BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009829
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 487 bits (1254), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/413 (56%), Positives = 307/413 (74%), Gaps = 3/413 (0%)
Query: 93 LKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNE 151
++DVP A+++ LFI+KL CCV+FDF +DP +LK KE+KR L E+V+Y+T E
Sbjct: 30 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITE 89
Query: 152 TVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVAS 211
+ E V M + N+FRTL P N D EE+EP ++ AWPHLQLVYEF LRF+ S
Sbjct: 90 PIYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 147
Query: 212 PETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNI 271
P+ +AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNI
Sbjct: 148 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207
Query: 272 FYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQL 331
FYRFI+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL
Sbjct: 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 267
Query: 332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPL 391
+YC+ QF+EKD L + V+ LLKYWP T+S KEVMFLNELEE+L+ + EF + M PL
Sbjct: 268 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 327
Query: 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVH 451
F+Q+A+C++S HFQVAERAL+ WNN++I +LI N ILPI+FP+L +N++ HWN+ +H
Sbjct: 328 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIH 387
Query: 452 SLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEGN 504
L N K+F +++ +LF +C +F+ + KE RE W ++E LA+ N
Sbjct: 388 GLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKAN 440
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/409 (56%), Positives = 304/409 (74%), Gaps = 3/409 (0%)
Query: 93 LKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNE 151
++DVP A+++ LFI+KL CCV+FDF +DP +LK KE+KR L E+V+Y+T E
Sbjct: 1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITE 60
Query: 152 TVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVAS 211
+ E V M + N+FRTL P N D EE+EP ++ AWPHLQLVYEF LRF+ S
Sbjct: 61 PIYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 118
Query: 212 PETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNI 271
P+ +AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNI
Sbjct: 119 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 178
Query: 272 FYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQL 331
FYRFI+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL
Sbjct: 179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238
Query: 332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPL 391
+YC+ QF+EKD L + V+ LLKYWP T+S KEVMFLNELEE+L+ + EF + M PL
Sbjct: 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 298
Query: 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVH 451
F+Q+A+C++S HFQVAERAL+ WNN++I +LI N ILPI+FP+L +N++ HWN+ +H
Sbjct: 299 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIH 358
Query: 452 SLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEEL 500
L N K+F +++ +LF +C +F+ + KE RE W ++E L
Sbjct: 359 GLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 407
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/405 (56%), Positives = 300/405 (74%), Gaps = 3/405 (0%)
Query: 97 PSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQ 155
P A+++ LFI+KL CCV+FDF +DP +LK KE+KR L E+V+Y+T E +
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 156 EAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETD 215
E V M + N+FRTL P N D EE+EP ++ AWPHLQLVYEF LRF+ SP+
Sbjct: 61 EVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 118
Query: 216 AKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 275
+AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRF
Sbjct: 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 178
Query: 276 IFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCI 335
I+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL+YC+
Sbjct: 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238
Query: 336 TQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQI 395
QF+EKD L + V+ LLKYWP T+S KEVMFLNELEE+L+ + EF + M PLF+Q+
Sbjct: 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQL 298
Query: 396 ARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTL 455
A+C++S HFQVAERAL+ WNN++I +LI N ILPI+FP+L +N++ HWN+ +H L
Sbjct: 299 AKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 358
Query: 456 NVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEEL 500
N K+F +++ +LF +C +F+ + KE RE W ++E L
Sbjct: 359 NALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 403
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/378 (57%), Positives = 280/378 (74%), Gaps = 3/378 (0%)
Query: 101 KQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVK 159
++ LFI+KL CCV+FDF +DP +LK KE+KR L E V+Y+T E + E V
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 160 MVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLA 219
+ N FRTL P N D EE+EP ++ AWPHLQLVYEF LRF+ SP+ +A
Sbjct: 61 XFAVNXFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA 118
Query: 220 KRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFET 279
K+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIFYRFI+ET
Sbjct: 119 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 178
Query: 280 ERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFV 339
E HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL+YC+ QF+
Sbjct: 179 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL 238
Query: 340 EKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCL 399
EKD L + V+ LLKYWP T+S KEV FLNELEE+L+ + EF + PLF+Q+A+C+
Sbjct: 239 EKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCV 298
Query: 400 NSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRK 459
+S HFQVAERAL+ WNN++I +LI N ILPI FP+L +N++ HWN+ +H L N K
Sbjct: 299 SSPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALK 358
Query: 460 IFFDLDPELFKECLAKFR 477
+F + + +LF +C +F+
Sbjct: 359 LFXEXNQKLFDDCTQQFK 376
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/353 (59%), Positives = 272/353 (77%), Gaps = 3/353 (0%)
Query: 93 LKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNE 151
++DVP A+++ LFI+KL CCV+FDF +DP +LK KE+KR L E+V+Y+T E
Sbjct: 42 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITE 101
Query: 152 TVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVAS 211
+ E V M + N+FRTL P N D EE+EP ++ AWPHLQLVYEF LRF+ S
Sbjct: 102 PIYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLES 159
Query: 212 PETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNI 271
P+ +AK+YIDQ F+L+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNI
Sbjct: 160 PDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219
Query: 272 FYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQL 331
FYRFI+ETE HNGIAE LEILGSIINGFALPLKEEHK+FL++VL+PLHK KSL++YH QL
Sbjct: 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 279
Query: 332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPL 391
+YC+ QF+EKD L + V+ LLKYWP T+S KEVMFLNELEE+L+ + EF + M PL
Sbjct: 280 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 339
Query: 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARN 444
F+Q+A+C++S HFQVAERAL+ WNN++I +LI N ILPI+FP+L +N++
Sbjct: 340 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392
>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
Length = 486
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 435 FPALE-KNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARRE 491
F AL+ +N R W+ + H+LT+ K+FF +P+L CL++ + E G + R+E
Sbjct: 400 FYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKL---CLSEIHKMEEVSG-TKGRQE 453
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 435 FPALE-KNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARRE 491
F AL+ +N R W+ + H+LT+ K+FF +P+L CL++ + E G + R+E
Sbjct: 400 FYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKL---CLSEIHKMEEVSG-TKGRQE 453
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 435 FPALE-KNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARRE 491
F AL+ +N R W+ + H+LT+ K+FF +P+L CL++ + E G + R+E
Sbjct: 400 FYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKL---CLSEIHKMEEVSG-TKGRQE 453
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 435 FPALE-KNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARRE 491
F AL+ +N R W+ + H+LT+ K+FF +P+L CL++ + E G + R+E
Sbjct: 400 FYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKL---CLSEIHKMEEVSG-TKGRQE 453
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 36/144 (25%)
Query: 137 ELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWP 196
E D VT N TVMQEA++ LF L+P+
Sbjct: 391 EAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPR------------------------ 426
Query: 197 HLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTIL-----H 251
HL+++Y+ F+ +AK++ +L + + + P ER+ L H
Sbjct: 427 HLEIIYDINWFFLED------VAKKFPKDVDLLSRISIIEENSP-ERQIRMAFLAIVGSH 479
Query: 252 RIYGKFMVHRPFIRKAINNIFYRF 275
++ G +H I+ I F +F
Sbjct: 480 KVNGVVELHSELIKTTIFKDFIKF 503
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 523
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 411 LFLWNNDHIENLIIQNRKVILP 432
LFLW++ +E L+ NRKV++P
Sbjct: 144 LFLWDSKELEQLVEFNRKVVIP 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,323,377
Number of Sequences: 62578
Number of extensions: 581152
Number of successful extensions: 1453
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 14
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)