Query 009829
Match_columns 524
No_of_seqs 164 out of 307
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 17:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 2E-165 5E-170 1269.3 39.0 418 84-505 39-456 (457)
2 PF01603 B56: Protein phosphat 100.0 1E-131 3E-136 1044.2 29.1 407 89-502 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 1.1E-39 2.4E-44 307.9 13.7 134 340-506 35-168 (170)
4 PLN00122 serine/threonine prot 97.4 0.00083 1.8E-08 64.5 8.9 32 78-109 36-67 (170)
5 PF01602 Adaptin_N: Adaptin N 90.9 2.4 5.3E-05 45.8 11.9 176 227-415 340-520 (526)
6 PF12348 CLASP_N: CLASP N term 76.9 30 0.00064 33.5 11.0 104 360-466 19-126 (228)
7 KOG1060 Vesicle coat complex A 73.9 57 0.0012 38.8 13.5 156 302-477 316-472 (968)
8 PF05918 API5: Apoptosis inhib 68.3 1.8E+02 0.0038 33.4 15.7 126 290-415 196-341 (556)
9 PF01417 ENTH: ENTH domain; I 55.9 49 0.0011 29.7 7.2 91 372-463 24-121 (125)
10 PF14500 MMS19_N: Dos2-interac 52.8 1.2E+02 0.0026 31.1 10.3 77 327-410 120-209 (262)
11 KOG2175 Protein predicted to b 51.1 2.6E+02 0.0056 31.4 12.9 152 299-474 80-253 (458)
12 PF04388 Hamartin: Hamartin pr 49.3 3.6E+02 0.0078 31.5 14.5 58 228-295 6-63 (668)
13 cd03572 ENTH_epsin_related ENT 49.1 94 0.002 28.6 7.9 85 369-463 22-119 (122)
14 KOG2171 Karyopherin (importin) 42.5 1.9E+02 0.0041 35.6 11.0 235 216-463 105-418 (1075)
15 KOG0213 Splicing factor 3b, su 41.8 2.2E+02 0.0049 34.1 11.0 289 158-474 569-905 (1172)
16 PF15611 EH_Signature: EH_Sign 41.6 1.7E+02 0.0037 30.9 9.6 94 380-500 185-280 (389)
17 PF08389 Xpo1: Exportin 1-like 40.8 2E+02 0.0044 25.2 8.7 104 344-460 7-112 (148)
18 PF12783 Sec7_N: Guanine nucle 38.5 2.7E+02 0.0059 25.9 9.6 110 366-479 40-161 (168)
19 cd07920 Pumilio Pumilio-family 35.6 4.9E+02 0.011 26.4 14.4 69 343-413 142-211 (322)
20 PF06757 Ins_allergen_rp: Inse 31.7 2.9E+02 0.0063 26.4 8.7 56 368-425 103-164 (179)
21 cd03571 ENTH_epsin ENTH domain 30.9 1.2E+02 0.0026 27.8 5.6 86 372-464 22-119 (123)
22 cd08324 CARD_NOD1_CARD4 Caspas 30.8 34 0.00073 29.8 1.9 39 226-264 46-84 (85)
23 smart00582 RPR domain present 30.8 80 0.0017 27.7 4.4 74 343-416 27-107 (121)
24 PF01602 Adaptin_N: Adaptin N 30.3 7.3E+02 0.016 26.8 18.3 239 199-464 246-485 (526)
25 PF04802 SMK-1: Component of I 30.2 1.3E+02 0.0028 29.8 6.1 91 223-329 2-101 (193)
26 cd07920 Pumilio Pumilio-family 30.2 5.7E+02 0.012 25.9 11.1 21 223-246 92-112 (322)
27 PF12755 Vac14_Fab1_bd: Vacuol 29.5 2.5E+02 0.0054 24.6 7.1 71 382-462 23-96 (97)
28 cd03567 VHS_GGA VHS domain fam 28.6 4.9E+02 0.011 24.3 9.4 81 333-413 23-110 (139)
29 PF10508 Proteasom_PSMB: Prote 27.6 7.2E+02 0.016 27.8 12.1 106 389-502 118-231 (503)
30 PF14911 MMS22L_C: S-phase gen 27.0 8.6E+02 0.019 26.6 14.1 134 358-500 224-371 (373)
31 PTZ00429 beta-adaptin; Provisi 26.6 1.2E+03 0.025 28.0 16.3 208 198-466 5-233 (746)
32 KOG0949 Predicted helicase, DE 26.3 3.9E+02 0.0084 33.2 9.9 103 392-502 804-915 (1330)
33 KOG2274 Predicted importin 9 [ 26.0 1.2E+03 0.026 28.7 13.7 108 390-507 128-241 (1005)
34 PF12783 Sec7_N: Guanine nucle 25.7 2.4E+02 0.0051 26.3 6.8 60 264-324 70-129 (168)
35 PF03378 CAS_CSE1: CAS/CSE pro 25.6 80 0.0017 34.8 4.1 106 193-319 195-303 (435)
36 PF04499 SAPS: SIT4 phosphatas 25.3 2.9E+02 0.0062 31.0 8.4 54 200-253 34-90 (475)
37 PF12830 Nipped-B_C: Sister ch 24.6 3.1E+02 0.0068 26.4 7.6 76 387-473 5-84 (187)
38 PF12717 Cnd1: non-SMC mitotic 24.4 6.1E+02 0.013 24.0 10.8 110 384-499 19-136 (178)
39 COG5215 KAP95 Karyopherin (imp 23.6 2.7E+02 0.0059 32.5 7.7 104 390-503 263-389 (858)
40 cd03562 CID CID (CTD-Interacti 23.6 3.1E+02 0.0068 23.8 6.8 86 332-417 21-109 (114)
41 PF08167 RIX1: rRNA processing 23.1 6.4E+02 0.014 23.8 9.3 50 226-275 67-117 (165)
42 KOG0545 Aryl-hydrocarbon recep 22.7 8.1E+02 0.018 26.0 10.3 97 383-496 224-325 (329)
43 PF10274 ParcG: Parkin co-regu 22.3 7.7E+02 0.017 24.4 10.9 123 326-469 35-171 (183)
44 PF14724 mit_SMPDase: Mitochon 22.0 6.1E+02 0.013 30.4 10.4 114 347-465 371-529 (765)
45 PF12348 CLASP_N: CLASP N term 21.9 7.1E+02 0.015 23.8 14.5 177 236-415 17-202 (228)
46 KOG2021 Nuclear mRNA export fa 21.7 1.5E+03 0.033 27.6 13.6 215 224-501 231-461 (980)
47 PF13019 Telomere_Sde2: Telome 20.6 1.5E+02 0.0031 28.9 4.3 22 481-502 140-161 (162)
48 TIGR00777 ahpD alkylhydroperox 20.5 1.1E+02 0.0024 30.0 3.6 16 264-279 75-90 (177)
49 PF06901 FrpC: RTX iron-regula 20.0 82 0.0018 31.7 2.5 44 291-343 223-269 (271)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-165 Score=1269.28 Aligned_cols=418 Identities=71% Similarity=1.163 Sum_probs=412.6
Q ss_pred ccccccCCCCCCCChHHhHHHHHHHHhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 009829 84 LSSYDTLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSA 163 (524)
Q Consensus 84 ~~~l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~ 163 (524)
..++++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.+++++++|.+|+++++|+++
T Consensus 39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~ 118 (457)
T KOG2085|consen 39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV 118 (457)
T ss_pred CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHH
Q 009829 164 NLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPRER 243 (524)
Q Consensus 164 NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRER 243 (524)
||||+|||..+++ .+|+|||||++|++|||||+||++|+||++||++|+++||+||||+||++||+||||||||||
T Consensus 119 nifR~lpp~~n~~----~~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 119 NIFRTLPPSVNPT----GFDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HhhccCCcccCCC----cCCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 9999999998765 399999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCC
Q 009829 244 EYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKS 323 (524)
Q Consensus 244 d~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~ 323 (524)
|+|||+|||||||||+||+|||++||||||+||||||+|||||||||||||||||||+|||||||+||.||||||||+++
T Consensus 195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~ 274 (457)
T KOG2085|consen 195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS 274 (457)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCc
Q 009829 324 LAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLH 403 (524)
Q Consensus 324 ~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~h 403 (524)
++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||+|||||||+++|.||++||+|||+|||+|++|+|
T Consensus 275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H 354 (457)
T KOG2085|consen 275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH 354 (457)
T ss_pred ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 009829 404 FQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKE 483 (524)
Q Consensus 404 fQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~ 483 (524)
||||||||++|||+||++||++|..+|+|||||+|||++++|||++|+++++||+|+|||||+.||++|+++|++++.++
T Consensus 355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~ 434 (457)
T KOG2085|consen 355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE 434 (457)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 009829 484 GEIEARREATWKRLEELAEGNV 505 (524)
Q Consensus 484 ~~~~~kr~~~W~~l~~~A~~~~ 505 (524)
++++++|+++|++||++|..++
T Consensus 435 ~~~~~~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 435 KETEEKREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998765
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=1.2e-131 Score=1044.18 Aligned_cols=407 Identities=64% Similarity=1.086 Sum_probs=360.3
Q ss_pred cCCCCCCCChHHhHHHHHHHHhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhhcc
Q 009829 89 TLPALKDVPSAEKQNLFIKKLNLCCVVFDFTDPTKNLKEKEIKRQMLLELVDYVTSAN--GKFNETVMQEAVKMVSANLF 166 (524)
Q Consensus 89 ~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~k~Ke~Kr~tL~ELvd~v~~~~--~~lte~~~~~i~~Mis~NiF 166 (524)
+||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++||+++. +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999987 99999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHH
Q 009829 167 RTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYL 246 (524)
Q Consensus 167 R~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~L 246 (524)
|++||.+.. .+|+|||+|+.||+|||||+||++|++|++++++++ +|+|||++||.+|+++|+|+||||||+|
T Consensus 81 R~lP~~~~~-----~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~l 153 (409)
T PF01603_consen 81 RPLPPIPNP-----SFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYL 153 (409)
T ss_dssp S-----SS-------S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHH
T ss_pred CCCCCcccc-----cCCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHH
Confidence 999998753 478999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchh
Q 009829 247 KTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAM 326 (524)
Q Consensus 247 KtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~ 326 (524)
|++||||||||+++|+|||++|+++|++|+||+++|+||+|||||+|||||||++|||+||+.||.++|+|||++++++.
T Consensus 154 k~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~ 233 (409)
T PF01603_consen 154 KTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSS 233 (409)
T ss_dssp HHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGG
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHH
Q 009829 327 YHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQV 406 (524)
Q Consensus 327 Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQV 406 (524)
||+||+||++||++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|++++.|||++||+|++|+||||
T Consensus 234 y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 234 YHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp THHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHH
Q 009829 407 AERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEI 486 (524)
Q Consensus 407 AErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~ 486 (524)
|||||++|+|++|++++++|++.|+|+|+|+|++++++|||++||++|++|+++||||||++|++|+++|++++++++++
T Consensus 314 AErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~ 393 (409)
T PF01603_consen 314 AERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAR 393 (409)
T ss_dssp HHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 009829 487 EARREATWKRLEELAE 502 (524)
Q Consensus 487 ~~kr~~~W~~l~~~A~ 502 (524)
+++|+++|++|+++|+
T Consensus 394 ~~~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 394 EKKRKKKWKKIEEAAK 409 (409)
T ss_dssp SHHHHHHHTT-S----
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.1e-39 Score=307.87 Aligned_cols=134 Identities=62% Similarity=0.941 Sum_probs=130.1
Q ss_pred HhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHH
Q 009829 340 EKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHI 419 (524)
Q Consensus 340 eKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i 419 (524)
...+.++...+++|++|||++++.||.+||++| |||||||+||||||
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 356888999999999999999999999999999 99999999999999
Q ss_pred HHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009829 420 ENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEE 499 (524)
Q Consensus 420 ~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~~l~~ 499 (524)
++||.+|+.+|||||||+|++++++|||++||++++||+||||||||+||++|+++|+++++++++.+++|+++|++|++
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 009829 500 LAEGNVP 506 (524)
Q Consensus 500 ~A~~~~~ 506 (524)
+|.+++.
T Consensus 162 ~A~~~~~ 168 (170)
T PLN00122 162 AAAAKAI 168 (170)
T ss_pred HHHhccC
Confidence 9998874
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.37 E-value=0.00083 Score=64.53 Aligned_cols=32 Identities=50% Similarity=0.950 Sum_probs=30.1
Q ss_pred cCCCccccccccCCCCCCCChHHhHHHHHHHH
Q 009829 78 LNGNLVLSSYDTLPALKDVPSAEKQNLFIKKL 109 (524)
Q Consensus 78 ~~~~~~~~~l~~LP~l~dv~~~e~~~Lf~~Kl 109 (524)
.++.++...+++||+|+|||.+||++||++||
T Consensus 36 ~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 36 VNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHH
Confidence 67777889999999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.90 E-value=2.4 Score=45.81 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=113.9
Q ss_pred HHHHHhhcC-CCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHH
Q 009829 227 FILKLLDLF-DSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKE 305 (524)
Q Consensus 227 Fv~~Ll~lf-dSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 305 (524)
.+..|+..+ +..|+.=|..+-..+..+-.++...-.|.-..+-+++. ... ..-..|+...+..++... ..+++
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~----~~~-~~~~~~~~~~i~~ll~~~-~~~~~ 413 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE----ISG-DYVSNEIINVIRDLLSNN-PELRE 413 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH----CTG-GGCHCHHHHHHHHHHHHS-TTTHH
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh----hcc-ccccchHHHHHHHHhhcC-hhhhH
Confidence 344455556 55577666666666677777776666666655544443 111 122456666666666553 22333
Q ss_pred HHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcC--cHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhH
Q 009829 306 EHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCK--LADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPE 383 (524)
Q Consensus 306 EHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~--L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~e 383 (524)
.- .+.|+-+...-.....-.-.++|+-+|.+..+. .+..+++.++..|...+..=+...|..+..+....+.++
T Consensus 414 ~~----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~ 489 (526)
T PF01602_consen 414 KI----LKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE 489 (526)
T ss_dssp HH----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT
T ss_pred HH----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh
Confidence 22 222332222234445677889999999888877 888999999999988887777788888888887766655
Q ss_pred HHHhhHHHHHHHHHHhC--CCcHHHHHHHHhhhc
Q 009829 384 FQRCMVPLFQQIARCLN--SLHFQVAERALFLWN 415 (524)
Q Consensus 384 f~~i~~pLF~~la~Ci~--S~hfQVAErAL~lWn 415 (524)
..+ .+...+.++.. |.++.|-+||.++|.
T Consensus 490 ~~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 490 VQN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 544 35555666667 999999999999985
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=76.94 E-value=30 Score=33.45 Aligned_cols=104 Identities=17% Similarity=0.281 Sum_probs=65.1
Q ss_pred CCChhHHHHHHHHHHHHhhC----ChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccch
Q 009829 360 TNSSKEVMFLNELEEVLEAT----QLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIF 435 (524)
Q Consensus 360 tns~KEv~FL~EleeiLe~~----~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~ 435 (524)
.+=.+.+-=|..|..++..- .+..|...+..+...|+.|+.+...+|+-.|+.++. .+...+...-...+..++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~--~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLS--DLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHH--HHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHhHhHHHHHHHHH
Confidence 34455566677888887655 234444444455569999999999999999998876 344445555555577788
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhCH
Q 009829 436 PALEKNARNHWNQAVHSLTLNVRKIFFDLDP 466 (524)
Q Consensus 436 p~L~~~s~~HWn~~V~~la~nvlkil~e~D~ 466 (524)
|.|.+..... ++.|+..|.+++..+.+.-+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 8887665433 88999999999999888776
No 7
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.90 E-value=57 Score=38.78 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhh-CC
Q 009829 302 PLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEA-TQ 380 (524)
Q Consensus 302 PLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~-~~ 380 (524)
|.-+.|+. .+.|+-|...+.-..| -+..||-++..|+|+|.++.++ +|.=.+.-+-++--|. |+ ||.. .+
T Consensus 316 P~~~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lK---sFfv~ssDp~~vk~lK-le-iLs~La~ 386 (968)
T KOG1060|consen 316 PKNQVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLK---SFFVRSSDPTQVKILK-LE-ILSNLAN 386 (968)
T ss_pred CHHHHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhh---ceEeecCCHHHHHHHH-HH-HHHHHhh
Confidence 44455554 7888888877777777 4778999999999999998776 4555555555555442 22 3332 23
Q ss_pred hhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHH
Q 009829 381 LPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKI 460 (524)
Q Consensus 381 p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlki 460 (524)
..... -+|+-+-.-|.|+|++||-.|..- ++....+...+-+-.+..|....++| +..|..-+.+|+|+
T Consensus 387 esni~----~ILrE~q~YI~s~d~~faa~aV~A------iGrCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk~ 455 (968)
T KOG1060|consen 387 ESNIS----EILRELQTYIKSSDRSFAAAAVKA------IGRCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIKR 455 (968)
T ss_pred hccHH----HHHHHHHHHHhcCchhHHHHHHHH------HHHHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHHH
Confidence 33333 367888888999999998877643 33444555555566678888888889 99999999999999
Q ss_pred HHhhCHHHHHHHHHHHH
Q 009829 461 FFDLDPELFKECLAKFR 477 (524)
Q Consensus 461 l~e~D~~lf~~~~~~~~ 477 (524)
|..+||.--.+...++.
T Consensus 456 Llq~~p~~h~~ii~~La 472 (968)
T KOG1060|consen 456 LLQKDPAEHLEILFQLA 472 (968)
T ss_pred HHhhChHHHHHHHHHHH
Confidence 99999988777665443
No 8
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=68.28 E-value=1.8e+02 Score=33.44 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=70.8
Q ss_pred HHHHHHhcccCC---CCHHHHHHHHHHHhh---cCCCC--CCchhchHHHHHHHHH---HHHhCcCc---HHHHHHHhhh
Q 009829 290 EILGSIINGFAL---PLKEEHKVFLVRVLI---PLHKP--KSLAMYHQQLSYCITQ---FVEKDCKL---ADAVIRGLLK 355 (524)
Q Consensus 290 eIlgSIInGFal---PLKeEHk~FL~rvLi---PLHk~--k~~~~Yh~qL~yCi~q---FveKDp~L---~~~vi~gLLk 355 (524)
+++-+|.+.+.+ .=-.+..+.|..++. =|-.+ .+-...-.+|.+|+.+ |+.+...- ...+.+.+|-
T Consensus 196 ~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP 275 (556)
T PF05918_consen 196 ELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLP 275 (556)
T ss_dssp HHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCC
T ss_pred HHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcC
Confidence 344455555433 112455555555544 23322 1123455678889888 66665544 4445555565
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHh------CCCcHHHHHHHHhhhc
Q 009829 356 YWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCL------NSLHFQVAERALFLWN 415 (524)
Q Consensus 356 ~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci------~S~hfQVAErAL~lWn 415 (524)
.|=......++-+|.-+.|+...+.+.+...++.++|..|-.++ .+.+|-..|..||.+-
T Consensus 276 ~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh 341 (556)
T PF05918_consen 276 KLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFH 341 (556)
T ss_dssp CTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHH
T ss_pred ChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHH
Confidence 55556668899999999999999988888899999999996554 3456777788777653
No 9
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=55.94 E-value=49 Score=29.68 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=60.3
Q ss_pred HHHHHhhC-ChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chHHHHHHHhccccccccchHHHHHHhhh
Q 009829 372 LEEVLEAT-QLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN------NDHIENLIIQNRKVILPIIFPALEKNARN 444 (524)
Q Consensus 372 leeiLe~~-~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn------Ne~i~~li~~n~~~I~Pii~p~L~~~s~~ 444 (524)
+.+|...+ +..++..||.-|.+||.. ....+..+.-.||.+.. ++.|+.-+.++...|-...--......-.
T Consensus 24 l~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 34555555 558898888888888743 35577788888887753 56777777767666544321111111223
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 009829 445 HWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 445 HWn~~V~~la~nvlkil~e 463 (524)
.|...||..|..++.+|.|
T Consensus 103 d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 103 DQGQNVREKAKEILELLND 121 (125)
T ss_dssp BHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 6899999999999999976
No 10
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=52.80 E-value=1.2e+02 Score=31.13 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHH--HhCcC---cHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHH-------H-hhHHHHH
Q 009829 327 YHQQLSYCITQFV--EKDCK---LADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQ-------R-CMVPLFQ 393 (524)
Q Consensus 327 Yh~qL~yCi~qFv--eKDp~---L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~-------~-i~~pLF~ 393 (524)
....+.+.+++.+ ||||. ++-.+++.+++.||. . -|..|+-+++..-=|-.|. . -..-|=.
T Consensus 120 ~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~ 193 (262)
T PF14500_consen 120 MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKR 193 (262)
T ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHH
Confidence 3456677777776 89995 456788999999995 2 3455555666531222222 1 1245778
Q ss_pred HHHHHhCCCcHHHHHHH
Q 009829 394 QIARCLNSLHFQVAERA 410 (524)
Q Consensus 394 ~la~Ci~S~hfQVAErA 410 (524)
.|-.|+.|.+ ..|+-|
T Consensus 194 ~L~~cl~s~~-~fa~~~ 209 (262)
T PF14500_consen 194 ALRNCLSSTP-LFAPFA 209 (262)
T ss_pred HHHHHhcCcH-hhHHHH
Confidence 8899999755 445443
No 11
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=51.10 E-value=2.6e+02 Score=31.43 Aligned_cols=152 Identities=24% Similarity=0.361 Sum_probs=92.1
Q ss_pred cCCCCHHHHHHHHHH-----HhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHH-HHHHHhhhcCCCCCChhHHHHHHHH
Q 009829 299 FALPLKEEHKVFLVR-----VLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLAD-AVIRGLLKYWPVTNSSKEVMFLNEL 372 (524)
Q Consensus 299 FalPLKeEHk~FL~r-----vLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~-~vi~gLLk~WP~tns~KEv~FL~El 372 (524)
++.|=-.-|+.|+.. ..+|.-.|.-+..-|+- -.+|| -||-.|++ .+++. +..|.--.++|.++.
T Consensus 80 p~~~~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt---~r~q~-l~d~vl~~~~~~~~-----a~~~~l~s~i~~~~~ 150 (458)
T KOG2175|consen 80 PAVPQSKKHREFLSLLAKFKEVIPISDPELLAKIHQT---FRVQY-LKDVVLPEPGVFDE-----ATGNTLNSFIFFNKV 150 (458)
T ss_pred ccCCChhhhHHHHHhhccceeeeecCCHHHHHHHHHH---HHHHH-hheeeecCCcchhc-----chhHHHHHHHHHhhh
Confidence 555544449999864 35555555544444532 12333 34444442 11111 123444566777777
Q ss_pred HHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHH---------------HHHHHHhhhcchHH-HHHHHhccccccccchH
Q 009829 373 EEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQ---------------VAERALFLWNNDHI-ENLIIQNRKVILPIIFP 436 (524)
Q Consensus 373 eeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQ---------------VAErAL~lWnNe~i-~~li~~n~~~I~Pii~p 436 (524)
+ |++.++.+++- +.+||.++. ++.-- +.-++|..|....| ..++... |++
T Consensus 151 ~-ii~~lqed~~~--l~eLf~~l~----~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~-------i~~ 216 (458)
T KOG2175|consen 151 N-IVSLLQEDEKF--LIELFARLR----SESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKG-------ILD 216 (458)
T ss_pred h-hhhhhhcCchH--HHHHHHHhc----CCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhh-------hHH
Confidence 6 66666666554 566777653 22222 23366777777763 3344333 678
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 009829 437 ALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLA 474 (524)
Q Consensus 437 ~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~ 474 (524)
++....+.- +..+|..+..++..+.|++|.+..+-+.
T Consensus 217 ~le~~~~~~-d~~~r~~~~di~~~~ve~~~~~i~~~~~ 253 (458)
T KOG2175|consen 217 ALEYVLKMP-DTQVRSAATDILARLVEMSPSMIRSFTL 253 (458)
T ss_pred HHHHHhcCC-cchhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777766 8899999999999999999999988764
No 12
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=49.35 E-value=3.6e+02 Score=31.53 Aligned_cols=58 Identities=28% Similarity=0.420 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHH
Q 009829 228 ILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSI 295 (524)
Q Consensus 228 v~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSI 295 (524)
|.+|+.+++|.|..+.+.+|..+++..+. ..-+|+- |.+..|..+| |-.-.++||.++
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~----~~l~~y~~~t----~s~~~~~il~~~ 63 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLV----NGLVDYYLST----NSQRALEILVGV 63 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHH----HHHHHHHhhc----CcHHHHHHHHhc
Confidence 67899999999999999999999998875 3335553 4445555555 445577777543
No 13
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=49.05 E-value=94 Score=28.65 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhh------cchHHHHHHHhccccccccchHHHH-HH
Q 009829 369 LNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLW------NNDHIENLIIQNRKVILPIIFPALE-KN 441 (524)
Q Consensus 369 L~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lW------nNe~i~~li~~n~~~I~Pii~p~L~-~~ 441 (524)
++||.++.-. ++.+|..++.-|.++|.+ .|+|-+ -.||.+. -++.|+..+.+|...| -.+. ..
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK--~K~Lrilk~l~~~G~~~f~~~~~~~~~~I-----k~~~~f~ 91 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVK--LKVLKIIKHLCEKGNSDFKRELQRNSAQI-----RECANYK 91 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcch--HHHHHHHHHHHhhCCHHHHHHHHHhHHHH-----HHHHHcC
Confidence 5566666554 788999999999999997 778863 3344333 3578888888886544 2221 11
Q ss_pred ------hhhhhhHHHHHHHHHHHHHHHh
Q 009829 442 ------ARNHWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 442 ------s~~HWn~~V~~la~nvlkil~e 463 (524)
.-.-+++.||.-|..+++++..
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 1135789999999988887754
No 14
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.48 E-value=1.9e+02 Score=35.61 Aligned_cols=235 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHhhccCCH---HHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHH
Q 009829 216 AKLAKRYIDQ---SFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEIL 292 (524)
Q Consensus 216 ~k~ak~~Id~---~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIl 292 (524)
+.+|++-+|- ..+.-|+.-..|+|+..|+.---||..+-.-|...-.---..+-.+|.+-+-+....--|+-+=-
T Consensus 105 Aeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA-- 182 (1075)
T KOG2171|consen 105 AEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRA-- 182 (1075)
T ss_pred HHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHH--
Q ss_pred HHHhcccCCCC---HHHHHHHHHHHhhc--CCCCCCchhchHH-----HHHHHHHHHHhCcCcHH---------------
Q 009829 293 GSIINGFALPL---KEEHKVFLVRVLIP--LHKPKSLAMYHQQ-----LSYCITQFVEKDCKLAD--------------- 347 (524)
Q Consensus 293 gSIInGFalPL---KeEHk~FL~rvLiP--LHk~k~~~~Yh~q-----L~yCi~qFveKDp~L~~--------------- 347 (524)
..+|+.=+ |.+++.| +.++| |+-.+.+..+... ...|.+.|++-+|++..
T Consensus 183 ---~~a~~~~~~~~~~~~~~~--~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 183 ---LGAFAEYLENNKSEVDKF--RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAK 257 (1075)
T ss_pred ---HHHHHHHhccchHHHHHH--HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q ss_pred -------------HHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHH-----------------------------
Q 009829 348 -------------AVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQ----------------------------- 385 (524)
Q Consensus 348 -------------~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~----------------------------- 385 (524)
.+|-.+.+|=|..+-.-.- ++..|-.++-.+-++.-.
T Consensus 258 n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrl 336 (1075)
T KOG2171|consen 258 NKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRL 336 (1075)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHH
Q ss_pred -------HhhHHHHHHHHHHhCCCcHHHHHHHHhhhc--chHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHH
Q 009829 386 -------RCMVPLFQQIARCLNSLHFQVAERALFLWN--NDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLN 456 (524)
Q Consensus 386 -------~i~~pLF~~la~Ci~S~hfQVAErAL~lWn--Ne~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~n 456 (524)
.+..|+|..+-.-+.|+.-+-=.+||.-.. -|..-..|..+-..|+|++.+.|... ++.||..|+|
T Consensus 337 A~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp-----hprVr~AA~n 411 (1075)
T KOG2171|consen 337 ALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP-----HPRVRYAALN 411 (1075)
T ss_pred HhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC-----CHHHHHHHHH
Q ss_pred HHHHHHh
Q 009829 457 VRKIFFD 463 (524)
Q Consensus 457 vlkil~e 463 (524)
++-.+..
T Consensus 412 aigQ~st 418 (1075)
T KOG2171|consen 412 AIGQMST 418 (1075)
T ss_pred HHHhhhh
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=41.84 E-value=2.2e+02 Score=34.08 Aligned_cols=289 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc----hHHHHHHHHHHHhc--CCcCChHHhhccCCHHHHHHH
Q 009829 158 VKMVSANLFRTLIPQPRENKIVDGVDLEEEEPAMDPAWP----HLQLVYEFLLRFVA--SPETDAKLAKRYIDQSFILKL 231 (524)
Q Consensus 158 ~~Mis~NiFR~lPp~~~~~~~~~~~d~eedep~~epaWp----HLqlVYeillrfv~--s~~~d~k~ak~~Id~~Fv~~L 231 (524)
++|+.+|..-.+-....+.++ +.|| -++.|-|. |-+.+..-||+-+- -|..|+..|- |.+..-++.|
T Consensus 569 VR~itAlalsalaeaa~Pygi-e~fD-----sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~-yyTrevmlil 641 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATPYGI-EQFD-----SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS-YYTREVMLIL 641 (1172)
T ss_pred hhhHHHHHHHHHHHhcCCcch-HHHH-----HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH-HhHHHHHHHH
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhcccccc----------CHHHHHHHHHH--Hhccc
Q 009829 232 LDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHN----------GIAEFLEILGS--IINGF 299 (524)
Q Consensus 232 l~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hn----------GIaELLeIlgS--IInGF 299 (524)
+.-|+|+|..=...+-.++.++-++--.--.|||..|---|+..-...+.-- -.-|+-.=+|+ ||+--
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~ 721 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV 721 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHH
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHh------CcCcHHHHHHHhhhcCCCCCChhHHHHHHH--
Q 009829 300 ALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEK------DCKLADAVIRGLLKYWPVTNSSKEVMFLNE-- 371 (524)
Q Consensus 300 alPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveK------Dp~L~~~vi~gLLk~WP~tns~KEv~FL~E-- 371 (524)
-.+||.|-.+ |...-.-.+.--+.. |.+|-+..|+||+--.-...+.--|||++.
T Consensus 722 v~~lkde~e~-----------------yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 722 VLDLKDEPEQ-----------------YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred hhhhccccHH-----------------HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Q ss_pred ----------------HHHHHhhC--ChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhcccccccc
Q 009829 372 ----------------LEEVLEAT--QLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPI 433 (524)
Q Consensus 372 ----------------leeiLe~~--~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pi 433 (524)
+.+||-.+ .+.....=.-.|..+||.-+...| |-.+.=--+--+..-+-+--..++|.
T Consensus 785 V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~----ee~~m~~lGvvLyEylgeeypEvLgs 860 (1172)
T KOG0213|consen 785 VVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG----EEKLMGHLGVVLYEYLGEEYPEVLGS 860 (1172)
T ss_pred HHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc----HHHHHHHhhHHHHHhcCcccHHHHHH
Q ss_pred chHHHHHHhhhh----hhHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 009829 434 IFPALEKNARNH----WNQAVHSLTLNVRKIFFDLDPELFKECLA 474 (524)
Q Consensus 434 i~p~L~~~s~~H----Wn~~V~~la~nvlkil~e~D~~lf~~~~~ 474 (524)
|+.+|.....-| --+.++.+.=...-||..--.++-..|..
T Consensus 861 ILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~Id 905 (1172)
T KOG0213|consen 861 ILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCID 905 (1172)
T ss_pred HHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHH
No 16
>PF15611 EH_Signature: EH_Signature domain
Probab=41.59 E-value=1.7e+02 Score=30.85 Aligned_cols=94 Identities=18% Similarity=0.370 Sum_probs=60.9
Q ss_pred ChhHHHHhhHHHHHHHHHHh-C-CCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHH
Q 009829 380 QLPEFQRCMVPLFQQIARCL-N-SLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNV 457 (524)
Q Consensus 380 ~p~ef~~i~~pLF~~la~Ci-~-S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nv 457 (524)
.++....++.-+..++..|. . ..|-++-+.++.+|.|+++ ......|...=-....-|
T Consensus 185 ~~~~~~~~~~~lL~~~~~~~~~~~~~~~l~~~~l~~~GdPr~--------------------~~~~~~W~~v~e~a~~~v 244 (389)
T PF15611_consen 185 RPEQRKRALEALLERYIDRSPDEPVHEALRDLLLAIWGDPRL--------------------PSSQPNWSGVSEEARQMV 244 (389)
T ss_pred chhHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCCC--------------------CccccchhhcCHHHHHHH
Confidence 34445555566666666554 2 2566677777777777665 111122887444555667
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009829 458 RKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEEL 500 (524)
Q Consensus 458 lkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~~l~~~ 500 (524)
+.-|..-|=.+|-+....+.. +...|..-|.+..+.
T Consensus 245 ~~Wl~~~dL~~Ff~~l~~~~~-------~~~~R~~FW~~y~~~ 280 (389)
T PF15611_consen 245 RRWLSKEDLELFFDLLSQDGD-------MDPRRKNFWLRYLDQ 280 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-------cchHHHHHHHHHHHH
Confidence 788888897777776654332 567889999999887
No 17
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.77 E-value=2e+02 Score=25.21 Aligned_cols=104 Identities=17% Similarity=0.290 Sum_probs=52.8
Q ss_pred CcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCC-CcHHH-HHHHHhhhcchHHHH
Q 009829 344 KLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNS-LHFQV-AERALFLWNNDHIEN 421 (524)
Q Consensus 344 ~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S-~hfQV-AErAL~lWnNe~i~~ 421 (524)
+|+..+.....+.||-..+. |+.++-..+.. ++..... ..-+++.+..=+.+ .+-.+ .+| ...+..
T Consensus 7 kl~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~~~-~L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~ 74 (148)
T PF08389_consen 7 KLAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHLEL-VLRILRILPEEITDFRRSSLSQER------RRELKD 74 (148)
T ss_dssp HHHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHHHH-HHHHHHHHHHHHHTSHCCHSHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHHHH-HHHHHHHHHHHHHhhhchhhhHHH------HHHHHH
Confidence 35566777788888888876 66666666554 3333332 22344444433332 11111 122 455666
Q ss_pred HHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHH
Q 009829 422 LIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKI 460 (524)
Q Consensus 422 li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlki 460 (524)
.+.++...|+.++...|......++ ..+...+..+++-
T Consensus 75 ~l~~~~~~i~~~l~~~l~~~~~~~~-~~~~~~~L~~l~s 112 (148)
T PF08389_consen 75 ALRSNSPDILEILSQILSQSSSEAN-EELVKAALKCLKS 112 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHH
Confidence 7777755555544444444443332 4444444444443
No 18
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=38.52 E-value=2.7e+02 Score=25.90 Aligned_cols=110 Identities=18% Similarity=0.322 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhC-----Ch---hHHHHh-hHHHHHHHHHHhCCCcHHHHHHHHhhhcc--hHHHHHHHhccccccccc
Q 009829 366 VMFLNELEEVLEAT-----QL---PEFQRC-MVPLFQQIARCLNSLHFQVAERALFLWNN--DHIENLIIQNRKVILPII 434 (524)
Q Consensus 366 v~FL~EleeiLe~~-----~p---~ef~~i-~~pLF~~la~Ci~S~hfQVAErAL~lWnN--e~i~~li~~n~~~I~Pii 434 (524)
++=|.-|+.+|+.- .. ..|..+ ...++..|.+++.+.+++|.++++.+.-+ .++...++.-.+++++.+
T Consensus 40 ~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i 119 (168)
T PF12783_consen 40 LLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHI 119 (168)
T ss_pred HHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466667777642 11 244443 47899999999999999999999865432 345555555566677766
Q ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 009829 435 FPALEKNAR-NHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREY 479 (524)
Q Consensus 435 ~p~L~~~s~-~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~ 479 (524)
+-.+..... .-| -|.++..+++-+-. ||.+.-+.-.+|..+
T Consensus 120 ~~~il~~~~~~~~---~k~~~Le~l~~l~~-~p~~l~~lf~NYDCd 161 (168)
T PF12783_consen 120 ILRILESDNSSLW---QKELALEILRELCK-DPQFLVDLFVNYDCD 161 (168)
T ss_pred HHHHHccCCCcHH---HHHHHHHHHHHHHh-ChhHHHHHHHHcCCC
Confidence 664443333 245 56667777777664 788877776666544
No 19
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=35.56 E-value=4.9e+02 Score=26.40 Aligned_cols=69 Identities=9% Similarity=0.005 Sum_probs=35.0
Q ss_pred cCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcH-HHHHHHHhh
Q 009829 343 CKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHF-QVAERALFL 413 (524)
Q Consensus 343 p~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hf-QVAErAL~l 413 (524)
++-...+++.+..+|..-...|--. .-++.+++..++++...++.-+...+...+..++- -|..++|..
T Consensus 142 ~~~~~~i~~~l~~~~~~l~~~~~G~--~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~ 211 (322)
T cd07920 142 PEDLQFIIDAFKGNCVALSTHPYGC--RVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLEL 211 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccc--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhc
Confidence 4444555566655554332222111 12556666666667666666666555555544433 355555444
No 20
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=31.73 E-value=2.9e+02 Score=26.43 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhCChhHHHHhh------HHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHh
Q 009829 368 FLNELEEVLEATQLPEFQRCM------VPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQ 425 (524)
Q Consensus 368 FL~EleeiLe~~~p~ef~~i~------~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~ 425 (524)
+=+-+.+++..++-+++.... .+.|+.+-+.+.|+.||..-.+ +|+|+.+.+++..
T Consensus 103 ~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 103 LNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 345555666666677766543 6799999999999999966655 6899999888764
No 21
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=30.90 E-value=1.2e+02 Score=27.79 Aligned_cols=86 Identities=19% Similarity=0.245 Sum_probs=57.0
Q ss_pred HHHHHhhC-ChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chHHHHHHHhccccccccchHHHH-----
Q 009829 372 LEEVLEAT-QLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN------NDHIENLIIQNRKVILPIIFPALE----- 439 (524)
Q Consensus 372 leeiLe~~-~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn------Ne~i~~li~~n~~~I~Pii~p~L~----- 439 (524)
+.+|...+ +..+|..||.-|.+||... ..+-...-.||.+.. .+.++.-+.+|...| ..|.
T Consensus 22 m~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i-----~~L~~F~~~ 94 (123)
T cd03571 22 MAEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYII-----RTLKDFQYI 94 (123)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHH-----Hhhccceee
Confidence 34455544 6789999999999998865 456777778886653 244444444553332 3331
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh
Q 009829 440 KNARNHWNQAVHSLTLNVRKIFFDL 464 (524)
Q Consensus 440 ~~s~~HWn~~V~~la~nvlkil~e~ 464 (524)
......|-..||..|.+++.+++|=
T Consensus 95 d~~g~d~G~~VR~ka~~i~~Ll~D~ 119 (123)
T cd03571 95 DENGKDQGINVREKAKEILELLEDD 119 (123)
T ss_pred CCCCCchhHHHHHHHHHHHHHhCCH
Confidence 1112269999999999999999763
No 22
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=30.85 E-value=34 Score=29.82 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHH
Q 009829 226 SFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFI 264 (524)
Q Consensus 226 ~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fI 264 (524)
.=+.+|+++..|--....++...+|+..|.-|..+|||+
T Consensus 46 dkmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 46 DKVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 345669999999999999999999999999999999985
No 23
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=30.80 E-value=80 Score=27.73 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=46.7
Q ss_pred cCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCCh---h----HHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 009829 343 CKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQL---P----EFQRCMVPLFQQIARCLNSLHFQVAERALFLWN 415 (524)
Q Consensus 343 p~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p---~----ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn 415 (524)
..-+..++..+.++=..+.+.+-+-.|.-+.+|+-.... . .|.++....|..+.......+-+-..+-+.+|.
T Consensus 27 ~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~ 106 (121)
T smart00582 27 ASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWE 106 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 334445555555555566666778888888888865421 2 344455556666665554456666778889998
Q ss_pred c
Q 009829 416 N 416 (524)
Q Consensus 416 N 416 (524)
.
T Consensus 107 ~ 107 (121)
T smart00582 107 E 107 (121)
T ss_pred c
Confidence 5
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=30.34 E-value=7.3e+02 Score=26.84 Aligned_cols=239 Identities=18% Similarity=0.192 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhc
Q 009829 199 QLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFE 278 (524)
Q Consensus 199 qlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyE 278 (524)
.++|+...-++.-++..+ .-..++..|+.++.+.|+.=|-..-..|+.|-.+. .+.+...-..+| ..-++
T Consensus 246 ~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~-~l~~~ 315 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILF-FLLYD 315 (526)
T ss_dssp HHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHH-HHHCS
T ss_pred HHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhh-eecCC
Confidence 456666555553222111 22346777888888999887776666666665543 344442111111 11112
Q ss_pred cccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCC
Q 009829 279 TERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWP 358 (524)
Q Consensus 279 te~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP 358 (524)
++ ..=-..-|+++..+.+ ++...-....|+.--+..+-..|...+...+..-.++.+.-.+++++.+++.=-
T Consensus 316 ~d-~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 316 DD-PSIRKKALDLLYKLAN-------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp SS-HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CC-hhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 21 1112345777777775 333333444444433222233488888888888888888888888887776655
Q ss_pred CCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHH
Q 009829 359 VTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPAL 438 (524)
Q Consensus 359 ~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L 438 (524)
.++..-.--.+..|..++.. .|+....+...|++.+.. -.+-. + ++..+|-=-.+...+.+ .. +.+-++..+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~-~~~~~~~~l~~L~~~l~~---~~~~~-~-~~~~~wilGEy~~~~~~-~~-~~~~~~~~l 459 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSN-NPELREKILKKLIELLED---ISSPE-A-LAAAIWILGEYGELIEN-TE-SAPDILRSL 459 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHH-STTTHHHHHHHHHHHHTS---SSSHH-H-HHHHHHHHHHHCHHHTT-TT-HHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhc-ChhhhHHHHHHHHHHHHH---hhHHH-H-HHHHHhhhcccCCcccc-cc-cHHHHHHHH
Confidence 54444333445556666655 344444444444444443 13323 3 55555553344444443 11 233334444
Q ss_pred HHHhhhhhhHHHHHHHH-HHHHHHHhh
Q 009829 439 EKNARNHWNQAVHSLTL-NVRKIFFDL 464 (524)
Q Consensus 439 ~~~s~~HWn~~V~~la~-nvlkil~e~ 464 (524)
....... +..|+..+. ...|++..-
T Consensus 460 ~~~~~~~-~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 460 IENFIEE-SPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHHHHS
T ss_pred HHhhccc-cHHHHHHHHHHHHHHHhhC
Confidence 3332211 344555444 444555443
No 25
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=30.18 E-value=1.3e+02 Score=29.76 Aligned_cols=91 Identities=29% Similarity=0.433 Sum_probs=43.7
Q ss_pred CCHHHHHHHhhcCC-CCChhHHHH---HHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcc
Q 009829 223 IDQSFILKLLDLFD-SEDPREREY---LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIING 298 (524)
Q Consensus 223 Id~~Fv~~Ll~lfd-SeDpRERd~---LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInG 298 (524)
.+..++.+|+++|+ .||..--+- |-+|.+.|.. ++.+ -++..++..+..-|+..+||- =-+
T Consensus 2 ~~~~Yi~kL~~lF~~~E~~~~~~~L~~l~~Ivk~li~--ln~~---------~i~e~llsde~i~~vvG~LEY----Dp~ 66 (193)
T PF04802_consen 2 ENENYIKKLLDLFHQCEDLEDLEGLHLLFDIVKTLIL--LNDP---------EIFEILLSDENIMDVVGILEY----DPE 66 (193)
T ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--cCCc---------hHHHHHhchHHHHHHhhhhcc----CCc
Confidence 35678899999994 333333333 3333333321 1111 112233334444455445542 112
Q ss_pred cCCCCHHHHHHHHHH-----HhhcCCCCCCchhchH
Q 009829 299 FALPLKEEHKVFLVR-----VLIPLHKPKSLAMYHQ 329 (524)
Q Consensus 299 FalPLKeEHk~FL~r-----vLiPLHk~k~~~~Yh~ 329 (524)
|.- .|..|+.||.+ -++|+..+.-....|+
T Consensus 67 ~~~-~ka~hR~fL~~~~~FkeVIpi~~~~l~~kIhq 101 (193)
T PF04802_consen 67 FPQ-PKANHREFLKEKAKFKEVIPIPDPELLSKIHQ 101 (193)
T ss_pred ccc-cccchHHHHHhCCCCceeeecCCHHHHHHHHH
Confidence 211 34578888864 3677766654444444
No 26
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=30.16 E-value=5.7e+02 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=11.5
Q ss_pred CCHHHHHHHhhcCCCCChhHHHHH
Q 009829 223 IDQSFILKLLDLFDSEDPREREYL 246 (524)
Q Consensus 223 Id~~Fv~~Ll~lfdSeDpRERd~L 246 (524)
.-...|.++++..+ +.+|+.+
T Consensus 92 ~g~~vlqkll~~~~---~~~~~~i 112 (322)
T cd07920 92 YGCRVIQKLLESIS---EEQISLL 112 (322)
T ss_pred hhHHHHHHHHHhcC---HHHHHHH
Confidence 33345666777665 4555443
No 27
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.50 E-value=2.5e+02 Score=24.57 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=45.1
Q ss_pred hHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccc---cccchHHHHHHhhhhhhHHHHHHHHHHH
Q 009829 382 PEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVI---LPIIFPALEKNARNHWNQAVHSLTLNVR 458 (524)
Q Consensus 382 ~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I---~Pii~p~L~~~s~~HWn~~V~~la~nvl 458 (524)
..+..++.|+ -.|++.++.+|-..|..- +.++.+..+..+ |+-||++|.+... -=++.||+.|.-+-
T Consensus 23 ~~l~~Il~pV----L~~~~D~d~rVRy~AcEa-----L~ni~k~~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a~~Ld 92 (97)
T PF12755_consen 23 KYLDEILPPV----LKCFDDQDSRVRYYACEA-----LYNISKVARGEILPYFNEIFDALCKLSA-DPDENVRSAAELLD 92 (97)
T ss_pred HHHHHHHHHH----HHHcCCCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHH
Confidence 3444555554 479999999998888743 334444333344 5667788877654 33677888777666
Q ss_pred HHHH
Q 009829 459 KIFF 462 (524)
Q Consensus 459 kil~ 462 (524)
++|.
T Consensus 93 ~llk 96 (97)
T PF12755_consen 93 RLLK 96 (97)
T ss_pred HHhc
Confidence 6554
No 28
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.61 E-value=4.9e+02 Score=24.29 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=58.8
Q ss_pred HHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhh-HHHHHHHHHHhC------CCcHH
Q 009829 333 YCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCM-VPLFQQIARCLN------SLHFQ 405 (524)
Q Consensus 333 yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~-~pLF~~la~Ci~------S~hfQ 405 (524)
-=|...|..++.-+...++.|.|-=-..|+.-++.-|.-||.+...+...=-..|. ..+...+.+.++ ..|..
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 34556778899999999999998888888888888898888888877654333333 344445666663 26788
Q ss_pred HHHHHHhh
Q 009829 406 VAERALFL 413 (524)
Q Consensus 406 VAErAL~l 413 (524)
|-+|.|.+
T Consensus 103 Vk~kil~l 110 (139)
T cd03567 103 VKTKIIEL 110 (139)
T ss_pred HHHHHHHH
Confidence 88888765
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=27.56 E-value=7.2e+02 Score=27.79 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhcc---cccc-ccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q 009829 389 VPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNR---KVIL-PIIFPALEKNARNHWNQAVHSLTLNVRKIFFDL 464 (524)
Q Consensus 389 ~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~---~~I~-Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~ 464 (524)
.-++..|..|+.++.-.||+.|..+..+ +..+. +.++ +-+.+.|.....+ =|..||--++.++--+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~------l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK------LASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH------HhCCchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhc
Confidence 4488999999999999999999876532 11111 1121 1125566555443 3678888888888888888
Q ss_pred CHHHHHHHHH--HHHH--HHHHhHHHHHHHHHHHHHHHHHHh
Q 009829 465 DPELFKECLA--KFRE--YESKEGEIEARREATWKRLEELAE 502 (524)
Q Consensus 465 D~~lf~~~~~--~~~~--~~~~~~~~~~kr~~~W~~l~~~A~ 502 (524)
.+++++.|.. -+.. .+-+. ..---+....+-+.++|.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE 231 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc
Confidence 8999888875 1221 11111 111123456677777776
No 30
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=27.00 E-value=8.6e+02 Score=26.63 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=67.1
Q ss_pred CCCCChhHHHHHHHHHHHH----hhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccc-----
Q 009829 358 PVTNSSKEVMFLNELEEVL----EATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRK----- 428 (524)
Q Consensus 358 P~tns~KEv~FL~EleeiL----e~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~----- 428 (524)
|..+...=+.||.++-+-+ +.......+.+..++++.+-.| +.+.+|---|..+. ..|-+++.
T Consensus 224 p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v--~e~~~~k~~a~e~l------~~mv~~~~~~~~~ 295 (373)
T PF14911_consen 224 PPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV--NEEPQVKKLATELL------QYMVESCQVGSSG 295 (373)
T ss_pred CCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc--CCCcchhHHHHHHH------HHHHHcccccCcc
Confidence 6666676677777766654 2233445666778888877766 33555555555432 22222221
Q ss_pred cccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH----HHHhHH-HHHHHHHHHHHHHHH
Q 009829 429 VILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREY----ESKEGE-IEARREATWKRLEEL 500 (524)
Q Consensus 429 ~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~----~~~~~~-~~~kr~~~W~~l~~~ 500 (524)
.+=-.+-.++..-.+.|--.. -.-.+.++.-+.++||++-..+.-...+. |.+++. ++..-++.|.|++..
T Consensus 296 ~~~~~l~s~lrsfvqk~l~~~-t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~~ 371 (373)
T PF14911_consen 296 EPREQLTSVLRSFVQKYLAHY-TYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLSH 371 (373)
T ss_pred hHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 111111122222222221100 22345667777889998887776554432 222211 112236778887653
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=26.63 E-value=1.2e+03 Score=27.97 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCcCChHHhhccCC---HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhH
Q 009829 198 LQLVYEFLLRFVASPETDAKLAKRYID---QSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYR 274 (524)
Q Consensus 198 LqlVYeillrfv~s~~~d~k~ak~~Id---~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~ 274 (524)
|.=|-|=+.+=+..+..+. +|+. ..=+..|-..++|.|.++| |.. ++|.|.++-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~----~~f~~~~kge~~ELr~~L~s~~~~~k---k~a--------------lKkvIa~mt~- 62 (746)
T PTZ00429 5 LRKARERIQRKLEETKTGS----KYFAQTRRGEGAELQNDLNGTDSYRK---KAA--------------VKRIIANMTM- 62 (746)
T ss_pred HHHHHHHHHHHhhcCCCcc----ccccccccchHHHHHHHHHCCCHHHH---HHH--------------HHHHHHHHHC-
Q ss_pred hhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhh
Q 009829 275 FIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLL 354 (524)
Q Consensus 275 fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLL 354 (524)
|. +.-..+..+|+-++.+--+.-|.-+.... .++.-++.++..++..+.||..=..++|||+-
T Consensus 63 ---------G~-DvS~LF~dVvk~~~S~d~elKKLvYLYL~-------~ya~~~pelalLaINtl~KDl~d~Np~IRaLA 125 (746)
T PTZ00429 63 ---------GR-DVSYLFVDVVKLAPSTDLELKKLVYLYVL-------STARLQPEKALLAVNTFLQDTTNSSPVVRALA 125 (746)
T ss_pred ---------CC-CchHHHHHHHHHhCCCCHHHHHHHHHHHH-------HHcccChHHHHHHHHHHHHHcCCCCHHHHHHH
Q ss_pred hcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcc---------------hHH
Q 009829 355 KYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNN---------------DHI 419 (524)
Q Consensus 355 k~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnN---------------e~i 419 (524)
|-.+..-....+..++..-|-+|+...|.-|-..|..---. +.+
T Consensus 126 ---------------------LRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L 184 (746)
T PTZ00429 126 ---------------------VRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDL 184 (746)
T ss_pred ---------------------HHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHH
Q ss_pred HHHHHhccccccccchHHHHHHhhh---hhhHHHHHHHHHHHHHHHhhCH
Q 009829 420 ENLIIQNRKVILPIIFPALEKNARN---HWNQAVHSLTLNVRKIFFDLDP 466 (524)
Q Consensus 420 ~~li~~n~~~I~Pii~p~L~~~s~~---HWn~~V~~la~nvlkil~e~D~ 466 (524)
..++.+....+.--.+-+|+..... +| ...+......+..+.++|+
T Consensus 185 ~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~E 233 (746)
T PTZ00429 185 VELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNE 233 (746)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCCh
No 32
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=26.32 E-value=3.9e+02 Score=33.21 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=59.5
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhcccccccc--------chHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q 009829 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPI--------IFPALEKNARNHWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 392 F~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pi--------i~p~L~~~s~~HWn~~V~~la~nvlkil~e 463 (524)
+.+.++-+.+.--.+...++.+ ++++=.+.|.+| |+|+ ++|++..|...|.+ ..+|..|-+-|.+
T Consensus 804 ~q~kik~~~ki~~k~Vnkqle~-~~~ys~e~i~~n---il~ll~dLkEK~~lpaicfn~dr~fc---ekla~kv~~~Le~ 876 (1330)
T KOG0949|consen 804 TQKQIKYVYKLQTKEVNKQLES-VVDYSSEYILEN---ILDLLMDLKEKNMLPAICFNTDRDFC---EKLALKVHRQLES 876 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhHhhh-cccCcHHHHHHH---HHHHHHHHHhccccchhcccchHHHH---HHHHHHHHHHHHH
Confidence 3344444444444455677777 888877777777 3332 24555555555555 4566666666666
Q ss_pred hCHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 009829 464 LDPE-LFKECLAKFREYESKEGEIEARREATWKRLEELAE 502 (524)
Q Consensus 464 ~D~~-lf~~~~~~~~~~~~~~~~~~~kr~~~W~~l~~~A~ 502 (524)
++.+ --++|..+++.. ++...+.+|.++.|.+=..+|.
T Consensus 877 ~e~Ee~k~k~m~k~kk~-~~~a~~r~Kt~e~~~k~~~~~e 915 (1330)
T KOG0949|consen 877 MEMEEKKDKLMEKMKKE-AKRARDREKTKESWIKESIAAE 915 (1330)
T ss_pred HHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhh
Confidence 6644 445576655543 3344445566778877555543
No 33
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=26.04 E-value=1.2e+03 Score=28.67 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhh--hhhHHHHHHHHHHHHHHHhhCHH
Q 009829 390 PLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARN--HWNQAVHSLTLNVRKIFFDLDPE 467 (524)
Q Consensus 390 pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~--HWn~~V~~la~nvlkil~e~D~~ 467 (524)
-||..|-+|++|.+-+-.-.||.+|+ +-.-.+..+--..+.|+.++.+++.-.- --+-+.+-.+.. -.
T Consensus 128 Elv~~i~~~l~~~n~n~i~~am~vL~-el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~---------~~ 197 (1005)
T KOG2274|consen 128 ELVPFILKLLSSGNENSIHGAMRVLA-ELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAAR---------GK 197 (1005)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHH-HHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhh---------hH
Confidence 37777888999888787778888886 3333344444566778888888876432 223232322222 46
Q ss_pred HHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhcCCCC
Q 009829 468 LFKECLAKFREYESK----EGEIEARREATWKRLEELAEGNVPI 507 (524)
Q Consensus 468 lf~~~~~~~~~~~~~----~~~~~~kr~~~W~~l~~~A~~~~~~ 507 (524)
+|.+|+.....-++. .+..-..--..|..+.....+.+-+
T Consensus 198 lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g 241 (1005)
T KOG2274|consen 198 LFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDG 241 (1005)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 788887755432222 2222333356777777776665544
No 34
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.72 E-value=2.4e+02 Score=26.32 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCc
Q 009829 264 IRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSL 324 (524)
Q Consensus 264 IRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~ 324 (524)
||..+-..+.+.+...+ ..=..-.|.|+..+++.|.--||.|-..||..++.|+-.++.-
T Consensus 70 lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~ 129 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNS 129 (168)
T ss_pred HHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 44444334444433322 2223457889999999999999999999999999988776665
No 35
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.65 E-value=80 Score=34.84 Aligned_cols=106 Identities=18% Similarity=0.356 Sum_probs=65.0
Q ss_pred CCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhH-HHHHHHHHHHHhccccCCh--HHHHHHHH
Q 009829 193 PAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPRE-REYLKTILHRIYGKFMVHR--PFIRKAIN 269 (524)
Q Consensus 193 paWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRE-Rd~LKtiLHrIYgKf~~~R--~fIRk~In 269 (524)
.+-.||+-|+.+|.+.+.|...|..- + ..+..++..+ ++.- ..|+++|+.-++.+....| .|+|+-+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D~~g----F--~LL~~iv~~~---p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv- 264 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKANDHYG----F--DLLESIVENL---PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFV- 264 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCHHHH----H--HHHHHHHHHS----HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHH-
T ss_pred cchhhHHHHHHHHHHHHCCCCcchHH----H--HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHH-
Confidence 45689999999999999987655421 1 1344455544 2321 4588888888888776655 6777766
Q ss_pred HHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCC
Q 009829 270 NIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLH 319 (524)
Q Consensus 270 nif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLH 319 (524)
+|+.++. ...|...+.+++.+|-.|. ...++.++++|--
T Consensus 265 -~F~~~~~---~~~g~~~li~~id~IQ~gl-------F~~il~~v~lp~~ 303 (435)
T PF03378_consen 265 -VFLSLFA---IKYGPDFLIQTIDSIQPGL-------FGMILEKVWLPDL 303 (435)
T ss_dssp -HHHHHHH---HHH-HHHHHHHHHTTSTTH-------HHHHHHHTHHHHG
T ss_pred -HHHHHHH---HHcCHHHHHHHHHHhcCCc-------HHHHHHHHhcCch
Confidence 3433321 1229999999999998874 2366777888743
No 36
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=25.33 E-value=2.9e+02 Score=30.99 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCc--CChHHhhccCCHHHHHHHhhcCCCCChhHH-HHHHHHHHHH
Q 009829 200 LVYEFLLRFVASPE--TDAKLAKRYIDQSFILKLLDLFDSEDPRER-EYLKTILHRI 253 (524)
Q Consensus 200 lVYeillrfv~s~~--~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRER-d~LKtiLHrI 253 (524)
.+-|+|+|+|.... ....+..=.-++.+|.+|+++|+.+...++ ...-.+|.-|
T Consensus 34 ~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aI 90 (475)
T PF04499_consen 34 AIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAI 90 (475)
T ss_pred HHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 57899999998543 223344444579999999999975554444 3344444333
No 37
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.60 E-value=3.1e+02 Score=26.37 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHh----ccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 009829 387 CMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQ----NRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFF 462 (524)
Q Consensus 387 i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~----n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~ 462 (524)
++...++.|-+|.-|++.+|+-.|+.+ +.++.+ |...++|.++. |. .-=|+.|++.|...++.+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~------l~~il~qGLvnP~~cvp~lIA-L~----ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQV------LELILRQGLVNPKQCVPTLIA-LE----TSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH------HHHHHhcCCCChHHHHhHhhh-hh----CCCChHHHHHHHHHHHHHH
Confidence 445567888889999999999999976 444432 55666665443 32 2248999999999999999
Q ss_pred hhCHHHHHHHH
Q 009829 463 DLDPELFKECL 473 (524)
Q Consensus 463 e~D~~lf~~~~ 473 (524)
+--+.+++...
T Consensus 74 eK~~s~v~~~~ 84 (187)
T PF12830_consen 74 EKHESLVESRY 84 (187)
T ss_pred HHhHHHHHHHH
Confidence 99988887754
No 38
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=24.39 E-value=6.1e+02 Score=23.95 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q 009829 384 FQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 384 f~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e 463 (524)
|..++.|....+..|+.+++..|=+.|+.+.. .|+.++.-.+=+.++..+......- |+.|++.|...+.-+..
T Consensus 19 ~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls-----~Li~~d~ik~k~~l~~~~l~~l~D~-~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 19 YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLS-----HLILEDMIKVKGQLFSRILKLLVDE-NPEIRSLARSFFSELLK 92 (178)
T ss_pred CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHH-----HHHHcCceeehhhhhHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Q ss_pred h-CHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHH
Q 009829 464 L-DPELFKECLAKFREYESKE-------GEIEARREATWKRLEE 499 (524)
Q Consensus 464 ~-D~~lf~~~~~~~~~~~~~~-------~~~~~kr~~~W~~l~~ 499 (524)
. +|..+..+.-.+-..-... ....++|+..-+-+.+
T Consensus 93 ~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~ 136 (178)
T PF12717_consen 93 KRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLD 136 (178)
T ss_pred hccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHH
No 39
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=23.64 E-value=2.7e+02 Score=32.46 Aligned_cols=104 Identities=23% Similarity=0.375 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhhhc---chHHHHHH-H--------hc-------cccccccchHHHHHHh----hhhh
Q 009829 390 PLFQQIARCLNSLHFQVAERALFLWN---NDHIENLI-I--------QN-------RKVILPIIFPALEKNA----RNHW 446 (524)
Q Consensus 390 pLF~~la~Ci~S~hfQVAErAL~lWn---Ne~i~~li-~--------~n-------~~~I~Pii~p~L~~~s----~~HW 446 (524)
.||...++-+-|+|=+||-.|..+|. .|.+..-+ . +| ...|+|.+..-|.+-. ..-|
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 48888999999999999999999993 12222211 1 11 2337888887777622 4479
Q ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 009829 447 NQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEG 503 (524)
Q Consensus 447 n~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~~l~~~A~~ 503 (524)
|..+- |..-+++|.+.-.+.--+-.-.|-|. --|.+.|...|..+..
T Consensus 343 n~sma--A~sCLqlfaq~~gd~i~~pVl~FvEq--------ni~~~~w~nreaavmA 389 (858)
T COG5215 343 NPSMA--ASSCLQLFAQLKGDKIMRPVLGFVEQ--------NIRSESWANREAAVMA 389 (858)
T ss_pred chhhh--HHHHHHHHHHHhhhHhHHHHHHHHHH--------hccCchhhhHHHHHHH
Confidence 97654 34445555554433322222223222 2345788888877744
No 40
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.64 E-value=3.1e+02 Score=23.83 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhC---ChhHHHHhhHHHHHHHHHHhCCCcHHHHH
Q 009829 332 SYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEAT---QLPEFQRCMVPLFQQIARCLNSLHFQVAE 408 (524)
Q Consensus 332 ~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~---~p~ef~~i~~pLF~~la~Ci~S~hfQVAE 408 (524)
..-+++++..+..-+..++..+.+|=-.+.+.+-+-+|.-+.+|+-.. -...|.....++|....+-....+-+=..
T Consensus 21 I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~ 100 (114)
T cd03562 21 IQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLE 100 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344556666666777777777777777778888888999999998764 23556676678886666544444444456
Q ss_pred HHHhhhcch
Q 009829 409 RALFLWNND 417 (524)
Q Consensus 409 rAL~lWnNe 417 (524)
|-+.+|..-
T Consensus 101 rl~~iW~~~ 109 (114)
T cd03562 101 RLLNIWEER 109 (114)
T ss_pred HHHHHccCC
Confidence 777778743
No 41
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=23.07 E-value=6.4e+02 Score=23.75 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCCCChhH-HHHHHHHHHHHhccccCChHHHHHHHHHHHhHh
Q 009829 226 SFILKLLDLFDSEDPRE-REYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 275 (524)
Q Consensus 226 ~Fv~~Ll~lfdSeDpRE-Rd~LKtiLHrIYgKf~~~R~fIRk~Innif~~f 275 (524)
.++..|+..+.+.||.- ++..-..|.+||..--+.-.+.|+......-.|
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 36667777776666654 667777888888776666677776655444444
No 42
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.70 E-value=8.1e+02 Score=25.98 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=62.7
Q ss_pred HHHHhhHHHHHHHHHHhCC--CcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhh---hhHHHHHHHHHH
Q 009829 383 EFQRCMVPLFQQIARCLNS--LHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNH---WNQAVHSLTLNV 457 (524)
Q Consensus 383 ef~~i~~pLF~~la~Ci~S--~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~H---Wn~~V~~la~nv 457 (524)
+..++..||+--+++|.-- .-+.|-|..-. +++ -.|-...++++-++-| ||.+ -|..=
T Consensus 224 eLdk~~tpLllNy~QC~L~~~e~yevleh~se---------iL~-----~~~~nvKA~frRakAhaa~Wn~~---eA~~D 286 (329)
T KOG0545|consen 224 ELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE---------ILR-----HHPGNVKAYFRRAKAHAAVWNEA---EAKAD 286 (329)
T ss_pred HHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH---------HHh-----cCCchHHHHHHHHHHHHhhcCHH---HHHHH
Confidence 4667889999999998632 22233332221 121 1466788999888776 9954 45566
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009829 458 RKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKR 496 (524)
Q Consensus 458 lkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~~ 496 (524)
++-..++||.+-.-....++.-+.+.++++++-+.....
T Consensus 287 ~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k 325 (329)
T KOG0545|consen 287 LQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK 325 (329)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 677789999998888887777666655555544444433
No 43
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.28 E-value=7.7e+02 Score=24.37 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=77.0
Q ss_pred hchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHH
Q 009829 326 MYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQ 405 (524)
Q Consensus 326 ~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQ 405 (524)
.||.-|--|+.-.-|++........+|+ .++|+....+....++..|-.-|-+++++.+-.
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~-------------------~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~ 95 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGI-------------------KDLLERGGGEKILPVLPQLIIPLKRALNTRDPE 95 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHH-------------------HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5888898999888888877665555553 345555556667777888888889999999999
Q ss_pred HHHHHHhhhcc-----hHHHHHHHhccccccccchHHHHHHhh-hhh-------hHHHHHHHHHHHHHHHhhC-HHHH
Q 009829 406 VAERALFLWNN-----DHIENLIIQNRKVILPIIFPALEKNAR-NHW-------NQAVHSLTLNVRKIFFDLD-PELF 469 (524)
Q Consensus 406 VAErAL~lWnN-----e~i~~li~~n~~~I~Pii~p~L~~~s~-~HW-------n~~V~~la~nvlkil~e~D-~~lf 469 (524)
|-.++|..... +.+=..+..+-+.++|+ -.++++.+ +.+ .+.+..+...+|++|..-- +++|
T Consensus 96 V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~--ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 96 VFCATLKALQQLVTSSDMVGEALVPYYRQLLPV--LNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 99999987652 22222223333333443 22223322 122 3556666666666665544 3443
No 44
>PF14724 mit_SMPDase: Mitochondrial-associated sphingomyelin phosphodiesterase
Probab=22.05 E-value=6.1e+02 Score=30.42 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=73.0
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCCh------------h--------HHHH-------hhHHHHHHHHHHh
Q 009829 347 DAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQL------------P--------EFQR-------CMVPLFQQIARCL 399 (524)
Q Consensus 347 ~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p------------~--------ef~~-------i~~pLF~~la~Ci 399 (524)
-.+++..+.|||...|- ..-+|--|..++| + .... +-..||..+..+.
T Consensus 371 Y~FL~~~f~~wPLdsSF-----r~VLE~WLSYIQPWRY~~~~~~~~~~~~~~~~~~~W~~FV~~Nl~~YT~lf~~fl~R~ 445 (765)
T PF14724_consen 371 YRFLRHCFDHWPLDSSF-----RVVLELWLSYIQPWRYTPEKQSPQSESQDRPVSERWAPFVLENLLFYTSLFQGFLPRF 445 (765)
T ss_pred HHHHHHhccCCCChHHH-----HHHHHHHHHhhCCeecCCccCCCccccccccchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35678889999999884 3445656665544 1 1110 1123454444332
Q ss_pred -----CC-CcHHHHHHHHhhhcchHHHHHHHhcccccccc------------chHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009829 400 -----NS-LHFQVAERALFLWNNDHIENLIIQNRKVILPI------------IFPALEKNARNHWNQAVHSLTLNVRKIF 461 (524)
Q Consensus 400 -----~S-~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pi------------i~p~L~~~s~~HWn~~V~~la~nvlkil 461 (524)
.+ -|.++--|.+.+++-+.+..+|.+.-+....- +-|.....--..|++++.+.+..|..-.
T Consensus 446 ~r~Dl~~~~na~ml~RvakVfsQ~~L~~~l~~~E~l~~~~~~~~~~~~~~~~~~~~~~~S~~s~~~~~~t~~~~~vkshv 525 (765)
T PF14724_consen 446 LRLDLSSPKNALMLFRVAKVFSQPNLAEMLQNGEQLFLEPEHGFPHRQHRVNLTPSKSGSFLSSWNPAVTDASFKVKSHV 525 (765)
T ss_pred HhcccccchhHHHHHHHHHHhCchhHHHHHHHHHHHhcCCccccCCCccccccCcccCCCcccCCCccchhHHHHHHHHH
Confidence 22 45778889999999999999998764444331 1122222234689999999999999888
Q ss_pred HhhC
Q 009829 462 FDLD 465 (524)
Q Consensus 462 ~e~D 465 (524)
+++.
T Consensus 526 ~~Le 529 (765)
T PF14724_consen 526 YELE 529 (765)
T ss_pred Hhhh
Confidence 8884
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=21.89 E-value=7.1e+02 Score=23.83 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=94.5
Q ss_pred CCCChhHHHHHHHHHHHHhccc--cCChHHHHHHHH---HHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHH
Q 009829 236 DSEDPREREYLKTILHRIYGKF--MVHRPFIRKAIN---NIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVF 310 (524)
Q Consensus 236 dSeDpRERd~LKtiLHrIYgKf--~~~R~fIRk~In---nif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~F 310 (524)
.+.|=.+|.---+-|.++-..- ...++-+-..+. ..+..-+ .+.+..-+.+.+.+++.+..+..-.+... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 5566666665555555554433 122222222222 2222222 12334445677888888887766665444 555
Q ss_pred HHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCC--hhHHHHh-
Q 009829 311 LVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQ--LPEFQRC- 387 (524)
Q Consensus 311 L~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~--p~ef~~i- 387 (524)
+...|+-+..... ..+.+.-..|+..+++.-+-....++..+...+---|+.==..-+.-+..+++... ...++.-
T Consensus 95 ~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 95 LLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 5667777766643 45677777888888876552233335566655655554444456667777777766 4555443
Q ss_pred -hHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 009829 388 -MVPLFQQIARCLNSLHFQVAERALFLWN 415 (524)
Q Consensus 388 -~~pLF~~la~Ci~S~hfQVAErAL~lWn 415 (524)
+..+-+.|.+|++..+..|=+.|-..|.
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999888877664
No 46
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=1.5e+03 Score=27.56 Aligned_cols=215 Identities=17% Similarity=0.293 Sum_probs=116.9
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCCh---HHHHHH--HHHHHhHhhhccccccCH----HHHHHHHHH
Q 009829 224 DQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHR---PFIRKA--INNIFYRFIFETERHNGI----AEFLEILGS 294 (524)
Q Consensus 224 d~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R---~fIRk~--Innif~~fiyEte~hnGI----aELLeIlgS 294 (524)
+..|+.=|.+.+.+|.-|+-.+ ..+-.|..|=|.-- +++... +++.|+- |.|. .++.|=+.-
T Consensus 231 Nd~f~nLLy~fl~ieelR~aac--~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~-------~s~dq~~d~df~e~vsk 301 (980)
T KOG2021|consen 231 NDYFLNLLYKFLNIEELRIAAC--NCILAIVSKKMKPMDKLALLNMLNQTLELFGY-------HSADQMDDLDFWESVSK 301 (980)
T ss_pred chhHHHHHHHHHhHHHHHHHHH--HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh-------hccccccCchHHHHHHH
Confidence 4456666777888888877654 44556666655421 222222 3444432 2333 468888999
Q ss_pred HhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhC-cCcHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 009829 295 IINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKD-CKLADAVIRGLLKYWPVTNSSKEVMFLNELE 373 (524)
Q Consensus 295 IInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKD-p~L~~~vi~gLLk~WP~tns~KEv~FL~Ele 373 (524)
.||||++-|-.-|++-- .-+=|+.|-.++..--. +.-.+.||+..+ -..+..++- |+.-.-
T Consensus 302 Litg~gvel~~i~s~ln-seld~~~kqn~l~~ll~-~vpyllq~l~~e~ddit~~ifp----------------Flsdyl 363 (980)
T KOG2021|consen 302 LITGFGVELTIIISQLN-SELDTLYKQNVLSILLE-IVPYLLQFLNNEFDDITAKIFP----------------FLSDYL 363 (980)
T ss_pred HHhhcceeeehhHhhhh-hccCHHHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHHH----------------HHHHHH
Confidence 99999999988887642 33334444333332222 223334554332 233333332 222222
Q ss_pred HHHhh---CCh---hHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhh
Q 009829 374 EVLEA---TQL---PEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWN 447 (524)
Q Consensus 374 eiLe~---~~p---~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn 447 (524)
..|-. +.. ....+++..+|++|. -.-++.|+.+ .+..+.- --+
T Consensus 364 ~~LKkl~~ls~~qk~~l~~illai~kqic-----------ydemy~nddn-----------------~tg~EeE---a~f 412 (980)
T KOG2021|consen 364 AFLKKLKALSSPQKVPLHKILLAIFKQIC-----------YDEMYFNDDN-----------------VTGDEEE---AFF 412 (980)
T ss_pred HHHhhcccccchhhccHHHHHHHHHHHHh-----------ccHHhhcccC-----------------CCCchHH---HHH
Confidence 22221 111 223445555666653 2345667644 2344433 347
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009829 448 QAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELA 501 (524)
Q Consensus 448 ~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~~l~~~A 501 (524)
+.+|+--.+.+..+..+||.+|-....+--... ..--.++.|+.+|-+-
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~a-----l~ns~e~swqevE~Ai 461 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAA-----LMNSKEESWQEVELAI 461 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HhcCCcchHHHHHHHH
Confidence 889999999999999999999877543322111 1112267899888654
No 47
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=20.60 E-value=1.5e+02 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHh
Q 009829 481 SKEGEIEARREATWKRLEELAE 502 (524)
Q Consensus 481 ~~~~~~~~kr~~~W~~l~~~A~ 502 (524)
+++++++++++++|++|.+++.
T Consensus 140 er~k~~~e~~~~k~~~l~~~~e 161 (162)
T PF13019_consen 140 EREKKEKEKRRKKLEKLVEMLE 161 (162)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677899999999874
No 48
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.
Probab=20.52 E-value=1.1e+02 Score=30.02 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHhhhcc
Q 009829 264 IRKAINNIFYRFIFET 279 (524)
Q Consensus 264 IRk~Innif~~fiyEt 279 (524)
-.-.|||+||||+.=.
T Consensus 75 s~MamnNv~Yr~~hl~ 90 (177)
T TIGR00777 75 AIMAMNNVFYRGRHLL 90 (177)
T ss_pred HHHhhhhHHHHhHhhc
Confidence 3457999999998654
No 49
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=20.04 E-value=82 Score=31.69 Aligned_cols=44 Identities=34% Similarity=0.607 Sum_probs=33.2
Q ss_pred HHHHHhcccCC---CCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCc
Q 009829 291 ILGSIINGFAL---PLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDC 343 (524)
Q Consensus 291 IlgSIInGFal---PLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp 343 (524)
-.||-||||++ |.-.||++.-.. -+--||+|.-..|..|+....
T Consensus 223 ~v~SCING~tV~YYP~I~~~qQ~tQQ---------ELv~YH~qvEqLvqSFvnnss 269 (271)
T PF06901_consen 223 AVGSCINGFTVQYYPFIREKQQLTQQ---------ELVGYHQQVEQLVQSFVNNSS 269 (271)
T ss_pred hhhhhccCceeeeehhhhhhccccHH---------HHHHHHHHHHHHHHHHhcCcC
Confidence 36899999987 666688765444 344799999999999987643
Done!