Query 009829
Match_columns 524
No_of_seqs 164 out of 307
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fga_B Serine/threonine-protei 100.0 3E-146 1E-150 1147.7 35.1 401 97-499 1-402 (403)
2 2npp_B PP2A, B subunit, serine 100.0 1E-146 4E-151 1165.8 28.6 419 87-507 24-443 (449)
3 2jak_A Serine/threonine-protei 100.0 2E-131 8E-136 1032.0 34.7 356 87-444 36-392 (392)
4 1qgr_A Protein (importin beta 93.2 11 0.00039 40.8 22.6 230 227-463 218-479 (876)
5 1ibr_B P95, importin beta-1 su 92.7 2.2 7.4E-05 42.5 14.7 155 303-466 83-249 (462)
6 2bpt_A Importin beta-1 subunit 91.4 18 0.00063 39.1 23.8 262 196-463 175-482 (861)
7 2qk2_A LP04448P; mini spindles 90.4 7.8 0.00027 36.0 15.1 177 231-414 20-200 (242)
8 2qk1_A Protein STU2; STU2P, XM 90.3 7.9 0.00027 37.1 15.4 182 232-415 22-216 (249)
9 2bpt_A Importin beta-1 subunit 89.7 11 0.00039 40.7 17.9 88 368-459 576-664 (861)
10 4fdd_A Transportin-1; heat rep 89.5 3.5 0.00012 45.7 13.8 221 228-470 15-251 (852)
11 1qgr_A Protein (importin beta 87.9 34 0.0011 37.1 20.2 90 369-460 585-676 (876)
12 2x19_B Importin-13; nuclear tr 87.7 14 0.00047 41.3 17.2 200 228-474 688-905 (963)
13 4fdd_A Transportin-1; heat rep 85.6 47 0.0016 36.6 23.0 278 225-507 482-789 (852)
14 2jdq_A Importin alpha-1 subuni 81.8 38 0.0013 33.4 15.6 231 219-463 100-347 (450)
15 2of3_A ZYG-9; multifunctional 81.5 21 0.00072 35.4 13.4 139 304-476 32-176 (266)
16 1u6g_C TIP120 protein, CAND1; 76.8 37 0.0013 39.2 15.5 99 364-464 493-599 (1230)
17 2km4_A Regulator of TY1 transp 70.2 12 0.0004 33.4 7.3 82 337-418 27-117 (142)
18 2vgl_B AP-2 complex subunit be 68.6 35 0.0012 36.4 11.9 175 226-415 353-528 (591)
19 1u6g_C TIP120 protein, CAND1; 65.8 68 0.0023 36.9 14.4 202 227-441 7-221 (1230)
20 1ibr_B P95, importin beta-1 su 64.6 1.1E+02 0.0038 30.0 16.1 66 372-439 390-457 (462)
21 4fu3_A Regulation of nuclear P 58.1 18 0.0006 31.4 6.0 82 335-416 26-113 (135)
22 1wa5_B Importin alpha subunit; 56.6 1.8E+02 0.0062 29.8 15.3 186 221-416 168-367 (530)
23 2qk1_A Protein STU2; STU2P, XM 56.3 74 0.0025 30.2 10.6 98 372-475 128-233 (249)
24 1wa5_C Importin alpha RE-expor 52.3 1.6E+02 0.0054 33.2 14.1 73 226-298 548-629 (960)
25 3m1i_C Exportin-1; heat repeat 51.2 1.5E+02 0.0052 33.7 13.9 34 383-416 337-370 (1049)
26 2x1g_F Cadmus; transport prote 50.5 2.5E+02 0.0085 31.3 15.3 29 388-416 827-855 (971)
27 3tjz_B Coatomer subunit gamma; 49.8 2.3E+02 0.0077 28.9 14.4 159 281-477 59-219 (355)
28 4b8j_A Importin subunit alpha- 48.7 2.3E+02 0.008 28.8 18.1 105 217-322 151-256 (528)
29 1wa5_C Importin alpha RE-expor 47.1 3.5E+02 0.012 30.3 20.6 33 225-257 122-154 (960)
30 1w63_A Adapter-related protein 44.7 2.2E+02 0.0075 30.5 13.2 80 330-415 480-573 (618)
31 2x19_B Importin-13; nuclear tr 43.2 1.3E+02 0.0043 33.5 11.3 28 389-416 334-366 (963)
32 2qk2_A LP04448P; mini spindles 41.3 95 0.0033 28.4 8.6 126 367-503 34-163 (242)
33 1eyh_A Epsin; superhelix of he 39.3 64 0.0022 29.0 6.7 107 349-464 9-123 (144)
34 1vdy_A Hypothetical protein (R 38.1 41 0.0014 30.3 5.2 93 369-465 32-132 (140)
35 1oks_A RNA polymerase alpha su 37.5 24 0.00081 27.1 2.9 46 290-337 5-50 (56)
36 2jdq_A Importin alpha-1 subuni 34.6 3.3E+02 0.011 26.5 18.7 225 226-467 64-309 (450)
37 3gs3_A Symplekin, LD45768P; he 34.6 2.6E+02 0.0088 27.3 10.8 110 331-461 36-153 (257)
38 3onk_A Epsin-3, ENT3; helix, p 32.9 98 0.0034 28.1 6.9 92 372-465 32-131 (150)
39 1sz9_A PCF11 protein; RNA poly 32.0 1.1E+02 0.0038 27.2 7.0 90 328-417 23-115 (144)
40 1b3u_A Protein (protein phosph 29.3 4.5E+02 0.016 26.4 15.0 68 391-464 165-233 (588)
41 1wa5_B Importin alpha subunit; 27.1 5.1E+02 0.018 26.3 16.6 72 389-468 256-333 (530)
42 3m1i_C Exportin-1; heat repeat 26.1 5E+02 0.017 29.4 12.8 108 302-413 83-218 (1049)
43 4db6_A Armadillo repeat protei 25.4 3.3E+02 0.011 23.5 13.7 72 226-298 12-84 (210)
44 3ibv_A Exportin-T; karyopherin 25.1 68 0.0023 37.0 5.4 81 228-318 704-785 (980)
45 4flb_A Regulation of nuclear P 24.6 1.3E+02 0.0046 25.6 6.1 82 335-416 27-112 (132)
46 3u0r_A Apoptosis inhibitor 5; 22.1 7.7E+02 0.026 26.6 18.5 58 344-401 260-323 (507)
47 2vgl_A Adaptor protein complex 21.4 6.5E+02 0.022 27.0 12.0 83 328-415 493-585 (621)
No 1
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=3.1e-146 Score=1147.66 Aligned_cols=401 Identities=56% Similarity=1.020 Sum_probs=395.0
Q ss_pred ChHHhHHHHHHHHhcCcccccc-cCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhcccCCCCCCCC
Q 009829 97 PSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANLFRTLIPQPRE 175 (524)
Q Consensus 97 ~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~NiFR~lPp~~~~ 175 (524)
|++||++||++||++||++||| +||.+|+++||+||+||+||+|||+++++++||++|+++++||++||||++||++++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6789999999999999999999 899999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 009829 176 NKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYG 255 (524)
Q Consensus 176 ~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYg 255 (524)
++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+|||+||||||
T Consensus 81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 43 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHH
Q 009829 256 KFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCI 335 (524)
Q Consensus 256 Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi 335 (524)
||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||+||++||.||||||||+++++.||+||+|||
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 009829 336 TQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN 415 (524)
Q Consensus 336 ~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn 415 (524)
+||++|||+|++.|++|||||||+|||+||||||+||++||+.++|++|+++++|||+|||+|++|+|||||||||++||
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009829 416 NDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWK 495 (524)
Q Consensus 416 Ne~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~ 495 (524)
|++|+++|++|++.|+|+|+|+|++++++|||++||++|+||+|+|||||+++|++|+++|+++++++++++++|+++|+
T Consensus 319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009829 496 RLEE 499 (524)
Q Consensus 496 ~l~~ 499 (524)
+||+
T Consensus 399 ~~~~ 402 (403)
T 3fga_B 399 KIEN 402 (403)
T ss_dssp TCSC
T ss_pred HHhc
Confidence 9874
No 2
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1e-146 Score=1165.81 Aligned_cols=419 Identities=55% Similarity=0.994 Sum_probs=382.1
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhcCcccccc-cCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhc
Q 009829 87 YDTLPALKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANL 165 (524)
Q Consensus 87 l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~Ni 165 (524)
+++||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHH
Q 009829 166 FRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREY 245 (524)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~ 245 (524)
||++||+.++++ ..||+|||||++||+|||||+||++|+|||+|+++++++||+|||++||++|+++||||||||||+
T Consensus 104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 181 (449)
T 2npp_B 104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181 (449)
T ss_dssp CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCch
Q 009829 246 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLA 325 (524)
Q Consensus 246 LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~ 325 (524)
||||||||||||+++|+|||++|||+||+||||+++||||+||||||||||||||+|||+||++||.||||||||+++++
T Consensus 182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~ 261 (449)
T 2npp_B 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261 (449)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHH
Q 009829 326 MYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQ 405 (524)
Q Consensus 326 ~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQ 405 (524)
.||+||+|||+||++|||+|++.|++|||||||+|||+||||||+|||+||+.++|++|+++++|||+|||+|++|+|||
T Consensus 262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHH
Q 009829 406 VAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGE 485 (524)
Q Consensus 406 VAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~ 485 (524)
||||||++|+|++|+++|++|+++|+|+|+|+|++++++|||++||++|++|+++||||||++|++|+++|+++++++++
T Consensus 342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~ 421 (449)
T 2npp_B 342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421 (449)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 009829 486 IEARREATWKRLEELAEGNVPI 507 (524)
Q Consensus 486 ~~~kr~~~W~~l~~~A~~~~~~ 507 (524)
++++|+++|++|+++|++++..
T Consensus 422 ~~~~r~~~W~~i~~~A~~~~~~ 443 (449)
T 2npp_B 422 KMKEREEAWVKIENLAKANPQV 443 (449)
T ss_dssp TSCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999888653
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.4e-131 Score=1032.05 Aligned_cols=356 Identities=59% Similarity=1.039 Sum_probs=325.2
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhcCcccccc-cCCCCCchhHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhhc
Q 009829 87 YDTLPALKDVPSAEKQNLFIKKLNLCCVVFDF-TDPTKNLKEKEIKRQMLLELVDYVTSANGKFNETVMQEAVKMVSANL 165 (524)
Q Consensus 87 l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~Ni 165 (524)
+++||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++++++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHH
Q 009829 166 FRTLIPQPRENKIVDGVDLEEEEPAMDPAWPHLQLVYEFLLRFVASPETDAKLAKRYIDQSFILKLLDLFDSEDPREREY 245 (524)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~ 245 (524)
||++||..++++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCch
Q 009829 246 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLA 325 (524)
Q Consensus 246 LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~ 325 (524)
|||+||||||||+++|+||||+|||+||+||||+++|||||||||||||||||||+|||+||++||.||||||||+++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHH
Q 009829 326 MYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQ 405 (524)
Q Consensus 326 ~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQ 405 (524)
.||+||+|||+||++|||+|++.|++|||||||+|||+||||||+|||+||+.+++++|+++++|||+|||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhh
Q 009829 406 VAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARN 444 (524)
Q Consensus 406 VAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~ 444 (524)
||||||++|||++|+++|++|+++|+|+|||+|++++++
T Consensus 354 VAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 354 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 999999999999999999999999999999999999874
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=93.16 E-value=11 Score=40.81 Aligned_cols=230 Identities=10% Similarity=0.076 Sum_probs=115.3
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhccccC-ChHHHH-HHHHHHHhHhhhccccccCHHHHHHHHHHHhcccC----
Q 009829 227 FILKLLDLFDSEDPREREYLKTILHRIYGKFMV-HRPFIR-KAINNIFYRFIFETERHNGIAEFLEILGSIINGFA---- 300 (524)
Q Consensus 227 Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~-~R~fIR-k~Innif~~fiyEte~hnGIaELLeIlgSIInGFa---- 300 (524)
++.-+.++..++|++-|...-.+|.++...+.. .++++. ..+. ++...+- .+...-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~ 295 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAI 295 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH-HHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhh
Confidence 455566677888998898777777776654432 355665 3332 3322221 1111112345666666654210
Q ss_pred -------------CCCH---HHHHHHHHHHhhcCCCC-------CCchhchHHHHHHHHHHHHhCc-CcHHHHHHHhhhc
Q 009829 301 -------------LPLK---EEHKVFLVRVLIPLHKP-------KSLAMYHQQLSYCITQFVEKDC-KLADAVIRGLLKY 356 (524)
Q Consensus 301 -------------lPLK---eEHk~FL~rvLiPLHk~-------k~~~~Yh~qL~yCi~qFveKDp-~L~~~vi~gLLk~ 356 (524)
.+.. ..|..-+...++.+... ... .....-..|+....+..+ .+...++..+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~ 374 (876)
T 1qgr_A 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 374 (876)
T ss_dssp HHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHH
Confidence 0000 11111122222222211 011 111122233333332221 3344555544443
Q ss_pred CCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhc--cccccccc
Q 009829 357 WPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQN--RKVILPII 434 (524)
Q Consensus 357 WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n--~~~I~Pii 434 (524)
.--.+...-..-+.-+..+.+.+.++.+......++..+-.++.++|..|-++|+..+. .+...+... ....++-+
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPL 452 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHCGGGTSSTTTHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHHHhCchhcccHHHHHHH
Confidence 32233222223334455555666666677777778888889999999999998887654 233333221 23446667
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q 009829 435 FPALEKNARNHWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 435 ~p~L~~~s~~HWn~~V~~la~nvlkil~e 463 (524)
++.|.+....+ ..|+..+..++.-+.+
T Consensus 453 l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 453 LQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 77777766654 6677666665555543
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.66 E-value=2.2 Score=42.52 Aligned_cols=155 Identities=8% Similarity=0.033 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhC------cCcHHHHHHHhhhcCCCC--CChhHHHHHHHHHH
Q 009829 303 LKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKD------CKLADAVIRGLLKYWPVT--NSSKEVMFLNELEE 374 (524)
Q Consensus 303 LKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKD------p~L~~~vi~gLLk~WP~t--ns~KEv~FL~Elee 374 (524)
+.++.+..+...|+++.....-.. .+++.|+......| |.+...++..+- -. +......-+.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHH
Confidence 557777888888888776655444 78899988876554 223333333321 12 22223344556666
Q ss_pred HHhhCChhHHHHhhHHHHHHHHHHhCCC--cHHHHHHHHhhhcc--hHHHHHHHhccccccccchHHHHHHhhhhhhHHH
Q 009829 375 VLEATQLPEFQRCMVPLFQQIARCLNSL--HFQVAERALFLWNN--DHIENLIIQNRKVILPIIFPALEKNARNHWNQAV 450 (524)
Q Consensus 375 iLe~~~p~ef~~i~~pLF~~la~Ci~S~--hfQVAErAL~lWnN--e~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V 450 (524)
+.+...++.+......++..+..|+.++ +..|-..|+....+ +.+...+.. ....+.+++.|.+... +=+..|
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~-~~~~~v 233 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEATQ-CPDTRV 233 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHHTT-CSSHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhcC-CCCHHH
Confidence 7766656667777788999999999998 78887777655443 111111110 0011223444544333 334677
Q ss_pred HHHHHHHHHHHHhhCH
Q 009829 451 HSLTLNVRKIFFDLDP 466 (524)
Q Consensus 451 ~~la~nvlkil~e~D~ 466 (524)
|..++.++..+.+..+
T Consensus 234 r~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8777777777665544
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.38 E-value=18 Score=39.11 Aligned_cols=262 Identities=12% Similarity=0.135 Sum_probs=133.1
Q ss_pred chHHHHHHHHHHHhcCCcCChHH-------hhc---cCCH--------H-HHHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 009829 196 PHLQLVYEFLLRFVASPETDAKL-------AKR---YIDQ--------S-FILKLLDLFDSEDPREREYLKTILHRIYGK 256 (524)
Q Consensus 196 pHLqlVYeillrfv~s~~~d~k~-------ak~---~Id~--------~-Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgK 256 (524)
+|..-+...|...+.+++.++.+ ... +++. . ++.-|...+.++|++.|...-.+|.+|...
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 57777778777777765323221 111 2221 2 344455677899999999877777777665
Q ss_pred ccC-ChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccC-----------CC-----CHHHHHHHHHHHhhcCC
Q 009829 257 FMV-HRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFA-----------LP-----LKEEHKVFLVRVLIPLH 319 (524)
Q Consensus 257 f~~-~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFa-----------lP-----LKeEHk~FL~rvLiPLH 319 (524)
+.. .++++.+.+-..+...+... ...-....++++++++.... .| .-..+...+..+|+...
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 443 34566633334444443221 12223456777777764210 00 00111122233343333
Q ss_pred CCC-------CchhchHHHHHHHHHHHHhC-cCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHH
Q 009829 320 KPK-------SLAMYHQQLSYCITQFVEKD-CKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPL 391 (524)
Q Consensus 320 k~k-------~~~~Yh~qL~yCi~qFveKD-p~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pL 391 (524)
+.. ... ....-..|+..+...- ..+...++..+...---.+...-..-+.-+..+.+.+.++.+...+..+
T Consensus 334 ~~~~~d~~d~~~~-~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~i 412 (861)
T 2bpt_A 334 TRQNEDPEDDDWN-VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA 412 (861)
T ss_dssp TCCCCC-CCCCCH-HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred HhcccccccccCc-HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 111 1112223333332221 1233444444433221122222222233455555656667787778888
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhc--cccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q 009829 392 FQQIARCLNSLHFQVAERALFLWNNDHIENLIIQN--RKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 392 F~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n--~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e 463 (524)
...|..++..+|..|.++|+..+. .+...+... ....++-++|.|.+....+ ..|+..++.++.-+.+
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 888999999999999988865432 333343322 1344566667776665554 5677776666654443
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.37 E-value=7.8 Score=35.99 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=111.3
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhc---cccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHHH
Q 009829 231 LLDLFDSEDPREREYLKTILHRIYG---KFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEEH 307 (524)
Q Consensus 231 Ll~lfdSeDpRERd~LKtiLHrIYg---Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEH 307 (524)
+++.++|.|.+||..--.-|..+-. ++.. ..+.+ +-+.+.+.+-.+...+-....+.++|.+.++....+...+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~-i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGA-LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5666789999999876666666643 3222 11222 2233444442122233345678888888887755454434
Q ss_pred HHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhH-HHH
Q 009829 308 KVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPE-FQR 386 (524)
Q Consensus 308 k~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~e-f~~ 386 (524)
.-+...|+...+.+.- .-.+....++..+++.-+ ...++..|+.+.--.|++=...-+.-|..++....|+. +..
T Consensus 97 -~~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKP-NVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp -HHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred -HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 3445556666655543 234566777777776533 35666777766655566655666778888888776653 566
Q ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHhhh
Q 009829 387 CMVPLFQQIARCLNSLHFQVAERALFLW 414 (524)
Q Consensus 387 i~~pLF~~la~Ci~S~hfQVAErAL~lW 414 (524)
.+..+...|..|++..+..|-++|....
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 6777888889999999998888886544
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.25 E-value=7.9 Score=37.12 Aligned_cols=182 Identities=8% Similarity=0.057 Sum_probs=120.8
Q ss_pred hhcCCCCChhHHHHHHHHHHH-Hh-c--cccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccC-CCCHHH
Q 009829 232 LDLFDSEDPREREYLKTILHR-IY-G--KFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFA-LPLKEE 306 (524)
Q Consensus 232 l~lfdSeDpRERd~LKtiLHr-IY-g--Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFa-lPLKeE 306 (524)
.+.+.|.|.+||...-.-|.. +- | +.+.+..-.. .+-+.+...+-.+.+..-+..-+.++|.+.+|+. -.....
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 334478999999877766666 65 3 3431010000 1112333333222233335678899999999997 556524
Q ss_pred HHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhC-c----CcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCCh
Q 009829 307 HKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKD-C----KLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQL 381 (524)
Q Consensus 307 Hk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKD-p----~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p 381 (524)
|..-+.-.|+..++-+.- .--....+|+..+++.= | .-.+.++.-|+..+-..|++=....|.-|..+++....
T Consensus 101 y~~~llp~ll~~l~dkk~-~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKP-SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 444456677777777663 33456778999898753 2 21346777777777666776667788888989987754
Q ss_pred --hHHHHhh-HHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 009829 382 --PEFQRCM-VPLFQQIARCLNSLHFQVAERALFLWN 415 (524)
Q Consensus 382 --~ef~~i~-~pLF~~la~Ci~S~hfQVAErAL~lWn 415 (524)
..|.+.+ ..+...+.+|+.-..-.|=++|.....
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7888888 899999999999999999998876553
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.75 E-value=11 Score=40.71 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcH-HHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhh
Q 009829 368 FLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHF-QVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHW 446 (524)
Q Consensus 368 FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hf-QVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HW 446 (524)
.+.=|..++..+.. ++......++..+-..+.+.+. .|-+.|+..|. .+.......-...+|-++|.|..... +=
T Consensus 576 ~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l~-~~ 651 (861)
T 2bpt_A 576 ILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYLLKALN-QV 651 (861)
T ss_dssp HHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHhc-cc
Confidence 44455555555543 5666667778887788877766 67777776654 23333322222234444555544332 11
Q ss_pred hHHHHHHHHHHHH
Q 009829 447 NQAVHSLTLNVRK 459 (524)
Q Consensus 447 n~~V~~la~nvlk 459 (524)
+..++..+..++.
T Consensus 652 ~~~vr~~a~~~l~ 664 (861)
T 2bpt_A 652 DSPVSITAVGFIA 664 (861)
T ss_dssp TSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 2235555555444
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=89.46 E-value=3.5 Score=45.65 Aligned_cols=221 Identities=13% Similarity=0.117 Sum_probs=119.7
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhc--cccccCHHH-HHHHHHHHhcccCCCCH
Q 009829 228 ILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFE--TERHNGIAE-FLEILGSIINGFALPLK 304 (524)
Q Consensus 228 v~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyE--te~hnGIaE-LLeIlgSIInGFalPLK 304 (524)
+.++|...-|+|+..|......|..++. .-.|. ..+. ++.. +.....+-- ..-.|...|+..-.++.
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~-----~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~ 84 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFN-----NYLI-FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHH-----HHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh----CCCHH-----HHHH-HHHhccCCCChHHHHHHHHHHHHHHHHccCCCC
Confidence 4455555567888888888777776653 11111 1111 1111 111111100 01123334433224577
Q ss_pred HHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCc-----CcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhC
Q 009829 305 EEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDC-----KLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEAT 379 (524)
Q Consensus 305 eEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp-----~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~ 379 (524)
++.+.++...|+.+-..+. ..--.+++.|+......|+ .|...++..+ --.+..-.-.-+.-+..+++..
T Consensus 85 ~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp HHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999876433 4567789999999887762 3333333322 2222221122333444455444
Q ss_pred ChhHHH-----HhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccc---cccccchHHHHHHhhhhhhHHHH
Q 009829 380 QLPEFQ-----RCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRK---VILPIIFPALEKNARNHWNQAVH 451 (524)
Q Consensus 380 ~p~ef~-----~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~---~I~Pii~p~L~~~s~~HWn~~V~ 451 (524)
.+ .+. .....++..+.+|+.+++..|-..|+....+ ++..... ..++-+++.|.+..... +..||
T Consensus 160 ~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~-----~~~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr 232 (852)
T 4fdd_A 160 AE-ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ-----FIISRTQALMLHIDSFIENLFALAGDE-EPEVR 232 (852)
T ss_dssp TT-HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT-----TTTTTCHHHHTSHHHHHHHHHHHHTCC-CHHHH
T ss_pred HH-HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HHhcccHHHHHHHHHHHHHHHHHcCCC-CHHHH
Confidence 32 222 1234456666678889999998888765542 1211111 22334556665544322 56789
Q ss_pred HHHHHHHHHHHhhCHHHHH
Q 009829 452 SLTLNVRKIFFDLDPELFK 470 (524)
Q Consensus 452 ~la~nvlkil~e~D~~lf~ 470 (524)
..++.++..+.+..|+.+.
T Consensus 233 ~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 233 KNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHHhCHHHHH
Confidence 9999998888888776554
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.91 E-value=34 Score=37.13 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=45.1
Q ss_pred HHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCc--HHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHhhhhh
Q 009829 369 LNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLH--FQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNARNHW 446 (524)
Q Consensus 369 L~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~h--fQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s~~HW 446 (524)
+.=+..++..+..++|...+..++..+..++.+.+ -.|-+.|+..+.+ +..-....-...++-++|.|......+=
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 34455555556557788888888888888888764 2466777765432 1221222222223334455544433221
Q ss_pred hHHHHHHHHHHHHH
Q 009829 447 NQAVHSLTLNVRKI 460 (524)
Q Consensus 447 n~~V~~la~nvlki 460 (524)
+..||..+..++..
T Consensus 663 ~~~vr~~a~~~l~~ 676 (876)
T 1qgr_A 663 EYQVCLAAVGLVGD 676 (876)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34566655544433
No 12
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.73 E-value=14 Score=41.29 Aligned_cols=200 Identities=13% Similarity=0.168 Sum_probs=104.6
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHH---hccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCH
Q 009829 228 ILKLLDLFDSEDPREREYLKTILHRI---YGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLK 304 (524)
Q Consensus 228 v~~Ll~lfdSeDpRERd~LKtiLHrI---YgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLK 304 (524)
+.++++.+. .|++.++.+-.+++++ ||.-+ .+|+-..+..++-.|- . .+++.+|.+++.++..|+..
T Consensus 688 ~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~~f~~~-- 757 (963)
T 2x19_B 688 IQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMYS--T---IPQASALDLTRQLVHIFAHE-- 757 (963)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHHHhCCC--
Confidence 334555433 5667777777777773 44322 3555555443333322 1 24678999999999855431
Q ss_pred HHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCc----CcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCC
Q 009829 305 EEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDC----KLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQ 380 (524)
Q Consensus 305 eEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp----~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~ 380 (524)
+.+. +.+..+.+.+..|+...+.+|+ .+... |+.-+..++....
T Consensus 758 ------------~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~-------------------~f~ll~~~~~~~~ 805 (963)
T 2x19_B 758 ------------PAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDIVDS-------------------FMQLLAQALKRKP 805 (963)
T ss_dssp ------------TTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHH-------------------HHHHHHHHHHHCG
T ss_pred ------------cchH-HHHHHHHHHHHHHHHHHHhhCcccCchHHHH-------------------HHHHHHHHHHhCc
Confidence 0000 1223344556667666666543 23222 3333344443322
Q ss_pred hhHH-HHh-hHHHHHHHHHHhCCCcHHHHHHHHhhhcc--------hHHHHHHHhccccccccchHHHH-HHhhhhhhHH
Q 009829 381 LPEF-QRC-MVPLFQQIARCLNSLHFQVAERALFLWNN--------DHIENLIIQNRKVILPIIFPALE-KNARNHWNQA 449 (524)
Q Consensus 381 p~ef-~~i-~~pLF~~la~Ci~S~hfQVAErAL~lWnN--------e~i~~li~~n~~~I~Pii~p~L~-~~s~~HWn~~ 449 (524)
..-+ ... ...++..+..++..+|.-|+..|+.+|.+ +.+..++...-..++..++..+. ...+..|+
T Consensus 806 ~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-- 883 (963)
T 2x19_B 806 DLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-- 883 (963)
T ss_dssp GGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH--
T ss_pred HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH--
Confidence 1111 111 34577888889999999999999998863 34444444443333333333332 12245554
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHH
Q 009829 450 VHSLTLNVRKIFFDLDPELFKECLA 474 (524)
Q Consensus 450 V~~la~nvlkil~e~D~~lf~~~~~ 474 (524)
....++..+...++..+.+...
T Consensus 884 ---~~~~il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 884 ---CFADILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp ---HHHHHHHHHHHHSHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHChHHHHHHHH
Confidence 2223344445556666665544
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=85.61 E-value=47 Score=36.57 Aligned_cols=278 Identities=10% Similarity=0.114 Sum_probs=146.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHh---ccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCC
Q 009829 225 QSFILKLLDLFDSEDPREREYLKTILHRIY---GKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFAL 301 (524)
Q Consensus 225 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY---gKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFal 301 (524)
...+..|+..++..+.+....+-+.+..|. |.-+....++...+.-++..+-.-.+....+..+++++++|......
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~ 561 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS 561 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhH
Confidence 455666777777666666555445444443 22233344666555444432222122223344678888888765432
Q ss_pred CCHHHHHHHHHH---Hhh------------c-CCCCCCchhc---hHHHHHHHHHHHHhCcC-cH--HHHHHHhhhcCCC
Q 009829 302 PLKEEHKVFLVR---VLI------------P-LHKPKSLAMY---HQQLSYCITQFVEKDCK-LA--DAVIRGLLKYWPV 359 (524)
Q Consensus 302 PLKeEHk~FL~r---vLi------------P-LHk~k~~~~Y---h~qL~yCi~qFveKDp~-L~--~~vi~gLLk~WP~ 359 (524)
-+.+.-...+.+ .|- | ....+..... -..|.. +.+-+..+-. +. ..++..++..|.-
T Consensus 562 ~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~-l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 640 (852)
T 4fdd_A 562 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG-LAEGLGGNIEQLVARSNILTLMYQCMQD 640 (852)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH-HHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHH-HHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence 222111111111 110 1 0111111111 122222 2233332211 00 2456667777755
Q ss_pred CCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHH
Q 009829 360 TNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALE 439 (524)
Q Consensus 360 tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~ 439 (524)
.++.=......-+.++...+. .+|...+..+...+.++++...+.|-..| .|-=-.+...+..+-...++-+++.|.
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a--~~alg~i~~~~~~~~~p~~~~il~~L~ 717 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNA--TWAIGEISIQMGIEMQPYIPMVLHQLV 717 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHH--HHHHHHHHHHHGGGGGGGTHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHH--HHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 444433355666777776664 68888888888889999988888876555 444445555554444444555667766
Q ss_pred HHhh-hhhhHHHHHHHHHHHHHHHhhCHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCC
Q 009829 440 KNAR-NHWNQAVHSLTLNVRKIFFDLDPELFK----ECLAKFREYESKEGEIEARREATWKRLEELAEGNVPI 507 (524)
Q Consensus 440 ~~s~-~HWn~~V~~la~nvlkil~e~D~~lf~----~~~~~~~~~~~~~~~~~~kr~~~W~~l~~~A~~~~~~ 507 (524)
+..+ .+-+.+|+.-+...+--|....|+... ++...+-..-. .....++++..-+.+-.+...++.+
T Consensus 718 ~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~-~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 718 EIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR-NIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH-TSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhChHh
Confidence 6543 256778888888888888888877653 33333322111 1111234566777777777777754
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=81.85 E-value=38 Score=33.43 Aligned_cols=231 Identities=13% Similarity=0.083 Sum_probs=109.3
Q ss_pred hhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHH-HHHHHHHhHhhhccccccCHHHHHHHHHHHhc
Q 009829 219 AKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIR-KAINNIFYRFIFETERHNGIAEFLEILGSIIN 297 (524)
Q Consensus 219 ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIR-k~Innif~~fiyEte~hnGIaELLeIlgSIIn 297 (524)
.+..++...+-.|+.++.++|+.-|...-.+|..|-......|..+. ..+-..+.+++..+....-....+..|+.+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 34445566888999999999999999988888888765443444332 22234555555432222223456677777775
Q ss_pred ccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhC---------cCcHHHHHHHhhhcCCCCCChhHHHH
Q 009829 298 GFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKD---------CKLADAVIRGLLKYWPVTNSSKEVMF 368 (524)
Q Consensus 298 GFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKD---------p~L~~~vi~gLLk~WP~tns~KEv~F 368 (524)
+-....+.....-....|+.+.+...-. -......++......+ ..+...++..| + ..+..-...-
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~~~v~~~a 254 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-M---HNDYKVVSPA 254 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-T---CSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-C---CCchhHHHHH
Confidence 5311111111111223334443332211 1112223333332222 12333334332 2 1111111111
Q ss_pred HHHHHHHHhhCChhHHHHhh-HHHHHHHHHHhCCCcHHHHHHHHhhhcc------hHHHHHHHhccccccccchHHHHHH
Q 009829 369 LNELEEVLEATQLPEFQRCM-VPLFQQIARCLNSLHFQVAERALFLWNN------DHIENLIIQNRKVILPIIFPALEKN 441 (524)
Q Consensus 369 L~EleeiLe~~~p~ef~~i~-~pLF~~la~Ci~S~hfQVAErAL~lWnN------e~i~~li~~n~~~I~Pii~p~L~~~ 441 (524)
+.-|..+.. -.+...+.+. ..+...|..++.+++..|-+.|+....| +....++. ..++|.++..|..
T Consensus 255 ~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~l~~- 329 (450)
T 2jdq_A 255 LRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID---ANIFPALISILQT- 329 (450)
T ss_dssp HHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTHHHHHHHHHHH-
T ss_pred HHHHHHHhh-CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHhc-
Confidence 112222211 1122222221 1366777888889988888888776533 22222222 2345555554432
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q 009829 442 ARNHWNQAVHSLTLNVRKIFFD 463 (524)
Q Consensus 442 s~~HWn~~V~~la~nvlkil~e 463 (524)
=+..||..+..++.-+..
T Consensus 330 ----~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 330 ----AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp ----SCHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHc
Confidence 245666666666655543
No 15
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.49 E-value=21 Score=35.35 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhH
Q 009829 304 KEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPE 383 (524)
Q Consensus 304 KeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~e 383 (524)
.+|+...|...+.+.-.+ +...+...+|.+--...+..|.+ .++. .+++
T Consensus 32 ~~e~v~~L~~~~~~~~~~-----------~~~~~lfs~d~k~~~~ale~L~~-------------------~l~~-~~~~ 80 (266)
T 2of3_A 32 TDEHISQLQTLLGNQAKV-----------SLMSQLFHKDFKQHLAALDSLVR-------------------LADT-SPRS 80 (266)
T ss_dssp CHHHHHHHHHHHHTTBCH-----------HHHHHHTCSCHHHHHHHHHHHHH-------------------HHHH-CHHH
T ss_pred CHHHHHHHHHHHHHhccH-----------HHHHHhcCCCHHHHHHHHHHHHH-------------------Hhhh-ChHH
Confidence 455555555555544222 33455666665444444444333 3333 4555
Q ss_pred HHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhcc-ccc---cccchHHHHHHhhhhhhHHHHHHHHHHHH
Q 009829 384 FQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNR-KVI---LPIIFPALEKNARNHWNQAVHSLTLNVRK 459 (524)
Q Consensus 384 f~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~-~~I---~Pii~p~L~~~s~~HWn~~V~~la~nvlk 459 (524)
...+..-+|+-++-=+.+.|++|+.++|.+.. +++..+.+.. +.. ..+++|.|..-. +|=.+.||..+..+++
T Consensus 81 ~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl-Gd~k~~vR~~~r~il~ 157 (266)
T 2of3_A 81 LLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT-GEAKDNMRTSVRDIVN 157 (266)
T ss_dssp HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-GCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHH
Confidence 55556667887765556789999999999886 4444444422 111 356677775433 6778999999999999
Q ss_pred HHHhh-CHH-HHHHHHHHH
Q 009829 460 IFFDL-DPE-LFKECLAKF 476 (524)
Q Consensus 460 il~e~-D~~-lf~~~~~~~ 476 (524)
.++++ -|. +|+.+...+
T Consensus 158 ~l~~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 158 VLSDVVGPLKMTPMLLDAL 176 (266)
T ss_dssp HHHHHHCHHHHHHHHHHGG
T ss_pred HHHHHCCHHHHHHHHHHHH
Confidence 99985 454 777776544
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.75 E-value=37 Score=39.20 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHh-------ccccccccchH
Q 009829 364 KEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQ-------NRKVILPIIFP 436 (524)
Q Consensus 364 KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~-------n~~~I~Pii~p 436 (524)
-..--+..+..+++...++.|.....++...|..|+...+..|+..|+..+. .++..+.. .-...++.++|
T Consensus 493 v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll~ 570 (1230)
T 1u6g_C 493 LKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLFT 570 (1230)
T ss_dssp HHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHHH
Confidence 3445577788888888888888888888888888999999999887876654 33333322 11112334455
Q ss_pred HHHHHh-hhhhhHHHHHHHHHHHHHHHhh
Q 009829 437 ALEKNA-RNHWNQAVHSLTLNVRKIFFDL 464 (524)
Q Consensus 437 ~L~~~s-~~HWn~~V~~la~nvlkil~e~ 464 (524)
.|.... ....+..||..+..++..+.+.
T Consensus 571 ~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 571 CTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 554433 2467888998888888777654
No 17
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=70.16 E-value=12 Score=33.39 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=59.8
Q ss_pred HHHHhCcCcHHHHHHHhhhcCCCC--CChhHHHHHHHHHHHHhhCC-------hhHHHHhhHHHHHHHHHHhCCCcHHHH
Q 009829 337 QFVEKDCKLADAVIRGLLKYWPVT--NSSKEVMFLNELEEVLEATQ-------LPEFQRCMVPLFQQIARCLNSLHFQVA 407 (524)
Q Consensus 337 qFveKDp~L~~~vi~gLLk~WP~t--ns~KEv~FL~EleeiLe~~~-------p~ef~~i~~pLF~~la~Ci~S~hfQVA 407 (524)
+|+-....-++.++..++++==.. ++.|-+-+|.-+.+|+...- -..|.++++++|..+....++.+-+..
T Consensus 27 ~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv 106 (142)
T 2km4_A 27 KWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKL 106 (142)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444445555555555544443 67899999999999997542 246889999999999888788888999
Q ss_pred HHHHhhhcchH
Q 009829 408 ERALFLWNNDH 418 (524)
Q Consensus 408 ErAL~lWnNe~ 418 (524)
+|-+.+|..-.
T Consensus 107 ~rvl~iWeer~ 117 (142)
T 2km4_A 107 SRVVNILKERN 117 (142)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhhccC
Confidence 99999997533
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=68.57 E-value=35 Score=36.42 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=107.0
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHH
Q 009829 226 SFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKE 305 (524)
Q Consensus 226 ~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKe 305 (524)
..+..|++.+.+.|..-|..+-.-++++-.||...-.|+- +.+.+++-.. .-.-..|.+..++.|+.++. -+++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v----~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p-~~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV----STLLDLIQTK-VNYVVQEAIVVIRDIFRKYP-NKYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSC-SSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH----HHHHHHHccc-chHHHHHHHHHHHHHHHHCc-chHH
Confidence 3566788888888998888888888888878753322322 4555555322 11224677778888887763 2222
Q ss_pred HHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHH
Q 009829 306 EHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQ 385 (524)
Q Consensus 306 EHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~ 385 (524)
.-...|...|-. . ..+.-.....+|+-+|.+.-+. ...+++.+++-+...++.=+...|.-+-.+....+ ++.+
T Consensus 427 ~~v~~L~~~l~~---~-~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p-~~~~ 500 (591)
T 2vgl_B 427 SIIATLCENLDS---L-DEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP-SETQ 500 (591)
T ss_dssp TTHHHHHHTTTT---C-CSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC-STTH
T ss_pred HHHHHHHHHHHh---c-cCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc-hHHH
Confidence 222233333211 1 1222356777888888665443 57899999988876665555566666766665543 3333
Q ss_pred HhhHHHHHHHHHHh-CCCcHHHHHHHHhhhc
Q 009829 386 RCMVPLFQQIARCL-NSLHFQVAERALFLWN 415 (524)
Q Consensus 386 ~i~~pLF~~la~Ci-~S~hfQVAErAL~lWn 415 (524)
..+..+ +..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHHHHHH
Confidence 333333 34554 5789999999998875
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=65.84 E-value=68 Score=36.94 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhc-cccCChHHHHHHHHHHHhHhhhccccccCH-HHHHHHHHHHhcccCCCCH
Q 009829 227 FILKLLDLFDSEDPREREYLKTILHRIYG-KFMVHRPFIRKAINNIFYRFIFETERHNGI-AEFLEILGSIINGFALPLK 304 (524)
Q Consensus 227 Fv~~Ll~lfdSeDpRERd~LKtiLHrIYg-Kf~~~R~fIRk~Innif~~fiyEte~hnGI-aELLeIlgSIInGFalPLK 304 (524)
-+.+||+-+.|+|+..|-.--.-|...+. .+....+-..+.+-..+.+.+... ...+ ..-...++.++.+..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~---- 80 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVK---- 80 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCC----
Confidence 35678888999999998865444444332 222222222222223334444211 1111 123456677776543
Q ss_pred HHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCcC----------cHHHHHHHhhhcCC-CCCChhHHHHHHHHH
Q 009829 305 EEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDCK----------LADAVIRGLLKYWP-VTNSSKEVMFLNELE 373 (524)
Q Consensus 305 eEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~----------L~~~vi~gLLk~WP-~tns~KEv~FL~Ele 373 (524)
+++...+...|+.......-.. ......|+.++++.-+. ....++..|++.== ..+.....-=+.-+.
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 3555555666666543333222 23345666666654332 12333333332111 111122222233344
Q ss_pred HHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHH
Q 009829 374 EVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKN 441 (524)
Q Consensus 374 eiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~ 441 (524)
++++... ..+......+...+..++.+++..|-++|+... ..++.......++-+++.|.+.
T Consensus 160 ~~~~~~~-~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al-----~~l~~~~~~~~~~~~l~~l~~~ 221 (1230)
T 1u6g_C 160 DMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL-----GHLVMSCGNIVFVDLIEHLLSE 221 (1230)
T ss_dssp HHHHHTC-SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH-----HHHTTTC----CTTHHHHHHHH
T ss_pred HHHHHhH-hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----HHHHHhcCHHHHHHHHHHHHHH
Confidence 4443221 222233456777777888899999988887532 2333333333344444554433
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.60 E-value=1.1e+02 Score=29.96 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhcc--ccccccchHHHH
Q 009829 372 LEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNR--KVILPIIFPALE 439 (524)
Q Consensus 372 leeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~--~~I~Pii~p~L~ 439 (524)
|..+.+.+.++.+...+..++..|..++.++|..|-.+|+.... .+...+.... ..-++-++|.|.
T Consensus 390 l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~--~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 390 FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHHHHH
Confidence 34444444444455555667888888999999998888876543 3444443321 123444455554
No 21
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=58.14 E-value=18 Score=31.40 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=60.7
Q ss_pred HHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCC------hhHHHHhhHHHHHHHHHHhCCCcHHHHH
Q 009829 335 ITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQ------LPEFQRCMVPLFQQIARCLNSLHFQVAE 408 (524)
Q Consensus 335 i~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~------p~ef~~i~~pLF~~la~Ci~S~hfQVAE 408 (524)
+++|+-...+-++.++..+.++=-.+.+.+-+-+|.-+.+|+-..- ...|++++.++|..+.+.....+-+...
T Consensus 26 ~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~ 105 (135)
T 4fu3_A 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLE 105 (135)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444455566666666666556677788999999999986431 1458889999999998888888888889
Q ss_pred HHHhhhcc
Q 009829 409 RALFLWNN 416 (524)
Q Consensus 409 rAL~lWnN 416 (524)
|-+.+|..
T Consensus 106 kll~iW~~ 113 (135)
T 4fu3_A 106 RLLNIWQE 113 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999984
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=56.58 E-value=1.8e+02 Score=29.82 Aligned_cols=186 Identities=10% Similarity=0.036 Sum_probs=93.5
Q ss_pred ccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHH-HHHHHHhHhhhccccccCHHHHHHHHHHHhccc
Q 009829 221 RYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRK-AINNIFYRFIFETERHNGIAEFLEILGSIINGF 299 (524)
Q Consensus 221 ~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk-~Innif~~fiyEte~hnGIaELLeIlgSIInGF 299 (524)
..++...|-.|+.++.++|+.=|...-..|..|-+.-...|..+.. .+-..+.+.+.. ....-....+..|+.+..+-
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCC
Confidence 3344456777888888899999999888888887654334443322 122344444433 11122345667788877664
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHHHHHhCc---------CcHHHHHHHhhhcCCCCCChhHHHHHH
Q 009829 300 ALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQFVEKDC---------KLADAVIRGLLKYWPVTNSSKEVMFLN 370 (524)
Q Consensus 300 alPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp---------~L~~~vi~gLLk~WP~tns~KEv~FL~ 370 (524)
..........-....|+.|.....- .-......|+......++ .+...++.. +++ .+ .++ ..
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~---~~--~~v--~~ 317 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH---ES--TLV--QT 317 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC---SC--HHH--HH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC---CC--hhh--HH
Confidence 2222333333344556666555432 122223344444443332 233333333 322 11 111 11
Q ss_pred HHHHHHhh-C--ChhHHHHhh-HHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 009829 371 ELEEVLEA-T--QLPEFQRCM-VPLFQQIARCLNSLHFQVAERALFLWNN 416 (524)
Q Consensus 371 EleeiLe~-~--~p~ef~~i~-~pLF~~la~Ci~S~hfQVAErAL~lWnN 416 (524)
..-.+|.. . .+...+.+. ..+...|..++.+++..|-+.|+....|
T Consensus 318 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11112221 1 222222222 2456677888899999998888766544
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=56.31 E-value=74 Score=30.20 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=61.2
Q ss_pred HHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccc------ccc-ccchHHHHHHhhh
Q 009829 372 LEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRK------VIL-PIIFPALEKNARN 444 (524)
Q Consensus 372 leeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~------~I~-Pii~p~L~~~s~~ 444 (524)
+..+++.++|.........++..|..++.+.+.||=+.|+.+.. .++..... ..+ |-++|.|.+.. +
T Consensus 128 l~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~-----~~~~~~~~~~~~l~~~l~~~iip~l~~~l-~ 201 (249)
T 2qk1_A 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN-----ASMKEEKDGYSTLQRYLKDEVVPIVIQIV-N 201 (249)
T ss_dssp HHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH-----HHHHHCCSCSHHHHHHHTTTHHHHHHHHH-T
T ss_pred HHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-----HHHHHcCCcchhHHHHHHHHHHHHHHHHh-c
Confidence 55566666552211114456777778899999999999987654 33333321 135 77888887765 3
Q ss_pred hhhHHHHHHHHHHHHHHHh-hCHHHHHHHHHH
Q 009829 445 HWNQAVHSLTLNVRKIFFD-LDPELFKECLAK 475 (524)
Q Consensus 445 HWn~~V~~la~nvlkil~e-~D~~lf~~~~~~ 475 (524)
+=+..||..|...+-.++. +..+-|......
T Consensus 202 D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 202 DTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4488899999988877663 333344444443
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=52.31 E-value=1.6e+02 Score=33.17 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCC-----ChhHHHHHHHHHHHHhcccc-CChHHHHHHHHHHH---hHhhhccccccCHHHHHHHHHHHh
Q 009829 226 SFILKLLDLFDSE-----DPREREYLKTILHRIYGKFM-VHRPFIRKAINNIF---YRFIFETERHNGIAEFLEILGSII 296 (524)
Q Consensus 226 ~Fv~~Ll~lfdSe-----DpRERd~LKtiLHrIYgKf~-~~R~fIRk~Innif---~~fiyEte~hnGIaELLeIlgSII 296 (524)
..+.+|+.+++.. +..|.+++-..|.++-..+- ...||+-..+..+. .+..-..+...=...++|.+|+|+
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 3556677777664 22256677777766644321 12345444443222 221111111111245899999999
Q ss_pred cc
Q 009829 297 NG 298 (524)
Q Consensus 297 nG 298 (524)
..
T Consensus 628 ~~ 629 (960)
T 1wa5_C 628 NY 629 (960)
T ss_dssp HT
T ss_pred hc
Confidence 86
No 25
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=51.23 E-value=1.5e+02 Score=33.72 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 009829 383 EFQRCMVPLFQQIARCLNSLHFQVAERALFLWNN 416 (524)
Q Consensus 383 ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnN 416 (524)
++...+..++..+-.|...++-.|+..|+.+|..
T Consensus 337 ~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 337 SLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp GGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3455556788888889888999999999999963
No 26
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=50.54 E-value=2.5e+02 Score=31.35 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 009829 388 MVPLFQQIARCLNSLHFQVAERALFLWNN 416 (524)
Q Consensus 388 ~~pLF~~la~Ci~S~hfQVAErAL~lWnN 416 (524)
+..+|.....|+..+|.-++..|+.+|.+
T Consensus 827 l~~i~~~~~~~l~~~~~~~~~s~~~fl~~ 855 (971)
T 2x1g_F 827 YDRLVFYAQRGMTLPESGAIRNSIQFLTH 855 (971)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45678888889998998889999999965
No 27
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=49.81 E-value=2.3e+02 Score=28.95 Aligned_cols=159 Identities=15% Similarity=0.093 Sum_probs=98.6
Q ss_pred cccCHHHHHHHHHHHhcccCCCCHHHHHHHHH--HHhhcCCCCCCchhchHHHHHHHHHHHHhCcCcHHHHHHHhhhcCC
Q 009829 281 RHNGIAEFLEILGSIINGFALPLKEEHKVFLV--RVLIPLHKPKSLAMYHQQLSYCITQFVEKDCKLADAVIRGLLKYWP 358 (524)
Q Consensus 281 ~hnGIaELLeIlgSIInGFalPLKeEHk~FL~--rvLiPLHk~k~~~~Yh~qL~yCi~qFveKDp~L~~~vi~gLLk~WP 358 (524)
.+.|-.|..+++-.+++-|+.+-.+.-|.-+. ..+.+. .+.+..++..+.||-.=..++++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~----------~~e~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI----------AEDVIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT----------SSCGGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhhcCCCcHhHHHHH----
Confidence 46677889999999999999887776555443 334443 22334667777887666667888874
Q ss_pred CCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHH
Q 009829 359 VTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPAL 438 (524)
Q Consensus 359 ~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L 438 (524)
|.=|-.| .+++ +..++.+-+-+|+.+.|.-|.-.|+.-. ..++..+...+- -.+..+
T Consensus 125 ----------LRtL~~I---~~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~-----~kL~~~~pe~v~-~~~~~l 181 (355)
T 3tjz_B 125 ----------VRALCQI---TDST----MLQAIERYMKQAIVDKVPSVSSSALVSS-----LHLLKCSFDVVK-RWVNEA 181 (355)
T ss_dssp ----------HHHHHHH---CCTT----THHHHHHHHHHHHTCSSHHHHHHHHHHH-----HHHTTTCHHHHH-TTHHHH
T ss_pred ----------HHHHhcC---CCHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH-----HHHhccCHHHHH-HHHHHH
Confidence 2222222 2333 3456778889999999999999998763 344444433221 223333
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 009829 439 EKNARNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFR 477 (524)
Q Consensus 439 ~~~s~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~ 477 (524)
.... .-=|..|+.-|..++--+.+.|+..+..+...+.
T Consensus 182 ~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 182 QEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 3322 1225566666666666666677777766655543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=48.75 E-value=2.3e+02 Score=28.82 Aligned_cols=105 Identities=16% Similarity=0.079 Sum_probs=60.3
Q ss_pred HHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHH-HHHHHHhHhhhccccccCHHHHHHHHHHH
Q 009829 217 KLAKRYIDQSFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRK-AINNIFYRFIFETERHNGIAEFLEILGSI 295 (524)
Q Consensus 217 k~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~fIRk-~Innif~~fiyEte~hnGIaELLeIlgSI 295 (524)
...+..++...|-.|+.++.++|+.=|+..-..|..|-+.-...|..+.. -+-..+.+.+..+....-......+|+.+
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33444455567888999999999999999988988887544444444433 11123444443332333345567777777
Q ss_pred hcccCCCCHHHHHHHHHHHhhcCCCCC
Q 009829 296 INGFALPLKEEHKVFLVRVLIPLHKPK 322 (524)
Q Consensus 296 InGFalPLKeEHk~FL~rvLiPLHk~k 322 (524)
..+...+- .....-....|+.|....
T Consensus 231 ~~~~~~~~-~~~~~~~l~~L~~lL~~~ 256 (528)
T 4b8j_A 231 CRGKPQPS-FEQTRPALPALARLIHSN 256 (528)
T ss_dssp HCSSSCCC-HHHHTTHHHHHHHHTTCC
T ss_pred HcCCCCCc-HHHHHHHHHHHHHHHCCC
Confidence 77653222 222223344555555443
No 29
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=47.09 E-value=3.5e+02 Score=30.34 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccc
Q 009829 225 QSFILKLLDLFDSEDPREREYLKTILHRIYGKF 257 (524)
Q Consensus 225 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf 257 (524)
+.++-.|+.++.|.|+..+...-.+||.|..++
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888887777888887755
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=44.73 E-value=2.2e+02 Score=30.49 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh--------------CcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHH
Q 009829 330 QLSYCITQFVEK--------------DCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQI 395 (524)
Q Consensus 330 qL~yCi~qFveK--------------Dp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~l 395 (524)
-.++|+-+|.+. +|+.+..+++.+++.+ ..++.=+...|.=+..+.-..+ +. + ..+-..|
T Consensus 480 ~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~-~~-~---~~l~~~L 553 (618)
T 1w63_A 480 VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFT-CT-V---NRIKKVV 553 (618)
T ss_dssp HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCS-SC-H---HHHHHHH
T ss_pred HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCc-ch-H---HHHHHHH
Confidence 467778777642 2344555666666655 2232223333444444433332 22 2 2344456
Q ss_pred HHHhCCCcHHHHHHHHhhhc
Q 009829 396 ARCLNSLHFQVAERALFLWN 415 (524)
Q Consensus 396 a~Ci~S~hfQVAErAL~lWn 415 (524)
..|..|.+..|=+||..+|+
T Consensus 554 ~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 554 SIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp HHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 77899999999999999987
No 31
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=43.16 E-value=1.3e+02 Score=33.54 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCC-----CcHHHHHHHHhhhcc
Q 009829 389 VPLFQQIARCLNS-----LHFQVAERALFLWNN 416 (524)
Q Consensus 389 ~pLF~~la~Ci~S-----~hfQVAErAL~lWnN 416 (524)
..+...+..|... ..-.|+..|+.+|.+
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 366 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT 366 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence 4566777777764 345678889999974
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=41.34 E-value=95 Score=28.44 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhCC---hhHHHHhhHHHHHHHHHHhC-CCcHHHHHHHHhhhcchHHHHHHHhccccccccchHHHHHHh
Q 009829 367 MFLNELEEVLEATQ---LPEFQRCMVPLFQQIARCLN-SLHFQVAERALFLWNNDHIENLIIQNRKVILPIIFPALEKNA 442 (524)
Q Consensus 367 ~FL~EleeiLe~~~---p~ef~~i~~pLF~~la~Ci~-S~hfQVAErAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s 442 (524)
.=+..|..+++..+ ..++. .++..|.+++. ..|.+|.+.|+.... .+..-+...-....+.++|+|....
T Consensus 34 ~a~~~L~~l~~~~~~~~~~~~~----~i~~~L~~~l~kd~~~~V~~~a~~~l~--~la~~l~~~~~~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 34 ESLEVLEKLLTDHPKLENGEYG----ALVSALKKVITKDSNVVLVAMAGKCLA--LLAKGLAKRFSNYASACVPSLLEKF 107 (242)
T ss_dssp HHHHHHHHHHHHCSSBCCCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCCHH----HHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44567777776531 23333 45666677775 899999998887764 3333333332334455677777665
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 009829 443 RNHWNQAVHSLTLNVRKIFFDLDPELFKECLAKFREYESKEGEIEARREATWKRLEELAEG 503 (524)
Q Consensus 443 ~~HWn~~V~~la~nvlkil~e~D~~lf~~~~~~~~~~~~~~~~~~~kr~~~W~~l~~~A~~ 503 (524)
... ++.||..+..++.-+.+.-+ ++.+.......-. .+ .-.-|...+.-|...+..
T Consensus 108 ~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~-~~-~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 108 KEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLS-NK-NPSVKSETALFIARALTR 163 (242)
T ss_dssp GCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTT-CS-CHHHHHHHHHHHHHHHTT
T ss_pred cCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHc-CC-ChHHHHHHHHHHHHHHHH
Confidence 433 68899999999998877432 2333322222111 11 123345667777775544
No 33
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=39.34 E-value=64 Score=29.03 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=65.5
Q ss_pred HHHHhhhcCCCCCChhHHHHHHHHHHHHhhC-ChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chHHHH
Q 009829 349 VIRGLLKYWPVTNSSKEVMFLNELEEVLEAT-QLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN------NDHIEN 421 (524)
Q Consensus 349 vi~gLLk~WP~tns~KEv~FL~EleeiLe~~-~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn------Ne~i~~ 421 (524)
-|++--+.=|...+.|. |++|...+ +.++|..||.-|.+||.. ...+-.+.-.||.+.. .+.++.
T Consensus 9 ~VreAT~~d~wGP~~~~------m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 9 KVREATSNDPWGPSSSL------MSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp HHHHHTCSSSSCCCHHH------HHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHhCCCCCCCCHHH------HHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 34444444455555543 45667665 778999999999998752 2246777778887653 355555
Q ss_pred HHHhccccccccc-hHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q 009829 422 LIIQNRKVILPII-FPALEKNARNHWNQAVHSLTLNVRKIFFDL 464 (524)
Q Consensus 422 li~~n~~~I~Pii-~p~L~~~s~~HWn~~V~~la~nvlkil~e~ 464 (524)
-+.++...|..+- |.-+... -..|...||.-|..++.+|.|-
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~-g~D~G~~VR~kak~l~~Ll~D~ 123 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRD-GKDQGVNVREKAKQLVALLRDE 123 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTT-SCBCHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhhHHHhhhccceeeCCC-ccchHHHHHHHHHHHHHHHCCH
Confidence 5555543332210 1001112 2368899999999999999873
No 34
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.07 E-value=41 Score=30.34 Aligned_cols=93 Identities=14% Similarity=0.236 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chHHHHHHHhccccccccc-hHHHHHH
Q 009829 369 LNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN------NDHIENLIIQNRKVILPII-FPALEKN 441 (524)
Q Consensus 369 L~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn------Ne~i~~li~~n~~~I~Pii-~p~L~~~ 441 (524)
++||..+.-.-..+.+..||.-|++||.+ .|+| |--.||.+.. ++.|+.-+.+|...|=-.. |-....-
T Consensus 32 m~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp 107 (140)
T 1vdy_A 32 LEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDP 107 (140)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCT
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCc
Confidence 66666666544445578999889988876 3444 6777777654 5788888888865441111 1111010
Q ss_pred hh-hhhhHHHHHHHHHHHHHHHhhC
Q 009829 442 AR-NHWNQAVHSLTLNVRKIFFDLD 465 (524)
Q Consensus 442 s~-~HWn~~V~~la~nvlkil~e~D 465 (524)
.+ .-.++.||..|..++.++.+-+
T Consensus 108 ~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 108 LKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred ccccchhHHHHHHHHHHHHHHhCcC
Confidence 11 2467889999999998887654
No 35
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=37.47 E-value=24 Score=27.11 Aligned_cols=46 Identities=30% Similarity=0.467 Sum_probs=37.1
Q ss_pred HHHHHHhcccCCCCHHHHHHHHHHHhhcCCCCCCchhchHHHHHHHHH
Q 009829 290 EILGSIINGFALPLKEEHKVFLVRVLIPLHKPKSLAMYHQQLSYCITQ 337 (524)
Q Consensus 290 eIlgSIInGFalPLKeEHk~FL~rvLiPLHk~k~~~~Yh~qL~yCi~q 337 (524)
+++.|||+.- -|.++||.++...|=-.-..+.+..|||-|...|..
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 4667777643 478999999999888888889999999988776653
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=34.58 E-value=3.3e+02 Score=26.48 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=111.5
Q ss_pred HHHHHHhhcCCCC-ChhHHHHHHHHHHHHhccccCC-hHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCC
Q 009829 226 SFILKLLDLFDSE-DPREREYLKTILHRIYGKFMVH-RPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPL 303 (524)
Q Consensus 226 ~Fv~~Ll~lfdSe-DpRERd~LKtiLHrIYgKf~~~-R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPL 303 (524)
..+..|++++.++ |+.-|...-.+|..+...-... +.++..-+-..+.+.+... ...--...+.+|+.|..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~---- 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS---- 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC----
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC----
Confidence 6788889999888 8888888888888887532221 2233333334455554321 1111234567777777543
Q ss_pred HHHHHHHH-----HHHhhcCCCCCCchhchHHHHHHHHHHHHhC-cCc----HHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 009829 304 KEEHKVFL-----VRVLIPLHKPKSLAMYHQQLSYCITQFVEKD-CKL----ADAVIRGLLKYWPVTNSSKEVMFLNELE 373 (524)
Q Consensus 304 KeEHk~FL-----~rvLiPLHk~k~~~~Yh~qL~yCi~qFveKD-p~L----~~~vi~gLLk~WP~tns~KEv~FL~Ele 373 (524)
++++..+ ...|+.+.+...-.....+-..|+..+...+ |.. ...++..|++.-= +...++ ....-
T Consensus 139 -~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v--~~~a~ 213 (450)
T 2jdq_A 139 -TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF--VSDTDV--LADAC 213 (450)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT--CCCHHH--HHHHH
T ss_pred -HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc--cCCHHH--HHHHH
Confidence 2333332 2345555553222344455566666666443 321 1222222222211 111122 12222
Q ss_pred HHHhhC---ChhHHHHhh-HHHHHHHHHHhCCCcHHHHHHHHhhhcc-----hHHHHHHHhccccccccchHHHHHHhhh
Q 009829 374 EVLEAT---QLPEFQRCM-VPLFQQIARCLNSLHFQVAERALFLWNN-----DHIENLIIQNRKVILPIIFPALEKNARN 444 (524)
Q Consensus 374 eiLe~~---~p~ef~~i~-~pLF~~la~Ci~S~hfQVAErAL~lWnN-----e~i~~li~~n~~~I~Pii~p~L~~~s~~ 444 (524)
..|..+ .++....+. ..++..|..++.+....|.+.|+....| +.....+.+ .-++|.|.+...
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~- 286 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN------CSALQSLLHLLS- 286 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT------TTHHHHHHHHTT-
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH------CccHHHHHHHHc-
Confidence 222221 122222221 2356667778888888888887765432 222221111 123455554443
Q ss_pred hhhHHHHHHHHHHHHHHHhhCHH
Q 009829 445 HWNQAVHSLTLNVRKIFFDLDPE 467 (524)
Q Consensus 445 HWn~~V~~la~nvlkil~e~D~~ 467 (524)
|-+..|+.-+..++.-+..-++.
T Consensus 287 ~~~~~vr~~a~~~L~~l~~~~~~ 309 (450)
T 2jdq_A 287 SPKESIKKEACWTISNITAGNRA 309 (450)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHH
Confidence 34677888877777777654443
No 37
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=34.56 E-value=2.6e+02 Score=27.26 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHH--HHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHhCCCcHHHHH
Q 009829 331 LSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEV--MFLNELEEVLEATQLPEFQRCMVPLFQQIARCLNSLHFQVAE 408 (524)
Q Consensus 331 L~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv--~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci~S~hfQVAE 408 (524)
|.+.-..-+.+||.|...++++++-+ .+++.-|| .-.+.|+|+... .++-..+++..|... ++...-.|..
T Consensus 36 L~qa~el~~~~dp~ll~~~l~~il~~--~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~~L~~L----l~d~d~~V~K 108 (257)
T 3gs3_A 36 LAKVQETVLGSCAELAEEFLESVLSL--AHDSNMEVRKQVVAFVEQVCKV-KVELLPHVINVVSML----LRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHGG--GGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHH----TTCSCHHHHH
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HcCCCHHHHH
Confidence 44444445788999999999999987 33433332 233444454421 233233333333222 3445555555
Q ss_pred HHHhhhcchHHHHHHHhccccccccchHHHHHHh------hhhhhHHHHHHHHHHHHHH
Q 009829 409 RALFLWNNDHIENLIIQNRKVILPIIFPALEKNA------RNHWNQAVHSLTLNVRKIF 461 (524)
Q Consensus 409 rAL~lWnNe~i~~li~~n~~~I~Pii~p~L~~~s------~~HWn~~V~~la~nvlkil 461 (524)
+|... ...|||.+|--+..+. ...|+.. ..+-..++.++
T Consensus 109 ~~I~~-------------~~~iY~~~l~~i~~~~~~~~~~~~~W~~m-~~lK~~Il~~~ 153 (257)
T 3gs3_A 109 RVIQA-------------CGSIYKNGLQYLCSLMEPGDSAEQAWNIL-SLIKAQILDMI 153 (257)
T ss_dssp HHHHH-------------HHHHHHHHHHHHTTSSSCCHHHHHHHHHH-HHHHHHHHHGG
T ss_pred HHHHH-------------HHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHHHHH
Confidence 55443 4456777776666554 3678744 34555555553
No 38
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=32.85 E-value=98 Score=28.07 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=58.6
Q ss_pred HHHHHhhC-ChhHHHHhhHHHHHHHHHHhCCCcHHHHHHHHhhhc------chHHHHHHHhccccccccc-hHHHHHHhh
Q 009829 372 LEEVLEAT-QLPEFQRCMVPLFQQIARCLNSLHFQVAERALFLWN------NDHIENLIIQNRKVILPII-FPALEKNAR 443 (524)
Q Consensus 372 leeiLe~~-~p~ef~~i~~pLF~~la~Ci~S~hfQVAErAL~lWn------Ne~i~~li~~n~~~I~Pii-~p~L~~~s~ 443 (524)
+.+|...+ +..+|..||.-|.+||...- ..+-...-.||.+.. .+.++.-+.+|...|=.+- |.-.... -
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~-G 109 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQ-G 109 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHGGGGCCCBCTT-S
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhcccccCCC-C
Confidence 45666665 78999999999999987421 236777777876653 3555555555543331110 0001111 2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhC
Q 009829 444 NHWNQAVHSLTLNVRKIFFDLD 465 (524)
Q Consensus 444 ~HWn~~V~~la~nvlkil~e~D 465 (524)
..|-..||..|..++.+|.|-+
T Consensus 110 ~D~G~~VR~kak~l~~LL~D~e 131 (150)
T 3onk_A 110 RDQGINVRTRVKALIELLSDDN 131 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHTCHH
T ss_pred CchHHHHHHHHHHHHHHHcCHH
Confidence 3689999999999999998743
No 39
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=31.99 E-value=1.1e+02 Score=27.18 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCCh---hHHHHhhHHHHHHHHHHhCCCcH
Q 009829 328 HQQLSYCITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQL---PEFQRCMVPLFQQIARCLNSLHF 404 (524)
Q Consensus 328 h~qL~yCi~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p---~ef~~i~~pLF~~la~Ci~S~hf 404 (524)
.++...-++.++..+..-+..++..+.+|=-.+++.+-+-+|.-+..|+-.... ..|.+.+.++|...-.++....-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344455567777777777888887777777778899999999999999986643 45888889999988877665555
Q ss_pred HHHHHHHhhhcch
Q 009829 405 QVAERALFLWNND 417 (524)
Q Consensus 405 QVAErAL~lWnNe 417 (524)
+--.|-+..|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 5667888889844
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=29.33 E-value=4.5e+02 Score=26.45 Aligned_cols=68 Identities=15% Similarity=0.023 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhhhcchHHHHHHHhcc-ccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q 009829 391 LFQQIARCLNSLHFQVAERALFLWNNDHIENLIIQNR-KVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFFDL 464 (524)
Q Consensus 391 LF~~la~Ci~S~hfQVAErAL~lWnNe~i~~li~~n~-~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~e~ 464 (524)
+...+..++..++..|-..|+..+. .+..... ....+-++|.|...... =+..||..|...+..+.+.
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~-----~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLG-----EFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHH-----HHHHTSCHHHHHHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHhcHHhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHh
Confidence 4444445567777777777776553 3333332 23456677777765543 3677887777777666554
No 41
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=27.07 E-value=5.1e+02 Score=26.33 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhhcc------hHHHHHHHhccccccccchHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 009829 389 VPLFQQIARCLNSLHFQVAERALFLWNN------DHIENLIIQNRKVILPIIFPALEKNARNHWNQAVHSLTLNVRKIFF 462 (524)
Q Consensus 389 ~pLF~~la~Ci~S~hfQVAErAL~lWnN------e~i~~li~~n~~~I~Pii~p~L~~~s~~HWn~~V~~la~nvlkil~ 462 (524)
..+...|...+.+..-.|-+.|+....| +.+..++. ..+ +|.|..... |=+..|+..+..++.-+.
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~----v~~Lv~lL~-~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID---VRI----PKRLVELLS-HESTLVQTPALRAVGNIV 327 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH---TTC----HHHHHHGGG-CSCHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh---cCc----HHHHHHHHC-CCChhhHHHHHHHHHHHH
Confidence 3455566667778777887777655432 11222221 123 444444433 346678888887777777
Q ss_pred hhCHHH
Q 009829 463 DLDPEL 468 (524)
Q Consensus 463 e~D~~l 468 (524)
.-++..
T Consensus 328 ~~~~~~ 333 (530)
T 1wa5_B 328 TGNDLQ 333 (530)
T ss_dssp TSCHHH
T ss_pred cCCHHH
Confidence 655543
No 42
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=26.10 E-value=5e+02 Score=29.42 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCC--------chhchHHHHHHHHHHHHh-----CcCcHHHHHHHhhhcCCCCCChhH--H
Q 009829 302 PLKEEHKVFLVRVLIPLHKPKS--------LAMYHQQLSYCITQFVEK-----DCKLADAVIRGLLKYWPVTNSSKE--V 366 (524)
Q Consensus 302 PLKeEHk~FL~rvLiPLHk~k~--------~~~Yh~qL~yCi~qFveK-----Dp~L~~~vi~gLLk~WP~tns~KE--v 366 (524)
.|.+|.+..+...|+.+..... -...-.+|+.|+...... -|.+...++.. |-.....+| .
T Consensus 83 ~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~----~~~~~~~~~~~l 158 (1049)
T 3m1i_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGS----SSSSVNVCENNM 158 (1049)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHH----HTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHH----HccChHHHHHHH
Confidence 4667888887777776654321 123456777887776544 33433333333 211112244 2
Q ss_pred HHHHHHHHHHhhCCh------------hHHHHhhHHHHHHHHHHhCC-CcHHHHHHHHhh
Q 009829 367 MFLNELEEVLEATQL------------PEFQRCMVPLFQQIARCLNS-LHFQVAERALFL 413 (524)
Q Consensus 367 ~FL~EleeiLe~~~p------------~ef~~i~~pLF~~la~Ci~S-~hfQVAErAL~l 413 (524)
.+|.-|-|.+..... +.+..-...+|..+..|+.+ .+..|..+||..
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 333333322221211 23444456677777777754 345666666544
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=25.41 E-value=3.3e+02 Score=23.55 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHH-HHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcc
Q 009829 226 SFILKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPF-IRKAINNIFYRFIFETERHNGIAEFLEILGSIING 298 (524)
Q Consensus 226 ~Fv~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~~R~f-IRk~Innif~~fiyEte~hnGIaELLeIlgSIInG 298 (524)
.+...|..++.|+|+.-|...-..|..+-..-...|.. +..-+-..+.+++... ...-....+.+|+.+..|
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG 84 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC
Confidence 34456777778888888877777776665322222222 2212223444444322 111233456667776643
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=25.14 E-value=68 Score=36.99 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccC-ChHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHHhcccCCCCHHH
Q 009829 228 ILKLLDLFDSEDPREREYLKTILHRIYGKFMV-HRPFIRKAINNIFYRFIFETERHNGIAEFLEILGSIINGFALPLKEE 306 (524)
Q Consensus 228 v~~Ll~lfdSeDpRERd~LKtiLHrIYgKf~~-~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeE 306 (524)
+++.++.|. .|.+=||.....+||+..-+.. .-|++-+.|..+. ..-...+.++.|.++|.||..| |.+
T Consensus 704 il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll-----~~~~~~e~~~fL~l~~qli~~f----~~~ 773 (980)
T 3ibv_A 704 IFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL-----NSIDMNELVDVLSFISQLIHIY----KDN 773 (980)
T ss_dssp HHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH-----HHCCTTTHHHHHHHHHHHHHHT----TTT
T ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHH----HHH
Q ss_pred HHHHHHHHhhcC
Q 009829 307 HKVFLVRVLIPL 318 (524)
Q Consensus 307 Hk~FL~rvLiPL 318 (524)
+..+|...|-||
T Consensus 774 ~~~~l~~ll~~l 785 (980)
T 3ibv_A 774 MMEITNRMLPTL 785 (980)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 45
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.61 E-value=1.3e+02 Score=25.63 Aligned_cols=82 Identities=10% Similarity=0.246 Sum_probs=51.8
Q ss_pred HHHHHHhCcCcHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCC---hhHHHHhhHHHHHHHHHHh-CCCcHHHHHHH
Q 009829 335 ITQFVEKDCKLADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQ---LPEFQRCMVPLFQQIARCL-NSLHFQVAERA 410 (524)
Q Consensus 335 i~qFveKDp~L~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~---p~ef~~i~~pLF~~la~Ci-~S~hfQVAErA 410 (524)
+++++-...+-+..++..+.++=-.+.+.+-+-+|.-+.+|+.... ..+|.+...+.+..+-..+ ...+-+-..|-
T Consensus 27 ~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~l 106 (132)
T 4flb_A 27 LSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERI 106 (132)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445444555566666666666666778888999999999997642 2344443333333333333 44566677889
Q ss_pred Hhhhcc
Q 009829 411 LFLWNN 416 (524)
Q Consensus 411 L~lWnN 416 (524)
+.+|..
T Consensus 107 l~iW~~ 112 (132)
T 4flb_A 107 FKIWED 112 (132)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999984
No 46
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=22.05 E-value=7.7e+02 Score=26.62 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=44.2
Q ss_pred CcHHHHHHHhhhcCCCCCCh-----hHHHHHHHHHHHHhhCC-hhHHHHhhHHHHHHHHHHhCC
Q 009829 344 KLADAVIRGLLKYWPVTNSS-----KEVMFLNELEEVLEATQ-LPEFQRCMVPLFQQIARCLNS 401 (524)
Q Consensus 344 ~L~~~vi~gLLk~WP~tns~-----KEv~FL~EleeiLe~~~-p~ef~~i~~pLF~~la~Ci~S 401 (524)
.+...+.+.++-.|=..... .++-+|.-+.|+...+. .++-..+..++|..|-.++=-
T Consensus 260 kFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 260 RFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 34455667777777776665 78899999999998887 777778888899888776643
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=21.35 E-value=6.5e+02 Score=26.96 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=51.2
Q ss_pred hHHHH----HHHHHHHHh---CcCc-HHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhhCChhHHHHhhHHHHHHHHHHh
Q 009829 328 HQQLS----YCITQFVEK---DCKL-ADAVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQLPEFQRCMVPLFQQIARCL 399 (524)
Q Consensus 328 h~qL~----yCi~qFveK---Dp~L-~~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~p~ef~~i~~pLF~~la~Ci 399 (524)
+..+. +|+-+|.+. .+.. ...+++.+.+..+..++.=+...|.=+-.+.-.. |+ .+.. +-..+..|.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~~~---i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VKAT---IQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GHHH---HHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HHHH---HHHHHHHHh
Confidence 44555 888888543 3322 3467778877777666655556666555554333 32 2222 333344566
Q ss_pred C--CCcHHHHHHHHhhhc
Q 009829 400 N--SLHFQVAERALFLWN 415 (524)
Q Consensus 400 ~--S~hfQVAErAL~lWn 415 (524)
. +.+..|=+||..+|.
T Consensus 568 ~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHSCSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 6 999999999999986
Done!