ...+.+|+++||+.+.+.+.. ..+.++++||+||+|+.. ++ .++....+..
T Consensus 96 ~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~ 174 (414)
T 3oiy_A 96 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 174 (414)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHH
Confidence 22111111 112389999999999876653 456799999999999421 11 1222222444
Q ss_pred HHhhcc-----------cCcEEEEEeccCChHH-----HhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHH
Q 009827 143 LVNLRA-----------SKLKILITSATLDGEK-----VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAID 206 (524)
Q Consensus 143 l~~~~~-----------~~~~ii~~SAT~~~~~-----~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 206 (524)
++...+ .+.+++++|||+.++. +..+++ ..+.........+...+......+.+ ..
T Consensus 175 i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l-------~~ 246 (414)
T 3oiy_A 175 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL-------VE 246 (414)
T ss_dssp HHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHH-------HH
T ss_pred HHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHH-------HH
Confidence 444432 4789999999953321 223332 11111111122333333333222222 11
Q ss_pred HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEE-EecCCCCHHHHhcccCCCCCCceEEEEe----cC
Q 009827 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TN 281 (524)
Q Consensus 207 ~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~f~~g~~~vlva----T~ 281 (524)
+... .++++||||+++++++.+++.|.+. ++.+. .+||. +|+ ++.|++|..+|||| |+
T Consensus 247 ~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 247 LLEI-FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp HHHH-HCSSEEEEESSHHHHHHHHHHHHHT----------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred HHHH-cCCCEEEEECCHHHHHHHHHHHHHc----------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 1111 2479999999999999999999886 66777 88984 444 99999999999999 99
Q ss_pred ccccccCCCC-eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC-----CCeEEEecCchh
Q 009827 282 IAETSLTVDG-VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLYPSTV 348 (524)
Q Consensus 282 i~e~gidip~-v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~-----~G~~~~l~~~~~ 348 (524)
++++|+|+|+ |++||++|.|+. .|..+|+||+|||||.+ +|.|+.++.+..
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHH
T ss_pred hhhccCccccccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEccHH
Confidence 9999999999 999999887631 37889999999999973 799999994433
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.5e-36 Score=322.30 Aligned_cols=329 Identities=16% Similarity=0.207 Sum_probs=195.8
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhcCC---CCCcEEEEcccchhHHHHHHHHHHHHh---C
Q 009827 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l-~~~l~~~~~---~~~~~i~~~~P~r~la~~~~~~v~~~~---~ 74 (524)
+++..+++|.+++..+.+++++++.+|||||||... .+++..... ..+.+++++.|+++++.|+++.+.+.+ +
T Consensus 1 s~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 1 SPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 357788999999999999999999999999999332 222222211 126689999999999999999887664 4
Q ss_pred CcccceEeEeeeccc--ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc---
Q 009827 75 VRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--- 147 (524)
Q Consensus 75 ~~~~~~vg~~~~~~~--~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~--- 147 (524)
..++...|....... ....+.+|+++||+.+.+.+.... .+.++++||+||||. ..+......++...+...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN-TSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG-CSTTCHHHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc-cCCcchHHHHHHHHHHhhhcc
Confidence 444444442111110 111357999999999999887654 578899999999995 333333444444444332
Q ss_pred --ccCcEEEEEeccCChH----------H---HhhhcCCCCeeecCCc---------ccceeE--EecCCCCcc------
Q 009827 148 --ASKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK---------LYPVEI--LHSKERPTS------ 195 (524)
Q Consensus 148 --~~~~~ii~~SAT~~~~----------~---~~~~~~~~~~~~i~~~---------~~~v~~--~~~~~~~~~------ 195 (524)
..+.++++||||+... . +...++ ...+..... ..|... .+.......
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 1367999999999431 1 122222 111111110 000000 000000000
Q ss_pred -----------------------------------hH-------------------------------------------
Q 009827 196 -----------------------------------YL------------------------------------------- 197 (524)
Q Consensus 196 -----------------------------------~~------------------------------------------- 197 (524)
+.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred ---------------------------------------------------HHHHHHHH----HHHhcCCCCCEEEecCc
Q 009827 198 ---------------------------------------------------ESALKTAI----DIHVREPEGDVLIFMTG 222 (524)
Q Consensus 198 ---------------------------------------------------~~~~~~~~----~~~~~~~~g~iLVF~~~ 222 (524)
......+. ......+.+++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00011111 11122456899999999
Q ss_pred HHHHHHHHHHHHHHhhh--cCCCCCCCeEEEEecCCCCHHHHhcccCCCCC-CceEEEEecCccccccCCCCeeEEEeCC
Q 009827 223 QDDIEKLVSKLEDKIRS--LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCG 299 (524)
Q Consensus 223 ~~~~~~~~~~L~~~~~~--~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~gidip~v~~VId~g 299 (524)
+..++.+++.|...... .......+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||+++
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 99999999999875210 00001124455667889999999999999999 9999999999999999999999999987
Q ss_pred cccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009827 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 300 ~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
.|. |..+|+||+|| ||..+|.||.|+++.+.+.
T Consensus 479 ~p~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 479 YVG------------------NVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp CCS------------------SCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred CCC------------------CHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 655 44477899999 9999999999998887654
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7e-36 Score=313.02 Aligned_cols=317 Identities=17% Similarity=0.201 Sum_probs=218.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCC---cccce
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEE 80 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~---~~~~~ 80 (524)
++.+++|.+++..+.++ ++++.+|||+|||.++..++.......+.+++++.|++.++.|+++.+.+.++. .++..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 57889999999999988 899999999999965555544332234568999999999999999999888765 33333
Q ss_pred EeEeeeccc-ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009827 81 VGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 81 vg~~~~~~~-~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SA 158 (524)
.|.....+. ....+.+|+++|++.+.+.+.... .+.++++||+||||. ..+......+.+.+....+ ..++++|||
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~-~~~~l~lTa 164 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAK-NPLVIGLTA 164 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCS-SCCEEEEES
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCC-CCeEEEEec
Confidence 331111000 011357899999999998886554 688999999999994 4433333333444444343 789999999
Q ss_pred cCC--hHHHhh---hcCCCCeeecCC-c------ccceeEEec--CCCC-------------------------------
Q 009827 159 TLD--GEKVSK---FFSNCPTLNVPG-K------LYPVEILHS--KERP------------------------------- 193 (524)
Q Consensus 159 T~~--~~~~~~---~~~~~~~~~i~~-~------~~~v~~~~~--~~~~------------------------------- 193 (524)
|+. .+.+.+ +++......... . ..+....+. ..+.
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 995 233333 222111110000 0 000000000 0000
Q ss_pred -----------------------------------------------------cchHH----------------------
Q 009827 194 -----------------------------------------------------TSYLE---------------------- 198 (524)
Q Consensus 194 -----------------------------------------------------~~~~~---------------------- 198 (524)
..++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence 00000
Q ss_pred ------------------HHHHHHHHHHhc----CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecC-
Q 009827 199 ------------------SALKTAIDIHVR----EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG- 255 (524)
Q Consensus 199 ------------------~~~~~~~~~~~~----~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~- 255 (524)
..+..+.++... .+++++||||++++.++.+++.|.+. ++.+..+||
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~ 394 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEecc
Confidence 011111222222 56789999999999999999999886 677888999
Q ss_pred -------CCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhh
Q 009827 256 -------SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQR 328 (524)
Q Consensus 256 -------~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR 328 (524)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.+ .+...+.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~------------------~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV------------------PSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC------------------HHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCC------------------CCHHHHHHH
Confidence 9999999999999999999999999999999999999999987754 377789999
Q ss_pred ccccCCCCCCeEEEecCchhhhh
Q 009827 329 VGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 329 ~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
+||+||.++|.+|+|+++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999998877655
No 39
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5e-36 Score=321.82 Aligned_cols=286 Identities=20% Similarity=0.255 Sum_probs=205.8
Q ss_pred ccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeec-ccccCccc
Q 009827 18 EQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERT 95 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~-~~~~~~~~ 95 (524)
.++++++++||||||||+. +++++.... ..+.+++++.|+++++.|+++.+.. .. +++.... .....+..
T Consensus 239 ~~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lilaPTr~La~Q~~~~l~~---~~----i~~~~~~l~~v~tp~~ 310 (673)
T 2wv9_A 239 KKRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAPTRVVAAEMAEALRG---LP----VRYLTPAVQREHSGNE 310 (673)
T ss_dssp STTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTTT---SC----CEECCC---CCCCSCC
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEccHHHHHHHHHHHHhc---CC----eeeecccccccCCHHH
Confidence 3899999999999999943 444443322 2356889999999999999887742 11 2332221 11233445
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcC-CCCe
Q 009827 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NCPT 174 (524)
Q Consensus 96 ~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~~ 174 (524)
.+.+++.+.+.+.+.....+.++++|||||+|+.....+.....+..+... .+.++++||||++.. +..+.. ..++
T Consensus 311 ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~--~~~~vl~~SAT~~~~-i~~~~~~~~~i 387 (673)
T 2wv9_A 311 IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA--GEAAAIFMTATPPGT-SDPFPDTNSPV 387 (673)
T ss_dssp CEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT--TSCEEEEECSSCTTC-CCSSCCCSSCE
T ss_pred HHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc--cCCcEEEEcCCCChh-hhhhcccCCce
Confidence 667788888888888877899999999999996533334455555555432 378999999999754 222221 2233
Q ss_pred eecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEec
Q 009827 175 LNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (524)
Q Consensus 175 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh 254 (524)
..+... +........+ .. . ....+++||||+++++++.+++.|.+. ++.+..+|
T Consensus 388 ~~v~~~-------~~~~~~~~~l----~~----l-~~~~~~~lVF~~s~~~~e~la~~L~~~----------g~~v~~lH 441 (673)
T 2wv9_A 388 HDVSSE-------IPDRAWSSGF----EW----I-TDYAGKTVWFVASVKMSNEIAQCLQRA----------GKRVIQLN 441 (673)
T ss_dssp EEEECC-------CCSSCCSSCC----HH----H-HSCCSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEEC
T ss_pred EEEeee-------cCHHHHHHHH----HH----H-HhCCCCEEEEECCHHHHHHHHHHHHhC----------CCeEEEeC
Confidence 222211 1111111111 11 1 135789999999999999999999875 67788999
Q ss_pred CCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccce--eecCCCCccccceeeecHHhHHhhcccc
Q 009827 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR--QYNPSSGMYSLDVVQISKVQANQRVGRA 332 (524)
Q Consensus 255 ~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~--~~~~~~~~~~l~~~~~s~~~~~QR~GRa 332 (524)
| ++|.++++.|++|+++|||||+++++|||+| +++|||+|....+ .||...++..+...|.|.++|+||+||+
T Consensus 442 g----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRa 516 (673)
T 2wv9_A 442 R----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRV 516 (673)
T ss_dssp S----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTS
T ss_pred h----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhcc
Confidence 9 4788999999999999999999999999999 9999999977654 3566656666667899999999999999
Q ss_pred CCC--CCCeEEEecC
Q 009827 333 GRT--RPGKCYRLYP 345 (524)
Q Consensus 333 GR~--~~G~~~~l~~ 345 (524)
||. ++|.||.++.
T Consensus 517 GR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 517 GRNPSQIGDEYHYGG 531 (673)
T ss_dssp SCCSSCCCEEEEECS
T ss_pred CCCCCCCCEEEEEEe
Confidence 998 6899999974
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.7e-35 Score=322.72 Aligned_cols=328 Identities=16% Similarity=0.173 Sum_probs=179.3
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcCC---CCCcEEEEcccchhHHHHHHHHHHHHh---CCc
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~-~~l~~~~~---~~~~~i~~~~P~r~la~~~~~~v~~~~---~~~ 76 (524)
...+.+|.+++..+..++++++++|||||||.... .++..... ..+++++++.|++.++.|+.+.+.+.+ +..
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 34678999999999999999999999999993322 22222211 126689999999999999999887665 555
Q ss_pred ccceEeEeeeccc--ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc----c
Q 009827 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (524)
Q Consensus 77 ~~~~vg~~~~~~~--~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~----~ 148 (524)
++...|....... ....+.+|+|+||+.+.+.+.... .+.++++|||||||. .........++..+.... .
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG-CSTTSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 5554443211111 112467999999999999887554 578899999999995 433333444444444331 3
Q ss_pred cCcEEEEEeccCCh----------HH---HhhhcCCCCeeecCC----------cccceeEEecCCCCcc----------
Q 009827 149 SKLKILITSATLDG----------EK---VSKFFSNCPTLNVPG----------KLYPVEILHSKERPTS---------- 195 (524)
Q Consensus 149 ~~~~ii~~SAT~~~----------~~---~~~~~~~~~~~~i~~----------~~~~v~~~~~~~~~~~---------- 195 (524)
...++++||||+.. +. +...++...+..... +.......+.......
T Consensus 406 ~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (797)
T 4a2q_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485 (797)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHH
Confidence 36899999999942 11 112222111111000 0000000000000000
Q ss_pred ------------------------------hH------------------------------------------------
Q 009827 196 ------------------------------YL------------------------------------------------ 197 (524)
Q Consensus 196 ------------------------------~~------------------------------------------------ 197 (524)
++
T Consensus 486 ~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 565 (797)
T 4a2q_A 486 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 565 (797)
T ss_dssp HHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 00
Q ss_pred ----------------------------------------------HHHHHHHHHHH----hcCCCCCEEEecCcHHHHH
Q 009827 198 ----------------------------------------------ESALKTAIDIH----VREPEGDVLIFMTGQDDIE 227 (524)
Q Consensus 198 ----------------------------------------------~~~~~~~~~~~----~~~~~g~iLVF~~~~~~~~ 227 (524)
...+..+..+. ...+++++||||+++..++
T Consensus 566 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~ 645 (797)
T 4a2q_A 566 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 645 (797)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHH
Confidence 00111111111 2255689999999999999
Q ss_pred HHHHHHHHHhh--hcCCCCCCCeEEEEecCCCCHHHHhcccCCCCC-CceEEEEecCccccccCCCCeeEEEeCCcccce
Q 009827 228 KLVSKLEDKIR--SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (524)
Q Consensus 228 ~~~~~L~~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~ 304 (524)
.+++.|.+... ........+.....+||+|+.++|..+++.|++ |..+|||||+++++|||+|++++||+++.|.
T Consensus 646 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~-- 723 (797)
T 4a2q_A 646 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG-- 723 (797)
T ss_dssp HHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS--
T ss_pred HHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC--
Confidence 99999976410 011001124456678999999999999999999 9999999999999999999999999977644
Q ss_pred eecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009827 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 305 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|| ||.++|.||.|+++.+.+.
T Consensus 724 ----------------s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 724 ----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp ----------------CHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred ----------------CHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 77899999999 9999999999998877654
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=329.27 Aligned_cols=318 Identities=18% Similarity=0.201 Sum_probs=198.7
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-----CCCCCcEEEEcccchhHHHHH-HHHHHHHhC-
Q 009827 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-----GYTKSGIIGVTQPRRVAAVSV-ARRVAQELG- 74 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~-----~~~~~~~i~~~~P~r~la~~~-~~~v~~~~~- 74 (524)
+.++.+.+|.++++.+.+|+++++.+|||||||......+... ....+++++++.|+++++.|+ ++.+.+.++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 3578899999999999999999999999999994333333221 112236789999999999999 999988776
Q ss_pred -CcccceEeEeeecc--cccCcccceeecchHHHHHHHHhC-------CCCCCCceEEEeCCCcCCCChHH----HHHHH
Q 009827 75 -VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDI----LLGLV 140 (524)
Q Consensus 75 -~~~~~~vg~~~~~~--~~~~~~~~I~~~T~g~l~~~l~~~-------~~l~~~~~vIiDE~H~r~~~~~~----~~~~l 140 (524)
..++...|...... .......+|+|+||+.|.+.+... ..+.++++|||||||. ...... ...++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHYL 162 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHHH
Confidence 44444444322111 111246899999999999877322 2678899999999994 333222 22222
Q ss_pred HHHHhhcc---------cCcEEEEEeccCChH----------H---HhhhcCCCCeeecCCc--------ccceeEE-ec
Q 009827 141 KRLVNLRA---------SKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK--------LYPVEIL-HS 189 (524)
Q Consensus 141 ~~l~~~~~---------~~~~ii~~SAT~~~~----------~---~~~~~~~~~~~~i~~~--------~~~v~~~-~~ 189 (524)
........ ...++++||||+... . +...++...+...... ..|.... ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22211111 378999999999641 1 2222322111111100 0111000 00
Q ss_pred CC-CC-----------------------cc--------------------------------------------------
Q 009827 190 KE-RP-----------------------TS-------------------------------------------------- 195 (524)
Q Consensus 190 ~~-~~-----------------------~~-------------------------------------------------- 195 (524)
.. .. .+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00
Q ss_pred ----------------------------------hHHH-------------------------HHHHHHHHHhcCC-CCC
Q 009827 196 ----------------------------------YLES-------------------------ALKTAIDIHVREP-EGD 215 (524)
Q Consensus 196 ----------------------------------~~~~-------------------------~~~~~~~~~~~~~-~g~ 215 (524)
++.. ....+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000 0001111112223 689
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCC--------CCHHHHhcccCCCCCCceEEEEecCcccccc
Q 009827 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS--------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSL 287 (524)
Q Consensus 216 iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gi 287 (524)
+||||++++.++.+++.|.+. ..+ ...++.+..+||+ |+.++|.++++.|++|..+|||||+++++||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~-~~l---~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITEN-EKF---AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSS-CSC---C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred EEEEECcHHHHHHHHHHHHhC-ccc---cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 999999999999999999864 111 1126788899999 9999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEec
Q 009827 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY 344 (524)
Q Consensus 288 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~ 344 (524)
|+|++++||++++|. |..+|+||+|||||.+ .++.++
T Consensus 479 Dip~v~~VI~~d~p~------------------s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 479 DIKECNIVIRYGLVT------------------NEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCCSCCCCEEESCCC------------------CHHHHHHHHTTSCSSS--CEEEEE
T ss_pred ccccCCEEEEeCCCC------------------CHHHHHHHcCCCCCCC--ceEEEE
Confidence 999999999977654 7789999999987754 444444
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-33 Score=316.98 Aligned_cols=327 Identities=17% Similarity=0.199 Sum_probs=180.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCC---CcEEEEcccchhHHHHHHHHHHHHh---CCc
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~-~~~~---~~~i~~~~P~r~la~~~~~~v~~~~---~~~ 76 (524)
...+.+|.+++..+.+|+++++.+|||||||......+... .... +++++++.|++.++.|+++.+.+.+ +..
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 45678999999999999999999999999994433333332 2212 6689999999999999999887664 555
Q ss_pred ccceEeEeeeccc--ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc----c
Q 009827 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (524)
Q Consensus 77 ~~~~vg~~~~~~~--~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~----~ 148 (524)
+....|....... ....+.+|+|+||+.|.+.+.... .+.++++||+||||. .........++..+.... .
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG-CSTTCHHHHHHHHHHHHHHTTCS
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 5544442211111 112457999999999999887654 477899999999995 433333444444444331 3
Q ss_pred cCcEEEEEeccCCh----------HH---HhhhcCCCCeeecCCc---------cccee--EEecCCC------------
Q 009827 149 SKLKILITSATLDG----------EK---VSKFFSNCPTLNVPGK---------LYPVE--ILHSKER------------ 192 (524)
Q Consensus 149 ~~~~ii~~SAT~~~----------~~---~~~~~~~~~~~~i~~~---------~~~v~--~~~~~~~------------ 192 (524)
...++++||||+.. +. +...++. ..+..... ..|.. ..+....
T Consensus 406 ~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~-~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCC-ceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 36899999999942 11 1112211 11110000 00000 0000000
Q ss_pred -------------------------C---------------------c--------------------------------
Q 009827 193 -------------------------P---------------------T-------------------------------- 194 (524)
Q Consensus 193 -------------------------~---------------------~-------------------------------- 194 (524)
. .
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 0 0
Q ss_pred ----chHH----------------------------------------HHHHHHHHHHh----cCCCCCEEEecCcHHHH
Q 009827 195 ----SYLE----------------------------------------SALKTAIDIHV----REPEGDVLIFMTGQDDI 226 (524)
Q Consensus 195 ----~~~~----------------------------------------~~~~~~~~~~~----~~~~g~iLVF~~~~~~~ 226 (524)
.++. ..+..+..+.. ..+++++||||++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 0000 00111111221 24568999999999999
Q ss_pred HHHHHHHHHHh--hhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCC-CceEEEEecCccccccCCCCeeEEEeCCcccc
Q 009827 227 EKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (524)
Q Consensus 227 ~~~~~~L~~~~--~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~gidip~v~~VId~g~~k~ 303 (524)
+.+++.|.+.. .........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.|.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~- 723 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG- 723 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCS-
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC-
Confidence 99999998751 0111111124456668999999999999999999 9999999999999999999999999977644
Q ss_pred eeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009827 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 304 ~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|| ||.++|.||.|+++.+.+.
T Consensus 724 -----------------s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 724 -----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (936)
T ss_dssp -----------------CSHHHHCC--------CCCEEEEESCHHHHH
T ss_pred -----------------CHHHHHHhcCC-CCCCCCEEEEEEeCCCHHH
Confidence 67799999999 9999999999998877654
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-35 Score=317.92 Aligned_cols=300 Identities=15% Similarity=0.187 Sum_probs=201.7
Q ss_pred CCchHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC---
Q 009827 4 LPILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~------~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~--- 74 (524)
+..+.+|+++++.+.++ .+++++||||||||......+.... ..+.+++++.|+++++.|+++++.+.+.
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l-~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 34678888888877654 5889999999999944433333221 1356899999999999999999987763
Q ss_pred CcccceEeEeeecc------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009827 75 VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~~~vg~~~~~~------~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~ 148 (524)
..++...|.....+ .......+|+++|++.+. ....+.++++||+||+|..+... +..+....
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~----~~~~~~~l~lVVIDEaHr~g~~q-------r~~l~~~~ 514 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ----EDVHFKNLGLVIIDEQHRFGVKQ-------REALMNKG 514 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH----HCCCCSCCCEEEEESCCCC------------CCCCSSS
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----hhhhccCCceEEecccchhhHHH-------HHHHHHhC
Confidence 44443333211111 011235899999998764 35578999999999999532211 11111122
Q ss_pred cCcEEEEEeccCChHHHh-hhcCCCCeeec---CCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 009827 149 SKLKILITSATLDGEKVS-KFFSNCPTLNV---PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (524)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~-~~~~~~~~~~i---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~ 224 (524)
.+.++++||||+.++.+. .+++...+..+ +....++...+..... .......+... ...+++++||||+.+
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~~--l~~g~qvlVf~~~ie 589 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQE--VMRGGQAFIVYPLIE 589 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSST---HHHHHHHHHHH--TTTSCCBCCBCCCC-
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccch---HHHHHHHHHHH--HhcCCcEEEEecchh
Confidence 368999999999766554 44454333322 2233455554443222 22223322222 245679999999775
Q ss_pred H--------HHHHHHHHHH-HhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEE
Q 009827 225 D--------IEKLVSKLED-KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 225 ~--------~~~~~~~L~~-~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~V 295 (524)
+ ++.+++.|.+ . .++..+..+||+|++++|..+++.|++|+.+|||||+++++|||+|++++|
T Consensus 590 ~se~l~~~~a~~l~~~L~~~~--------~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~V 661 (780)
T 1gm5_A 590 ESDKLNVKSAVEMYEYLSKEV--------FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVM 661 (780)
T ss_dssp -------CHHHHHHHSGGGSC--------C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEE
T ss_pred hhhhhhHHHHHHHHHHHHhhh--------cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEE
Confidence 5 4444444433 2 135678889999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecC
Q 009827 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 345 (524)
|+++.++ .+.+++.||+||+||. .+|.||.+++
T Consensus 662 Ii~d~~r-----------------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 662 VIENPER-----------------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp EBCSCSS-----------------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEeCCCC-----------------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 9866543 2456788999999997 7899999997
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.8e-33 Score=317.53 Aligned_cols=269 Identities=12% Similarity=0.132 Sum_probs=184.8
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
+..+++|.+++..+.+|++++++||||||||.. ++.++... ..+.+++++.|+++++.|+++++.+ ++ ..+..++
T Consensus 77 f~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~ 152 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIF 152 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEE
Confidence 346788999999999999999999999999953 33333332 3467899999999999999999977 43 3333344
Q ss_pred Eeeecccc----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCh---HHHH-------HHHHH
Q 009827 83 YAIRFEDR----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT---DILL-------GLVKR 142 (524)
Q Consensus 83 ~~~~~~~~----------~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~---~~~~-------~~l~~ 142 (524)
...+.... .....+|+|+|||.|.+.+.. ..+.++++||+||+|+..-.. |.++ ..+..
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 32222211 112489999999999877653 456789999999999522111 2222 22455
Q ss_pred HHhhcc-----------cCcEEEEEeccCChH-----HHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHH
Q 009827 143 LVNLRA-----------SKLKILITSATLDGE-----KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAID 206 (524)
Q Consensus 143 l~~~~~-----------~~~~ii~~SAT~~~~-----~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 206 (524)
++...+ .+.+++++|||+.++ .+..++. ..+.........+...+........+ ..++.
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k~~~L----~~ll~ 306 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL----VELLE 306 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCCHHHH----HHHHH
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCHHHHH----HHHHH
Confidence 555443 588999999995332 2333332 11111111222333334333222222 11121
Q ss_pred HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEE-EecCCCCHHHHhcccCCCCCCceEEEEe----cC
Q 009827 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TN 281 (524)
Q Consensus 207 ~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~f~~g~~~vlva----T~ 281 (524)
. .++++||||++++.++.++..|... ++.+. .+|| +|++ ++.|++|..+|||| |+
T Consensus 307 ~----~~~~~LVF~~s~~~a~~l~~~L~~~----------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 307 I----FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp H----HCSSEEEEESSSHHHHHHHHHHHHT----------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred h----cCCCEEEEECcHHHHHHHHHHHHhC----------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 1 2489999999999999999999876 67777 8998 2555 99999999999999 99
Q ss_pred ccccccCCCC-eeEEEeCCccc
Q 009827 282 IAETSLTVDG-VVYVIDCGYVK 302 (524)
Q Consensus 282 i~e~gidip~-v~~VId~g~~k 302 (524)
++++|||+|+ |++||++|+|+
T Consensus 367 vlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCE
T ss_pred eeEecCcCCCCCCEEEEECCCC
Confidence 9999999999 99999999998
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.7e-32 Score=307.14 Aligned_cols=299 Identities=18% Similarity=0.188 Sum_probs=209.5
Q ss_pred chHHHHHHHHHhcc----CC--EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009827 6 ILQYEETIVETVEQ----NP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 6 i~~~~~~i~~~i~~----~~--~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~ 79 (524)
.+.+|.+.++.+.. ++ +++++||||||||..+...+.... ..+.++++++|+++++.|+++++.+.++. .+.
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La~Q~~~~~~~~~~~-~~i 681 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPV 681 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTT-TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHHHHHHHHHHHHhhc-CCC
Confidence 37788888887765 55 899999999999954433332221 23568999999999999999999876642 122
Q ss_pred eEeEeeecccc----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009827 80 EVGYAIRFEDR----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 80 ~vg~~~~~~~~----------~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~ 149 (524)
.++...++... .....+|+++|++.+ .....+.++++|||||+|. +.... +..+...+.
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH~--~g~~~-----~~~l~~l~~ 750 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEHR--FGVRH-----KERIKAMRA 750 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGGG--SCHHH-----HHHHHHHHT
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechHh--cChHH-----HHHHHHhcC
Confidence 23322221111 123589999999755 3445788999999999995 22221 222222334
Q ss_pred CcEEEEEeccCChHHHhhhcCCCCeee-c---CCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHH
Q 009827 150 KLKILITSATLDGEKVSKFFSNCPTLN-V---PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (524)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~~~~~~~-i---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~ 225 (524)
+.++++||||+.+..+...+.+..-.. + +....++..+....... .....+.... ..+++++|||+++++
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~----~i~~~il~~l--~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM----VVREAILREI--LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHH----HHHHHHHHHH--TTTCEEEEECCCSSC
T ss_pred CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHH----HHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 789999999997766554443322211 1 12234444444332221 1122222222 346899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccccee
Q 009827 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (524)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~ 305 (524)
++.+++.|.+.. ++..+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|++++||..+..
T Consensus 825 ~~~l~~~L~~~~--------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~---- 892 (1151)
T 2eyq_A 825 IQKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD---- 892 (1151)
T ss_dssp HHHHHHHHHHHC--------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT----
T ss_pred HHHHHHHHHHhC--------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC----
Confidence 999999998873 46778899999999999999999999999999999999999999999999964321
Q ss_pred ecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009827 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 306 ~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
+.+.+++.||+||+||. .+|.||.++++..
T Consensus 893 -------------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 893 -------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp -------------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred -------------CCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 12556899999999998 6899999997653
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=1.4e-32 Score=287.56 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=202.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCc-ccceEe
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~-~~~~vg 82 (524)
++.+++|.+.++.+.+++++++++|||+|||.+...++... +..+++++|++.++.|+++++.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~g 166 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBSS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEECC
Confidence 56899999999999999999999999999995554444443 45789999999999999999877 6554 333222
Q ss_pred EeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh
Q 009827 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (524)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~ 162 (524)
......+|+++|++.+...+.. ...++++||+||+|. ..+..+ +.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~-~~~~l~lSATp~~ 230 (472)
T 2fwr_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSI-APFRLGLTATFER 230 (472)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCC-CSEEEEEESCCCC
T ss_pred -------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcC-CCeEEEEecCccC
Confidence 2233578999999988766532 235699999999994 444332 23444444 6789999999952
Q ss_pred H-----HHhhhcCCC----CeeecCCc-ccc-----eeEE--------------------------------ecC-----
Q 009827 163 E-----KVSKFFSNC----PTLNVPGK-LYP-----VEIL--------------------------------HSK----- 190 (524)
Q Consensus 163 ~-----~~~~~~~~~----~~~~i~~~-~~~-----v~~~--------------------------------~~~----- 190 (524)
. .+..+++.. ....+... ..+ +.+. +..
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 310 (472)
T 2fwr_A 231 EDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310 (472)
T ss_dssp TTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTT
T ss_pred CCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHh
Confidence 1 233444320 00000000 000 0000 000
Q ss_pred --CC--Ccch------------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEec
Q 009827 191 --ER--PTSY------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (524)
Q Consensus 191 --~~--~~~~------------~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh 254 (524)
.. .... .......+..+.....++++||||++++.++.+++.|. +..+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---------------~~~~~ 375 (472)
T 2fwr_A 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---------------IPAIT 375 (472)
T ss_dssp CCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---------------CCBCC
T ss_pred ccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---------------cceee
Confidence 00 0000 00122333344444567899999999999999888762 23489
Q ss_pred CCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCC
Q 009827 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (524)
Q Consensus 255 ~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR 334 (524)
|+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.+ .|..++.||+||+||
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~------------------~s~~~~~Q~~GR~~R 437 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS------------------GSAREYIQRLGRILR 437 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCS------------------SCCHHHHHHHHHSBC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCC------------------CCHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999986543 367799999999999
Q ss_pred CCCC----eEEEecCchhhhh
Q 009827 335 TRPG----KCYRLYPSTVYHD 351 (524)
Q Consensus 335 ~~~G----~~~~l~~~~~~~~ 351 (524)
.++| .+|.++++...+.
T Consensus 438 ~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 438 PSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CCTTTCCEEEEEEEECSCC--
T ss_pred CCCCCceEEEEEEEeCCCchH
Confidence 9766 5666776655544
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=2.6e-32 Score=308.25 Aligned_cols=264 Identities=14% Similarity=0.133 Sum_probs=171.5
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC---C----cccc
Q 009827 8 QYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V----RLGE 79 (524)
Q Consensus 8 ~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~---~----~~~~ 79 (524)
.+|.+++..+.+|++++++||||||||+ +++.+.... ..+.+++++.|+++++.|+++.+.+... . .++.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEE
Confidence 8899999999999999999999999995 333333222 2466899999999999999998876553 3 3333
Q ss_pred eEeEeeecc-----cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCC-hHHHHHHHHHHH-------hh
Q 009827 80 EVGYAIRFE-----DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-TDILLGLVKRLV-------NL 146 (524)
Q Consensus 80 ~vg~~~~~~-----~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~-~~~~~~~l~~l~-------~~ 146 (524)
.+|...... ..... .+|+++|||.|.+.+.. +.++++||+||+|+ .++ ...+..++..+- ..
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~~~~~~~i~~~lgf~~~~~~~~ 211 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKASKNVDKLLHLLGFHYDLKTKS 211 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH-HHTSTHHHHHHHHHTTEEEETTTTE
T ss_pred EeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhh-hhhccccHHHHHHHhCcchhhhhhh
Confidence 333221111 11122 89999999999886654 77999999999995 333 222222222210 01
Q ss_pred cccCcEEEEEeccCChH-H-HhhhcCCCCeeecCCcc---cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecC
Q 009827 147 RASKLKILITSATLDGE-K-VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (524)
Q Consensus 147 ~~~~~~ii~~SAT~~~~-~-~~~~~~~~~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~ 221 (524)
.+.+.+++++|||++.. . ...++.+...+.+.... ..+...+......+.+. .+.. ..++++||||+
T Consensus 212 ~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~-------~ll~-~~~~~~LVF~~ 283 (1054)
T 1gku_B 212 WVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLS-------SILE-KLGTGGIIYAR 283 (1054)
T ss_dssp EEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTH-------HHHT-TSCSCEEEEES
T ss_pred cccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHH-------HHHh-hcCCCEEEEEc
Confidence 12367899999998653 1 11222221112222211 22333343322222222 2222 22578999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEe----cCccccccCCCCe-eEEE
Q 009827 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIAETSLTVDGV-VYVI 296 (524)
Q Consensus 222 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlva----T~i~e~gidip~v-~~VI 296 (524)
++++++.+++.|.+. +.+..+||++. .+++.|++|..+|||| |+++++|||+|+| ++||
T Consensus 284 t~~~a~~l~~~L~~~-----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 284 TGEEAEEIYESLKNK-----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp SHHHHHHHHHTTTTS-----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred CHHHHHHHHHHHhhc-----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 999999999888542 45788999983 6677899999999999 9999999999995 9999
Q ss_pred eCCccc
Q 009827 297 DCGYVK 302 (524)
Q Consensus 297 d~g~~k 302 (524)
++|.|+
T Consensus 348 ~~~~P~ 353 (1054)
T 1gku_B 348 FVGCPS 353 (1054)
T ss_dssp EESCCE
T ss_pred EeCCCc
Confidence 999993
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=2.1e-32 Score=288.96 Aligned_cols=302 Identities=14% Similarity=0.089 Sum_probs=198.3
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEe
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~ 84 (524)
..+.+|.+.++.+.++++++++||||||||.....++.......+++++++.|+++++.|+++++.+. +......++..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~~v~~~ 191 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKKI 191 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT-TSSCGGGEEEC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh-hcCCccceEEE
Confidence 56889999999998899999999999999955443333322123459999999999999999999544 32222222211
Q ss_pred eecccc---cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 85 IRFEDR---TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 85 ~~~~~~---~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.+.... .....+|+++|++.+.+. ....+.++++||+||+|. ... . .+..++...+...++++||||++
T Consensus 192 ~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~-~~~-~----~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-H----HHHHHGGGCTTCCEEEEEESCGG
T ss_pred ecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC-CCc-c----cHHHHHHhcccCcEEEEEEeCCC
Confidence 111111 125689999999976432 113577899999999994 332 2 24445555544789999999995
Q ss_pred hHH-----HhhhcCCCCeeecCC-------cccceeEE--ecCCCC--------cchHH------------HHHHHHHHH
Q 009827 162 GEK-----VSKFFSNCPTLNVPG-------KLYPVEIL--HSKERP--------TSYLE------------SALKTAIDI 207 (524)
Q Consensus 162 ~~~-----~~~~~~~~~~~~i~~-------~~~~v~~~--~~~~~~--------~~~~~------------~~~~~~~~~ 207 (524)
... +..+++. .+..++. ...+.... ....+. ..+.. ..+...+..
T Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 264 DGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 431 2234432 2222211 11111111 000000 11111 111111222
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec-Cccccc
Q 009827 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETS 286 (524)
Q Consensus 208 ~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT-~i~e~g 286 (524)
........++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|++|..+||||| +++++|
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 22233446677776 88888888888775 3368889999999999999999999999999999 999999
Q ss_pred cCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCe-EEEecC
Q 009827 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK-CYRLYP 345 (524)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~-~~~l~~ 345 (524)
+|+|++++||.++.+. |..++.||+||+||.++|. ++.+|+
T Consensus 412 iDip~v~~vi~~~~~~------------------s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVK------------------SKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSCCC------------------SCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCCCC------------------CHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999866543 5668999999999996553 566654
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=3.2e-29 Score=267.27 Aligned_cols=306 Identities=16% Similarity=0.154 Sum_probs=198.8
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH---HHHhCCcccceE
Q 009827 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (524)
Q Consensus 7 ~~~~~~i~~~i~~~~~~ii~apTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v---~~~~~~~~~~~v 81 (524)
+..|...+..+.+|+ +..++||+||| ..+|.++... .+..++++.|++.||.|.++.+ .+.+|..++..+
T Consensus 85 t~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~ 159 (844)
T 1tf5_A 85 FKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNL 159 (844)
T ss_dssp CHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred cHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 455666666777888 88999999999 4445443322 2456888999999999988765 455666666555
Q ss_pred eEeeecccccCcccceeecchHHH-HHHHHhC-------CCCCCCceEEEeCCCcCCCCh---------------HHHHH
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSLNT---------------DILLG 138 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l-~~~l~~~-------~~l~~~~~vIiDE~H~r~~~~---------------~~~~~ 138 (524)
|............++|+|+|||.| ...+... ..++++.++|+||||...++. ++. .
T Consensus 160 gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~-~ 238 (844)
T 1tf5_A 160 NSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLY-V 238 (844)
T ss_dssp TTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHH-H
T ss_pred CCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHH-H
Confidence 522111111223589999999999 5555432 357899999999999422233 232 2
Q ss_pred HHHHHHhhcc---------cCcEEE-----------------EEeccCCh--HHH-----h-hhcCC-CC-------eee
Q 009827 139 LVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKV-----S-KFFSN-CP-------TLN 176 (524)
Q Consensus 139 ~l~~l~~~~~---------~~~~ii-----------------~~SAT~~~--~~~-----~-~~~~~-~~-------~~~ 176 (524)
.+..+....+ ++.++. ++|||.+. ..+ + .+|.. .. ++.
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEE
Confidence 3556665554 234555 77888642 111 1 11211 00 000
Q ss_pred c--------CCcccc------------e----------eEE----------------------------------ecCC-
Q 009827 177 V--------PGKLYP------------V----------EIL----------------------------------HSKE- 191 (524)
Q Consensus 177 i--------~~~~~~------------v----------~~~----------------------------------~~~~- 191 (524)
+ +|+.++ + .+. ..+.
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred eecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCC
Confidence 0 000000 0 000 0000
Q ss_pred --------CCcc--hHHHHHHHHHHHHhc--CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCH
Q 009827 192 --------RPTS--YLESALKTAIDIHVR--EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPP 259 (524)
Q Consensus 192 --------~~~~--~~~~~~~~~~~~~~~--~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~ 259 (524)
+..- ........+...... ..+.++||||+|++.++.++..|... ++.+..+||++..
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~----------gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK----------GIPHQVLNAKNHE 468 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT----------TCCCEEECSSCHH
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEeeCCccH
Confidence 0000 012222333322211 23568999999999999999999876 7778889999999
Q ss_pred HHHhcccCCCCCCceEEEEecCccccccCCC--------CeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccc
Q 009827 260 EMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGR 331 (524)
Q Consensus 260 ~~r~~v~~~f~~g~~~vlvaT~i~e~gidip--------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GR 331 (524)
.++..+.+.++.| .|+||||+|++|+||+ ++.+||++++|. |...|.||+||
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~------------------s~r~y~hr~GR 528 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE------------------SRRIDNQLRGR 528 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS------------------SHHHHHHHHTT
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC------------------CHHHHHhhcCc
Confidence 9988888888776 5999999999999999 899999988766 77799999999
Q ss_pred cCCC-CCCeEEEecCchh
Q 009827 332 AGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 332 aGR~-~~G~~~~l~~~~~ 348 (524)
+||. .+|.++.+++.++
T Consensus 529 TGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 529 SGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSGGGCCEEEEEEEETTS
T ss_pred cccCCCCCeEEEEecHHH
Confidence 9999 8999998887665
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=2.4e-29 Score=270.07 Aligned_cols=300 Identities=15% Similarity=0.133 Sum_probs=177.1
Q ss_pred CchHHHHHHHHHhcc-----CCEEEEEcCCCCcHHHHHHHHHHhc-CCC-------CCcEEEEcccchhHHHHHH-HHHH
Q 009827 5 PILQYEETIVETVEQ-----NPVVVVIGETGSGKSTQLSQILHRH-GYT-------KSGIIGVTQPRRVAAVSVA-RRVA 70 (524)
Q Consensus 5 pi~~~~~~i~~~i~~-----~~~~ii~apTGsGKTt~l~~~l~~~-~~~-------~~~~i~~~~P~r~la~~~~-~~v~ 70 (524)
..+.+|.+.++.+.+ ++.+++++|||||||..+..++... ... .+.+++++.|+++++.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~- 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF- 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC-
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH-
Confidence 567888888887754 5778999999999995444443322 111 4568999999999999988 433
Q ss_pred HHhCCcccceEeEeeecccccCcccceeecchHHHHHHHHh-----CCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009827 71 QELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS-----NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 71 ~~~~~~~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~-----~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~ 145 (524)
+.++.. ++.. .......+.+|+++|++.+...... ......+++||+|||| +....+ ...++.++.
T Consensus 257 ~~~~~~----~~~~--~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~ 327 (590)
T 3h1t_A 257 TPFGDA----RHKI--EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILE 327 (590)
T ss_dssp TTTCSS----EEEC--CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHH
T ss_pred Hhcchh----hhhh--hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHH
Confidence 333322 2210 1122345679999999998876532 2235678999999999 554332 123455555
Q ss_pred hcccCcEEEEEeccCCh---HHHhhhcCCCCeeec-------CCcccceeEEecCC------------------------
Q 009827 146 LRASKLKILITSATLDG---EKVSKFFSNCPTLNV-------PGKLYPVEILHSKE------------------------ 191 (524)
Q Consensus 146 ~~~~~~~ii~~SAT~~~---~~~~~~~~~~~~~~i-------~~~~~~v~~~~~~~------------------------ 191 (524)
..+ ..++++||||+.. .....+|+.. +... .+-..|........
T Consensus 328 ~~~-~~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (590)
T 3h1t_A 328 YFE-PAFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG 405 (590)
T ss_dssp HST-TSEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTSSCCEEEEEEEETTCC--------------------
T ss_pred hCC-cceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccc
Confidence 555 6789999999843 3456677542 2211 01111111110000
Q ss_pred --CCcch---------HHHHHHHHHHHH-hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCH
Q 009827 192 --RPTSY---------LESALKTAIDIH-VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPP 259 (524)
Q Consensus 192 --~~~~~---------~~~~~~~~~~~~-~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~ 259 (524)
...++ .......+.... ...+.+++||||+++++++.+++.|.+......... .-.+..+||+++
T Consensus 406 ~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~~i~g~~~- 482 (590)
T 3h1t_A 406 EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH--PDYVARVTSEEG- 482 (590)
T ss_dssp ---CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC--TTSEEECSSTTH-
T ss_pred cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC--CCeEEEEeCCCh-
Confidence 00000 011111222211 124568999999999999999999988643321111 223667899876
Q ss_pred HHHhcccCCCCCCceE---EEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC
Q 009827 260 EMQVRVFSPPPPNCRR---FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (524)
Q Consensus 260 ~~r~~v~~~f~~g~~~---vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~ 336 (524)
++|+.+++.|++|..+ |++||+++++|+|+|++++||.++.+ .|...|+||+||+||..
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~------------------~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVV------------------NSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCC------------------CCHHHHHHHHTTSCCCB
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecC------------------CChHHHHHHHhhhcccC
Confidence 4789999999998765 88999999999999999999975543 37889999999999985
Q ss_pred C
Q 009827 337 P 337 (524)
Q Consensus 337 ~ 337 (524)
+
T Consensus 545 ~ 545 (590)
T 3h1t_A 545 E 545 (590)
T ss_dssp G
T ss_pred c
Confidence 4
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=4.8e-28 Score=257.52 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=95.2
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC
Q 009827 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip 290 (524)
..+.++||||+|++.++.+++.|.+. ++.+..+||.+...++..+.+.++.| .|+||||+|++|+||+
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~----------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~ 506 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKA----------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIV 506 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHT----------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCC
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHC----------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCcc
Confidence 34568999999999999999999886 77788899999988898889999988 6999999999999999
Q ss_pred C--------------------------------e-----eEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccC
Q 009827 291 G--------------------------------V-----VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (524)
Q Consensus 291 ~--------------------------------v-----~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 333 (524)
. | .+||++++|. |...|.||+||+|
T Consensus 507 l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe------------------s~riy~qr~GRTG 568 (853)
T 2fsf_A 507 LGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE------------------SRRIDNQLRGRSG 568 (853)
T ss_dssp TTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS------------------SHHHHHHHHTTSS
T ss_pred CCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC------------------CHHHHHhhccccc
Confidence 7 4 6999988765 7778999999999
Q ss_pred CC-CCCeEEEecCchh
Q 009827 334 RT-RPGKCYRLYPSTV 348 (524)
Q Consensus 334 R~-~~G~~~~l~~~~~ 348 (524)
|. .||.++.+.+.++
T Consensus 569 RqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 569 RQGDAGSSRFYLSMED 584 (853)
T ss_dssp GGGCCEEEEEEEETTS
T ss_pred cCCCCeeEEEEecccH
Confidence 99 7999988876655
No 52
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=233.16 Aligned_cols=136 Identities=31% Similarity=0.572 Sum_probs=122.0
Q ss_pred cccccC-CCCCCHHHHHHHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcc
Q 009827 383 VLKFDF-LDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTL 461 (524)
Q Consensus 383 ~~~~~~-~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f 461 (524)
...|+| +|||+.+++..|++.|..+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|+|+++++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 356788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHccCchHHHHHHcCCChHH-Hhhh
Q 009827 462 LPGRSKSTEKKRKHTPLELPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQMLV-AFWR 522 (524)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-~~~~ 522 (524)
..|.+.+++++.++.+|. +..|||++++|+|++|.+.+...+||++|+||++. .+|+
T Consensus 85 ~~p~~~~~~a~~~~~~f~----~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~ 142 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFH----QTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQ 142 (270)
T ss_dssp CCCGGGHHHHHHHHHTTC----BTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHcc----CCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHH
Confidence 999988888999999998 78899999999999999888888999999999996 4554
No 53
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=225.46 Aligned_cols=172 Identities=41% Similarity=0.642 Sum_probs=151.6
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC----CCcEEEEcccchhHHHHHHHHHHHHhCCccc
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT----KSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~----~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~ 78 (524)
.+|++.+|++++..+.+|++++++|||||||||++..++...... .+..++++.|+++++.|+++++++.++..++
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 589999999999999999999999999999998877776543221 2348899999999999999999999999999
Q ss_pred ceEeEeeecccccC-cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 79 ~~vg~~~~~~~~~~-~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
..+|+..+++.... .+++|+++|||++++.+.. .++++++||+||+|+++++.++....++.+....+ +.|+++||
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~S 215 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMS 215 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEE
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEe
Confidence 99999888877664 6789999999999999876 48999999999999878999999888899988876 89999999
Q ss_pred ccCChHHHhhhcCCCCeeec
Q 009827 158 ATLDGEKVSKFFSNCPTLNV 177 (524)
Q Consensus 158 AT~~~~~~~~~~~~~~~~~i 177 (524)
||++.+.+++||+++|++.+
T Consensus 216 AT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 216 ATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp CSSCCHHHHHHTTSCCCEEC
T ss_pred cCCCHHHHHHHcCCCCEEeC
Confidence 99999999999999988764
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=3.2e-27 Score=251.40 Aligned_cols=306 Identities=19% Similarity=0.166 Sum_probs=200.2
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH---HHHhCCcccceE
Q 009827 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (524)
Q Consensus 7 ~~~~~~i~~~i~~~~~~ii~apTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v---~~~~~~~~~~~v 81 (524)
+..|...+..+.+|+ +..++||+||| ..+|.++... .+..+.++.|++.||.|.++.+ .+.+|+.++..+
T Consensus 113 ~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~ 187 (922)
T 1nkt_A 113 FDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVIL 187 (922)
T ss_dssp CHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 345555556667776 88999999999 3444444332 2456888999999999988765 455666666555
Q ss_pred eEeeecccccCcccceeecchHHH-HHHHHhC-------CCCCCCceEEEeCCCcCCC-C---------------hHHHH
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-N---------------TDILL 137 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l-~~~l~~~-------~~l~~~~~vIiDE~H~r~~-~---------------~~~~~ 137 (524)
|............++|+|+|||.| ...+... ..++++.++||||||. .+ + +++..
T Consensus 188 gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs-mLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 188 ATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS-ILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp TTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH-HHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH-HHHhcCccceeecCCCCcchhHHH
Confidence 522111111223579999999998 5666433 3578899999999994 43 3 23433
Q ss_pred HHHHHHHhhcc---------cCcEEE-----------------EEeccCCh--HHHh------hhcC--------CCCee
Q 009827 138 GLVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKVS------KFFS--------NCPTL 175 (524)
Q Consensus 138 ~~l~~l~~~~~---------~~~~ii-----------------~~SAT~~~--~~~~------~~~~--------~~~~~ 175 (524)
. +..+....+ ++.++. ++|||.+. ..+. .+|. +..++
T Consensus 267 ~-i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vv 345 (922)
T 1nkt_A 267 E-FARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVL 345 (922)
T ss_dssp H-HHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEE
T ss_pred H-HHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceE
Confidence 3 556666554 466777 88999753 1111 1221 11111
Q ss_pred ecC---Cc-----cc------------ce----------eEE----------------------------------ecCC
Q 009827 176 NVP---GK-----LY------------PV----------EIL----------------------------------HSKE 191 (524)
Q Consensus 176 ~i~---~~-----~~------------~v----------~~~----------------------------------~~~~ 191 (524)
.+. |+ .+ .+ .+. ..+.
T Consensus 346 iVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt 425 (922)
T 1nkt_A 346 IVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPT 425 (922)
T ss_dssp EBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCC
T ss_pred EEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCC
Confidence 111 11 00 00 000 0000
Q ss_pred C----C---c--ch--HHHHHHHHHHHHh--cCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCC
Q 009827 192 R----P---T--SY--LESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (524)
Q Consensus 192 ~----~---~--~~--~~~~~~~~~~~~~--~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~ 258 (524)
. . . -| .......+..... ...+.++||||+|++.++.+++.|.+. ++.+..+||...
T Consensus 426 n~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~----------Gi~~~vLnak~~ 495 (922)
T 1nkt_A 426 NMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----------RIPHNVLNAKYH 495 (922)
T ss_dssp SSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----------TCCCEEECSSCH
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEecCChh
Confidence 0 0 0 00 1222333332221 123458999999999999999999886 777888999998
Q ss_pred HHHHhcccCCCCCCceEEEEecCccccccCCCCe----------------------------------------------
Q 009827 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV---------------------------------------------- 292 (524)
Q Consensus 259 ~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~v---------------------------------------------- 292 (524)
..++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88888888999988 699999999999999974
Q ss_pred ------eEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009827 293 ------VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 293 ------~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
.+||++.+|. |...|.||+||+||. .||.+..+.+.++.
T Consensus 574 V~~~GGlhVI~te~pe------------------s~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHE------------------SRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTSEEEEECSCCS------------------SHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhcCCcEEEeccCCC------------------CHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999988765 777899999999999 79998888765543
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.8e-27 Score=220.83 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec
Q 009827 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (524)
Q Consensus 201 ~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT 280 (524)
+..+.++....+++++||||+++.+++.+++.|... ++.+.++||+|++++|..+++.|++|..+|||||
T Consensus 19 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 19 LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp HHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 334444444556789999999999999999999886 7788999999999999999999999999999999
Q ss_pred CccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh-----------
Q 009827 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV----------- 348 (524)
Q Consensus 281 ~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~----------- 348 (524)
+++++|+|+|++++||++|+|. |..+|+||+|||||. ++|.||.+++..+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~ 150 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAV 150 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCS------------------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCCCc------------------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999988755 788999999999999 6899999999887
Q ss_pred ---hhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccc-----cCCCCCCHHHHHHHHHHH
Q 009827 349 ---YHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQL 404 (524)
Q Consensus 349 ---~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~-----~~~~~p~~~~i~~a~~~L 404 (524)
+.. +.....|++.+..+..+++.++.+...+ ...| +++++|+++.+..|+..|
T Consensus 151 ~~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 151 GRRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp SSCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHH--HTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCcCee-cCCCCHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 333 4555667788888888888888876544 3334 567888899998888765
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=9.4e-27 Score=261.12 Aligned_cols=316 Identities=12% Similarity=0.100 Sum_probs=201.3
Q ss_pred CCCchHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009827 3 NLPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~--~~~~ii~apTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~ 79 (524)
.+.++++|.+++..+.. +..+++.++||+|||.++..++... ......++++++|+ .++.|+...+.+.++..+..
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEE
Confidence 35678899999887665 4588999999999995544444332 22234579999999 88899999998888766543
Q ss_pred eEeEeee----cccccCcccceeecchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCChH----HHHHHHHHHHhhccc
Q 009827 80 EVGYAIR----FEDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRAS 149 (524)
Q Consensus 80 ~vg~~~~----~~~~~~~~~~I~~~T~g~l~~~l~~~--~~l~~~~~vIiDE~H~r~~~~~----~~~~~l~~l~~~~~~ 149 (524)
..|.... .........+|+++|++.+.+..... ....++++||+||+|. ..+.. .....++.+.. .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~-~kn~~~~~s~~~~~l~~L~~---~ 305 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH-LVWSEDAPSREYQAIEQLAE---H 305 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC-CCCBTTBCCHHHHHHHHHHT---T
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh-hcCCCCcchHHHHHHHHHhh---c
Confidence 3221100 00112235689999998875421000 1245789999999995 33221 11222333322 2
Q ss_pred CcEEEEEeccCChHHHh------hhcC-----CC------------------------C---------------------
Q 009827 150 KLKILITSATLDGEKVS------KFFS-----NC------------------------P--------------------- 173 (524)
Q Consensus 150 ~~~ii~~SAT~~~~~~~------~~~~-----~~------------------------~--------------------- 173 (524)
..++++||||+-..... .++. +. +
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 45699999998321000 1100 00 0
Q ss_pred ------------------------------eeecCCc----ccceeE---EecCCC------------------------
Q 009827 174 ------------------------------TLNVPGK----LYPVEI---LHSKER------------------------ 192 (524)
Q Consensus 174 ------------------------------~~~i~~~----~~~v~~---~~~~~~------------------------ 192 (524)
++....+ .+|... .....+
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 0000000 000000 000000
Q ss_pred -----------------CcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecC
Q 009827 193 -----------------PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (524)
Q Consensus 193 -----------------~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~ 255 (524)
...........+..+....+++++||||+++..++.+++.|.+. .++.+..+||
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~---------~g~~~~~lhG 536 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER---------EGIRAAVFHE 536 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT---------TCCCEEEECT
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH---------cCCcEEEEeC
Confidence 00000122334444444467789999999999999999999864 2778899999
Q ss_pred CCCHHHHhcccCCCCCCc--eEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccC
Q 009827 256 SLPPEMQVRVFSPPPPNC--RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (524)
Q Consensus 256 ~l~~~~r~~v~~~f~~g~--~~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 333 (524)
+|+.++|..+++.|++|. .+|||||+++++|+|+|++++||+++.| .+...|.||+||+|
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p------------------~~~~~~~Q~~GR~~ 598 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP------------------FNPDLLEQRIGRLD 598 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC------------------SSHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCC------------------CCHHHHHHHhhccc
Confidence 999999999999999998 9999999999999999999999987653 37789999999999
Q ss_pred CC-CCC--eEEEecCchhhh
Q 009827 334 RT-RPG--KCYRLYPSTVYH 350 (524)
Q Consensus 334 R~-~~G--~~~~l~~~~~~~ 350 (524)
|. +.| .+|.++.+...+
T Consensus 599 R~Gq~~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 599 RIGQAHDIQIHVPYLEKTAQ 618 (968)
T ss_dssp CSSSCSCCEEEEEEETTSHH
T ss_pred cCCCCceEEEEEecCCChHH
Confidence 98 445 456666554443
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.2e-26 Score=225.42 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=144.4
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccc
Q 009827 205 IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284 (524)
Q Consensus 205 ~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e 284 (524)
.+++....++++||||+++++++.+++.|... ++.+.++||+|++++|..+++.|++|.++|+|||++++
T Consensus 20 ~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 20 SDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 33333344789999999999999999999775 77889999999999999999999999999999999999
Q ss_pred cccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh--------------h
Q 009827 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV--------------Y 349 (524)
Q Consensus 285 ~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~--------------~ 349 (524)
+|+|+|++++||++|+|. +..+|+||+|||||. ++|.||.+++..+ +
T Consensus 90 ~Gidi~~v~~VI~~d~p~------------------s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVHYRMPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEESSCCS------------------STTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEEcCCCC------------------CHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 999999999999998765 667999999999999 6999999999877 3
Q ss_pred hhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccc-----cCCCCCCHHHHHHHHHHHHHccc
Q 009827 350 HDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQLYLIDA 409 (524)
Q Consensus 350 ~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~-----~~~~~p~~~~i~~a~~~L~~~g~ 409 (524)
.. +.....|+|.+..+..+++.++.++..+ ...| +++++|+.+.+..|+..|.....
T Consensus 152 ~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KR-VNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EE-CCCCCHHHHHHHHHHHHHHHHTTSCHHH--HHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eE-eCCCCHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 33 5566678899999999999998765443 4444 56788999999999999966544
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=1.3e-24 Score=228.86 Aligned_cols=309 Identities=15% Similarity=0.103 Sum_probs=187.2
Q ss_pred CchHHHHHHHHHh----ccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhC-Cccc
Q 009827 5 PILQYEETIVETV----EQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLG 78 (524)
Q Consensus 5 pi~~~~~~i~~~i----~~~~~~ii~apTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~v~~~~~-~~~~ 78 (524)
.++++|.+.++.+ ..+...++..+||+|||.++..++... .......++++.|. .++.|+.+.+.+... ..+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEE
Confidence 3688999987766 467788999999999995544444332 22234578888895 567888888876543 1211
Q ss_pred ceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009827 79 EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 79 ~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SA 158 (524)
...| ..........+|+++|++.+.+... ....++++||+||+|. ..+.... ....+...+ ..+.+++||
T Consensus 116 ~~~g---~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~-~kn~~~~---~~~~l~~l~-~~~~l~LTa 185 (500)
T 1z63_A 116 VFHE---DRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN-IKNPQTK---IFKAVKELK-SKYRIALTG 185 (500)
T ss_dssp ECSS---STTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG-GSCTTSH---HHHHHHTSC-EEEEEEECS
T ss_pred EEec---CchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc-cCCHhHH---HHHHHHhhc-cCcEEEEec
Confidence 1111 1111223467899999998865432 1234679999999994 3332211 112222233 457899999
Q ss_pred cCChH---HHh---hhcCC--------------------------------CCe-eecCC------cccceeE---EecC
Q 009827 159 TLDGE---KVS---KFFSN--------------------------------CPT-LNVPG------KLYPVEI---LHSK 190 (524)
Q Consensus 159 T~~~~---~~~---~~~~~--------------------------------~~~-~~i~~------~~~~v~~---~~~~ 190 (524)
|+-.+ ++. .++.. .++ +.... ...|... .+..
T Consensus 186 TP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~ 265 (500)
T 1z63_A 186 TPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCN 265 (500)
T ss_dssp SCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcC
Confidence 98322 111 11100 011 11000 0011111 1111
Q ss_pred CCCc--chHH-------------------------------------------------HHHHHHHHHHh--cCCCCCEE
Q 009827 191 ERPT--SYLE-------------------------------------------------SALKTAIDIHV--REPEGDVL 217 (524)
Q Consensus 191 ~~~~--~~~~-------------------------------------------------~~~~~~~~~~~--~~~~g~iL 217 (524)
.... .... .....+.++.. ..++.++|
T Consensus 266 l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~l 345 (500)
T 1z63_A 266 LTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIA 345 (500)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEE
Confidence 0000 0000 00111111111 13567999
Q ss_pred EecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC-ceE-EEEecCccccccCCCCeeEE
Q 009827 218 IFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 218 VF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~-vlvaT~i~e~gidip~v~~V 295 (524)
||++.+..++.+++.|.... +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++|
T Consensus 346 vF~~~~~~~~~l~~~l~~~~---------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 346 IFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp EECSCHHHHHHHHHHHHHHH---------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred EEEehHHHHHHHHHHHHHhh---------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 99999999999999998752 55677799999999999999999988 454 79999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchhhhh
Q 009827 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~~~ 351 (524)
|.++.+. +...+.||+||++|.+ +..+|+|+++...+.
T Consensus 417 i~~d~~~------------------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 417 IHFDRWW------------------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp EESSCCS------------------CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred EEeCCCC------------------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 9876543 4557789999999983 345788887766554
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.91 E-value=5.8e-24 Score=236.87 Aligned_cols=310 Identities=11% Similarity=0.019 Sum_probs=192.2
Q ss_pred chHHHHHHHHHhcc--------------CCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHH
Q 009827 6 ILQYEETIVETVEQ--------------NPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVA 70 (524)
Q Consensus 6 i~~~~~~i~~~i~~--------------~~~~ii~apTGsGKTt~l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~ 70 (524)
.+.+|.+.++.+.. ++..++.++||||||..+..++.... .....+++++.||+.++.|+.+.+.
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~ 351 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQ 351 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHH
Confidence 45677777666543 36789999999999933322333222 1223589999999999999988775
Q ss_pred HHhCCcccceEeEeee-ccccc-CcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009827 71 QELGVRLGEEVGYAIR-FEDRT-SERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 71 ~~~~~~~~~~vg~~~~-~~~~~-~~~~~I~~~T~g~l~~~l~~~~---~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~ 145 (524)
......+.. +.... ..... ....+|+++|++.+...+.... .+....+||+|||| |+...+. .+.+..
T Consensus 352 ~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~~ 424 (1038)
T 2w00_A 352 RFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLKK 424 (1038)
T ss_dssp TTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHHH
T ss_pred Hhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHHH
Confidence 533221110 11100 00111 2457899999999988775432 45678999999999 6654332 345555
Q ss_pred hcccCcEEEEEeccCCh-------HHHhhhcCCCCeeec-------CCcccceeEEecCCCC------------------
Q 009827 146 LRASKLKILITSATLDG-------EKVSKFFSNCPTLNV-------PGKLYPVEILHSKERP------------------ 193 (524)
Q Consensus 146 ~~~~~~~ii~~SAT~~~-------~~~~~~~~~~~~~~i-------~~~~~~v~~~~~~~~~------------------ 193 (524)
..+ +.+++++|||+.. .....+||.. +... .|-..|+.+.|.....
T Consensus 425 ~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~ 502 (1038)
T 2w00_A 425 KFK-RYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAE 502 (1038)
T ss_dssp HCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTC
T ss_pred hCC-cccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHH
Confidence 566 7899999999843 2355666542 2111 2333444444432110
Q ss_pred -------cchHHHHHHHHHHHHhc--------CCCCCEEEecCcHHHHHHHHHHHHHHhhhc----CCCCCCCeEE-EEe
Q 009827 194 -------TSYLESALKTAIDIHVR--------EPEGDVLIFMTGQDDIEKLVSKLEDKIRSL----DEGSCMDAVI-LPL 253 (524)
Q Consensus 194 -------~~~~~~~~~~~~~~~~~--------~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~----~~~~~~~~~v-~~l 253 (524)
.+.+...+..++..... ..++++||||+++..|..+++.|.+..... +.. .+..+ ..+
T Consensus 503 ~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~--~~~k~avv~ 580 (1038)
T 2w00_A 503 NQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY--KPLRIATIF 580 (1038)
T ss_dssp STTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC--CCCCEEEEC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc--ccCcEEEEE
Confidence 00111222222222211 124589999999999999999998875321 111 12333 345
Q ss_pred cCC----------C----------CH-----------------------------HHHhcccCCCCCCceEEEEecCccc
Q 009827 254 HGS----------L----------PP-----------------------------EMQVRVFSPPPPNCRRFIVSTNIAE 284 (524)
Q Consensus 254 h~~----------l----------~~-----------------------------~~r~~v~~~f~~g~~~vlvaT~i~e 284 (524)
|++ + ++ .+|..+.+.|++|..+|||+|+++.
T Consensus 581 s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll 660 (1038)
T 2w00_A 581 SFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL 660 (1038)
T ss_dssp CCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS
T ss_pred eCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHH
Confidence 542 2 22 1377888899999999999999999
Q ss_pred cccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCC-----CeEEEecC
Q 009827 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-----GKCYRLYP 345 (524)
Q Consensus 285 ~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~-----G~~~~l~~ 345 (524)
+|+|+|.+.+ +..+ .|.+...++||+||+||..+ |.++.+..
T Consensus 661 tGfDiP~l~t-lylD------------------kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 661 TGFDAPTLNT-LFVD------------------KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSCCCTTEEE-EEEE------------------SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hCcCcccccE-EEEc------------------cCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999954 4322 24467789999999999854 55555543
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.88 E-value=1.6e-21 Score=210.05 Aligned_cols=115 Identities=19% Similarity=0.127 Sum_probs=102.0
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCC
Q 009827 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~ 291 (524)
.++++||||+|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCC
Confidence 4569999999999999999999886 677888999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhh
Q 009827 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (524)
Q Consensus 292 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 349 (524)
+++||+++..+. | .|.|..+|+||+|||||.++|.|+.++++.+.
T Consensus 508 v~lVI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 508 VSLVAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp EEEEEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred CCEEEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 999999875331 1 14578899999999999999999999976543
No 61
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.88 E-value=2.6e-21 Score=201.92 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=118.2
Q ss_pred cEEEEEeccCCh--HHHhhhcCCCCeeecCCcccceeEEecC---CCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHH
Q 009827 151 LKILITSATLDG--EKVSKFFSNCPTLNVPGKLYPVEILHSK---ERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (524)
Q Consensus 151 ~~ii~~SAT~~~--~~~~~~~~~~~~~~i~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~ 225 (524)
.++.+||+|+.. +.|.+.+ +..++.++............ ....+.....+..+...+ ..+.++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHH
Confidence 369999999954 3566666 35677776533211111100 111222223333333332 235689999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC--------CeeEEEe
Q 009827 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVID 297 (524)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip--------~v~~VId 297 (524)
++.+++.|.+. ++....+||+....++..+...++.| .|+||||+|++|+||+ +..+||+
T Consensus 487 sE~Ls~~L~~~----------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn 554 (822)
T 3jux_A 487 SELLSSMLKKK----------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554 (822)
T ss_dssp HHHHHHHHHTT----------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHC----------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe
Confidence 99999999876 77778899997766776666667666 5999999999999998 6679999
Q ss_pred CCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009827 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 298 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
+.+|. |...|.||+||+||. .+|.++.+++.++
T Consensus 555 te~Pe------------------s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 TERHE------------------SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp SSCCS------------------SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCCCC------------------CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 88765 777999999999999 7999988887665
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=2.1e-20 Score=201.53 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=97.0
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCce---EEEEecCcccccc
Q 009827 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR---RFIVSTNIAETSL 287 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~---~vlvaT~i~e~gi 287 (524)
.++.++|||+..+..++.+...|... ++.+..+||+++.++|.++++.|++|.. .+|+||.+++.|+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~----------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR----------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH----------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC----------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCc
Confidence 34679999999999999999988876 7778889999999999999999998854 5899999999999
Q ss_pred CCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchhhhh
Q 009827 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (524)
Q Consensus 288 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~~~ 351 (524)
|++++++||.++. |.+.+.+.|+.||++|.+ +..+|+++++...+.
T Consensus 484 nl~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 484 NLIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CCTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred ccccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 9999999998664 347788999999999983 457888887776554
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.5e-21 Score=212.81 Aligned_cols=313 Identities=15% Similarity=0.115 Sum_probs=192.6
Q ss_pred CCchHHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHhc--CCCCCcEEEEcccchhHHHHHHHHHHHHhC-Cc
Q 009827 4 LPILQYEETIVETVE----QNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VR 76 (524)
Q Consensus 4 lpi~~~~~~i~~~i~----~~~~~ii~apTGsGKTt~l~~~l~~~--~~~~~~~i~~~~P~r~la~~~~~~v~~~~~-~~ 76 (524)
..++.||.+.++.+. .+...++..+||+|||.++..++... .....+.+++++| ..+..|..+.+.+... ..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 457889999887554 78899999999999995544444322 1123456788889 5567788888866652 22
Q ss_pred ccceEeEeeec--------------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009827 77 LGEEVGYAIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 77 ~~~~vg~~~~~--------------~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~ 142 (524)
+....|..... ........+|+++|++.+.+....- .-.++++||+||+|. .-+.... ...
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH~-lkn~~s~---~~~ 388 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAHR-LKNAESS---LYE 388 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGGG-GCCSSSH---HHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhhh-hcCchhH---HHH
Confidence 22222211000 0012245789999999987643211 122578999999994 4222211 122
Q ss_pred HHhhcccCcEEEEEeccCCh---HHH---hhhcCCC-----------------------------CeeecC-----Cccc
Q 009827 143 LVNLRASKLKILITSATLDG---EKV---SKFFSNC-----------------------------PTLNVP-----GKLY 182 (524)
Q Consensus 143 l~~~~~~~~~ii~~SAT~~~---~~~---~~~~~~~-----------------------------~~~~i~-----~~~~ 182 (524)
.+...+ ....+++|||+-. ..+ -+|+... +++... ....
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 222333 4567889999821 211 1222100 000000 0001
Q ss_pred cee---EEecCCCCc--chH------------------------------------------------------------
Q 009827 183 PVE---ILHSKERPT--SYL------------------------------------------------------------ 197 (524)
Q Consensus 183 ~v~---~~~~~~~~~--~~~------------------------------------------------------------ 197 (524)
|-. +.+...... .+.
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 100 011100000 000
Q ss_pred -H------HHHHHHHHHH--hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCC
Q 009827 198 -E------SALKTAIDIH--VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSP 268 (524)
Q Consensus 198 -~------~~~~~~~~~~--~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 268 (524)
. ..+..+..+. ....+.++|||+.....+..+...|... ++.+..+||+++.++|..+++.
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHHT
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHH
Confidence 0 0011111111 1234569999999999999999999876 6778889999999999999999
Q ss_pred CCCCce---EEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEE
Q 009827 269 PPPNCR---RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYR 342 (524)
Q Consensus 269 f~~g~~---~vlvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~ 342 (524)
|+++.. .+|+||.+++.|||++++++||.++. |.+...+.||.||++|. ++..+|+
T Consensus 618 F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 618 FNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp TSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred hhCCCCCceEEEEecccccCCCCccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 998543 59999999999999999999998654 33666888999999996 4568899
Q ss_pred ecCchhhhh
Q 009827 343 LYPSTVYHD 351 (524)
Q Consensus 343 l~~~~~~~~ 351 (524)
|+++...+.
T Consensus 680 lv~~~TiEe 688 (800)
T 3mwy_W 680 LVSKDTVEE 688 (800)
T ss_dssp EEETTSHHH
T ss_pred EecCCCHHH
Confidence 998887765
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=175.12 Aligned_cols=130 Identities=15% Similarity=0.242 Sum_probs=108.0
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEe
Q 009827 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (524)
Q Consensus 200 ~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlva 279 (524)
....+..+....+.+++||||+++..++.++..|... ++.+..+||+|++++|..+++.|++|..+||||
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLva 90 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLIT 90 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 4445555555566789999999999999999999875 677889999999999999999999999999999
Q ss_pred cCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 280 T~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|+++++|+|+|++++||+++.|.... ...+..+|+||+||+||. ++|.|+.+++..+...
T Consensus 91 T~~~~~Gid~~~~~~Vi~~d~p~~~~------------~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 91 TNVCARGIDVKQVTIVVNFDLPVKQG------------EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151 (175)
T ss_dssp CCSCCTTTCCTTEEEEEESSCCC--C------------CSCCHHHHHHHHCBC----CCEEEEEEECGGGHHH
T ss_pred ecchhcCCCcccCCEEEEeCCCCCcc------------ccCCHHHHHHHhcccccCCCCceEEEEEccchHHH
Confidence 99999999999999999988763211 125888999999999998 7899999998876543
No 65
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.85 E-value=1.6e-21 Score=173.04 Aligned_cols=116 Identities=21% Similarity=0.331 Sum_probs=104.1
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCcccccc
Q 009827 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSL 287 (524)
Q Consensus 208 ~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gi 287 (524)
.....++++||||+++++++.+++.|... ++.+..+||+|++++|..+++.|++|..+|||||+++++|+
T Consensus 30 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gl 99 (163)
T 2hjv_A 30 LMTENPDSCIIFCRTKEHVNQLTDELDDL----------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGI 99 (163)
T ss_dssp HHHHCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTC
T ss_pred HHhcCCCcEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 33345679999999999999999999875 67889999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 288 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|+|++++||+++.|. +..+|.||+||+||. ++|.|+.++++.+...
T Consensus 100 d~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 100 DIENISLVINYDLPL------------------EKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp CCSCCSEEEESSCCS------------------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred chhcCCEEEEeCCCC------------------CHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 999999999987644 778999999999999 7899999998776543
No 66
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=2.1e-21 Score=172.74 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=101.8
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCcc
Q 009827 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA 283 (524)
Q Consensus 204 ~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~ 283 (524)
+..+....+.+++||||++++.++.+++.|... ++.+..+||+|++++|..+++.|++|..+|||||+++
T Consensus 21 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 90 (165)
T 1fuk_A 21 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 90 (165)
T ss_dssp HHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGG
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 333333456789999999999999999999875 6778899999999999999999999999999999999
Q ss_pred ccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 284 e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
++|+|+|++++||+++.|. +..+|.||+||+||. ++|.|+.++++++...
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPA------------------NKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp TTTCCCCSCSEEEESSCCS------------------SGGGGGGSSCSCC-----CEEEEEEETTTHHH
T ss_pred hcCCCcccCCEEEEeCCCC------------------CHHHHHHHhcccccCCCCceEEEEEcchHHHH
Confidence 9999999999999988654 667889999999999 7899999998776543
No 67
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.84 E-value=7.4e-21 Score=204.88 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=101.9
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCC
Q 009827 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~ 291 (524)
.++++||||+|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCC
Confidence 4579999999999999999999886 677888999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhh
Q 009827 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (524)
Q Consensus 292 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 349 (524)
+++||+++..+. | .|.|..+|+||+|||||..+|.|+.++++.+.
T Consensus 514 v~lVi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 514 VSLVAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp EEEEEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred CCEEEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999999875331 1 14478899999999999999999999977543
No 68
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=4.7e-21 Score=171.50 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=104.9
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc
Q 009827 203 TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (524)
Q Consensus 203 ~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i 282 (524)
.+..+....+.+++||||+++..++.+++.|... ++.+..+||+|++++|..+++.|++|..+|||||++
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 3444444456789999999999999999999876 677889999999999999999999999999999999
Q ss_pred cccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009827 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 283 ~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
+++|+|+|++++||+++.|. |..+|.||+||+||. ++|.|+.+++..+
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPE------------------DSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCS------------------SHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred hhcCcchhhCCEEEEECCCC------------------CHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 99999999999999987654 778999999999999 7899999998654
No 69
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.82 E-value=9.9e-21 Score=171.37 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=88.5
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCC
Q 009827 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gidip~ 291 (524)
+++++||||+++..++.+++.|... ++.+..+||+|++++|..+++.|++|..+|||||+++++|+|+|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCccc
Confidence 5679999999999999999999875 678899999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009827 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 292 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+++||+++.|. +..+|.||+||+||. ++|.|+.++++.+...
T Consensus 115 ~~~VI~~d~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 115 VKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157 (185)
T ss_dssp BSEEEESSCCS------------------SHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG
T ss_pred CCEEEEeCCCC------------------CHHHHHHHccccCCCCCCcEEEEEEchhhHHH
Confidence 99999977644 788999999999999 6899999998876543
No 70
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.82 E-value=8.4e-20 Score=170.89 Aligned_cols=174 Identities=19% Similarity=0.218 Sum_probs=117.0
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHh---CCcccc
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE 79 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~v~~~~---~~~~~~ 79 (524)
..+.+|.+++..+.+++++++++|||||||.. +..++... ....+.+++++.|+++++.|+++.+.+.. +..+..
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 115 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 115 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEE
Confidence 35789999999999999999999999999943 33333333 22345689999999999999999886543 233333
Q ss_pred eEeEeeeccc-ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 80 EVGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 80 ~vg~~~~~~~-~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
..|.....+. ....+.+|+++||+.+.+.+.... .+.++++||+||+|. ..+.++.. .+..++...+.+.++++||
T Consensus 116 ~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~-~l~~i~~~~~~~~~~i~lS 193 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFKE-QIYQIFTLLPPTTQVVLLS 193 (224)
T ss_dssp ECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCHH-HHHHHHHHSCTTCEEEEEE
T ss_pred EeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH-HhhhhhHH-HHHHHHHhCCccCeEEEEE
Confidence 3332211111 112348999999999998886544 688999999999993 33333332 3455555555689999999
Q ss_pred ccCChH---HHhhhcCCCCeeecCCc
Q 009827 158 ATLDGE---KVSKFFSNCPTLNVPGK 180 (524)
Q Consensus 158 AT~~~~---~~~~~~~~~~~~~i~~~ 180 (524)
||++.+ .+..|++++..+.+.++
T Consensus 194 AT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 194 ATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp SSCCHHHHHHHHHHCSSCEEEC----
T ss_pred eecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999874 35667766666665544
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=172.17 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=112.2
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcC------CCCCcEEEEcccchhHHHHHHHHHHHHhC--
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt--~l~~~l~~~~------~~~~~~i~~~~P~r~la~~~~~~v~~~~~-- 74 (524)
..+.+|.+++..+.+|++++++||||||||. +++.+..... ...+.+++++.|+++++.|+++++.+...
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 121 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG 121 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 3567899999999999999999999999993 3333322211 12456789999999999999999877532
Q ss_pred CcccceEeEeeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009827 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 75 ~~~~~~vg~~~~~~--~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~ 151 (524)
..+....|...... .....+.+|+++||+.+.+.+.... .+.++++||+||+| +..+.++... +..++...+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~~~~ 199 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQ-IRKILLDVRPDR 199 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHH-HHHHHHHSCSSC
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHH-HHHHHHhCCcCC
Confidence 22222222111111 1112357999999999999886655 68999999999999 3433333333 455555555689
Q ss_pred EEEEEeccCChH---HHhhhcCCC
Q 009827 152 KILITSATLDGE---KVSKFFSNC 172 (524)
Q Consensus 152 ~ii~~SAT~~~~---~~~~~~~~~ 172 (524)
++++||||++.+ ....++.++
T Consensus 200 ~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 200 QTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp EEEEEESCCCHHHHHHHHTTCSSC
T ss_pred eEEEEEeeCCHHHHHHHHHHCCCC
Confidence 999999999864 244555443
No 72
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=168.79 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecC
Q 009827 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (524)
Q Consensus 202 ~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~ 281 (524)
..+..+... .++++||||+++..++.+++.|... ++.+..+||++++++|..+++.|++|..+|||||+
T Consensus 44 ~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 44 VYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp HHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 334444433 3568999999999999999999876 67788999999999999999999999999999999
Q ss_pred ccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009827 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 282 i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
++++|+|+|++++||+++.|. +..+|.||+||+||. ++|.|+.++++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~------------------~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPE------------------EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCS------------------SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCC------------------CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 999999999999999987644 778999999999999 789999999865
No 73
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=3.4e-19 Score=164.43 Aligned_cols=165 Identities=20% Similarity=0.177 Sum_probs=115.6
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg 82 (524)
..+++|.++++.+.+++++++++|||||||. .+..++... ....+.+++++.|+++++.|+++.+.+......+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 3578999999999999999999999999993 333333332 22335589999999999999999887665322122222
Q ss_pred Eeeecc------cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009827 83 YAIRFE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 83 ~~~~~~------~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~ 155 (524)
...... .......+|+++||+.+.+.+.... .+.+++++|+||+|+ ..+.++. ..+..+....+.+.++++
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~-~~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDFV-QIMEDIILTLPKNRQILL 182 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTTH-HHHHHHHHHSCTTCEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCcH-HHHHHHHHhCCccceEEE
Confidence 211111 1112457899999999988886554 688999999999994 4444443 335666666666899999
Q ss_pred EeccCChHH---HhhhcCC
Q 009827 156 TSATLDGEK---VSKFFSN 171 (524)
Q Consensus 156 ~SAT~~~~~---~~~~~~~ 171 (524)
||||++.+. +..++.+
T Consensus 183 ~SAT~~~~~~~~~~~~l~~ 201 (206)
T 1vec_A 183 YSATFPLSVQKFMNSHLEK 201 (206)
T ss_dssp EESCCCHHHHHHHHHHCSS
T ss_pred EEeeCCHHHHHHHHHHcCC
Confidence 999997643 4456543
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.81 E-value=1.5e-19 Score=169.95 Aligned_cols=170 Identities=16% Similarity=0.092 Sum_probs=117.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
.+.+|.+++..+.+++++++++|||||||.. +..++... ....+.+++++.|+++++.|+++.+.+......+..++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 5789999999999999999999999999943 33333332 223456899999999999999998876543221222321
Q ss_pred eeecc-----cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 84 AIRFE-----DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 84 ~~~~~-----~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
..... .....+.+|+++||+.+.+.+.... .+.+++++|+||+|. ..+.+.....+..++...+.+.+++++|
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 11111 1112357999999999998876544 578899999999994 4333322334566666666688999999
Q ss_pred ccCChH---HHhhhcCCCCeee
Q 009827 158 ATLDGE---KVSKFFSNCPTLN 176 (524)
Q Consensus 158 AT~~~~---~~~~~~~~~~~~~ 176 (524)
||++.+ .+..|++++..+.
T Consensus 206 AT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 206 ATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SCCCHHHHHHHTTTCSSCEEEC
T ss_pred eccCHHHHHHHHHHcCCCeEEE
Confidence 999765 2556665544443
No 75
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=175.40 Aligned_cols=171 Identities=18% Similarity=0.149 Sum_probs=118.0
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHH-HHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009827 6 ILQYEETIVETVEQN--PVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 6 i~~~~~~i~~~i~~~--~~~ii~apTGsGKT-t~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~v 81 (524)
.+.+|.+++..+..+ ++++++|||||||| +++.+++..... ..+.+++++.|+++++.|+++.+.+......+..+
T Consensus 115 pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~ 194 (300)
T 3fmo_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (300)
T ss_dssp CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEE
Confidence 356688888888877 89999999999999 334334433322 33447999999999999999888665543223333
Q ss_pred eEeeec---ccccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 82 GYAIRF---EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 82 g~~~~~---~~~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
++.... ........+|+|+|||.+...+.... .+.++++||+||+| +.++.......+..+....+.+.|++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 332222 22223457899999999999886533 58899999999999 4443222334466677776668999999
Q ss_pred eccCChHH---HhhhcCCCCeeec
Q 009827 157 SATLDGEK---VSKFFSNCPTLNV 177 (524)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~i 177 (524)
|||++.+. ...++.++..+.+
T Consensus 274 SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred eccCCHHHHHHHHHHCCCCeEEEe
Confidence 99998653 3455555544444
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.80 E-value=8.4e-20 Score=170.32 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=116.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCC-------
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV------- 75 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~~------- 75 (524)
..+.+|.++++.+.+++++++++|||||||.. +..++.... ...+.+++++.|+++++.|+++.+.+....
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 35789999999999999999999999999943 333333322 223568999999999999999988766532
Q ss_pred cccceEeEeeec--ccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009827 76 RLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 76 ~~~~~vg~~~~~--~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ 152 (524)
.+....|..... ......+.+|+++||+.+.+.+.... .+.+++++|+||+|. ..+.++. ..+..++...+.+.+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~-~~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGFI-TDVDQIAARMPKDLQ 183 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-HHHTTCH-HHHHHHHHTSCTTCE
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-HhhhChH-HHHHHHHHhCCcccE
Confidence 222222211100 01112367899999999998886544 678999999999994 3322332 335566666666889
Q ss_pred EEEEeccCChH---HHhhhcCCCCeeec
Q 009827 153 ILITSATLDGE---KVSKFFSNCPTLNV 177 (524)
Q Consensus 153 ii~~SAT~~~~---~~~~~~~~~~~~~i 177 (524)
++++|||++.+ .+..++.++..+.+
T Consensus 184 ~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 184 MLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp EEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 99999999764 35566655544443
No 77
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.68 E-value=2.8e-21 Score=172.78 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=103.7
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccc
Q 009827 205 IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284 (524)
Q Consensus 205 ~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e 284 (524)
..+....+++++||||+++..++.+++.|... ++.+..+||+|++++|..+++.|++|..+|||||++++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 33333445679999999999999999999875 67888999999999999999999999999999999999
Q ss_pred cccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009827 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 285 ~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
+|+|+|++++||+++.|. |..+|.||+||+||. ++|.|+.+++..+..
T Consensus 92 ~Gid~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDMPR------------------SGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 999999999999977644 677899999999999 689999999776554
No 78
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=172.10 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=117.3
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHh-cCCCCCcEEEEcccchhHHHHHHHHHHHHh---CCcccc
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE 79 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~-~~l~~-~~~~~~~~i~~~~P~r~la~~~~~~v~~~~---~~~~~~ 79 (524)
..+.+|.+++..+.++++++++||||||||.... .++.. .....+.+++++.|+++++.|+++.+.+.. +..++.
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 4678999999999999999999999999994332 22222 222235579999999999999998876543 333333
Q ss_pred eEeEeeec--ccccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009827 80 EVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 80 ~vg~~~~~--~~~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~ 155 (524)
.+|..... ......+.+|+++||+.+.+.+.... .+.++++||+||+| +..+.++... +..++...+.+.++++
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~~~~l~ 222 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETE-VDKILKVIPRDRKTFL 222 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHSSCSSSEEEE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHH-HHHHHHhCCCCCeEEE
Confidence 33311100 01112467999999999999887533 68899999999999 4444444443 5556666666899999
Q ss_pred EeccCChHH---HhhhcCCCCeee
Q 009827 156 TSATLDGEK---VSKFFSNCPTLN 176 (524)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~~~ 176 (524)
||||++.+. ...++.++..+.
T Consensus 223 ~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 223 FSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EeccCCHHHHHHHHHHCCCCEEEE
Confidence 999998643 445665544443
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=1e-18 Score=162.99 Aligned_cols=168 Identities=17% Similarity=0.136 Sum_probs=115.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
.+.+|.+++..+.+++++++++|||||||.. +..++..... ..+.+++++.|+++++.|+++.+.+......+..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 5789999999999999999999999999943 3333333222 2244899999999999999998876643221222321
Q ss_pred eeeccc---c----cCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCC-hHHHHHHHHHHHhhcccCcEEE
Q 009827 84 AIRFED---R----TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 84 ~~~~~~---~----~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~-~~~~~~~l~~l~~~~~~~~~ii 154 (524)
...... . .....+|+++||+.+...+.... .+.+++++|+||+|. ..+ .++. ..+..++...+.+.+++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~-~~~~~i~~~~~~~~~~i 194 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK-MLEQLDMR-RDVQEIFRMTPHEKQVM 194 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH-HHSSHHHH-HHHHHHHHTSCSSSEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH-HhcccCcH-HHHHHHHHhCCCcCeEE
Confidence 111111 0 11235899999999998886554 688999999999994 433 4443 34566666666689999
Q ss_pred EEeccCChH---HHhhhcCCCCee
Q 009827 155 ITSATLDGE---KVSKFFSNCPTL 175 (524)
Q Consensus 155 ~~SAT~~~~---~~~~~~~~~~~~ 175 (524)
++|||++.+ ....|+.++..+
T Consensus 195 ~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EEESCCCTTTHHHHHTTCSSCEEE
T ss_pred EEEeecCHHHHHHHHHHcCCCeEE
Confidence 999999653 245566554333
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=167.02 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=116.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcC--CCCCcEEEEcccchhHHHHHHHHHHHHhC---Ccccc
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGE 79 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~~--~~~~~~i~~~~P~r~la~~~~~~v~~~~~---~~~~~ 79 (524)
.+.+|.+++..+.+++++++.||||||||. ++..++.... ...+.+++++.|+++++.|+++.+.+... ..+..
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 131 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM 131 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 578999999999999999999999999993 2333333222 22455899999999999999998866543 22221
Q ss_pred eEeEee---ecccccCcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCC---hHHHHHHHHHHHhhcccC
Q 009827 80 EVGYAI---RFEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLN---TDILLGLVKRLVNLRASK 150 (524)
Q Consensus 80 ~vg~~~---~~~~~~~~~~~I~~~T~g~l~~~l~~~~---~l~~~~~vIiDE~H~r~~~---~~~~~~~l~~l~~~~~~~ 150 (524)
..|... ........+.+|+++||+.+...+.... .+.++++||+||+|+ ..+ .++...+...+....+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~~~i~~~~~~~~ 210 (245)
T 3dkp_A 132 IHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK-LFEDGKTGFRDQLASIFLACTSHK 210 (245)
T ss_dssp CCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH-HHHHC--CHHHHHHHHHHHCCCTT
T ss_pred EecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH-hcccccccHHHHHHHHHHhcCCCC
Confidence 111111 1112234567999999999999887653 688999999999994 332 234444333333333347
Q ss_pred cEEEEEeccCChHH---HhhhcCCCCeeecCC
Q 009827 151 LKILITSATLDGEK---VSKFFSNCPTLNVPG 179 (524)
Q Consensus 151 ~~ii~~SAT~~~~~---~~~~~~~~~~~~i~~ 179 (524)
.++++||||++.+. ...++.++..+.+..
T Consensus 211 ~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred cEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 89999999997642 445665555555543
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.79 E-value=4.6e-19 Score=167.35 Aligned_cols=169 Identities=16% Similarity=0.135 Sum_probs=113.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhC---Ccccce
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~v~~~~~---~~~~~~ 80 (524)
.+.+|.+++..+.++++++++||||||||.. +..++.... ...+.+++++.|+++++.|+++.+.+... ..+...
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 132 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHAC 132 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 5788999999999999999999999999943 333333322 22356899999999999999998866542 222222
Q ss_pred EeEeeecc---cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 81 VGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 81 vg~~~~~~---~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
+|...... .......+|+++||+.+.+.+.... .+.++++||+||+|. ..+.++. ..+..++...+.+.+++++
T Consensus 133 ~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~-~~l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 133 IGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-MLSRGFK-DQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp CC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HHHTTCH-HHHHHHHHHSCTTCEEEEE
T ss_pred ECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hhccCcH-HHHHHHHHhCCCCCeEEEE
Confidence 22111111 1112237899999999998886554 678899999999993 3333332 2345555555568999999
Q ss_pred eccCChHH---HhhhcCCCCeee
Q 009827 157 SATLDGEK---VSKFFSNCPTLN 176 (524)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~~~ 176 (524)
|||++.+. +..|+.++..+.
T Consensus 211 SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 211 SATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEC
T ss_pred EEecCHHHHHHHHHHCCCCEEEE
Confidence 99997642 456665544443
No 82
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.79 E-value=2.3e-19 Score=170.08 Aligned_cols=171 Identities=22% Similarity=0.191 Sum_probs=117.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-H-HHHHHHHhcC-----CCCCcEEEEcccchhHHHHHHHHHHHH---hCC
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-T-QLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQE---LGV 75 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKT-t-~l~~~l~~~~-----~~~~~~i~~~~P~r~la~~~~~~v~~~---~~~ 75 (524)
.+.+|.+++..+.+|++++++|||||||| + ++|.+..... ...+.+++++.|+++++.|+++.+.+. .+.
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 131 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRL 131 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc
Confidence 57889999999999999999999999999 3 3333322211 123567899999999999998876543 344
Q ss_pred cccceEeEeeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009827 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 76 ~~~~~vg~~~~~~--~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ 152 (524)
.+....|...... .....+.+|+++||+.+.+.+.... .+.+++++|+||+| +..+.++. ..+..++...+.+.+
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~-~~~~~i~~~~~~~~q 209 (242)
T 3fe2_A 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFE-PQIRKIVDQIRPDRQ 209 (242)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCH-HHHHHHHTTSCSSCE
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcH-HHHHHHHHhCCccce
Confidence 4333333111000 0112347899999999999886655 68999999999999 34333333 335666666666899
Q ss_pred EEEEeccCChH---HHhhhcCCCCeeecC
Q 009827 153 ILITSATLDGE---KVSKFFSNCPTLNVP 178 (524)
Q Consensus 153 ii~~SAT~~~~---~~~~~~~~~~~~~i~ 178 (524)
+++||||++.+ ....++.++..+.+.
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999864 244666555445443
No 83
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=167.50 Aligned_cols=173 Identities=19% Similarity=0.134 Sum_probs=116.6
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhc-----CCCCCcEEEEcccchhHHHHHHHHHHHHhC---C
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRH-----GYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l-~~~l~~~-----~~~~~~~i~~~~P~r~la~~~~~~v~~~~~---~ 75 (524)
..+.+|.+++..+.+++++++++|||||||... ..++... ....+.+++++.|+++++.|+++.+.+... .
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 357889999999999999999999999999432 2222211 112356899999999999999998865542 2
Q ss_pred cccceEeEeeec-ccccCcccceeecchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009827 76 RLGEEVGYAIRF-EDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 76 ~~~~~vg~~~~~-~~~~~~~~~I~~~T~g~l~~~l~~~--~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ 152 (524)
.++...|..... +.....+.+|+++||+.+.+.+... ..+.++++||+||+| +..+.++. ..+..++...+.+.+
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~-~~~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFA-DTMNAVIENLPKKRQ 204 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTH-HHHHHHHHTSCTTSE
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcH-HHHHHHHHhCCCCCe
Confidence 222222211100 0111135799999999999888665 367899999999999 44333333 335566666666889
Q ss_pred EEEEeccCChHH---HhhhcCCCCeeecCC
Q 009827 153 ILITSATLDGEK---VSKFFSNCPTLNVPG 179 (524)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~~~i~~ 179 (524)
+++||||++.+. ...++.++..+.+.+
T Consensus 205 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999997643 345555555555543
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=170.39 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=110.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhc----CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRH----GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt--~l~~~l~~~----~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~ 79 (524)
.+++|.+++..+..+++++++||||||||. +++.+.... ....+.+++++.|+++++.|+++.+.+.... .+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH-HVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT-CCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh-cCc
Confidence 678999999999999999999999999993 333222111 1123567999999999999999988765432 222
Q ss_pred eEeEeeeccc------ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009827 80 EVGYAIRFED------RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 80 ~vg~~~~~~~------~~~~~~~I~~~T~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~ 151 (524)
.++....... ....+.+|+++|||.+...+.... .+.++++||+||+| +..+.++. ..+..++...+.+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~-~~l~~i~~~~~~~~ 233 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFE-EELKQIIKLLPTRR 233 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCH-HHHHHHHHHSCSSS
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHH-HHHHHHHHhCCCCC
Confidence 3322111111 111347899999999999887654 68899999999999 44433333 33566666666689
Q ss_pred EEEEEeccCChH
Q 009827 152 KILITSATLDGE 163 (524)
Q Consensus 152 ~ii~~SAT~~~~ 163 (524)
++++||||++.+
T Consensus 234 q~l~~SAT~~~~ 245 (262)
T 3ly5_A 234 QTMLFSATQTRK 245 (262)
T ss_dssp EEEEECSSCCHH
T ss_pred eEEEEEecCCHH
Confidence 999999999865
No 85
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.78 E-value=1.3e-18 Score=160.71 Aligned_cols=170 Identities=21% Similarity=0.156 Sum_probs=115.7
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcC----CCCCcEEEEcccchhHHHHHHHHHHHHhCC-ccc
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG----YTKSGIIGVTQPRRVAAVSVARRVAQELGV-RLG 78 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~-l~~~l~~~~----~~~~~~i~~~~P~r~la~~~~~~v~~~~~~-~~~ 78 (524)
..+++|.+++..+.+++++++.+|||||||.. +..++.... ...+.+++++.|+++++.|+++++.+..+. .+.
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 102 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVV 102 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEE
Confidence 45789999999999999999999999999943 333333322 123568999999999999999998776542 222
Q ss_pred ceEeEeeec--ccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009827 79 EEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 79 ~~vg~~~~~--~~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~ 155 (524)
...|..... ......+.+|+++||+.+.+.+.... .+.+++++|+||+|. ..+.++ ...+..++...+.+.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~-~~~~~~i~~~~~~~~~~i~ 180 (207)
T 2gxq_A 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGF-EEEVEALLSATPPSRQTLL 180 (207)
T ss_dssp EECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTC-HHHHHHHHHTSCTTSEEEE
T ss_pred EEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccch-HHHHHHHHHhCCccCeEEE
Confidence 222211000 00112357899999999998886644 688999999999994 322222 2335556666666889999
Q ss_pred EeccCChH--H-HhhhcCCCCeee
Q 009827 156 TSATLDGE--K-VSKFFSNCPTLN 176 (524)
Q Consensus 156 ~SAT~~~~--~-~~~~~~~~~~~~ 176 (524)
||||++.+ . ...|++++..+.
T Consensus 181 ~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 181 FSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEecCHHHHHHHHHHcCCCeEEE
Confidence 99999764 2 445665544443
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.73 E-value=1.2e-17 Score=159.18 Aligned_cols=171 Identities=21% Similarity=0.189 Sum_probs=112.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc-C---------CCCCcEEEEcccchhHHHHHHHHHHHHhC
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-G---------YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt-~l~~~l~~~-~---------~~~~~~i~~~~P~r~la~~~~~~v~~~~~ 74 (524)
.+.+|.+++..+.+++++++++|||||||. ++..++... . ...+.+++++.|+++++.|+++++.+...
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999993 232233221 1 11235789999999999999998866543
Q ss_pred C---cccceEeEeeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh--
Q 009827 75 V---RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-- 146 (524)
Q Consensus 75 ~---~~~~~vg~~~~~~--~~~~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~-- 146 (524)
. .+....|...... .....+.+|+++||+.+.+.+.... .+.++++||+||+|. ..+.++. ..+..++..
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~-~~~~~i~~~~~ 203 (253)
T 1wrb_A 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR-MLDMGFE-PQIRKIIEESN 203 (253)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH-HHHTTCH-HHHHHHHHSSC
T ss_pred cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH-HHhCchH-HHHHHHHhhcc
Confidence 2 2222222110000 1112457899999999999886655 688999999999994 3333222 224455542
Q ss_pred ccc--CcEEEEEeccCChH--H-HhhhcCCCCeeecC
Q 009827 147 RAS--KLKILITSATLDGE--K-VSKFFSNCPTLNVP 178 (524)
Q Consensus 147 ~~~--~~~ii~~SAT~~~~--~-~~~~~~~~~~~~i~ 178 (524)
.+. +.++++||||++.+ . ...++.++..+.+.
T Consensus 204 ~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp CCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 222 67899999999764 2 44566554444443
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=152.18 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC-----CCCCcEEEEcccchhHHHH-HHHHHHHHhCC-
Q 009827 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-----YTKSGIIGVTQPRRVAAVS-VARRVAQELGV- 75 (524)
Q Consensus 3 ~lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~-----~~~~~~i~~~~P~r~la~~-~~~~v~~~~~~- 75 (524)
.++.+++|.++++.+.+++++++.+|||+|||......+.... ...+.+++++.|++.++.| +.+.+.+....
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 110 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 110 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 4678999999999999999999999999999954444433221 1235678899999999999 55556554432
Q ss_pred -cccceEeEeeeccc--ccCcccceeecchHHHHHHHHhC-------CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009827 76 -RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 76 -~~~~~vg~~~~~~~--~~~~~~~I~~~T~g~l~~~l~~~-------~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~ 145 (524)
.+....|....... ....+.+|+++||+.+.+.+... ..+.++++||+||+|+ ..+.++...++..++.
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHYLM 189 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHHH
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh-hccCCcHHHHHHHHHH
Confidence 32222221110000 11135789999999999888654 3578899999999994 4444444444443333
Q ss_pred hc-------------ccCcEEEEEecc
Q 009827 146 LR-------------ASKLKILITSAT 159 (524)
Q Consensus 146 ~~-------------~~~~~ii~~SAT 159 (524)
.. ..+.++|+||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 22 037899999998
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.69 E-value=1.1e-16 Score=168.84 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEE-
Q 009827 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV- 278 (524)
Q Consensus 200 ~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlv- 278 (524)
....+..+.. ..+|.+|||+||....+.+++.+.. ..+ ..++.. .++.++++.|++|. .|++
T Consensus 372 ~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~------------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~~ 434 (540)
T 2vl7_A 372 YSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG------------IPV-IEENKK--TRHEEVLELMKTGK-YLVML 434 (540)
T ss_dssp HHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT------------SCE-EESTTT--CCHHHHHHHHHTSC-CEEEE
T ss_pred HHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc------------Cce-EecCCC--CcHHHHHHHHhcCC-eEEEE
Confidence 3333444433 4568999999999999998876642 112 234443 45667778887654 5666
Q ss_pred -ecCccccccCCCC----eeEEEeCCcccceeecCC-------------CCccccceeeecHHhHHhhccccCCC--CCC
Q 009827 279 -STNIAETSLTVDG----VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRT--RPG 338 (524)
Q Consensus 279 -aT~i~e~gidip~----v~~VId~g~~k~~~~~~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~--~~G 338 (524)
+|+.+..|||+|+ +++||..|+|....-|+. .++.... .+.......|-+||+-|. ..|
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g 513 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYV 513 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCC
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccE
Confidence 8999999999998 899999999965443321 1111110 112256678999999997 456
Q ss_pred eEEEe
Q 009827 339 KCYRL 343 (524)
Q Consensus 339 ~~~~l 343 (524)
..+.+
T Consensus 514 ~v~ll 518 (540)
T 2vl7_A 514 KIYLC 518 (540)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.65 E-value=3e-15 Score=159.35 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=80.2
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH---HHhCCcccceE
Q 009827 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEV 81 (524)
Q Consensus 7 ~~~~~~i~~~i~~~~~~ii~apTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~---~~~~~~~~~~v 81 (524)
+..|...+..+.+|+ +..+.||+||| ..+|.++... .+..+.++.|++.||.|.++.+. +.+|..++..+
T Consensus 81 t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 81 FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQ 155 (997)
T ss_dssp CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 455666666677887 88999999999 3444433332 24568889999999999888764 44566655555
Q ss_pred eEeeecccccCcccceeecchHHH-HHHHHhC-------CCCC---CCceEEEeCCCc
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLS---PYSVIILDEAHE 128 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l-~~~l~~~-------~~l~---~~~~vIiDE~H~ 128 (524)
|............++|+|+|||.+ ...+..+ ..++ ++.++|+||+|.
T Consensus 156 Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 156 HASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred CCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 422111111223579999999999 6666544 2466 899999999985
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.60 E-value=7.1e-16 Score=149.40 Aligned_cols=150 Identities=11% Similarity=0.004 Sum_probs=102.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~ 83 (524)
+..+.+|.+.+..+..++..++++|||+|||.++..++........++++++.|+++++.|+.+++.+.... ....++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~-~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLF-SHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSC-CGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhccc-ccceEEE
Confidence 467888999999888788889999999999955444443322223458999999999999999999765432 2222221
Q ss_pred eeecccc---cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 84 AIRFEDR---TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 84 ~~~~~~~---~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
....... .....+|+++|++.+.+.. ...+.++++||+||+|. .. .. .+..++.......+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~-~~-~~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHL-AT-GK----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGG-CC-HH----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCcc-CC-cc----cHHHHHHHhhcCCeEEEEeCCC
Confidence 1111111 1156889999998775431 12567889999999994 33 22 3445555554478999999999
Q ss_pred Ch
Q 009827 161 DG 162 (524)
Q Consensus 161 ~~ 162 (524)
+.
T Consensus 263 ~~ 264 (282)
T 1rif_A 263 RD 264 (282)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.57 E-value=1.4e-14 Score=136.16 Aligned_cols=138 Identities=19% Similarity=0.177 Sum_probs=100.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCc-ccceEe
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~-~~~~vg 82 (524)
+..+.+|.+.+..+.+++.++++||||+|||.++..++... +..++++.|++.++.|+.+.+.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 45688999999999999999999999999997666555543 45788899999999999988876 6544 322222
Q ss_pred EeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh
Q 009827 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (524)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~ 162 (524)
......+|+++|++.+.+.... ...++++|||||+|. ..+.. .+.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~-l~~~~-----~~~i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAES-----YVQIAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSC-CCTTT-----HHHHHHTCC-CSEEEEEEESCC-
T ss_pred -------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCcc-CCChH-----HHHHHHhcc-CCEEEEEecCCCC
Confidence 1223578999999988765532 235699999999994 33332 233444454 6789999999964
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.50 E-value=3.2e-12 Score=135.31 Aligned_cols=312 Identities=16% Similarity=0.123 Sum_probs=180.5
Q ss_pred CCchHHHHHHHH----HhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh---C
Q 009827 4 LPILQYEETIVE----TVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (524)
Q Consensus 4 lpi~~~~~~i~~----~i~~~~~~ii~apTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~---~ 74 (524)
+..+++|.++++ ++..++++++.+|||+||| +++|.+. .+.+++++.|++.++.|+.+.+.... +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 355777877665 5568999999999999999 4444433 35689999999999999987664321 2
Q ss_pred CcccceEeEe---ee-----------------cc---------------------------------cccCcccceeecc
Q 009827 75 VRLGEEVGYA---IR-----------------FE---------------------------------DRTSERTLIKYLT 101 (524)
Q Consensus 75 ~~~~~~vg~~---~~-----------------~~---------------------------------~~~~~~~~I~~~T 101 (524)
.+.....|-. .. +. ......++|+++|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 2222111200 00 00 0001357999999
Q ss_pred hHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCh----------------------------------------------
Q 009827 102 DGVLLREILSNP--DLSPYSVIILDEAHERSLNT---------------------------------------------- 133 (524)
Q Consensus 102 ~g~l~~~l~~~~--~l~~~~~vIiDE~H~r~~~~---------------------------------------------- 133 (524)
++.|........ ...+..++||||||. ..+.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHn-l~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHN-LDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGG-GGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccc-hHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999988764443 335778999999995 2110
Q ss_pred -----------HHHHHH----------------------------HHHHHh------------------------hcccC
Q 009827 134 -----------DILLGL----------------------------VKRLVN------------------------LRASK 150 (524)
Q Consensus 134 -----------~~~~~~----------------------------l~~l~~------------------------~~~~~ 150 (524)
+.+..+ +..+.. .....
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 000000 000100 00112
Q ss_pred -cEEEEEeccCCh-HHHhhhcCCC-Cee------ecCCcccc--eeEEecCCC-------CcchHHHHHHHHHHHHhcCC
Q 009827 151 -LKILITSATLDG-EKVSKFFSNC-PTL------NVPGKLYP--VEILHSKER-------PTSYLESALKTAIDIHVREP 212 (524)
Q Consensus 151 -~~ii~~SAT~~~-~~~~~~~~~~-~~~------~i~~~~~~--v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 212 (524)
..+|++|||+.+ +.+.+.+|-. +.. .++ .+++ ..+...... ..++.....+.+..+.. ..
T Consensus 315 ~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~-spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~-~~ 392 (551)
T 3crv_A 315 ELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ-KRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF-QA 392 (551)
T ss_dssp TCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT-SCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred CceEEEEeeCCCcHHHHHHHhCCCCccccccceeecC-CcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH-hC
Confidence 589999999965 4466666543 221 111 1111 111111111 12344444555555443 34
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec--CccccccCCC
Q 009827 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST--NIAETSLTVD 290 (524)
Q Consensus 213 ~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT--~i~e~gidip 290 (524)
+|.+|||+||....+.+++. .+..++.-..+++.++..+.++ .++ .-|+++| ..+..|||+|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~-------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR-------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT-------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCE
T ss_pred CCCEEEEecCHHHHHHHHHh-------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceeccccccc
Confidence 67999999999999988851 1333433334566666555554 223 3799998 6899999999
Q ss_pred -----CeeEEEeCCcccceeecCC-----------CCcccc---ceeeecHHhHHhhccccCCCCC--CeEEE
Q 009827 291 -----GVVYVIDCGYVKQRQYNPS-----------SGMYSL---DVVQISKVQANQRVGRAGRTRP--GKCYR 342 (524)
Q Consensus 291 -----~v~~VId~g~~k~~~~~~~-----------~~~~~l---~~~~~s~~~~~QR~GRaGR~~~--G~~~~ 342 (524)
..+.||-.|+|-... ||. .|-... ...| ......|=+||+=|... |..+.
T Consensus 457 d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~l 527 (551)
T 3crv_A 457 NNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWL 527 (551)
T ss_dssp ETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEE
T ss_pred ccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEE
Confidence 378899889887554 432 121111 1223 45567799999999843 44443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.39 E-value=2e-13 Score=130.59 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=85.4
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC-ceE-EEEecCccccccCC
Q 009827 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTV 289 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~-vlvaT~i~e~gidi 289 (524)
.+.++|||+.....+..+...|.... ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH---------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc
Confidence 46799999999999999999998742 55677799999999999999999988 666 78999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCchhhhh
Q 009827 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 351 (524)
+++++||+++.|. +.+.+.||.||++|. ++-.+|+++++...+.
T Consensus 182 ~~a~~VI~~d~~w------------------np~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 182 TSANRVIHFDRWW------------------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TTCSEEEECSCCS------------------CTTTC--------------CCEEEEEEETTSHHH
T ss_pred ccCCEEEEECCCC------------------ChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999977643 445677999999997 3456788888776654
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.11 E-value=4.5e-10 Score=119.89 Aligned_cols=174 Identities=15% Similarity=0.176 Sum_probs=95.3
Q ss_pred EEEEEeccCCh-HHHhhhcCCC-CeeecCCcccc---eeEEecCCC-------CcchHHHHHHHHHHHHhcCCCCCEEEe
Q 009827 152 KILITSATLDG-EKVSKFFSNC-PTLNVPGKLYP---VEILHSKER-------PTSYLESALKTAIDIHVREPEGDVLIF 219 (524)
Q Consensus 152 ~ii~~SAT~~~-~~~~~~~~~~-~~~~i~~~~~~---v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~iLVF 219 (524)
.+|++|||+.+ +.+.+.+|-. ..+.++. +++ ..+.+.... ...+.....+.+..+... .+|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~~s-pf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKIGE-IFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEECCC-CSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeecCC-CCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 46899999954 4555555532 2222221 111 111111111 122334444444444433 36789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecC--ccccccCCCC--eeEE
Q 009827 220 MTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN--IAETSLTVDG--VVYV 295 (524)
Q Consensus 220 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~--i~e~gidip~--v~~V 295 (524)
+||....+.+++.+. . .+.. ...+++..++..+++.|+ +.-.|+++|. .+..|||+|+ .+.|
T Consensus 455 F~Sy~~l~~v~~~l~-~---------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-F---------EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp ESCHHHHHHHTSSCC-S---------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEE
T ss_pred eCCHHHHHHHHHHHH-h---------cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEE
Confidence 999999998887764 1 1222 445566667888888888 7888999974 8999999987 6788
Q ss_pred EeCCcccceeecCC-------------CCccccceeeecHHhHHhhccccCCCC--CCeEEEe
Q 009827 296 IDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRTR--PGKCYRL 343 (524)
Q Consensus 296 Id~g~~k~~~~~~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~~--~G~~~~l 343 (524)
|-.|+|-... ||. .++..-...| ......|-+||+=|.. .|..+.+
T Consensus 521 iI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 521 ILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp EESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 8888885432 221 1111001112 3455679999999973 4555443
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.37 E-value=9.7e-07 Score=94.06 Aligned_cols=141 Identities=16% Similarity=0.233 Sum_probs=76.9
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CCCCcEEEEcccchhHHHHHHHHHHH---HhCCcccceE
Q 009827 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (524)
Q Consensus 8 ~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~---~~~~~~i~~~~P~r~la~~~~~~v~~---~~~~~~~~~v 81 (524)
..|++.+..+..++++++.|++|+||||.+..++.... ...+.+++++.|+..++.++.+.+.. .++......
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~- 230 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK- 230 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-
Confidence 34666666677899999999999999977655543221 12345889999999999888776543 222211000
Q ss_pred eEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
.... .....-.+++-.+++.. ..........+++++||||++ +++... +..++...+.+.++|++.-.
T Consensus 231 -~~~~--~~~~Tih~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAs--ml~~~~----~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 -KRIP--EDASTLHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEAS--MIDLPM----MSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp -CSCS--CCCBTTTSCC------------CTTSCCSCSEEEECSGG--GCBHHH----HHHHHHTCCTTCEEEEEECT
T ss_pred -hccc--hhhhhhHhhhccCCCch-HHHhccCCCCCCCEEEEechh--hCCHHH----HHHHHHhCCCCCEEEEEcch
Confidence 0000 00000011222223221 111111122378999999999 455433 34445555657888887544
No 96
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.26 E-value=4.5e-06 Score=77.08 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=46.3
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|+.
T Consensus 138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 138 PYELSGGEQQRVAIARALANEPILLFADEPT-GNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3447899999999999999999999999998 7888887666555554443334556666554
No 97
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.23 E-value=9.8e-07 Score=84.01 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=81.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc---hhHHHHHHHHHH---HH-----hCCcccceEeEe-
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR---RVAAVSVARRVA---QE-----LGVRLGEEVGYA- 84 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~---r~la~~~~~~v~---~~-----~~~~~~~~vg~~- 84 (524)
+.+|+.+.|+||+||||||++..+........|...+--.+. .....+..+.++ +. +...+.+.+.+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHH
Confidence 568999999999999999999998877655433322222221 000001111000 00 000000000000
Q ss_pred ----eec--------------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009827 85 ----IRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 85 ----~~~--------------~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~ 146 (524)
... .-....+..+.-.+.|+.++..+...++.+.+++|+||+- ..+|......+++.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt-s~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 111 VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT-AGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHH
Confidence 000 0000012234447899999999988899999999999998 688887766655544443
Q ss_pred c-ccCcEEEEEeccCC
Q 009827 147 R-ASKLKILITSATLD 161 (524)
Q Consensus 147 ~-~~~~~ii~~SAT~~ 161 (524)
. ..+..+|+.|.-++
T Consensus 190 ~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 190 QKELGITIIIATHDID 205 (275)
T ss_dssp HHHHCCEEEEEESCCS
T ss_pred HhhCCCEEEEEecCHH
Confidence 3 22567788777764
No 98
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.23 E-value=4.5e-06 Score=77.66 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=46.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~-~~~ii~~SAT~ 160 (524)
+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+...... +..+|+.|+-+
T Consensus 143 ~~~LSgGq~QRv~iAral~~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 143 PNQLSGGQQQRVAIARALANNPPIILADQPT-WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4447899999999999999999999999998 688887766655554443322 56677766654
No 99
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.21 E-value=5.9e-07 Score=88.49 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=46.5
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccCC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~~ 161 (524)
-.+.|+.+|..+...++.+.+++++||+- ..+|......++..+..... .+..+|+.|+-++
T Consensus 163 ~LSGGqkQRVaIArAL~~~P~lLLlDEPT-s~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 163 NLSGGQKQRVAIARALASNPKVLLCDQAT-SALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp TSCHHHHHHHHHHHHTTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 47899999999999999999999999998 68888776555544443322 2567777776553
No 100
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.19 E-value=1e-06 Score=83.09 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=48.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (524)
+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|. +.+.+..+
T Consensus 144 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tiiivtH--d~~~~~~~ 212 (256)
T 1vpl_A 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPT-SGLDVLNAREVRKILKQASQEGLTILVSSH--NMLEVEFL 212 (256)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEEEC--CHHHHTTT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHH
Confidence 4457899999999988899999999999998 788888766655555444333455666555 43444444
No 101
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.16 E-value=1.3e-06 Score=79.90 Aligned_cols=141 Identities=22% Similarity=0.253 Sum_probs=78.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--------------EEcc-cch---hHHHHHHHHHHHHhCCcc-
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII--------------GVTQ-PRR---VAAVSVARRVAQELGVRL- 77 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i--------------~~~~-P~r---~la~~~~~~v~~~~~~~~- 77 (524)
+.+|+.+.|.||+||||||++..+........|... ++.+ |.- ..+.+.........+...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 111 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 111 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence 568999999999999999999998876654322211 1111 100 011111111111111000
Q ss_pred cceEeE---eeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009827 78 GEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 78 ~~~vg~---~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii 154 (524)
...+-. ....+.. +..+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|
T Consensus 112 ~~~~~~~l~~~gl~~~---~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV-VAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp HHHHHHHHHHTTCCCT---TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT-TTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHcCCCcC---CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 000000 0001111 2334457899999999999999999999999998 67777655554444433322245577
Q ss_pred EEeccCC
Q 009827 155 ITSATLD 161 (524)
Q Consensus 155 ~~SAT~~ 161 (524)
+.|..++
T Consensus 188 ivtHd~~ 194 (214)
T 1sgw_A 188 ISSREEL 194 (214)
T ss_dssp EEESSCC
T ss_pred EEeCCHH
Confidence 7676653
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.11 E-value=4.6e-06 Score=87.98 Aligned_cols=125 Identities=18% Similarity=0.307 Sum_probs=76.2
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEe
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~ 84 (524)
.+...|.+++..+..++.++|.||.|+||||++..++..... .+..++++.|+..++..+.+.. +.... ++.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e~~----~~~a~-Tih-- 260 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGEVT----GRTAS-TVH-- 260 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHH----TSCEE-EHH--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHhhh----cccHH-HHH--
Confidence 456788888888889999999999999999887776654432 3567888999988877665533 21100 000
Q ss_pred eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 85 IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 85 ~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
++-.... . .+. .......++++|||||++ +++...+ ..++...+.+.++|++-
T Consensus 261 -~ll~~~~--~--~~~---------~~~~~~~~~dvlIIDEas--ml~~~~~----~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 261 -RLLGYGP--Q--GFR---------HNHLEPAPYDLLIVDEVS--MMGDALM----LSLLAAVPPGARVLLVG 313 (574)
T ss_dssp -HHTTEET--T--EES---------CSSSSCCSCSEEEECCGG--GCCHHHH----HHHHTTSCTTCEEEEEE
T ss_pred -HHHcCCc--c--hhh---------hhhcccccCCEEEEcCcc--CCCHHHH----HHHHHhCcCCCEEEEEe
Confidence 0000000 0 000 011133468999999999 4555433 34444455466777754
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.09 E-value=8.5e-06 Score=72.41 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.++.+++.||+|+||||++..++....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988877654
No 104
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.08 E-value=1.8e-06 Score=80.97 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+..... +..+|+.|.-++
T Consensus 144 ~~LSgGq~qRv~iAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~ 205 (247)
T 2ff7_A 144 AGLSGGQRQRIAIARALVNNPKILIFDEAT-SALDYESEHVIMRNMHKICK-GRTVIIIAHRLS 205 (247)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCC-SCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHH
Confidence 357899999999988899999999999998 78888876665555544432 566666666543
No 105
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.07 E-value=1.9e-05 Score=74.18 Aligned_cols=148 Identities=21% Similarity=0.205 Sum_probs=82.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----E-EEcccchhH-HHHHHHHHHHHh----CCc--ccc----
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----I-GVTQPRRVA-AVSVARRVAQEL----GVR--LGE---- 79 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~-----i-~~~~P~r~l-a~~~~~~v~~~~----~~~--~~~---- 79 (524)
+.+|+.+.|.||+||||||++..+........|.. + ++-|..... ...+.+.+.-.. +.. ...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 56899999999999999999999888765543321 2 222211000 001111111000 000 000
Q ss_pred eEeE---eeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEE
Q 009827 80 EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILI 155 (524)
Q Consensus 80 ~vg~---~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~-~~~ii~ 155 (524)
.+.. ....... .+..+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+...... +..+|+
T Consensus 108 ~~~~~l~~~~l~~~--~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 108 VAMQALDYLNLTHL--AKREFTSLSGGQRQLILIARAIASECKLILLDEPT-SALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHTTCGGG--TTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS-TTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHcCChHH--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0000 0000000 12234458899999999888899999999999998 688888776655555444332 455666
Q ss_pred EeccCChHHHhhhc
Q 009827 156 TSATLDGEKVSKFF 169 (524)
Q Consensus 156 ~SAT~~~~~~~~~~ 169 (524)
.|+- .+.+..+.
T Consensus 185 vtHd--~~~~~~~~ 196 (253)
T 2nq2_C 185 TTHQ--PNQVVAIA 196 (253)
T ss_dssp EESC--HHHHHHHC
T ss_pred EecC--HHHHHHhC
Confidence 5554 34444443
No 106
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.05 E-value=1.1e-06 Score=83.12 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=47.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|+-++
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPI-AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 4447889999998888889999999999998 788888766655555444333566777777654
No 107
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.05 E-value=2.4e-05 Score=73.92 Aligned_cols=70 Identities=10% Similarity=0.172 Sum_probs=49.3
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (524)
+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|. +.+.+..+.
T Consensus 157 ~~~LSgGqkQRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~vtH--d~~~~~~~~ 226 (263)
T 2olj_A 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPT-SALDPEMVGEVLSVMKQLANEGMTMVVVTH--EMGFAREVG 226 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCEEEEECS--CHHHHHHHC
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHhC
Confidence 3447899999999988899999999999998 788888766655555444333455666554 444444443
No 108
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.02 E-value=3.4e-06 Score=79.98 Aligned_cols=150 Identities=18% Similarity=0.120 Sum_probs=81.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---HHhCC----cccceEeEeee--
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QELGV----RLGEEVGYAIR-- 86 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~v~---~~~~~----~~~~~vg~~~~-- 86 (524)
+.+|+.+.|+||+||||||++..+........|...+--.+.... ..+..+.++ +.... .+.+.+.+...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 568999999999999999999998887665544333322221110 111111110 00000 00000000000
Q ss_pred ---------------cccccCcccceeecchHHHHHHHHhCCCCC------CCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009827 87 ---------------FEDRTSERTLIKYLTDGVLLREILSNPDLS------PYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 87 ---------------~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~------~~~~vIiDE~H~r~~~~~~~~~~l~~l~~ 145 (524)
+.-....+..+--.+.|+.++..+...++. +.+++++||+- ..+|......+++.+..
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt-s~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT-SALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC-SSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 000000122333478999999888887777 99999999998 68888776665554444
Q ss_pred hccc-CcEEEEEeccCChHHHhhhc
Q 009827 146 LRAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 146 ~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (524)
.... +..+|+.|+ +.+.+..+.
T Consensus 193 l~~~~~~tvi~vtH--dl~~~~~~~ 215 (266)
T 4g1u_C 193 LTRQEPLAVCCVLH--DLNLAALYA 215 (266)
T ss_dssp HHHHSSEEEEEECS--CHHHHHHHC
T ss_pred HHHcCCCEEEEEEc--CHHHHHHhC
Confidence 3322 345556555 444444443
No 109
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.02 E-value=1.3e-06 Score=84.36 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=43.8
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
-.+.|..++..+.+.++.+.+++|+||+- ..+|......+.+.+..... +..+|+.|.-
T Consensus 190 ~LSGGqrQRvaiARAL~~~p~iLlLDEPt-s~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~ 248 (306)
T 3nh6_A 190 KLSGGEKQRVAIARTILKAPGIILLDEAT-SALDTSNERAIQASLAKVCA-NRTTIVVAHR 248 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCS-SCCCHHHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence 47889999999888889999999999998 68888776665555544443 5555554443
No 110
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.00 E-value=2e-05 Score=78.13 Aligned_cols=137 Identities=21% Similarity=0.269 Sum_probs=78.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-----------------EEcccchh-HHHHHHHHHH---HHhCC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----------------GVTQPRRV-AAVSVARRVA---QELGV 75 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i-----------------~~~~P~r~-la~~~~~~v~---~~~~~ 75 (524)
+.+|+.+.+.||+||||||++..+........|... ++-|-... ....+.+.+. +..+.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~ 105 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC
Confidence 568999999999999999999999887654432211 11111000 0001111110 00010
Q ss_pred c----------ccceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009827 76 R----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 76 ~----------~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~ 145 (524)
. ....+| .... .+...--.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+
T Consensus 106 ~~~~~~~~v~~~l~~~~----L~~~--~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQ----LAHL--LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISR 178 (381)
T ss_dssp CHHHHHHHHHHHHHHTT----CGGG--TTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcC----Cchh--hcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHH
Confidence 0 000001 0000 12223347899999999988889999999999998 68888766555444444
Q ss_pred hccc-CcEEEEEeccC
Q 009827 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SAT~ 160 (524)
...+ +..+|+.|.-+
T Consensus 179 l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 179 LHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHCCEEEEECSCH
T ss_pred HHHhCCCEEEEEECCH
Confidence 3321 56677765543
No 111
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.00 E-value=4.5e-06 Score=79.41 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=46.4
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
+.-.+.|+.++..+...++.+.+++++||+- ..+|......++..+..... .+..+|+.|.-+
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNAT-SALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 3347889999999988899999999999998 78888887776555554432 145566655543
No 112
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.00 E-value=3.3e-06 Score=78.91 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=46.4
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|+.+
T Consensus 137 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 137 GGTLSGGEQQMLAIGRALMSRPKLLMMDEPS-LGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp SSSSCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 4447889999988888889999999999998 78888876665555544432355677766554
No 113
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.99 E-value=4e-05 Score=75.35 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=47.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCChHHHhhh
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (524)
.--.+.|+.++..+...++.+.+++++||.- ..+|......+...+...... +..+|+.|. +.+....+
T Consensus 143 ~~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH--d~~~a~~~ 212 (355)
T 1z47_A 143 PHELSGGQQQRVALARALAPRPQVLLFDEPF-AAIDTQIRRELRTFVRQVHDEMGVTSVFVTH--DQEEALEV 212 (355)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-CCSSHHHHHHHHHHHHHHHHHHTCEEEEECS--CHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEECC--CHHHHHHh
Confidence 3347899999999999999999999999998 688887766654444433221 455666554 44444444
No 114
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.97 E-value=4.2e-05 Score=75.20 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
..-.+.|+.+|..+...++.+.+++++||.- ..+|......+...+.+... .+..+|+.|.-+
T Consensus 136 ~~~LSGGq~QRValArAL~~~P~lLLLDEPt-s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 136 PHELSGGQQQRAALARALAPDPELILLDEPF-SALDEQLRRQIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3447899999999999999999999999998 68888776665544443322 256677765544
No 115
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.97 E-value=1e-05 Score=83.24 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=45.2
Q ss_pred chHHHHHHHHHhc----cCC-EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH
Q 009827 6 ILQYEETIVETVE----QNP-VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (524)
Q Consensus 6 i~~~~~~i~~~i~----~~~-~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v 69 (524)
+...|++++..+. +++ .++|.|+.|||||+++..++......+...++++.|+..++..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 3456777766543 233 999999999999988777665543333346888999988887776554
No 116
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.97 E-value=2.9e-05 Score=73.62 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=48.1
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
+.-.+.|+.++..+...++.+.+++++||+- ..+|......++..+......+..+|+.|+.++
T Consensus 136 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPL-VGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3347899999999888899999999999998 788888776665555544333556777766653
No 117
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.94 E-value=2.4e-05 Score=74.64 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=45.5
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEE--EEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI--LITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~i--i~~SAT~ 160 (524)
+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+ |+.|.-+
T Consensus 159 ~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~ 223 (279)
T 2ihy_A 159 IGYLSTGEKQRVMIARALMGQPQVLILDEPA-AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223 (279)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH
Confidence 4447899999999888889999999999998 6888877666555444433224456 6666554
No 118
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.92 E-value=9.3e-06 Score=75.22 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=78.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----E-EEcccchhHHHHHHHHHH--------------HHhCCc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----I-GVTQPRRVAAVSVARRVA--------------QELGVR 76 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~-----i-~~~~P~r~la~~~~~~v~--------------~~~~~~ 76 (524)
+.+|+.+.|+||+||||||++..++....+..|.. + ++.|........+.+.+. +..+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 46899999999999999999999888765543321 1 222211000001111111 111100
Q ss_pred ccceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009827 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 77 ~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~ 156 (524)
.... ..........+....-.+.|+.++..+...++.+.+++++||+- ..+|......+.+.++.....+..+|+.
T Consensus 111 --~~~~-~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~tvi~v 186 (229)
T 2pze_A 111 --EDIS-KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILV 186 (229)
T ss_dssp --HHHT-TSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT-TTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred --HHHH-hCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 0000 00000000011123458899999999988899999999999998 7888887777555433222224556665
Q ss_pred eccC
Q 009827 157 SATL 160 (524)
Q Consensus 157 SAT~ 160 (524)
|+.+
T Consensus 187 tH~~ 190 (229)
T 2pze_A 187 TSKM 190 (229)
T ss_dssp CCCH
T ss_pred cCCh
Confidence 5543
No 119
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.91 E-value=2e-06 Score=81.47 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=47.8
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (524)
--.+.|+.++..+...++.+.+++++||+- ..+|......++..+......+..+|+.|+. .+.+..+
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd--~~~~~~~ 219 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTHE--MGFARHV 219 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCCEEEECSC--HHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHh
Confidence 347889999988888889999999999998 7888887666555554433324556666554 3444444
No 120
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.89 E-value=4.8e-05 Score=75.08 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=45.4
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
--.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+... .+..+|+.|+-+
T Consensus 132 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPL-SNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESGG-GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 347899999999999999999999999997 67888776665444443322 145667766543
No 121
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.89 E-value=4.9e-05 Score=74.95 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=45.4
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
--.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+... .+..+|+.|+.+
T Consensus 132 ~~LSgGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 132 TQLSGGQQQRVALARALVKQPKVLLFDEPL-SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 347899999999999999999999999998 68888776665444443322 145666666543
No 122
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.89 E-value=4.5e-06 Score=78.28 Aligned_cols=148 Identities=23% Similarity=0.222 Sum_probs=81.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchh-HHHHHHHHHH---HHhCC----cccceEeEee-e
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRV-AAVSVARRVA---QELGV----RLGEEVGYAI-R 86 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~-la~~~~~~v~---~~~~~----~~~~~vg~~~-~ 86 (524)
+.+|+.+.|.||+||||||++..+....... +.+.+ -.+... ...+..+.++ +.... .+.+.+.+.. .
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 5689999999999999999999988876655 44433 222111 0111111110 00000 0000000000 0
Q ss_pred c--cc-----------ccCcccceeecchHHHHHHHHhCCCCCCCc-------eEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009827 87 F--ED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYS-------VIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 87 ~--~~-----------~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~-------~vIiDE~H~r~~~~~~~~~~l~~l~~~ 146 (524)
. .. ....+..+.-.+.|+.++..+...++.+.+ ++++||+- ..+|......+++.+...
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt-s~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM-NSLDVAQQSALDKILSAL 179 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT-TTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc-ccCCHHHHHHHHHHHHHH
Confidence 0 00 000122334478888888888777778888 99999998 688888766655555444
Q ss_pred cccCcEEEEEeccCChHHHhhhc
Q 009827 147 RASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 147 ~~~~~~ii~~SAT~~~~~~~~~~ 169 (524)
...+..+|+.|+ +.+.+..+.
T Consensus 180 ~~~g~tviivtH--d~~~~~~~~ 200 (249)
T 2qi9_C 180 SQQGLAIVMSSH--DLNHTLRHA 200 (249)
T ss_dssp HHTTCEEEEECS--CHHHHHHHC
T ss_pred HhCCCEEEEEeC--CHHHHHHhC
Confidence 332455666554 444444443
No 123
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.89 E-value=3.8e-05 Score=81.45 Aligned_cols=142 Identities=23% Similarity=0.267 Sum_probs=80.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---HH---hCCcccceEeEee--ec
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QE---LGVRLGEEVGYAI--RF 87 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~v~---~~---~~~~~~~~vg~~~--~~ 87 (524)
+.+|+.+.++||+||||||++..++....+..|...+--.+.... ..+..++++ +. +...+.+.+.+.. ..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 445 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY 445 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCC
Confidence 468999999999999999999999887665544332222221110 000000000 00 0000000000000 00
Q ss_pred --------------cc---ccC------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009827 88 --------------ED---RTS------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 88 --------------~~---~~~------~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~ 144 (524)
++ ..+ -+.+..-.+.|+.+|..+.+..+.+.+++++||+- ..+|......+.+.+.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT-SALDTESERAIQAALD 524 (582)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 00 000 01122347899999999999999999999999998 6888887766555555
Q ss_pred hhcccCcEEEEEeccC
Q 009827 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (524)
.... +..+|+.|+-+
T Consensus 525 ~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 525 ELQK-NKTVLVIAHRL 539 (582)
T ss_pred HHcC-CCEEEEEecCH
Confidence 4443 56666666654
No 124
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.88 E-value=1.1e-05 Score=75.60 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=41.6
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+..... +..+|+.|+-+
T Consensus 137 ~~~LSgGq~qrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~ 198 (243)
T 1mv5_A 137 GVKISGGQRQRLAIARAFLRNPKILMLDEAT-ASLDSESESMVQKALDSLMK-GRTTLVIAHRL 198 (243)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCS-CSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCh
Confidence 3458899999998888888999999999987 56665543333333322222 55666666543
No 125
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.87 E-value=1.8e-06 Score=85.64 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=44.3
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~-~~~ii~~SAT~ 160 (524)
-.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+.... +..+|+.|+.+
T Consensus 141 ~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPL-SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 47888888888888899999999999998 688887766655444443221 45667766543
No 126
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.85 E-value=1e-05 Score=76.48 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=76.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-----------------c-ccchhHHHHHHHHHHH--Hh-CC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-----------------T-QPRRVAAVSVARRVAQ--EL-GV 75 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~-----------------~-~P~r~la~~~~~~v~~--~~-~~ 75 (524)
+. |+.+.|.||+||||||++..++... +.. +.+.+ + |.... ...+.+.+.- .. +.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~-G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~~~ 103 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYS-GNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEELKGL 103 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHHTCC
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC-cEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhhcch
Confidence 56 8999999999999999999988776 433 22221 1 11000 1111111110 00 00
Q ss_pred c------ccceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009827 76 R------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 76 ~------~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~ 149 (524)
. .-..+| ... ...+..+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+... .
T Consensus 104 ~~~~~~~~l~~~g----l~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~~-~- 175 (263)
T 2pjz_A 104 DRDLFLEMLKALK----LGE-EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF-ENVDAARRHVISRYIKEY-G- 175 (263)
T ss_dssp CHHHHHHHHHHTT----CCG-GGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT-TTCCHHHHHHHHHHHHHS-C-
T ss_pred HHHHHHHHHHHcC----CCh-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc-cccCHHHHHHHHHHHHHh-c-
Confidence 0 000001 110 0012234457899999999888889999999999998 788888877765555443 3
Q ss_pred CcEEEEEeccC
Q 009827 150 KLKILITSATL 160 (524)
Q Consensus 150 ~~~ii~~SAT~ 160 (524)
. .+|+.|+.+
T Consensus 176 ~-tviivtHd~ 185 (263)
T 2pjz_A 176 K-EGILVTHEL 185 (263)
T ss_dssp S-EEEEEESCG
T ss_pred C-cEEEEEcCH
Confidence 3 566666554
No 127
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.85 E-value=2.2e-05 Score=73.04 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=80.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----E-EEcccchhHHHHHHHHH--------------HHHhCCc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----I-GVTQPRRVAAVSVARRV--------------AQELGVR 76 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~-----i-~~~~P~r~la~~~~~~v--------------~~~~~~~ 76 (524)
+.+|+.+.|+||+||||||++..++....+..|.. + ++.|........+.+.+ .+..+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 107 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence 56899999999999999999998887654432221 1 22221110000111111 1111100
Q ss_pred ccceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH--hhcccCcEEE
Q 009827 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV--NLRASKLKIL 154 (524)
Q Consensus 77 ~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~--~~~~~~~~ii 154 (524)
..++. .........+..+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.+. .....+..+|
T Consensus 108 --~~~~~-~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~~~tvi 183 (237)
T 2cbz_A 108 --PDLEI-LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL-SAVDAHVGKHIFENVIGPKGMLKNKTRI 183 (237)
T ss_dssp --HHHTT-STTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHTTSTTSTTTTSEEE
T ss_pred --HHHHh-ccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 00000 0000000012234458899999999888889999999999998 7888887777665553 1112256677
Q ss_pred EEeccCC
Q 009827 155 ITSATLD 161 (524)
Q Consensus 155 ~~SAT~~ 161 (524)
+.|..++
T Consensus 184 ivtH~~~ 190 (237)
T 2cbz_A 184 LVTHSMS 190 (237)
T ss_dssp EECSCST
T ss_pred EEecChH
Confidence 7777654
No 128
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.85 E-value=3.2e-05 Score=72.06 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=45.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
+--.+.|+.++..+...++.+.+++++||+- ..+|......+++.+..... .+..+|+.|+.+
T Consensus 124 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 124 PARLSGGERQRVALARALVIQPRLLLLDEPL-SAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSSBEEESTT-SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3447899999999988899999999999998 78888776665554444322 145566666544
No 129
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.85 E-value=9.6e-05 Score=73.30 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=45.5
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
--.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+... .+..+|+.|+.+
T Consensus 138 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPL-SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTT-TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 347899999999988899999999999998 68888776665444443322 156677766544
No 130
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.85 E-value=3.1e-05 Score=76.06 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=79.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-c------cch-----------h-HHHHHHHHHH---HHhC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-Q------PRR-----------V-AAVSVARRVA---QELG 74 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~-~------P~r-----------~-la~~~~~~v~---~~~~ 74 (524)
+.+|+.+.+.||+||||||++..+........| .|.+- . |.+ . ....+.+.+. ...+
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 568999999999999999999999887655433 22221 0 000 0 0000111110 1111
Q ss_pred CcccceEeE---eeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cC
Q 009827 75 VRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SK 150 (524)
Q Consensus 75 ~~~~~~vg~---~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~ 150 (524)
......+.. ....+.. .+...--.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+... .+
T Consensus 102 ~~~~~~v~~~l~~~~L~~~--~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHL--LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL-SALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTT--TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS-TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCchH--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 000000000 0000000 12233447899999999999999999999999998 68888776665544444322 25
Q ss_pred cEEEEEeccC
Q 009827 151 LKILITSATL 160 (524)
Q Consensus 151 ~~ii~~SAT~ 160 (524)
..+|+.|+.+
T Consensus 179 ~tii~vTHd~ 188 (348)
T 3d31_A 179 LTVLHITHDQ 188 (348)
T ss_dssp CEEEEEESCH
T ss_pred CEEEEEeCCH
Confidence 6677766543
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.83 E-value=3.8e-05 Score=65.92 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.++.+++.||+|+|||+++..+.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999988877554
No 132
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.82 E-value=3.6e-06 Score=79.16 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=42.3
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|+-+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETD-SGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGG-GTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 7889999988888888899999999998 68888877776655554433355677766654
No 133
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.82 E-value=5.5e-05 Score=71.69 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.+.|+.++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|..+
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 7899999998888888999999999998 78898887776665554433345566655543
No 134
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.81 E-value=4.6e-05 Score=80.78 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=80.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HHhCCcccceEeEeeecc----
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRFE---- 88 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~v~---~~~~~~~~~~vg~~~~~~---- 88 (524)
+.+|+.+.++||+||||||++..++.......|...+--.+.+... .+..++++ +..... ..++...+.+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDA 444 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCC
Confidence 4689999999999999999999888776654443333333322211 11111110 000000 00000000000
Q ss_pred ------------------cccC------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009827 89 ------------------DRTS------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 89 ------------------~~~~------~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~ 144 (524)
...+ -+.+..-.+.|+.+|..+.+..+.+.+++|+||+- ..+|......+.+.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 523 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT-SSVDPITEKRILDGLK 523 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC-TTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 0000 01112337889999999998899999999999998 6888887776666555
Q ss_pred hhcccCcEEEEEeccC
Q 009827 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (524)
.... +..+|+.|+-+
T Consensus 524 ~~~~-~~tvi~itH~l 538 (587)
T 3qf4_A 524 RYTK-GCTTFIITQKI 538 (587)
T ss_dssp HHST-TCEEEEEESCH
T ss_pred HhCC-CCEEEEEecCh
Confidence 4443 66666666554
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.81 E-value=3.5e-05 Score=71.19 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~ 56 (524)
.+..|+.+++.||+||||||++..++......++..+++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 56788999999999999999998888655433344444443
No 136
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.77 E-value=9.4e-06 Score=76.72 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=45.8
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.-.+.|+.++..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~l~~-~~tviivtH~~ 214 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEAT-SSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRL 214 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCC-CTTCHHHHHHHHHHHHHHTT-TSEEEEECSSG
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 457899999998888888999999999998 78888876665555544433 55566666554
No 137
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.76 E-value=1.1e-05 Score=85.74 Aligned_cols=143 Identities=19% Similarity=0.218 Sum_probs=81.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HHhCC---cccceEeEeee-c-
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGV---RLGEEVGYAIR-F- 87 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~v~---~~~~~---~~~~~vg~~~~-~- 87 (524)
+.+|+.+.++||+||||||++..++....+..|...+--.+.+... .+..++++ +.... .+.+.+.+... .
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~ 457 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGAT 457 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCC
Confidence 5689999999999999999999888876655443333233322111 11111110 00000 00000000000 0
Q ss_pred c----------------cccCcc------cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009827 88 E----------------DRTSER------TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 88 ~----------------~~~~~~------~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~ 145 (524)
+ ...+.+ .+-.-.+.|+.+|..+.+..+.+.+++|+||+- ..+|......+.+.+..
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 458 DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT-SNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHH
Confidence 0 000000 001236889999999988899999999999998 68888776665555554
Q ss_pred hcccCcEEEEEeccCC
Q 009827 146 LRASKLKILITSATLD 161 (524)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (524)
... +..+|+.|+-++
T Consensus 537 ~~~-~~t~i~itH~l~ 551 (598)
T 3qf4_B 537 LME-GKTSIIIAHRLN 551 (598)
T ss_dssp HHT-TSEEEEESCCTT
T ss_pred HcC-CCEEEEEecCHH
Confidence 443 666777666654
No 138
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.75 E-value=1.5e-06 Score=85.74 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=44.6
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
--.+.|+.++..+...++.+.+++++||.- ..+|......+...+.+... .+..+|+.|+-+
T Consensus 139 ~~LSGGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 139 RELSGAQQQRVALARALVKDPSLLLLDEPF-SNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 347899999999999999999999999998 67887765554444433322 145677766543
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.73 E-value=0.00015 Score=66.50 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=64.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccce
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I 97 (524)
..|..+++.||+|+||||.+...+..... .+.++++.+|...-. .. ..+....|.. . ..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~r---~~-------~~i~srlG~~--~-------~~~ 69 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDTR---SI-------RNIQSRTGTS--L-------PSV 69 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCGG---GC-------SSCCCCCCCS--S-------CCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCch---HH-------HHHHHhcCCC--c-------ccc
Confidence 45778999999999999988888776643 244666776643210 00 0111111200 0 011
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SA 158 (524)
.+.+...+...+.....-.++++|||||++. +..+ ....+..+.. .+..+|+..-
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHH---TTCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHh---CCCeEEEEec
Confidence 2344555666555443345689999999993 4444 3333444433 2566666544
No 140
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00011 Score=77.77 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=46.8
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.+.-.+.|..++..+...++.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 218 ~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPS-SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc-cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34558899999998888888999999999998 67888776665555544444345566665544
No 141
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.69 E-value=3.2e-05 Score=74.12 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=77.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----E-EEcccchhHHHHHHHHHHHHhCCccc--------ceEe
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----I-GVTQPRRVAAVSVARRVAQELGVRLG--------EEVG 82 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~-----i-~~~~P~r~la~~~~~~v~~~~~~~~~--------~~vg 82 (524)
+.+|+.+.|.||+||||||++..++.......|.. + ++.|........+.+.+. +.... ...+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~---~~~~~~~~~~~~~~~~~ 137 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII---GVSYDEYRYRSVIKACQ 137 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHH---TTCCCHHHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhh---CcccchHHHHHHHHHhC
Confidence 45789999999999999999998887654432221 2 222211100001112221 10000 0000
Q ss_pred Eeeeccccc-----CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 83 YAIRFEDRT-----SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 83 ~~~~~~~~~-----~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
.....+... ..+..+.-.+.|+.++..+...++.+.+++++||+- ..+|......+++.++.....+..+|+.|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~ll~~~~~~~tviivt 216 (290)
T 2bbs_A 138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILVT 216 (290)
T ss_dssp CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 000000000 001123458999999999988899999999999998 78888877775554332222255566665
Q ss_pred ccC
Q 009827 158 ATL 160 (524)
Q Consensus 158 AT~ 160 (524)
+.+
T Consensus 217 Hd~ 219 (290)
T 2bbs_A 217 SKM 219 (290)
T ss_dssp CCH
T ss_pred cCH
Confidence 544
No 142
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.68 E-value=1.4e-05 Score=84.92 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=47.2
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.-.+.|+.+|..+.+..+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~ 540 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALDELQK-NRTSLVIAHRLS 540 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTT-SSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH
Confidence 347899999999888889999999999998 78888876665555554443 566777766553
No 143
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.66 E-value=1.3e-05 Score=70.54 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHH
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQ 39 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~ 39 (524)
+.+|+.++++||+||||||++..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 56899999999999999999985
No 144
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.64 E-value=0.00017 Score=69.51 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i 52 (524)
+.+.-.+..|+.++|.||+|+||||++..++.......+..+
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 445556889999999999999999999998887655444333
No 145
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.64 E-value=1.1e-05 Score=85.39 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=43.3
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
-.+.|+.+|..+.+..+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l 536 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEAT-SALDLESESIIQEALDVLSK-DRTTLIVAHRL 536 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHHHTT-TSEEEEECSSG
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 36889999999888889999999999998 67888765554444433333 55566655544
No 146
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.63 E-value=6.4e-05 Score=78.48 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE------EEEc-cc-c---hhHHHHHHHHHHHHhCCcc--cc-eEe
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI------IGVT-QP-R---RVAAVSVARRVAQELGVRL--GE-EVG 82 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~------i~~~-~P-~---r~la~~~~~~v~~~~~~~~--~~-~vg 82 (524)
+.+|+.+.|.||+||||||++..+........|.. +.+. +- . ...+.+. +........ .. .+.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~---l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQY---LENASKDALSTSSWFFE 367 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHH---HHHHCSSTTCTTSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHH---HHHhhhhccchhHHHHH
Confidence 46799999999999999999999988765544332 1111 10 0 1111221 111110000 00 000
Q ss_pred Eee-ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009827 83 YAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 83 ~~~-~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~-~~~~ii~~SAT~ 160 (524)
... .+.-....+..+--.+.|..++..+...++.+.+++|+||+- ..+|......+++.+..... .+.-+|+.|.-+
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS-SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 000 000001123345568999999999998899999999999998 78888876665554444322 245566666544
No 147
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.62 E-value=0.00027 Score=71.24 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE-EcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCccccee
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~-~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~ 98 (524)
+.+++++|++|+||||++..+.......+....+ -..+.|..+.++...+++..+..+.. ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~----------~~~~----- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG----------EPNN----- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC----------CTTC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceee----------cccc-----
Confidence 4578999999999998887777655433333333 33456666666666666555533210 0000
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCC--CChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERS--LNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~--~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
..|..+...........+++++|||++.... .+.....+ +..+.....++..+++++|+.
T Consensus 162 -~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~e-l~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 -QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE-MKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp -SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHH-HHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHH-HHHHHHhhCCcceEEEEeCcc
Confidence 1233333333333344689999999998433 45555444 444444443366777888886
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.62 E-value=0.0002 Score=70.08 Aligned_cols=115 Identities=20% Similarity=0.173 Sum_probs=66.1
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCc-ccceEeEeeecccc
Q 009827 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVGYAIRFEDR 90 (524)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~-~~~~vg~~~~~~~~ 90 (524)
.+--.+..|+.++|+|||||||||++..++...... .+.+.+--+. .. ... ....+++..
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~-e~------------~~~~~~~~i~~~~----- 223 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTE-EI------------VFKHHKNYTQLFF----- 223 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSC-CC------------CCSSCSSEEEEEC-----
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCee-cc------------ccccchhEEEEEe-----
Confidence 344456789999999999999999999888776654 3444433221 10 000 112222211
Q ss_pred cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChH
Q 009827 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (524)
Q Consensus 91 ~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~ 163 (524)
-.|.-.+..+...+..+.+++++||+- + .. ....++.+. ....-++..++..+..
T Consensus 224 ----------ggg~~~r~~la~aL~~~p~ilildE~~--~--~e-~~~~l~~~~---~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 224 ----------GGNITSADCLKSCLRMRPDRIILGELR--S--SE-AYDFYNVLC---SGHKGTLTTLHAGSSE 278 (330)
T ss_dssp ----------BTTBCHHHHHHHHTTSCCSEEEECCCC--S--TH-HHHHHHHHH---TTCCCEEEEEECSSHH
T ss_pred ----------CCChhHHHHHHHHhhhCCCEEEEcCCC--h--HH-HHHHHHHHh---cCCCEEEEEEcccHHH
Confidence 034444455555567889999999996 2 12 233344332 2133467777776643
No 149
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.61 E-value=0.00018 Score=75.20 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=44.5
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+--.+.|+.++..+...++.+.+++|+||+- ..+|......++..+......+..+|+.|+-+
T Consensus 156 ~~~LSgGekQRv~iAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~ 218 (538)
T 1yqt_A 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPS-SYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4447889999999888889999999999987 67887765444443333322356677776643
No 150
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.61 E-value=0.00012 Score=76.59 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=85.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcccch----hHHHHHHHHH-HHHhCC-----cccce
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPRR----VAAVSVARRV-AQELGV-----RLGEE 80 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~------~i~~~~P~r----~la~~~~~~v-~~~~~~-----~~~~~ 80 (524)
+..|+.+.|.||+||||||++..+........|. ..++.|... ..+.+..... ...... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 3579999999999999999999998876544332 223333211 1122222211 011110 00011
Q ss_pred EeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCcEEEEEecc
Q 009827 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSAT 159 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~-~~~~~ii~~SAT 159 (524)
+| .. ...+..+--.+.|..++..+...++.+.+++|+||+- ..+|......+.+.+.... ..+.-+|+.|+-
T Consensus 389 ~~----l~--~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt-~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 389 LG----II--DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp TT----CG--GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred cC----Ch--hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 11 11 1123345568999999999988899999999999998 7888887666555444332 125567776664
Q ss_pred CChHHHhhhc
Q 009827 160 LDGEKVSKFF 169 (524)
Q Consensus 160 ~~~~~~~~~~ 169 (524)
+ +.+..+.
T Consensus 462 ~--~~~~~~~ 469 (538)
T 1yqt_A 462 V--LMIDYVS 469 (538)
T ss_dssp H--HHHHHHC
T ss_pred H--HHHHHhC
Confidence 3 4444443
No 151
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.58 E-value=1.8e-05 Score=84.17 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=45.8
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.-.+.|+.+|..+.+..+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 542 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEAT-SALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCC-SSCCHHHHHHHHHHHHHHHT-TSEEEEECCCH
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 447899999999888889999999999998 78888876665555554443 55566665543
No 152
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.56 E-value=7.5e-05 Score=74.45 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=44.1
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.+.|+.++..+...++.+.+++++||+- ..+|......+...+..... +..+|+.|.-+
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~~~~-~~tvi~vtHd~ 214 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPVTYQIIRRTLKQAFA-DCTVILCEARI 214 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHH-HHSCHHHHHHHHHHHHTTTT-TSCEEEECSSS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 7899999999998899999999999987 57888776665555544332 55566666543
No 153
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00049 Score=72.76 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=78.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcccc----hhHHHHHHHHHHHHhCCcccc--eEeEe-e
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPR----RVAAVSVARRVAQELGVRLGE--EVGYA-I 85 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~------~i~~~~P~----r~la~~~~~~v~~~~~~~~~~--~vg~~-~ 85 (524)
.|+.+.|.||+||||||++..+........|. ..++.+.. ...+.+. +.......... .+... .
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~---~~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL---FFKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHH---HHHHCSSTTTSHHHHHHTHH
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHH---HHHHhhcccccHHHHHHHHH
Confidence 45889999999999999999998876654432 12221110 0011111 11111000000 00000 0
Q ss_pred ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCcEEEEEeccC
Q 009827 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATL 160 (524)
Q Consensus 86 ~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~-~~~~~ii~~SAT~ 160 (524)
.+.-....+..+--.+.|..++..+...+..+.+++++||.- ..+|......+++.+.... ..+.-+|+.|+-+
T Consensus 454 ~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS-AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp HHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 000001123345558999999999999999999999999998 7888876655444443322 1255677766554
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.54 E-value=0.00043 Score=66.50 Aligned_cols=127 Identities=24% Similarity=0.261 Sum_probs=68.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-EE-cccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i-~~-~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
++++++++|++|+||||++..+........|.++ ++ ..+.+..+.++....++..+..+.. .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~-------------- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--C-------------- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--C--------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe--c--------------
Confidence 4779999999999999988888776543334333 33 3445555554444444433322100 0
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (524)
.++..+...+. .+.+++++|+|.+-....+...+.. +..++.....+-.+++++||.....+.++
T Consensus 168 ---~~~~~l~~al~---~~~~~dlvIiDT~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 168 ---YTKEEFQQAKE---LFSEYDHVFVDTAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp ---SSHHHHHHHHH---HGGGSSEEEEECCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred ---CCHHHHHHHHH---HhcCCCEEEEeCCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 12333322222 1367899999987622222222333 33333211123457788888765555444
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.52 E-value=0.00042 Score=69.25 Aligned_cols=115 Identities=17% Similarity=0.285 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE-EcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccceeec
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~-~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~~~ 100 (524)
.++|.||+|+|||+++..+........+..++ +.........+....+...++..... .| .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~-----------------~ 107 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RG-----------------L 107 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SC-----------------C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CC-----------------C
Confidence 89999999999999998887765443122333 33222222334445554544322100 00 0
Q ss_pred chHHH----HHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc----cCcEEEEEeccC
Q 009827 101 TDGVL----LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA----SKLKILITSATL 160 (524)
Q Consensus 101 T~g~l----~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~----~~~~ii~~SAT~ 160 (524)
+.+.+ ...+.. ..+..+||+||+|. ++.+.+..++ .++...+ .++.+|+.|...
T Consensus 108 ~~~~~~~~l~~~l~~---~~~~~vlilDE~~~--l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 108 SRDEFLALLVEHLRE---RDLYMFLVLDDAFN--LAPDILSTFI-RLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CHHHHHHHHHHHHHH---TTCCEEEEEETGGG--SCHHHHHHHH-HHTTCHHHHSSCCEEEEEEESST
T ss_pred CHHHHHHHHHHHHhh---cCCeEEEEEECccc--cchHHHHHHH-HHHHhCCCCCcCCEEEEEEECCc
Confidence 11222 222222 23467999999994 3555554433 3332222 266677666554
No 156
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.52 E-value=7.8e-05 Score=69.75 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHH
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
.+.+|+.++|.||+||||||++..++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 578899999999999999999998873
No 157
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.51 E-value=0.00027 Score=74.89 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=45.4
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+--.+.|..++..+...++.+.+++++||+- ..+|......+++.+......+..+|+.|+-+
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl 288 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPS-SYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 4447899999999988899999999999988 67888765554444433322356677776644
No 158
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.51 E-value=0.00016 Score=76.55 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=83.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcccch----hHHHHHHHHH-HHHhCC-----cccce
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPRR----VAAVSVARRV-AQELGV-----RLGEE 80 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~------~i~~~~P~r----~la~~~~~~v-~~~~~~-----~~~~~ 80 (524)
+..|+.+.|.||+||||||++..+........|. ..++.|... ..+.+..... ...... ..-..
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4679999999999999999999998876544332 222322211 1112221111 000000 00000
Q ss_pred EeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCcEEEEEecc
Q 009827 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSAT 159 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~-~~~~~ii~~SAT 159 (524)
+| .. ...+..+--.+.|..++..+...++.+.+++++||.- ..+|......+++.+.... ..+..+|+.|+.
T Consensus 459 ~~----l~--~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 459 LG----II--DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HT----CT--TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cC----Cc--hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 11 11 1123345568999999999988899999999999998 7888887666555444332 124566666654
Q ss_pred CChHHHhhh
Q 009827 160 LDGEKVSKF 168 (524)
Q Consensus 160 ~~~~~~~~~ 168 (524)
+ +.+..+
T Consensus 532 ~--~~~~~~ 538 (607)
T 3bk7_A 532 V--LMIDYV 538 (607)
T ss_dssp H--HHHHHH
T ss_pred H--HHHHHh
Confidence 3 444444
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.50 E-value=0.00061 Score=68.70 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-EEEcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCccccee
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~-i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~ 98 (524)
..+++++|++|+||||.+..+.......+... ++-.-|.|..+.++.+.+++..+..+.. . ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~-----~----~~~------ 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG-----N----PQE------ 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC-----C----TTC------
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe-----c----CCC------
Confidence 45789999999999988777765544332222 3334567777777766666555433210 0 000
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
..|..+.+.......-.+++++|||.+-....+...... ++.+.....++..+++++||.
T Consensus 165 -~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~e-l~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 -KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEE-MKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHH-HHHHHHhhcCceEEEEEeCCC
Confidence 122222222211111235899999999733334443333 555544444467788888886
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0016 Score=62.99 Aligned_cols=123 Identities=14% Similarity=0.114 Sum_probs=64.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCC--C----CcEEE-EcccchhHHHHHHHHHHHHhCCcccceEeEeeeccccc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYT--K----SGIIG-VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT 91 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~--~----~~~i~-~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~ 91 (524)
.+.+++|.||+|+|||+++..++...... . .-.++ +-.....-..+.+..+.+.+.. ....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g---~~~~--------- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK---ENLC--------- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC---CC-----------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC---CCCC---------
Confidence 56789999999999998888877655211 1 11222 2222222223344444444421 1000
Q ss_pred CcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 92 SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 92 ~~~~~I~~~T~g~l~~~l~~~~-~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.. .+...+.+.+.... .-....+|++||+|. ....+.+..+++. ......++-+|+.++|++
T Consensus 112 ~~------~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~-l~~q~~L~~l~~~-~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 112 GD------ISLEALNFYITNVPKAKKRKTLILIQNPEN-LLSEKILQYFEKW-ISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CC------CCHHHHHHHHHHSCGGGSCEEEEEEECCSS-SCCTHHHHHHHHH-HHCSSCCEEEEEECCSSC
T ss_pred ch------HHHHHHHHHHHHhhhccCCceEEEEecHHH-hhcchHHHHHHhc-ccccCCcEEEEEEecCcc
Confidence 00 01223333333221 224567999999994 4477777665543 222223567888899984
No 161
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=0.00034 Score=63.07 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
..+++.||+|+|||+++..+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999998877765543
No 162
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.48 E-value=0.00064 Score=60.04 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=41.1
Q ss_pred eeecchHHHHHHHHhCC-----CCCCCceEEEeCCCc-CCCChHHHHHHHHHHHhhcccCcEEEEEec-cCChHHHhhhc
Q 009827 97 IKYLTDGVLLREILSNP-----DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLRASKLKILITSA-TLDGEKVSKFF 169 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~-----~l~~~~~vIiDE~H~-r~~~~~~~~~~l~~l~~~~~~~~~ii~~SA-T~~~~~~~~~~ 169 (524)
+.-.+.|...+..+... ...+.+++|+||++- ..++...... +..++.. . ...+|+.|+ |-+.+.+..+.
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~-l~~~l~~-~-~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL-VRQIMHD-P-NVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH-HHHHHTC-T-TSEEEEECCSSCCSHHHHHHH
T ss_pred ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH-HHHHHhc-C-CCeEEEEEccCCCchHHHHHH
Confidence 44466777766665553 677899999999541 3455555544 3444433 2 445777776 45544444443
No 163
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.47 E-value=3.4e-05 Score=89.33 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=44.7
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.+.|..++..+.+..+++.+++|+||+- ..+|...-..+.+.+.+..+ +..+|..++=++
T Consensus 1218 LSgGQrQriaiARAllr~~~ILiLDEaT-SaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEKVVQEALDRARE-GRTCIVIAHRLN 1277 (1321)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCC-CSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSS
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHcC-CCEEEEeccCHH
Confidence 5889999999999999999999999998 67777665554444444443 777777776543
No 164
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.45 E-value=0.00062 Score=65.60 Aligned_cols=125 Identities=16% Similarity=0.244 Sum_probs=65.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-ccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccce
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~-~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I 97 (524)
.+++++++|++||||||++..+.......++...++. .+.|..+.++.+.+.+..+..+ + .. ....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~---~----~~--~s~~---- 169 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV---I----SH--SEGA---- 169 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE---E----CC--STTC----
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE---E----ec--CCcc----
Confidence 3568899999999999988887776544333333433 3455555554444555554332 0 00 0010
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc----c--cCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A--SKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~----~--~~~~ii~~SAT~ 160 (524)
.|..+...........+++++|+||+- +....+.+...++.+.... + ++--++.+.|+.
T Consensus 170 ---~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 170 ---DPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ---CHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ---CHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 112211111111134578999999997 4444444444444444322 1 133466667774
No 165
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.44 E-value=0.00027 Score=73.70 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=46.8
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.+--.+.|..++..+...++.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 135 ~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt-s~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl 197 (538)
T 3ozx_A 135 DANILSGGGLQRLLVAASLLREADVYIFDQPS-SYLDVRERMNMAKAIRELLK-NKYVIVVDHDL 197 (538)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh
Confidence 34457899999999888889999999999998 67888766655444444433 56677777655
No 166
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.44 E-value=0.00053 Score=69.42 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=44.0
Q ss_pred cchHHHHHHHHhCCCCCCC--ceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 100 LTDGVLLREILSNPDLSPY--SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~--~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
++.|...+..+....+.+. .++|+||+. ..++......+.+.+.... .+.++|+.|+.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt-~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~ 356 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD-AGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA 356 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT-TTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH
Confidence 6889888776655555556 999999998 7888888777666665554 378888887763
No 167
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.43 E-value=6.2e-05 Score=87.14 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=43.2
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.+.|..+|..+.+..+++.+++|+||+- ..+|...-..+.+.+....+ +..+|+.++-+.
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~t-SaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls 614 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEAT-SALDAESEGIVQQALDKAAK-GRTTIIIAHRLS 614 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEeccc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH
Confidence 6899999999999999999999999997 56776643333333333333 666777776553
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.42 E-value=0.00032 Score=66.92 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..|+.++|.||+||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46688999999999999999998888644
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.41 E-value=0.00082 Score=57.11 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 8 ~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..++.+......+..+++.||+|+|||+++..+....
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3444455555678899999999999998887665543
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.39 E-value=0.00038 Score=63.54 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=26.4
Q ss_pred HHHH-HhccCCEEEEEcCCCCcHHHHHHHHHH
Q 009827 12 TIVE-TVEQNPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 12 ~i~~-~i~~~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
+++. .+..|+.+++.||+||||||++..++.
T Consensus 11 ~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 11 SLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4443 577899999999999999999998887
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.39 E-value=0.00019 Score=66.12 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+..|+.+.|.||+||||||++..++....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999999887543
No 172
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.38 E-value=0.00058 Score=67.34 Aligned_cols=37 Identities=41% Similarity=0.382 Sum_probs=28.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~ 53 (524)
...+..++|+|||||||||++..++.......++.++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 3567799999999999999999888766554344443
No 173
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.37 E-value=0.0003 Score=62.61 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=29.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~ 58 (524)
++...++.||.||||||.+...+..... .+.++++..|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeec
Confidence 4678899999999999988777665432 24567777775
No 174
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.33 E-value=0.00054 Score=66.71 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=68.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc-chhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P-~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
.+++.+.++||+||||||++..+.......++...+...+ .+..+.++.+.+++..+..+. . .....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v---~----q~~~~----- 194 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI---K----HSYGA----- 194 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE---C----CCTTC-----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEE---e----ccccC-----
Confidence 3577899999999999999998887765555555555444 455555555556665553211 0 00000
Q ss_pred eeecchHH-HHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 97 IKYLTDGV-LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 97 I~~~T~g~-l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.|.. ....+. .....+++++++|.+.....+...... +..+.+....+..++++.|+..
T Consensus 195 ----~p~~~v~e~l~-~~~~~~~d~vliDtaG~~~~~~~l~~e-L~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 195 ----DPAAVAYDAIQ-HAKARGIDVVLIDTAGRSETNRNLMDE-MKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp ----CHHHHHHHHHH-HHHHHTCSEEEEEECCSCCTTTCHHHH-HHHHHHHHCCSEEEEEEEGGGT
T ss_pred ----CHHHHHHHHHH-HHHhccchhhHHhhccchhHHHHHHHH-HHHHHHHhcCCCCEEEEecHHH
Confidence 1111 111110 001135778999998732333333333 3333333333777888888764
No 175
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.30 E-value=0.0007 Score=60.40 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=30.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~ 58 (524)
..+...++.||.||||||.+...+..... .+.++++.+|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k~~ 45 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFKPE 45 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEec
Confidence 45778999999999999888777776542 35677777785
No 176
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.29 E-value=0.0011 Score=56.04 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHH
Q 009827 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQIL 41 (524)
Q Consensus 9 ~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l 41 (524)
.++.+......+..+++.||+|+|||+++..+.
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGC
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHHHHH
Confidence 444444555677889999999999998776553
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.25 E-value=0.0016 Score=59.86 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 11 ETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 11 ~~i~~~i~~~~---~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+...+..++ .+++.||+|+|||+++..+....
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555555 78999999999999988777654
No 178
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.20 E-value=0.0071 Score=59.98 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcccchhHHHHHHHHHHHH
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQE 72 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~-~~~~~~~~i~~~~P~r~la~~~~~~v~~~ 72 (524)
+.+..+|..++..+...+.+++..+-+.|||+++..++.. .....+..++++.|++..|..+...+...
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5678999999998866677899999999999665444432 23344668999999999988887766543
No 179
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.19 E-value=0.0044 Score=56.04 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=24.6
Q ss_pred HHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHh
Q 009827 10 EETIVETVEQN--PVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 10 ~~~i~~~i~~~--~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+++.+.+..+ ..+++.||+|+|||+++..+...
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455555544 35999999999999988777654
No 180
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.00093 Score=66.58 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.||+|+|||+++..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999988777654
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.18 E-value=0.0012 Score=60.87 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.||+|+|||+++..+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999988776544
No 182
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.17 E-value=0.0016 Score=72.05 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=78.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC--C--CCCcEEEEcc-cc-----hhHHHHH-----------HHHHHHHhCC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG--Y--TKSGIIGVTQ-PR-----RVAAVSV-----------ARRVAQELGV 75 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~--~--~~~~~i~~~~-P~-----r~la~~~-----------~~~v~~~~~~ 75 (524)
+..|+.+.|+||+||||||++..+..-.. . ....++.+.. .. ...+.+. +..+.+.+|.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 56899999999999999999998874211 0 0111233322 10 0011111 1111111111
Q ss_pred cccceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009827 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 76 ~~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~ 155 (524)
. .. ..+..+--.+.|+..+..+...++.+.+++++||.- ..+|......+.+.+.. . +..+|+
T Consensus 538 ~-----------~~--~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT-s~LD~~~~~~l~~~L~~--~-g~tvIi 600 (986)
T 2iw3_A 538 T-----------DE--MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT-NHLDTVNVAWLVNYLNT--C-GITSIT 600 (986)
T ss_dssp C-----------HH--HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT-TTCCHHHHHHHHHHHHH--S-CSEEEE
T ss_pred C-----------hh--hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHh--C-CCEEEE
Confidence 0 00 012234457899999999888889999999999998 67888777665554443 2 666777
Q ss_pred EeccCChHHHhhh
Q 009827 156 TSATLDGEKVSKF 168 (524)
Q Consensus 156 ~SAT~~~~~~~~~ 168 (524)
.|+- .+.+..+
T Consensus 601 vSHd--l~~l~~~ 611 (986)
T 2iw3_A 601 ISHD--SVFLDNV 611 (986)
T ss_dssp ECSC--HHHHHHH
T ss_pred EECC--HHHHHHh
Confidence 6654 3444444
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.0019 Score=63.65 Aligned_cols=43 Identities=16% Similarity=0.431 Sum_probs=28.0
Q ss_pred CCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 115 l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
..+..++|+||+|. ++.+....+++.+.. .+.+..+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~-~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEK-YSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHH-STTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHh-hcCCCEEEEEeCCH
Confidence 45788999999993 777766665554443 34466777776654
No 184
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.17 E-value=0.0017 Score=62.26 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=64.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccce
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I 97 (524)
.++.+.++|++|+||||++..+.......++...++ ..+.+..+..+...+.+..+..+ +. ... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~----~~~--~----- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE----VMD--G----- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE----CCT--T-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE----cCC--C-----
Confidence 356888999999999988887776654433333333 33445444433333444444321 10 000 0
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
..|..+++.........++++||+||+-....+......+ ..+......+.-++.+.|+.
T Consensus 163 --~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l-~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 --ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL-ARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH-HHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH-HHHhhhcCCCEEEEEEeCCC
Confidence 1233343333322223578999999994244554444443 33332222244455666664
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.15 E-value=0.002 Score=62.68 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..+++.||+|+|||+++..+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3579999999999999998877655
No 186
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.14 E-value=0.00026 Score=81.79 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=42.3
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
-.+.|..++..+.+..+.+.+++|+||+- ..+|......+.+ .+.....+..+|+.|+-+
T Consensus 526 ~LSgGq~QriaiARal~~~p~iliLDEpt-s~LD~~~~~~i~~-~l~~~~~~~t~i~itH~l 585 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEAVVQA-ALDKAREGRTTIVIAHRL 585 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEESTT-CSSCHHHHHHHHH-HHHHHHTTSEEEEECSCH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHH-HHHHHcCCCEEEEEecCH
Confidence 47889999999888889999999999998 6788775444333 333222355666666543
No 187
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.13 E-value=0.0055 Score=62.41 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=30.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc-cchhHH
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAA 62 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~-P~r~la 62 (524)
.|.++.++|++||||||++..+.......++...+... +.+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa 336 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAA 336 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhh
Confidence 56789999999999999999888766544444444333 334433
No 188
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.12 E-value=0.00054 Score=73.55 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=47.1
Q ss_pred chHHHHHHH-HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH
Q 009827 6 ILQYEETIV-ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (524)
Q Consensus 6 i~~~~~~i~-~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~ 71 (524)
+...|.+.+ .++......+|.||+|+|||+.+..++..... .+.+|+++.|+..++.++.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcCchHHHHHHHHHHHh
Confidence 345555544 45556779999999999999544444443322 356899999999999999999854
No 189
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.12 E-value=0.00069 Score=73.05 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=43.6
Q ss_pred eeecchHHHHHHHHhCCCCCCCc--eEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 97 IKYLTDGVLLREILSNPDLSPYS--VIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~--~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
+--.+.|..++..+...+..+.+ ++++||+- ..+|......+++.+......+..+|+.|+-++
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS-IGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT-TTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 44578899999888888888877 99999987 567766544444333333333566777766543
No 190
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.12 E-value=0.0067 Score=64.26 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=54.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHH-hcCCCCCcEEEEcccchhHHHHHHHHHHHHhC
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~-~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~ 74 (524)
+.+..+|..++..+...+..++.++-|+|||+++..++. ......+..++++.|++..+..+...+.....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 557899999999886678899999999999966544333 22333456899999999999888887765553
No 191
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.11 E-value=0.0011 Score=61.47 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..|+.++|.||+||||||++..++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46688999999999999999999988853
No 192
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.11 E-value=0.00038 Score=80.38 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=46.4
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
-.+.|..++..+.+..+.+.+++|+||+- ..+|......+.+.+.... .+..+|+.|+-++
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpT-s~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEAT-SALDTESEKVVQEALDKAR-EGRTCIVIAHRLS 1231 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCS-SSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH
Confidence 46889999998888888999999999998 7888887665444444333 3667777777664
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.08 E-value=0.00081 Score=68.90 Aligned_cols=44 Identities=9% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~ 54 (524)
+.++-.+..|+.++|.|++|+||||++..++.......+..+++
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 34445577899999999999999999988887654322333433
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.04 E-value=0.0023 Score=62.67 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 13 IVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 13 i~~~i~~~~---~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+...+.+|+ .+++.||.|+|||+++..+....
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 344445554 48999999999998888777654
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.03 E-value=0.00051 Score=66.49 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
+..+++.||+|+|||+++..+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999988877766544
No 196
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.00 E-value=0.00091 Score=71.44 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=51.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~ 71 (524)
+...|.+++..+..+..++|.||+|+|||+.+..++.......+.+|+++.|+..++.++.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 456788888877778899999999999997665555543322466899999999999999988754
No 197
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.96 E-value=0.00056 Score=67.43 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..|+.+.|.||+||||||++.+++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999998875
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.00075 Score=67.20 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..++|.||+|+|||+++..+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998877654
No 199
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.89 E-value=0.0063 Score=57.25 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
+......+..+++.||+|+|||+++..+.....
T Consensus 22 ~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 22 VSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp HHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 344455678899999999999998887766544
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.86 E-value=0.00048 Score=62.49 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 009827 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (524)
Q Consensus 5 pi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~ 49 (524)
|-..-+..+++.+.+|+.+.|.||+||||||++..+... ....|
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 334445678899999999999999999999999998877 44333
No 201
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.0012 Score=65.93 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHcccccCCCCC-CHHhH-hhccCCCChHHHH
Q 009827 390 DPPSSESLEDALKQLYLIDAIDENGSI-TSIGR-TMAELPLEPSLSR 434 (524)
Q Consensus 390 ~~p~~~~i~~a~~~L~~~g~l~~~~~l-T~lG~-~~~~lpl~p~~~~ 434 (524)
+|.....+..+++.|...|.|+....= -.-|+ .+..|.++|..-.
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~v~ 362 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKEKVL 362 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCHHHHH
Confidence 455678889999999999999652110 01342 2567778885543
No 202
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.85 E-value=0.0025 Score=67.38 Aligned_cols=111 Identities=19% Similarity=0.302 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEee
Q 009827 8 QYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (524)
Q Consensus 8 ~~~~~i~~~i~~--~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~ 85 (524)
..|.++++.+.. ....+|+|+-|.|||+.+-.++..... .++++.|+...+..+.+...+
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~----~~~vtAP~~~a~~~l~~~~~~-------------- 239 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG----RAIVTAPAKASTDVLAQFAGE-------------- 239 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS----CEEEECSSCCSCHHHHHHHGG--------------
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh----CcEEECCCHHHHHHHHHHhhC--------------
Confidence 356667776655 557899999999999888887776542 358999998887665443211
Q ss_pred ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh
Q 009827 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (524)
Q Consensus 86 ~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~ 162 (524)
.+-|..|..+.. ...+.+++|||||= ++.... ++.++.. ...++||-|++.
T Consensus 240 ----------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pl----l~~ll~~----~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 ----------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPL----LHQLVSR----FPRTLLTTTVQG 290 (671)
T ss_dssp ----------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHH----HHHHHTT----SSEEEEEEEBSS
T ss_pred ----------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHH----HHHHHhh----CCeEEEEecCCc
Confidence 156667765431 34569999999996 455544 4444433 336888889854
No 203
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.84 E-value=0.0061 Score=58.73 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=26.1
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
+.+......+..+++.||+|+|||+++..+.....
T Consensus 16 ~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 16 NEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp HHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 34444445678899999999999988887766543
No 204
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.81 E-value=0.0061 Score=60.35 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=25.5
Q ss_pred HHHHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 11 ETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 11 ~~i~~~i~~~~---~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
+.+...+..++ .+++.||+|+|||+++..+.....
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445555554 489999999999999987776553
No 205
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.80 E-value=0.0015 Score=58.92 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=30.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r 59 (524)
..|...++.|+-||||||.+...+..... .+.++++.+|..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k~~~ 66 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFKPCI 66 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEECC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEecc
Confidence 35677889999999999888877776543 355777788854
No 206
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.78 E-value=0.0019 Score=70.64 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=51.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~ 71 (524)
+...|.+++..+..+..++|.||+|+|||+.+..++.......+.+|+++.|+..++.++.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 456777788777778899999999999997666555543332466899999999999999888753
No 207
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.0026 Score=57.92 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=30.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r 59 (524)
.|...++.|+-||||||.+...+..... .+.++++.+|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeecC
Confidence 5788999999999999877777766543 456777777754
No 208
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.74 E-value=0.0074 Score=58.07 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+..+++.||+|+|||+++..+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999888766543
No 209
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.73 E-value=0.00065 Score=64.01 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=31.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcEEEEccc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~-~~~~i~~~~P 57 (524)
+..|+.++|+|||||||||++..++...... .+...+.-.|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 6789999999999999999999888766543 3434444444
No 210
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0014 Score=71.78 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~ 71 (524)
+...|.+++..+..+..++|.||.|+|||+.+..++.......+.+|+++.|+..++.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 457788888888778899999999999996555444332211356899999999999999999865
No 211
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.70 E-value=0.011 Score=57.36 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.3
Q ss_pred HHHHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 11 ETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 11 ~~i~~~i~~~~---~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+.+.+..++ .+++.||+|+|||+++..+....
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 34444555443 56777889999999988776554
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.68 E-value=0.0093 Score=60.66 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988776644
No 213
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.64 E-value=0.0026 Score=66.47 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=72.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cccchhHHHHHHHHHHHHhCCcccce--EeEeeeccccc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEE--VGYAIRFEDRT 91 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~--~~P~r~la~~~~~~v~~~~~~~~~~~--vg~~~~~~~~~ 91 (524)
.+..|+.++|.||+||||||++.+++...... +.++++ .+... .++..+. ..++...... .|. ....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~---~~l~~~~-~~~g~~~~~~~~~g~-~~~~--- 347 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR---AQLLRNA-YSWGMDFEEMERQNL-LKIV--- 347 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH---HHHHHHH-HTTSCCHHHHHHTTS-EEEC---
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH---HHHHHHH-HHcCCCHHHHHhCCC-EEEE---
Confidence 46789999999999999999999998766543 433332 23222 2333322 1222221000 000 0000
Q ss_pred CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChH-----HHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 92 SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD-----ILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 92 ~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~-----~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.....-.+.|..++.+.......+.+++|+| .- ..++.. ....+...+......+..+|+.|...
T Consensus 348 --~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~-~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 348 --CAYPESAGLEDHLQIIKSEINDFKPARIAID-SL-SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp --CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH-HHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred --EeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch-HHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 0111225788888888777677889999999 64 344433 32222221211122367778877765
No 214
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.62 E-value=0.0021 Score=64.67 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=30.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P 57 (524)
..++.++|+|||||||||++..++.......+..+..-.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 4677899999999999999999888776554445444444
No 215
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.62 E-value=0.0021 Score=57.06 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=29.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~ 58 (524)
.++..++.||.||||||.+.+.+...... +.++++..|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc
Confidence 47789999999999998777777765443 4566666664
No 216
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.62 E-value=0.027 Score=59.76 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC
Q 009827 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK 48 (524)
Q Consensus 10 ~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~ 48 (524)
.+.+...+..++.+++.||+|+||||++..+........
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 345666778899999999999999999998887665443
No 217
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.61 E-value=0.0039 Score=63.59 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=40.4
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH-HHHhCCc
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-AQELGVR 76 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v-~~~~~~~ 76 (524)
++++.-+..|+.++|.|++|+|||+++..++.......+..+++... -....++..++ +...+..
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-E~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-EMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-SSCHHHHHHHHHHHHTTCC
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHHHcCCC
Confidence 34445577889999999999999999988887654333434444322 12234555554 3444443
No 218
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.60 E-value=0.0086 Score=58.53 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 10 ~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.+.+..+..++|.||.|+|||+++..+....
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455556667899999999999999998887664
No 219
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.60 E-value=0.0041 Score=62.53 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=65.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCccccee
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~ 98 (524)
..+..+|.|+.|||||+.+...+.. ..++++.|++.++.++.+++.+. +. .......
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~~l~~kl~~~-~~----------------~~~~~~~ 216 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAEMIRRRANAS-GI----------------IVATKDN 216 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHHHHHHHHTTT-SC----------------CCCCTTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHHHHHHHhhhc-Cc----------------cccccce
Confidence 3457899999999999887665421 34578899999998887766221 10 0112234
Q ss_pred ecchHHHHHHHHhCCC--CCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009827 99 YLTDGVLLREILSNPD--LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~--l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SA 158 (524)
+.|-+..+ .+... ....+++||||+- +++.+.+..++. ..+ ..++|++--
T Consensus 217 V~T~dsfL---~~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~----~~~-~~~vilvGD 268 (446)
T 3vkw_A 217 VRTVDSFL---MNYGKGARCQFKRLFIDEGL--MLHTGCVNFLVE----MSL-CDIAYVYGD 268 (446)
T ss_dssp EEEHHHHH---HTTTSSCCCCCSEEEEETGG--GSCHHHHHHHHH----HTT-CSEEEEEEC
T ss_pred EEEeHHhh---cCCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHH----hCC-CCEEEEecC
Confidence 56655433 33222 2358999999997 566666554333 222 355666543
No 220
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0071 Score=62.92 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999998887765
No 221
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0052 Score=60.22 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=26.0
Q ss_pred HHHHHhccCCE--EEEEcCCCCcHHHHHHHHHHhc
Q 009827 12 TIVETVEQNPV--VVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 12 ~i~~~i~~~~~--~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+...+..|+. +++.||+|+||||++..+....
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44555667766 8999999999999998877654
No 222
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.58 E-value=0.0063 Score=59.13 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999999988877654
No 223
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0075 Score=58.41 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=24.5
Q ss_pred HHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHh
Q 009827 11 ETIVETVEQNP--VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 11 ~~i~~~i~~~~--~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34445555554 6999999999999988877654
No 224
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.57 E-value=0.0074 Score=58.64 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999999998887664
No 225
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0024 Score=62.76 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHh
Q 009827 10 EETIVETVEQN--PVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 10 ~~~i~~~i~~~--~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+.+...+..+ ..+++.||+|+|||+++..+...
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34566667666 56999999999999988877654
No 226
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.55 E-value=0.0021 Score=70.97 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=46.7
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009827 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (524)
+--.+.|..++..+...++.+.+++|+||.- ..+|.+....+++.+. .. +.-+|+.|+ +.+.+..+
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT-~gLD~~s~~~L~~~L~-~~--g~tVIiISH--D~e~v~~l 964 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT-NYLDRDSLGALSKALK-EF--EGGVIIITH--SAEFTKNL 964 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGG-GTCCHHHHHHHHHHHH-SC--SSEEEEECS--CHHHHTTT
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHHHH-Hh--CCEEEEEEC--CHHHHHHh
Confidence 4457889999998888889999999999998 7899888777555543 33 235566555 44434333
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0037 Score=59.47 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+++.||+|+|||+++..+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999998776653
No 228
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.50 E-value=0.011 Score=56.66 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.||+|+|||+++..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36789999999999999998877654
No 229
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.50 E-value=0.0024 Score=63.19 Aligned_cols=44 Identities=30% Similarity=0.521 Sum_probs=33.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
+.+--.+..|+.++|+|||||||||++..++...... .+.+.+-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 3444567799999999999999999999988876654 3444443
No 230
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.49 E-value=0.017 Score=55.88 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999988776543
No 231
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.49 E-value=0.0088 Score=66.17 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHH
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQIL 41 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l 41 (524)
..|+.++|.||+||||||++.++.
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998873
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.47 E-value=0.013 Score=56.13 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCccccee
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~ 98 (524)
+..++++|++|+||||++..+.......++...++ ..+.+..+..+.+.+.+..+..+.. + . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~------~-~~------ 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E------P-GE------ 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C------T-TC------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c------C-CC------
Confidence 45788999999999988877776554433333333 3455665555544455544433211 0 0 00
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCC--ChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~--~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
..|..++........-.++++||||=+- +.- ..+.+..-++.+......+.-++.+.|+.
T Consensus 163 -~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 -KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333222211111478999999987 333 33333333443333333355666666663
No 233
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.46 E-value=0.0091 Score=58.88 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4568999999999999998887765
No 234
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.46 E-value=0.0036 Score=62.63 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..|+.+.|.||+||||||++.+++...
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4578999999999999999998776443
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.46 E-value=0.008 Score=57.87 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
..+++.||+|+|||+++..+......
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47999999999999999887776543
No 236
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0037 Score=60.07 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=36.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc-chhHHHHHHHHHHH
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQ 71 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P-~r~la~~~~~~v~~ 71 (524)
..++.+.++||+||||||++..+.......++...+...+ .+..+.++.+.+++
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~ 152 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 152 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHH
Confidence 3577899999999999999998888765554555555544 34444333333433
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.40 E-value=0.0032 Score=65.12 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=29.2
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009827 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (524)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~ 47 (524)
.+...+..|++++|+|||||||||++..++......
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 344556789999999999999999999887766543
No 238
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.014 Score=56.76 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=42.0
Q ss_pred eeecchHHHHHHHHhCCC----CCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPD----LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~----l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
+...+.|...+..+...+ +.+..++++||+. ..++......++..+.... .+.++|+.|.-.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~-~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~ 282 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD-SPLDDYNAERFKRLLKENS-KHTQFIVITHNK 282 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCC-SSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence 445788877776655442 3677899999998 6888876666555444433 366788877763
No 239
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.38 E-value=0.02 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++.||+|+|||+++..+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 578999999999999988776553
No 240
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.31 E-value=0.031 Score=61.68 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc--ccCcEEEEEeccCC
Q 009827 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--ASKLKILITSATLD 161 (524)
Q Consensus 115 l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~--~~~~~ii~~SAT~~ 161 (524)
..+.+++++||+- ++++......+...++... ..+..+|+.|+-++
T Consensus 750 a~~p~LlLLDEP~-~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 750 ATSQSLVILDELG-RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp CCTTCEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred ccCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 5778999999998 7888876555443444332 12566776665543
No 241
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.30 E-value=0.0032 Score=56.67 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=28.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r 59 (524)
..|...+++||-||||||.+...+..... .+.++++..|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 46788999999999999855555554432 345677888844
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.30 E-value=0.0027 Score=54.72 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~ 49 (524)
.+|+.+.+.||+||||||++..++... ...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 789999999999999999999998877 4433
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.27 E-value=0.023 Score=55.73 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=28.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
-+..|..++|.||+||||||++.+++...... ++.++++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyI 95 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFI 95 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 34568899999999999999999888765443 3344443
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.26 E-value=0.0028 Score=57.37 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=24.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.+|+.+.|+||+||||||++..+....
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999999888765
No 245
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0052 Score=60.43 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=35.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-hhHHHHHHHHHHH
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVAQ 71 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-r~la~~~~~~v~~ 71 (524)
.++++.++||+||||||++..+.......++...+...++ +..+.++.+.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~ 209 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 209 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHH
Confidence 5678999999999999999988887655545555555553 4444433333333
No 246
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.01 Score=57.03 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009827 105 LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 105 l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~S 157 (524)
+...+...|...+..++||||+|. +..+....+++. +...+++..+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~-LEep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKA-LEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHH-HHSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHH-HhCCCCCeEEEEEE
Confidence 444455556677899999999993 455555554444 44444355555554
No 247
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.18 E-value=0.036 Score=53.61 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-ccchhHH
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAA 62 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~-~P~r~la 62 (524)
.++.++++|++|+||||++..+.......++...++. -+.+..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence 4567899999999999888777765544333344443 3444444
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.18 E-value=0.0032 Score=56.57 Aligned_cols=28 Identities=11% Similarity=0.401 Sum_probs=24.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+|+.+.++||+||||||++..+....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4678999999999999999999887764
No 249
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.17 E-value=0.0048 Score=59.17 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+--.+.+|+.+.|+||+||||||++..++...
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33456799999999999999999999988876
No 250
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.14 E-value=0.022 Score=56.94 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999988876653
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.14 E-value=0.01 Score=58.34 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=29.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
-+..|+.++|.||+||||||++.+++......++..+++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4557899999999999999998888866543333334433
No 252
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.12 E-value=0.0063 Score=61.14 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHcccccCCCC-CCHHhHh-hccCC--CChHHHH
Q 009827 392 PSSESLEDALKQLYLIDAIDENGS-ITSIGRT-MAELP--LEPSLSR 434 (524)
Q Consensus 392 p~~~~i~~a~~~L~~~g~l~~~~~-lT~lG~~-~~~lp--l~p~~~~ 434 (524)
.....+..+++.|...|+|..... -..-|+. +..|. ++|..-.
T Consensus 350 ~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 396 (412)
T 1w5s_A 350 RGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLAPHLPADRLI 396 (412)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECC-------CCEEEECTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeCCCCCHHHHH
Confidence 356678888999999999965321 1124443 45666 7775543
No 253
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.12 E-value=0.0043 Score=64.72 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHH-HhccCCEEEEEcCCCCcHHHHHHHHH
Q 009827 12 TIVE-TVEQNPVVVVIGETGSGKSTQLSQIL 41 (524)
Q Consensus 12 ~i~~-~i~~~~~~ii~apTGsGKTt~l~~~l 41 (524)
.+.- .+..|+.++|.||+||||||++.+++
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 3444 56789999999999999999999853
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.12 E-value=0.034 Score=55.86 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCccccee
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~ 98 (524)
+++++++|++|+||||++..+.......++...++ .-+.+..+..+.+.+.+..+..+. . . .. .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~---~--~-~~---~------ 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL---E--V-MD---G------ 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE---E--C-CT---T------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEE---e--c-CC---C------
Confidence 45788999999999988887776655443333333 345566665544444444443321 0 0 00 0
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
..|..+.+.........+++++|||=+-....+.....+ +..+......+.-++++.|+
T Consensus 163 -~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~e-l~~i~~~~~pd~vlLVvDa~ 221 (425)
T 2ffh_A 163 -ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE-LARLKEVLGPDEVLLVLDAM 221 (425)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGG
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHH-HHHhhhccCCceEEEEEecc
Confidence 123333222221111246899999987632334433333 33333222225556666665
No 255
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.10 E-value=0.014 Score=62.92 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=43.3
Q ss_pred eeecchHHHHHHHHhCCCCCCC---ceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009827 97 IKYLTDGVLLREILSNPDLSPY---SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~~---~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~ 160 (524)
.--.+.|+.++..+...++.+. +++++||+- ..+|......+++.+......+..+|+.|+-+
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt-~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT-TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3447889988888877766555 599999998 68887766555544444333356677766654
No 256
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.08 E-value=0.0068 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999999999988776653
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0044 Score=54.66 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=23.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.|+.++|+||+||||||++..+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999887764
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.05 E-value=0.0036 Score=57.13 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.2
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
-.+..|+.+.|+||+||||||++..++...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346789999999999999999999988766
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.04 E-value=0.0076 Score=57.94 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=30.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P 57 (524)
+++.+.++||+||||||++..+.......++...+...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 478999999999999999998888776655555555554
No 260
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.03 E-value=0.13 Score=50.17 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=42.3
Q ss_pred eeecchHHHH------HHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 97 IKYLTDGVLL------REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 97 I~~~T~g~l~------~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
+.-++.|... +.........+.+++++||+- ..+|......++..+........++|+.|+-
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~-~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT-PYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCC-TTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 3447778766 344555577889999999998 6888887766655554444435577777664
No 261
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.03 E-value=0.016 Score=54.05 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
....+++.||+|+|||+++..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999988776654
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0036 Score=56.15 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=21.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..|+.++|+||+||||||++..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467889999999999999999887754
No 263
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.98 E-value=0.038 Score=53.93 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=25.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+.+ +.. ..++|.||.|+|||+++..+....
T Consensus 23 ~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 23 EKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 34455 555 799999999999999998887765
No 264
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.02 Score=55.23 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=23.9
Q ss_pred HHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHh
Q 009827 11 ETIVETVEQNP--VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 11 ~~i~~~i~~~~--~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34455555443 4899999999999988777654
No 265
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.94 E-value=0.0074 Score=58.23 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=23.7
Q ss_pred HHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 12 TIVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 12 ~i~~~i~~~~--~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+...+..++ .+++.||+|+|||+++..+....
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3444444443 58999999999998887776543
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.94 E-value=0.0033 Score=62.41 Aligned_cols=41 Identities=34% Similarity=0.473 Sum_probs=30.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-EEccc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQP 57 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i-~~~~P 57 (524)
+..++.++|+|||||||||++..++........+.+ .+-.|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 568899999999999999999988876654323444 44444
No 267
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.93 E-value=0.0071 Score=65.55 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
|+.++|.||+||||||++.++....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999999887643
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.91 E-value=0.0054 Score=55.95 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=24.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+.+|+.++|+||+||||||++..++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467899999999999999999999888764
No 269
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.91 E-value=0.014 Score=57.53 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
....+++.||+|+|||+++..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999998887654
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.89 E-value=0.0039 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+.+|+.++++||+||||||++..+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999988765
No 271
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.81 E-value=0.015 Score=59.34 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++.||+|+|||+++..+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999998887654
No 272
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.81 E-value=0.015 Score=56.61 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH
Q 009827 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (524)
Q Consensus 10 ~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v 69 (524)
-++++.-+..|+.++|.|++|+|||+++..++..... .+..+++... -....++..++
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHH
Confidence 3455556788999999999999999999888776544 3445554432 12344555554
No 273
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.81 E-value=0.027 Score=57.29 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=24.4
Q ss_pred HHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 13 IVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 13 i~~~i~~~~--~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+...+..++ .+++.||+|+|||+++..+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 344555555 59999999999999998777654
No 274
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.76 E-value=0.022 Score=63.75 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHH
Q 009827 20 NPVVVVIGETGSGKSTQLSQI 40 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~ 40 (524)
|+.++|+||+||||||++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 789999999999999999887
No 275
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.69 E-value=0.011 Score=59.76 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+++++|++|+||||++..+.....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999988877776543
No 276
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.68 E-value=0.011 Score=63.36 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=48.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHH-HHHhcC--CCCCcEEEEcccchhHHHHHHHHHHHHhCC
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQ-ILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l~~-~l~~~~--~~~~~~i~~~~P~r~la~~~~~~v~~~~~~ 75 (524)
+.+.|.+++.. .+..++|.|+.|||||+.+.. +..... .....+|+++.+++.++.++.+++.+..+.
T Consensus 10 Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 10 LNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp CCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 55677777773 456789999999999954433 332221 112357888889999999999999887664
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.61 E-value=0.008 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..|+.++++||+||||||++..++....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4788999999999999999998876543
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.61 E-value=0.0069 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
++.++++||+||||||++..++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999998887653
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.59 E-value=0.0078 Score=54.05 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+|..++++||+||||||++..+....
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999887654
No 280
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.58 E-value=0.1 Score=51.43 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=28.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
-+..+..++|.||+|+|||+++.+++......++..+++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4557899999999999999998888776543333334443
No 281
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.58 E-value=0.023 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
++.+++.||+|+|||+++..+.....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999988877654
No 282
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.54 E-value=0.023 Score=57.76 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
....+++.||+|+|||+++..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999998887765
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.51 E-value=0.005 Score=55.64 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+++.+.|.||+||||||++..+.....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988877654
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.47 E-value=0.011 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..++.++|+||+|+||||++..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999999887654
No 285
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.43 E-value=0.031 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++.||+|+|||+++..+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999988877665
No 286
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.35 E-value=0.027 Score=61.44 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+|+.++|.||+||||||++.++...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 6789999999999999999988763
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.35 E-value=0.0061 Score=56.06 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=19.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHH-Hhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQIL-HRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l-~~~ 44 (524)
.+..|+.+.|+||+||||||++..+. ...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46789999999999999999998887 543
No 288
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.33 E-value=0.0095 Score=57.51 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=25.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
+.+|..+.|.||+||||||++..+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 567889999999999999999988776544
No 289
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.27 E-value=0.033 Score=56.55 Aligned_cols=44 Identities=7% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
++++.-+..|+.++|.|++|+|||+++.+++...... +..+++.
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~f 231 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLH 231 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEE
Confidence 3445557789999999999999999998888766543 4455554
No 290
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.16 E-value=0.013 Score=54.03 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=28.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~ 54 (524)
.+..|+.++|.||+|+||||++.+++......++..+++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 467899999999999999999887776543333334443
No 291
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.13 E-value=0.095 Score=52.86 Aligned_cols=122 Identities=17% Similarity=0.223 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--EEcccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCccccee
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i--~~~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~ 98 (524)
.+++++|++|+||||.+..+........+.++ +-.-|.+..+..+........+..+... + . .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~-~------~---~----- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPS-D------V---G----- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCC-C------S---S-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeC-C------C---C-----
Confidence 37888999999999877776655443313333 3344666666555444444444332110 0 0 0
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009827 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT 159 (524)
.+|..+.+.........+++++|||=+-....+...... +..+......+.-++++.|+
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~-L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDE-IKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHH-HHHHHHHSCCSEEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHH-HHHHHHhhcCcceeEEeecc
Confidence 133333222221111146899999998622333333333 33333222224445556665
No 292
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.12 E-value=0.095 Score=53.83 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=62.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchhHHHHHHHHHHHHhCCcccceEeEeeecccccCcccceeec
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~la~~~~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~I~~~ 100 (524)
+++++|++|+||||++..++......+....++ .-|.+..+.++.+......+..+ ++. ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~------~~~~------- 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGS------YTEM------- 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EEC------CCCS-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---Ecc------CCCC-------
Confidence 688999999999998888776543322223333 33556666555444444444332 110 0000
Q ss_pred chHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 101 T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.|..+.+.........+++++|||-+-....+..+... +..+......+.-++++.|+..
T Consensus 167 dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~e-l~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE-MLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHH-HHHHHHHHCCSEEEEEEETTCC
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHH-HHHHHhhhcCceEEEEEecccc
Confidence 11112111111101146899999998733344444433 2323222223666778888753
No 293
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.08 E-value=0.029 Score=57.71 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.....+++.||+|+|||+++..+....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 445679999999999999988876654
No 294
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.04 E-value=0.037 Score=60.45 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.||||+|||+++..+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999998887766544
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.01 E-value=0.016 Score=51.86 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=23.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..++.++|+||+||||||++..+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999887654
No 296
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.01 E-value=0.061 Score=63.71 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P 57 (524)
+..+.++++.||+|+|||+++.+++...... +.+++++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~ 1463 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDA 1463 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEc
Confidence 4578999999999999999998888766543 444554443
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.00 E-value=0.018 Score=51.57 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..++.++++|++||||||++..+....
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678899999999999999998887655
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.96 E-value=0.1 Score=53.90 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH
Q 009827 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (524)
Q Consensus 10 ~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v 69 (524)
-++++.-+..|+.++|.|++|+|||+++.+++.......+..+++... -....++..++
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHH
Confidence 345555677899999999999999999999988766542434443322 11234555554
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.94 E-value=0.013 Score=52.80 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++..+.|.||+||||||++..+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999887754
No 300
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.92 E-value=0.036 Score=53.33 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..+..+.|.||+||||||++..+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999998887654
No 301
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.87 E-value=0.21 Score=55.09 Aligned_cols=62 Identities=24% Similarity=0.235 Sum_probs=42.5
Q ss_pred ecchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 99 YLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~---~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
-.+.|..++..+...+..+ .+++|+||+- ..++......+++.+......+.-+|+.|+-++
T Consensus 805 ~LSGGErQRV~LAraL~~~p~~p~LLILDEPT-sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPT-VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4678888888777665554 4799999998 788887766655554444333566777776653
No 302
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.067 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+-+++.||+|+|||.++..+..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 34678999999999998888776654
No 303
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.77 E-value=0.018 Score=51.70 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=24.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+..++++||+||||||++..+....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678899999999999999998887654
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.77 E-value=0.021 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..++++||+||||||++..+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999998887654
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.75 E-value=0.018 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
|+.+.++||+||||||++..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 56789999999999999998887665
No 306
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.67 E-value=0.028 Score=56.26 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~~~~~ 49 (524)
..+.++||+||||||++..+........+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~G 98 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEG 98 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCc
Confidence 39999999999999999999886554443
No 307
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.61 E-value=0.035 Score=54.35 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=28.2
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009827 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (524)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~ 47 (524)
-.+.+|+.+.|.||+|+||||++..++.....+
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 346789999999999999999999988876554
No 308
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.59 E-value=0.065 Score=47.45 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=27.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r 59 (524)
+...+++.+++|.||||.+.-+...... .|.++++++-.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g-~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVG-HGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeC
Confidence 3456788889999999877666555432 356777776544
No 309
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.56 E-value=0.019 Score=53.31 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=23.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.++..+.|.||+||||||++..+....
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999998887654
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.56 E-value=0.029 Score=49.12 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
...+|+||+||||||++..+.....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999988876543
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.49 E-value=0.031 Score=49.93 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=24.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..++..+++.||+||||||++..+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999988876554
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.48 E-value=0.016 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 009827 20 NPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
|+.++++||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999998865
No 313
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.46 E-value=0.036 Score=63.86 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=50.1
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhcCC----CCCcEEEEcccchhHHHHHHHHHHHHhC
Q 009827 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHGY----TKSGIIGVTQPRRVAAVSVARRVAQELG 74 (524)
Q Consensus 4 lpi~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l-~~~l~~~~~----~~~~~i~~~~P~r~la~~~~~~v~~~~~ 74 (524)
......|.+++..- +++++|.|.-|||||+.+ ..++..... .....|+++.+|+.++.++.+++.+.++
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 45677788888753 778999999999999544 334433322 1335899999999999999998876543
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.44 E-value=0.07 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+.|.||+||||||++..+.....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999988776554
No 315
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.43 E-value=0.047 Score=47.74 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=25.7
Q ss_pred HHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 10 EETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 10 ~~~i~~~i~~--~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.+.+.. +..+++.||+|+|||+++..+....
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 4679999999999999887776543
No 316
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.018 Score=58.76 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 009827 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (524)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~ 49 (524)
+--.+..|+.+.|+||+||||||++..++.......+
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4455779999999999999999999998886654434
No 317
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.38 E-value=0.033 Score=61.13 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..++.++++||+||||||++..+....
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3567889999999999999998887654
No 318
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.35 E-value=0.023 Score=53.63 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHGYTKS 49 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~~~~~ 49 (524)
++.++||+||||||++..+........|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4789999999999999999887655433
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.33 E-value=0.025 Score=49.26 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
++..++++|++||||||++..+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46789999999999999998876543
No 320
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.33 E-value=0.045 Score=58.89 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=47.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhcC--CCCCcEEEEcccchhHHHHHHHHHHHHhCC
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l-~~~l~~~~--~~~~~~i~~~~P~r~la~~~~~~v~~~~~~ 75 (524)
+.+.|.+++.. .+..++|.|+.|||||+.+ ..+..... ......|+++..++.++.++.+++.+.++.
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 45677777775 3678899999999999444 33332221 113457888888899999999999877653
No 321
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.31 E-value=0.13 Score=56.29 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=46.1
Q ss_pred ceeecchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 96 LIKYLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 96 ~I~~~T~g~l~~~l~~~~~l~~---~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.+.-++.|..++..+...+..+ .+++|+||.- ..+|......+++.+......+.-+|+.|+-++
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~ 794 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT-TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 3445788888898888877775 6999999998 788877766655554444333566777776553
No 322
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.11 Score=52.30 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+-+++.||+|+|||+++..+..+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 356789999999999998888777654
No 323
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.30 E-value=0.17 Score=55.85 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=43.7
Q ss_pred eeecchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 97 IKYLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 97 I~~~T~g~l~~~l~~~~~l~~---~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
+.-++.|..++..+...++.+ .+++|+||.- ..++......+++.+......+..+|+.|.-++
T Consensus 861 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~ 927 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPT-TGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 334677888877777666654 5999999998 788887766655555444333566777776654
No 324
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.27 E-value=0.067 Score=48.99 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~ 58 (524)
+..+..+++.|+.||||||++..+...... +...+..-.|.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~ 63 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG 63 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC
Confidence 346788999999999999999988876654 33333333444
No 325
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.17 E-value=0.028 Score=54.87 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=28.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~ 53 (524)
+.++..+.++||+||||||++..++......++...+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 4578899999999999999999988765444344333
No 326
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.11 E-value=0.028 Score=51.51 Aligned_cols=36 Identities=36% Similarity=0.470 Sum_probs=27.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P 57 (524)
.+|..+.+.|++||||||++..+... .+...+.-.|
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 46788999999999999999877654 3445555555
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.08 E-value=0.019 Score=53.14 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=24.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
-+..|+.++|.|++|+|||+++.+++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999988887653
No 328
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.02 E-value=0.033 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+.|.|++||||||++..+....
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998877654
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.99 E-value=0.034 Score=51.51 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
++..++|+||+||||||++..+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887443
No 330
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.98 E-value=0.029 Score=54.34 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.++|+|+.||||||++..++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999888653
No 331
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.94 E-value=0.1 Score=57.66 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++++||+|+|||+++..+....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999888777654
No 332
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.91 E-value=0.031 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+..++|+||||||||++...+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999988776554
No 333
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.90 E-value=0.083 Score=50.95 Aligned_cols=58 Identities=7% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA 70 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~ 70 (524)
++++--+..|+.++|.|++|+|||+++.+++...... +..+++...- ....++..++.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESS-SCHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECC-CCHHHHHHHHH
Confidence 4455567889999999999999999998888765443 3444443321 33445555543
No 334
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.84 E-value=0.053 Score=47.21 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 11 ETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 11 ~~i~~~i~~--~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+.+.+.. ...+++.||+|+|||+++..+....
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 5689999999999999888776654
No 335
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.78 E-value=0.059 Score=54.52 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.8
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 009827 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (524)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~ 56 (524)
-.+.+|+.+.|.||+||||||++..++.......+...+.-.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 446789999999999999999999888877654333333333
No 336
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.75 E-value=0.038 Score=46.84 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 009827 20 NPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
....+|+||||||||+++..+..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34779999999999998887764
No 337
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.70 E-value=0.05 Score=47.34 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
+..++++|+.||||||+...+.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999988776543
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.67 E-value=0.043 Score=49.75 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=24.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.+.++++|.||+||||+|+...+....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567788999999999999998887665
No 339
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.67 E-value=0.05 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998877654
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.65 E-value=0.035 Score=49.84 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 14 VETVEQNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
++.+..+..+.|+|++||||||++..+...
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345667888999999999999999877654
No 341
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.63 E-value=0.04 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++|+|||||||||+...+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999998876654
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.59 E-value=0.033 Score=48.95 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.|+.||||||+...+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999998876543
No 343
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.55 E-value=0.049 Score=55.50 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=27.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~ 50 (524)
+.+ +.+.|+||+||||||++..+........|.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 446 889999999999999999998876655444
No 344
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.54 E-value=0.043 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+..++|+||||||||+++..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999988777654
No 345
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.53 E-value=0.047 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+++.||+|+||||++..+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 779999999999999999887765
No 346
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.52 E-value=0.04 Score=47.56 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 009827 21 PVVVVIGETGSGKSTQLSQI 40 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~ 40 (524)
..++++|++||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999999877
No 347
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.52 E-value=0.05 Score=48.03 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+-++|+||+|+||||++..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347999999999999998877654
No 348
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.51 E-value=0.074 Score=50.95 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=25.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~ 47 (524)
+..++.+.+.||+|+||||++..++ .....
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 3468899999999999999999988 55443
No 349
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.45 E-value=0.052 Score=47.74 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=23.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..+..++++|+.||||||++..+.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999988776554
No 350
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.14 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+-+++.||+|+|||.++..+..+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 4679999999999998888776654
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.44 E-value=0.057 Score=50.23 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+.|.||+||||||++..+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999887544
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.40 E-value=0.051 Score=47.82 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..+++.|+.||||||++..+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998876644
No 353
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.35 E-value=0.052 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||++..+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998877654
No 354
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.35 E-value=0.056 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..+.|.||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999887654
No 355
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.33 E-value=0.06 Score=49.10 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=21.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
......+++.|++||||||++..+....
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999998877654
No 356
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.33 E-value=0.24 Score=58.82 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=31.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
.+..++++++.||+|||||+++.+++......+...++++
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit 1116 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1116 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5778999999999999999999999887765433344443
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.26 E-value=0.03 Score=48.75 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
+.+.|+|++||||||++..++.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46889999999999999888876543
No 358
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.26 E-value=0.066 Score=53.38 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=31.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~ 60 (524)
.+.+++|.|+|||||||++..++..... .+..+++.-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcC
Confidence 5778999999999999988887765543 3556666777554
No 359
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.21 E-value=0.08 Score=51.28 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+..|+.++|.||+|+|||+++.+++....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 356789999999999999999988887653
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.18 E-value=0.076 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=22.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.....+++.||.||||||++..+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999998887554
No 361
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.16 E-value=0.25 Score=54.34 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=43.3
Q ss_pred eecchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009827 98 KYLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~---~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~~~~~~ii~~SAT~~ 161 (524)
.-++.|..++..+...+..+ .+++|+||.- ..+|......+++.+......+..+|+.|+-++
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~ 909 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT-TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 909 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 34677888777776666654 5999999998 788887766655555444333566777776654
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.14 E-value=0.13 Score=46.04 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
++..+++.|+.||||||++..+......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999988776543
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.13 E-value=0.074 Score=46.99 Aligned_cols=28 Identities=32% Similarity=0.651 Sum_probs=23.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.++..+++.|+.||||||+...+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998876554
No 364
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.11 E-value=0.062 Score=46.93 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+.++++.|++||||||++..+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999998776554
No 365
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.08 E-value=0.13 Score=55.77 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=46.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhcC--CCCCcEEEEcccchhHHHHHHHHHHHHhC
Q 009827 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (524)
Q Consensus 6 i~~~~~~i~~~i~~~~~~ii~apTGsGKTt~l-~~~l~~~~--~~~~~~i~~~~P~r~la~~~~~~v~~~~~ 74 (524)
+.+.|.+++... +..++|.|+.|||||+.+ ..+..... ......|+++..|+.+|.++.+++.+.++
T Consensus 12 Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 456777777753 567789999999999443 33333221 11235788888999999999999887655
No 366
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.05 E-value=0.062 Score=47.89 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=22.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+++.|+.||||||++..+....
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357789999999999999998776654
No 367
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.04 E-value=0.054 Score=54.23 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=26.2
Q ss_pred HHHHHhccCCE--EEEEcCCCCcHHHHHHHHHHh
Q 009827 12 TIVETVEQNPV--VVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 12 ~i~~~i~~~~~--~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+--.+..|.. +.|+||+||||||++..++..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44456788999 999999999999999988765
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.00 E-value=0.073 Score=47.13 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=24.5
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+..+++.|+.||||||+...+....
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345567889999999999999998876654
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.99 E-value=0.068 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
++.++|+|++||||||+...+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998887654
No 370
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.99 E-value=0.078 Score=51.88 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=25.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
...|+.+.++||+|+||||++..++....
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999998887654
No 371
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.98 E-value=0.059 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
...++|+||||||||+++..+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 346889999999999988777654
No 372
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.96 E-value=0.052 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..++++|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46688999999999999998876644
No 373
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.95 E-value=0.052 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
.+..++|.||||+|||+++..++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988877654
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.94 E-value=0.06 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+|..++++|+.||||||++..+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999988776643
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.87 E-value=0.055 Score=53.42 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=25.6
Q ss_pred hcc--CCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 17 VEQ--NPVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 17 i~~--~~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
+.. ++.+.|+||+||||||++..+......
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456 889999999999999999998887654
No 376
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.87 E-value=0.074 Score=46.71 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
..+..++++|+.||||||+...+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999999877654
No 377
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.83 E-value=0.38 Score=52.26 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+-+++.||.|+|||+++..+..+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999998877654
No 378
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.80 E-value=0.064 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 009827 21 PVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~ 42 (524)
..+++.|++||||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999987765
No 379
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.80 E-value=0.11 Score=50.86 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..|+.++|.||+|||||+++.+++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35578899999999999999998888764
No 380
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.76 E-value=0.069 Score=51.15 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=25.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~ 46 (524)
+..++.+.+.||+||||||++..+......
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 346889999999999999999988765544
No 381
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.72 E-value=0.22 Score=54.23 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCC-----------EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCc
Q 009827 8 QYEETIVETVEQNP-----------VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR 76 (524)
Q Consensus 8 ~~~~~i~~~i~~~~-----------~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~v~~~~~~~ 76 (524)
...+.+..++.... .+++.||||+|||+++..+.... +..++.+.-...... ..
T Consensus 465 ~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~~~~-----------~~ 529 (758)
T 1r6b_X 465 KAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----GIELLRFDMSEYMER-----------HT 529 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGCSSS-----------SC
T ss_pred HHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----cCCEEEEechhhcch-----------hh
Q ss_pred ccceEeEeeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc---------
Q 009827 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--------- 147 (524)
Q Consensus 77 ~~~~vg~~~~~~~~~~~~~~I~~~T~g~l~~~l~~~~~l~~~~~vIiDE~H~r~~~~~~~~~~l~~l~~~~--------- 147 (524)
+...+| .....+-+...+.+...+...+ .++|++||++ .+..+....++..+-...
T Consensus 530 ~~~l~g---------~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEi~--~~~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 530 VSRLIG---------APPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIE--KAHPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp CSSSCC---------CCSCSHHHHHTTHHHHHHHHCS----SEEEEEETGG--GSCHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred HhhhcC---------CCCCCcCccccchHHHHHHhCC----CcEEEEeCcc--ccCHHHHHHHHHHhcCcEEEcCCCCEE
Q ss_pred --ccCcEEEEEe
Q 009827 148 --ASKLKILITS 157 (524)
Q Consensus 148 --~~~~~ii~~S 157 (524)
. +..+|+.|
T Consensus 595 ~~~-~~~iI~ts 605 (758)
T 1r6b_X 595 DFR-NVVLVMTT 605 (758)
T ss_dssp ECT-TEEEEEEE
T ss_pred ecC-CeEEEEec
No 382
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.64 E-value=0.059 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
..+|+|||||||||++..+...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999877643
No 383
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.58 E-value=0.068 Score=47.67 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...++|+|+.||||||++..+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999998876654
No 384
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.57 E-value=0.088 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..++.+++.||+||||||++..+....
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35688999999999999999998887653
No 385
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.54 E-value=0.16 Score=56.25 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..+++.||||+|||+++..+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999988887766543
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.40 E-value=0.11 Score=46.70 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++..++++|+.||||||++..+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999998877654
No 387
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.38 E-value=0.085 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
++++.||+||||+|+...+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999998877653
No 388
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.37 E-value=0.068 Score=55.64 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=28.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i 52 (524)
.+.+|+.++++|++||||||++..+........++.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 3557899999999999999999988876654444333
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.34 E-value=0.085 Score=47.45 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+..+++.|+.||||||++..+....
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46778899999999999999998776654
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.28 E-value=0.11 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..+.++|++||||||++..++....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4688999999999999988876543
No 391
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.27 E-value=0.088 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 009827 21 PVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
..++|+|||||||||+...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999988766554
No 392
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.27 E-value=0.086 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..++|+|||||||||+...+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478999999999999887766543
No 393
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.21 E-value=0.12 Score=49.17 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+.|+|++||||||++..+....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999987776544
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.19 E-value=0.11 Score=44.75 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
-++++|.|+.||||||+...+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999987766543
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.17 E-value=0.11 Score=47.15 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.|+.||||||+...+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999998877654
No 396
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.06 E-value=0.11 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
-..++++|++||||||++..++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3578999999999999998887654
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.03 E-value=0.089 Score=46.31 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..+++.|++||||||+...+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998776543
No 398
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.00 E-value=0.13 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4568999999999999998887654
No 399
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.97 E-value=0.1 Score=46.33 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+++.|+.||||||++..+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999988876543
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.97 E-value=0.083 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..++++||+||||||++..+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998887654
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.95 E-value=0.21 Score=44.99 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=27.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~ 58 (524)
.|..+++.|+.||||||++..+.......+-..+..-.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 5778999999999999999887665543222333444564
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.85 E-value=0.097 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
....+++.|+.||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999998877654
No 403
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.82 E-value=0.11 Score=49.66 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457789999999999999998887764
No 404
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.80 E-value=0.11 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009827 22 VVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~ 42 (524)
.++|+|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999988766
No 405
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.77 E-value=0.11 Score=46.60 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+++.|+.||||||++..+....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457889999999999999998776543
No 406
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.76 E-value=0.099 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++.||+|+||||++..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999887765
No 407
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.72 E-value=0.11 Score=46.79 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++|.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998876654
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.71 E-value=0.1 Score=46.69 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009827 22 VVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~ 42 (524)
.+.+.|+.||||||+...+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999987754
No 409
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.71 E-value=0.1 Score=46.74 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
....+|+||+||||||++..+....
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999888765543
No 410
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.70 E-value=0.15 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 6779999999999999888776654
No 411
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.69 E-value=0.11 Score=50.25 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 10 ~~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.+...+..+..+++.||+|+|||+++..+....
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34555666778899999999999999988776654
No 412
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.67 E-value=0.11 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.-+++.||+||||||++..+.....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3489999999999999998877653
No 413
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.67 E-value=0.12 Score=46.50 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998876654
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.62 E-value=0.61 Score=54.69 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
+..++.++|.||+|+||||++.+++......++..+++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 567899999999999999999888876654333333433
No 415
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.61 E-value=0.24 Score=44.69 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=27.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC-cEEEEcccch
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GIIGVTQPRR 59 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~-~~i~~~~P~r 59 (524)
+|..+++.|+.||||||++..+.......+. ..++.-.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 4778999999999999999877665433222 2344445643
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.61 E-value=0.21 Score=44.02 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998876654
No 417
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=91.59 E-value=0.34 Score=46.91 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=57.2
Q ss_pred ccccCCC--CCCHHhHhhccCCCChHHHHHHHHHhhhC-CHHHHHHHHHHhccCCcccCCCCchhHHHhhc--cCCCCC-
Q 009827 408 DAIDENG--SITSIGRTMAELPLEPSLSRMLMEANEFG-CLSQALTVAAMLSAETTLLPGRSKSTEKKRKH--TPLELP- 481 (524)
Q Consensus 408 g~l~~~~--~lT~lG~~~~~lpl~p~~~~~l~~~~~~~-c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~~~--~~~~~~- 481 (524)
|+++++| ..|++|+++|.++|++..++.+.....-. ...+++.+.|.-..-+.+....++..+..... ..+...
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~ 80 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPE 80 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCT
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccc
Confidence 5677766 57899999999999999999999876544 46677777765544433222223322222211 122100
Q ss_pred CCCCCCCHHHHHHHHHHHHcc
Q 009827 482 DGSGWGDHIQLLQIYECWDEC 502 (524)
Q Consensus 482 ~~~~~~D~~~~~~~~~~~~~~ 502 (524)
......-|....-+.++|.+.
T Consensus 81 ~~~~~~~~~K~~lLLqa~isr 101 (328)
T 3im1_A 81 HTSSGSVSFKVFLLLQAYFSR 101 (328)
T ss_dssp TSCSSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHCC
Confidence 112234588888889999874
No 418
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.55 E-value=0.11 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+++.|+.||||||++..+.....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999988776543
No 419
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.51 E-value=0.14 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..++++|+.||||||++..+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999998876654
No 420
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.50 E-value=0.16 Score=55.12 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=65.2
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc-cccccCCCC
Q 009827 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI-AETSLTVDG 291 (524)
Q Consensus 213 ~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i-~e~gidip~ 291 (524)
+.+++|.+|++.-+...++.+.+.+.. .++.+..+||+++..+|..+++...+|..+|+|+|.. +...+.+.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~------~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK------FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC------SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh------cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 468999999999999999999887643 2577888999999999988888888899999999973 344677888
Q ss_pred eeEEE
Q 009827 292 VVYVI 296 (524)
Q Consensus 292 v~~VI 296 (524)
+.+||
T Consensus 491 l~lVV 495 (780)
T 1gm5_A 491 LGLVI 495 (780)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 88777
No 421
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.43 E-value=0.12 Score=44.78 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+++|.|+.||||||+...+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999998877654
No 422
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.35 E-value=0.034 Score=53.33 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=23.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.+|+.+.++||+|+||||++..++...
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34578999999999999999999876543
No 423
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.32 E-value=0.19 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.||+|+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999988777654
No 424
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.24 E-value=0.1 Score=52.84 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA 62 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la 62 (524)
.+.+++|.|+||||||+.+..++..... .+..++++-|.....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL-RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH-TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCchh
Confidence 3567899999999999776655544322 356788888877664
No 425
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.21 E-value=0.048 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999998877654
No 426
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.16 E-value=0.11 Score=45.23 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=17.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
++..+++.|+.||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999998876554
No 427
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.14 E-value=0.12 Score=51.30 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 009827 21 PVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
..++|+||||||||+++..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 46889999999999887766544
No 428
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.11 E-value=0.042 Score=50.19 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~~~~~~ 50 (524)
.+.|+||+||||||++..+........+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~ 57 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTL 57 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCe
Confidence 45688999999999999988877655443
No 429
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.10 E-value=0.22 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHH
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
.++.+++|.|+||||||+++..++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999988877765
No 430
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.10 E-value=0.12 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 009827 23 VVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 23 ~ii~apTGsGKTt~l~~~l~~ 43 (524)
++|.|++|||||+++.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999988754
No 431
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.09 E-value=0.15 Score=45.42 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+...+++.||.|+|||+++..++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999888666543
No 432
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.07 E-value=0.15 Score=45.35 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.|+.||||||+...+....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999998776554
No 433
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.05 E-value=0.092 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHH
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQIL 41 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l 41 (524)
+..+..++++|++|+||||++..+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4567789999999999999987664
No 434
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.98 E-value=0.15 Score=49.87 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=28.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~ 54 (524)
+..+..++|.|++|+||||++.+++......+...+++
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 97 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 97 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 55789999999999999999988877654332333333
No 435
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.86 E-value=0.14 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+++.||+||||||++..+.....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 489999999999999998877653
No 436
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.83 E-value=0.16 Score=44.42 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..++++|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999998876654
No 437
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.82 E-value=0.15 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++.|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999998776644
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.79 E-value=0.13 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 009827 20 NPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
+..++|.|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987754
No 439
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.77 E-value=1.3 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=24.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG 53 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~ 53 (524)
...+-.+++.|++|+|||+++..+-.......+..+.
T Consensus 157 a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~ 193 (387)
T 1ny5_A 157 SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVA 193 (387)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEE
T ss_pred cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEE
Confidence 3456678999999999998776554444333333433
No 440
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.76 E-value=0.65 Score=54.42 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=29.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~ 55 (524)
-+..+.+++|.||+|||||+++.+++......+...+++.
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~ 69 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 69 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEE
Confidence 4567899999999999999998888776443323333433
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.74 E-value=0.18 Score=45.48 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999998877654
No 442
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.70 E-value=0.16 Score=49.75 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-EEEEcccc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPR 58 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~-~i~~~~P~ 58 (524)
+..+.++|++|+||||++..++.......+. .++...|.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 5678999999999999999988755433333 33334443
No 443
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.69 E-value=0.15 Score=44.69 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+++.|+.||||||+...+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998776543
No 444
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.69 E-value=0.15 Score=44.85 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++++|++|+||||++..+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999887754
No 445
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=90.61 E-value=0.13 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 009827 20 NPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
....+|+||||||||+++..+..
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999999887765
No 446
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.60 E-value=0.18 Score=46.06 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.|+.||||||++..+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999998887654
No 447
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.59 E-value=0.1 Score=49.93 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=28.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcEEEEccc
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~~~-~~~~i~~~~P 57 (524)
+..| .+.|.||+|+||||++.+++...... .++.++++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4567 88999999999999988887765432 2455655543
No 448
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.58 E-value=0.17 Score=51.01 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..++.++|+||+||||||++..+.....
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3578999999999999999998877654
No 449
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.57 E-value=0.14 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
....++++|+.||||||++..+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999877654
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.53 E-value=0.16 Score=44.93 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++++|++|+||||++..+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 451
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.50 E-value=0.11 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..++++|++||||||++..+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999998877654
No 452
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.47 E-value=0.17 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998877654
No 453
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.40 E-value=0.35 Score=44.33 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.+..+++.|+.||||||++..+.....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999988766543
No 454
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.37 E-value=0.24 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+..|..++|.||+|+|||+++.+++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999888875
No 455
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.36 E-value=0.16 Score=43.51 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999998776644
No 456
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.32 E-value=0.23 Score=45.30 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=20.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 16 ~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.+|..+++.|+.||||||++..+....
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999998776554
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.31 E-value=0.16 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
...+.|+|++||||||+...+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999877654
No 458
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.29 E-value=0.17 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998776644
No 459
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.25 E-value=0.2 Score=48.79 Aligned_cols=29 Identities=28% Similarity=0.166 Sum_probs=23.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
..++..+.++|++|+||||++..++....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34577899999999999999988876543
No 460
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=90.20 E-value=1.4 Score=42.06 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=62.9
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccC--
Q 009827 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT-- 288 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~gid-- 288 (524)
..+.++|||+...+...-+-..+... ++....+.|.....+++ . .+....+.+.|....-|++
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~~----------~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~ 187 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLGN----------KVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYP 187 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTTS----------SCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSC
T ss_pred hCCCEEEEEECChhHHHHHHHHHhcC----------CCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcc
Confidence 34569999999888777666655443 78888888885443322 1 2345667676776666675
Q ss_pred ---CCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccC--CCCCCeEEEecCchhhhh
Q 009827 289 ---VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG--RTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 289 ---ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG--R~~~G~~~~l~~~~~~~~ 351 (524)
.-..+.||-++ ..|||.. .-.+++.|+-|.| +.++=.+|||.+....+.
T Consensus 188 ~~nl~~aD~VI~~D----sdwNp~~----------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 188 IKSKARFDMLICLD----TTVDTSQ----------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCCSCCSEEEECS----TTCCTTS----------HHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cccCCCCCEEEEEC----CCCCCCC----------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 44566676432 2234432 1123344555553 335668999998877766
No 461
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=90.16 E-value=0.15 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
.| .++++||+||||||++..+..
T Consensus 26 ~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CC-eEEEECCCCCChhHHHHHHHH
Confidence 44 889999999999999988775
No 462
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.12 E-value=0.17 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998876654
No 463
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.98 E-value=0.22 Score=51.22 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=27.6
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+.+..++..+..+++.||+|+|||+++..+....
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 4556667788999999999999999888776554
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.57 E-value=0.26 Score=45.10 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..-.+.|.||+||||||+...+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999998877654
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.41 E-value=0.4 Score=43.26 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P 57 (524)
.+|..+++.|+.||||||++..+...... ...+.-.|
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep 39 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFP 39 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEec
Confidence 36889999999999999999888776543 23344456
No 466
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.30 E-value=0.42 Score=42.44 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH
Q 009827 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA 61 (524)
Q Consensus 23 ~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l 61 (524)
+++.|+-||||||++..+.......+...+..-.|....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 578899999999999877654433223344445675433
No 467
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.16 E-value=0.64 Score=41.51 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r 59 (524)
+..+++.|+-||||||++..+...... +...+..-.|..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP~~ 40 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGG 40 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCCCC
Confidence 346789999999999999877665532 223334445643
No 468
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.94 E-value=0.22 Score=42.88 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+..++++|++|+||||++..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557899999999999999888754
No 469
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.81 E-value=0.28 Score=41.25 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.76 E-value=0.31 Score=44.53 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 18 ~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+..+.|.|+.||||||+...+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999998776544
No 471
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.67 E-value=0.95 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.-+++.||.|+|||.++..+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 458999999999998888777764
No 472
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.57 E-value=0.28 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988653
No 473
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.52 E-value=0.3 Score=43.22 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+-.+.|+|+.||||||+...+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 446889999999999999877654
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.50 E-value=0.29 Score=41.24 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.+++.|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888764
No 475
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.46 E-value=0.24 Score=47.44 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHh
Q 009827 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 17 i~~~~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
+..+..+++.||+|+|||+++.+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445677899999999999999888765
No 476
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.44 E-value=0.28 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+..+++.||+|+||||++..+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999998887765
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.39 E-value=0.29 Score=41.47 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 478
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.28 E-value=0.31 Score=42.64 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
-.++++|++|+||||++..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999998887643
No 479
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.06 E-value=0.33 Score=41.17 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++++|++|+|||+++..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999887654
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.93 E-value=0.53 Score=45.72 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.9
Q ss_pred HHHHHHHHHh----ccCCE--EEEEcCCCCcHHHHHHHHHH
Q 009827 8 QYEETIVETV----EQNPV--VVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 8 ~~~~~i~~~i----~~~~~--~ii~apTGsGKTt~l~~~l~ 42 (524)
...+.++..+ ..|+. +++.|+.||||||+...+..
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3444555544 46666 89999999999998876654
No 481
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.83 E-value=0.36 Score=44.12 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 22 VVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.++++|++|+||||++..++....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999998876443
No 482
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.83 E-value=0.34 Score=41.02 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.++++|++|+|||+++..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999998887643
No 483
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.80 E-value=0.35 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.673 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999888764
No 484
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.69 E-value=0.36 Score=40.67 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999887754
No 485
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.62 E-value=0.35 Score=41.03 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999888754
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.56 E-value=0.34 Score=42.09 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009827 22 VVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~ 42 (524)
.++++|++|+||||++..+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999998865
No 487
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.56 E-value=0.53 Score=48.02 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHHHh--ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 13 IVETV--EQNPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 13 i~~~i--~~~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+++.+ ....++++.||+|+|||+++..+....
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44444 356689999999999999988777654
No 488
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.53 E-value=0.37 Score=40.68 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999888754
No 489
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.50 E-value=0.44 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
+..+++.||+|+|||+++..+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3579999999999999888776654
No 490
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.43 E-value=0.37 Score=42.80 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 009827 22 VVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
.+.|.|+.||||||+...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78899999999999998876644
No 491
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.41 E-value=0.33 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 009827 21 PVVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~ 43 (524)
..+++.|++||||||++..+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999877653
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.37 E-value=0.36 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999988777654
No 493
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.31 E-value=0.39 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 21 PVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 21 ~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
..+.|.|+.||||||+...+....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999988776543
No 494
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.30 E-value=0.39 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999988754
No 495
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.21 E-value=0.38 Score=40.83 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009827 22 VVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~ 42 (524)
.++++|++|+||||++..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999988875
No 496
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.18 E-value=0.4 Score=40.68 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+||||++..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999888764
No 497
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.16 E-value=0.22 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 009827 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~~~ 44 (524)
...+++.||+|+|||+++..+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4558999999999999998777654
No 498
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.14 E-value=0.65 Score=41.60 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=22.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009827 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 19 ~~~~~ii~apTGsGKTt~l~~~l~~~~ 45 (524)
.-..++++|++|+||||++..++....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999988887653
No 499
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.04 E-value=0.34 Score=42.39 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 009827 20 NPVVVVIGETGSGKSTQLSQILH 42 (524)
Q Consensus 20 ~~~~ii~apTGsGKTt~l~~~l~ 42 (524)
.-.++++|++|+||||++..++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999988865
No 500
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.98 E-value=0.39 Score=40.54 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 009827 22 VVVVIGETGSGKSTQLSQILHR 43 (524)
Q Consensus 22 ~~ii~apTGsGKTt~l~~~l~~ 43 (524)
.++++|++|+|||+++..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888753
Done!