Citrus Sinensis ID: 009831

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520----
Protein Sequence
MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNTLK
Secondary Structure (PSIPRED)
cccccccccHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHHHcccccccEccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHEcccccccccccEEccccccccccccHHHHHHHccccccccHHccccccccccccEcccccccccccccEEEEEccccccccccHHccccEEEcccccccEccccccccEccccHHHHHHHccccccEEEcccccEccccHHHHHHHHcccccccccHHHcccccccccccHHcHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdlkeglraetWAKSSLAENEmskrissnnpcftdfnsqqyqqkwedpsildydirinpafqefnqppqnqsslpcdptnqiknpfqmnenlqtnkmqdwdpkamLNNLSFLEQKIHELQDLVHLIVGRrsqilgrpdELVAQQQQLITADLTSIIVQLISTAgsllpsmkhtlsaatpsmgqlgqfggvpfppgaglsdsiQVQNSCAkkvsnqsnpidlvgnsgtqqnhaveehdlkdeddaddgeqlppgsyEILQLEkeeilaphthfcticgkgfkrdanlrmhmrghgdeyktpaalakphkesssepmlikryscpyagckrnkdhkkfqplktilcvknhykrthcdksyvcsrcntkkfSVIADLKTHekhcgkdkwlcscgttfsrkdkLFGHIAlfqghtpaipldetikglagpsdrregneatskigstnfnfgssvpngtgvsdmdakgnvddptnyfsplnfdtcnfdgfhefprppfddsenafsflipgscnyiqktggetslntlk
Flexible Loop (DISEMBL)
mdlkeglraetwaksslaenemskriSSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDeyktpaalakphkesssepmliKRYSCPYAGCkrnkdhkkfqplKTILcvknhykrthcdksyvcsrcnTKKFSVIADLKthekhcgkdkwlcSCGTTFSRKDKLFGHIALFQghtpaipldetIKGLAGPSDRREGNEAtskigstnfnfgssvpNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCnyiqktggetslntlk
Low Complexity Region (SEG)
MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVeehdlkdeddaddgeQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNTLK
Disordered region (IsUnstruct)
********************************FTDF***QYQQKWEDPSILDYDIRINPAF*****************************************KAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLL***************************************************************************************YEILQLEKEEILAPHTHFCTICGKGFKRDANLR****************************LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETI************************************************TNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQ************
Disordered Region (DISOPRED)
************************************************SILDYDIRINPAF*******************************************MLNNLSFLEQKIHELQDLV***************************************************************************************************************************************QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKT*********************SCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL********************************************************SPLNFDTCNFDGFH**************************************
Disordered Region (DISEMBL)
********AETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTP*************PMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAG**********TSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNTLK
Disordered Region (DISPRO)
*******************************CFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPC**T**************TNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSA*T*********************************VSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPF***ENAF************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNTLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	524	2.2.26 [Sep-21-2011]
Q9C8N5	499	Protein SENSITIVE TO PROT	yes	no	0.931	0.977	0.580	1e-165
Q943I6	522	Zinc finger protein STOP1	yes	no	0.845	0.848	0.560	1e-139
Q2QX40	465	Zinc finger protein STAR3	no	no	0.595	0.670	0.515	8e-86
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.332	0.373	0.311	2e-22
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.274	0.475	0.418	2e-22
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.265	0.274	0.344	6e-22
Q700D2	503	Zinc finger protein JACKD	no	no	0.322	0.335	0.333	1e-21
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.230	0.147	0.306	2e-10
O43313	823	ATM interactor OS=Homo sa	yes	no	0.284	0.181	0.280	5e-10
Q3UTQ7	1184	PR domain zinc finger pro	no	no	0.240	0.106	0.352	6e-08

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  582 bits (1500), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 308/531 (58%), Positives = 358/531 (67%), Gaps = 43/531 (8%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPA 60
           M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P 
Sbjct: 1   METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPG 56

Query: 61  FQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHEL 119
            QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+L
Sbjct: 57  LQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQL 95

Query: 120 QDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATP 179
           QDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLISTAGSLLPS+KH +S A  
Sbjct: 96  QDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPG 155

Query: 180 SMGQLGQFGGVPFP---PGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEH 236
                GQ G   FP       ++   Q  N+C  +  +   P+ LV     ++ H VEEH
Sbjct: 156 PF--TGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPV-LVDE---REGHVVEEH 209

Query: 237 DLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 296
           ++KDEDD ++GE LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE
Sbjct: 210 EMKDEDDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 269

Query: 297 YKTPAALAKPHKES--SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC 354
           YKT AALAKP+KES   SEPMLIKRYSCP+ GCKRNK+HKKFQPLKTILCVKNHYKRTHC
Sbjct: 270 YKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHC 329

Query: 355 DKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 414
           DKS+ CSRC+TKKFSVIADLKTHEKHCGK+KWLCSCGTTFSRKDKLFGHIALFQGHTPAI
Sbjct: 330 DKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 389

Query: 415 PLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNY--- 471
           PL+ET    +  + R       +  G   FN GS+        +    G  D    +   
Sbjct: 390 PLEETKPSASTSTQRGSSEGGNNNQGMVGFNLGSA---SNANQETTQPGMTDGRICFEES 446

Query: 472 FSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNT 522
           FSP+NFDTCNF GFHEFPR  FDDSE++F  LI  +C +  +  GE+  +T
Sbjct: 447 FSPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIANACGFSPRNVGESVSDT 497

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/482 (56%), Positives = 330/482 (68%), Gaps = 39/482 (8%)

Query: 59  PAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHE 118
           PAF        +   LP D   +I N F+ N +   N   DWDP+AML+NLSFLEQKI +
Sbjct: 53  PAFPPLFGVQSSSLYLPDDIEAKIGNQFESNPS-PNNPTMDWDPQAMLSNLSFLEQKIKQ 111

Query: 119 LQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAAT 178
           ++D+V  +  R SQ+ G   E  A+QQ L+TADLT II+QLISTAGSLLPSMK+ +S+  
Sbjct: 112 VKDIVQSMSNRESQVAGGSSEAQAKQQ-LVTADLTCIIIQLISTAGSLLPSMKNPISS-N 169

Query: 179 PSMGQLGQFGGVPFPPGAG------------------------LSDSIQVQNSCAKKVSN 214
           P++  L      P   G                          L +S+    + + ++ N
Sbjct: 170 PALRHLSNTLCAPMILGTNCNLRPSANDEATIPDISKTHDYEELMNSLNTTQAESDEMMN 229

Query: 215 QSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCT 274
             NP    G  G++    +E+HD+K+ DD  + E LPPGSY +LQLEKEEILAPHTHFC 
Sbjct: 230 CQNP---CGGEGSEP-IPMEDHDVKESDDGGERENLPPGSYVVLQLEKEEILAPHTHFCL 285

Query: 275 ICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHK 334
           ICGKGFKRDANLRMHMRGHGDEYKT AALAKP K+SS E   + RYSCPY GCKRNK+HK
Sbjct: 286 ICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHK 345

Query: 335 KFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTF 394
           KFQPLKTILCVKNHYKR+HCDKSY CSRCNTKKFSVIADLKTHEKHCG+DKWLCSCGTTF
Sbjct: 346 KFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTF 405

Query: 395 SRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEA-TSKIGSTNFNFGSSVPNG 453
           SRKDKLFGH+ALFQGHTPA+P+D+ IK + G S++ +G+EA  + +GS  +NF  S  + 
Sbjct: 406 SRKDKLFGHVALFQGHTPALPMDD-IK-VTGASEQPQGSEAMNTMVGSAGYNFPGS--SS 461

Query: 454 TGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQK 513
             + ++D K   DDP  YFSPL+FD C F G  +F RP FD SEN FSFL  GSC++ Q+
Sbjct: 462 DDIPNLDMK-MADDP-RYFSPLSFDPC-FGGLDDFTRPGFDISENPFSFLPSGSCSFGQQ 518

Query: 514 TG 515
            G
Sbjct: 519 NG 520

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score =  318 bits (814), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 213/326 (65%), Gaps = 14/326 (4%)

Query: 99  DWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQ 158
           DW P  ML+NL+F+E+KI +++D++  + GRR+            +QQL+ ADLT +IVQ
Sbjct: 54  DWSPDTMLDNLTFIEEKIRQVKDVIRSMAGRRAS----SSSAATPEQQLVNADLTCLIVQ 109

Query: 159 LISTAGSLLPSMKHT-LSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQS- 216
           LISTAGSLLPS+K++   + T                 AG S S    N   ++   +  
Sbjct: 110 LISTAGSLLPSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNETNREDEEEQM 169

Query: 217 -----NPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTH 271
                + +  V  +G   +  V     + +   +         YE+LQLE++EILAPHTH
Sbjct: 170 GSPDYDELFKVWTNGGAMDECVGAAGDEQDARENPAAAAEEEKYEVLQLEEDEILAPHTH 229

Query: 272 FCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLI---KRYSCPYAGCK 328
           FC ICGKGFKRDANLRMHMRGHGDEYK+ AALAKP      E       +RYSCP+AGCK
Sbjct: 230 FCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCK 289

Query: 329 RNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLC 388
           RN+ H  FQPLKTILCVKNHYKR+HC+K +VC RC  K+FSV+ADLKTHEKHCG+D+WLC
Sbjct: 290 RNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLC 349

Query: 389 SCGTTFSRKDKLFGHIALFQGHTPAI 414
           SCGT+FSRKDKLF H+ALFQGH PA+
Sbjct: 350 SCGTSFSRKDKLFAHVALFQGHAPAL 375

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 25/199 (12%)

Query: 251 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKES 310
           P    E++ L    ++A +   C +CGKGF+RD NL++H RGH   +K         K+ 
Sbjct: 46  PDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKL--------KQR 97

Query: 311 SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSV 370
           +S+ +  + Y CP   C     H   + L  +  +K H+ R H +K + C +C  K+++V
Sbjct: 98  TSKEVRKRVYVCPEKTCVH---HHSSRALGDLTGIKKHFCRKHGEKKWTCEKC-AKRYAV 153

Query: 371 IADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIAL---FQGHTPAIPLDETIKGLAGPS 427
            +D K H K CG  ++ C CGT FSR+D    H A        T  I     + GLA   
Sbjct: 154 QSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLA--- 210

Query: 428 DRREGNEATSKIGSTNFNF 446
                  A    GS N N+
Sbjct: 211 -------AAGAPGSVNLNY 222

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 84/153 (54%), Gaps = 9/153 (5%)

Query: 263 EEILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEY-KTPAALAKPHKESSSEPMLIKRY 320
           E+IL   THF C +C K F R  NL+MHM GHG +Y K P +L    K +    ML    
Sbjct: 136 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESL----KGTQPRAMLGIPC 191

Query: 321 SCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKH 380
            C   GC+ + DH + +PLK    ++ HYKR H  K + C  C  K  +V  D +THEK+
Sbjct: 192 YCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCG-KLLAVKGDWRTHEKN 250

Query: 381 CGKDKWLCSCGTTFSRKDKLFGHIALF-QGHTP 412
           CGK +W+C CG+ F  K  L  H+  F  GH P
Sbjct: 251 CGK-RWVCVCGSDFKHKRSLKDHVKAFGSGHGP 282

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 12/151 (7%)

Query: 256 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPM 315
           E++ L  + ++A +   C ICGKGF+RD NL++H RGH   +K         K+ +S+ +
Sbjct: 55  EVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKL--------KQRTSKEV 106

Query: 316 LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLK 375
             + Y CP   C     H   + L  +  +K H+ R H +K + C +C  K+++V +D K
Sbjct: 107 RKRVYVCPEKSCVH---HHPTRALGDLTGIKKHFCRKHGEKKWKCEKC-AKRYAVQSDWK 162

Query: 376 THEKHCGKDKWLCSCGTTFSRKDKLFGHIAL 406
            H K CG  ++ C CGT FSR+D    H A 
Sbjct: 163 AHSKTCGTREYRCDCGTIFSRRDSFITHRAF 193

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 23/192 (11%)

Query: 256 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPM 315
           +++ L    ++A +   C IC KGF+RD NL++H RGH   +K         + S  E +
Sbjct: 67  DVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK-------QRSKQEVI 119

Query: 316 LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLK 375
             K Y CP   C     H   + L  +  +K HY R H +K + C +C +KK++V +D K
Sbjct: 120 KKKVYICPIKTCVH---HDASRALGDLTGIKKHYSRKHGEKKWKCEKC-SKKYAVQSDWK 175

Query: 376 THEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEA 435
            H K CG  ++ C CGT FSRKD    H A           D   +  A  S     N  
Sbjct: 176 AHAKTCGTREYKCDCGTLFSRKDSFITHRAF---------CDALTEEGARMSSLSNNNPV 226

Query: 436 TSKIGSTNFNFG 447
              I +TN NFG
Sbjct: 227 ---ISTTNLNFG 235

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 272 FCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKP--HKESSSEPMLIKRYSCPYAGC 327
            CT+  CGK       L MH+      ++    +  P   K+ ++ P   K Y CP  GC
Sbjct: 81  LCTVRGCGKILPNSPALNMHLV---KSHRLQDGIVNPTIRKDLTTAP---KFYCCPIKGC 134

Query: 328 KRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWL 387
            R  D    +P      VK H+ + H +K + CS+C +  +    DLK HE+ CGK  + 
Sbjct: 135 PRGPD----RPFSQFSLVKQHFMKMHAEKKHKCSKC-SNSYGTEWDLKRHEEDCGK-TFQ 188

Query: 388 CSCGTTFSRKDKLFGHI 404
           C+CG  ++ +  L  HI
Sbjct: 189 CTCGCPYASRTALQSHI 205

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 22/171 (12%)

Query: 247 GEQLPPGSYEILQLEKEEILAPHTHFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALA 304
           GE + P   E+ +  +  IL      CT+  CGK       L MH+      ++    + 
Sbjct: 66  GELIQPSVSELSRAVRTNIL------CTVRGCGKILPNSPALNMHLV---KSHRLQDGIV 116

Query: 305 KP--HKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSR 362
            P   K+  + P   K Y CP  GC R  +    +P      VK H+ + H +K + CS+
Sbjct: 117 NPTIRKDLKTGP---KFYCCPIEGCPRGPE----RPFSQFSLVKQHFMKMHAEKKHKCSK 169

Query: 363 CNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPA 413
           C +  +    DLK H + CGK  + C+CG  ++ +  L  HI       PA
Sbjct: 170 C-SNSYGTEWDLKRHAEDCGK-TFRCTCGCPYASRTALQSHIYRTGHEIPA 218

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q3UTQ7|PRD10_MOUSE PR domain zinc finger protein 10 OS=Mus musculus GN=Prdm10 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYA--GCKRN 330
           C +C KGF   A+L  HM+ H D+ KT + +  P  ES     L+K +   +   GC   
Sbjct: 552 CDLCNKGFISSASLESHMKLHSDQ-KTYSCIFCP--ESFDRLDLLKDHVAIHVNDGCFTC 608

Query: 331 KDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHE-KHCGKDKWLCS 389
              KK  P    + VK H +  H +K Y C+ C+ K F     L+ H  +H  +  +LCS
Sbjct: 609 PTCKKRFP--DFIQVKKHVRSFHSEKIYQCTECD-KAFCRPDKLRLHMLRHSDRKDFLCS 665

Query: 390 -CGTTFSRKDKLFGHI 404
            CG  F RKDKL  H+
Sbjct: 666 TCGKQFKRKDKLREHM 681

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
225460694	527	PREDICTED: protein SENSITIVE TO PROTON R	0.990	0.984	0.738	0.0
302398677	527	C2H2L domain class transcription factor	0.986	0.981	0.698	0.0
449443883	512	PREDICTED: protein SENSITIVE TO PROTON R	0.952	0.974	0.690	0.0
224135895	509	predicted protein [Populus trichocarpa]	0.956	0.984	0.702	0.0
356576169	509	PREDICTED: protein SENSITIVE TO PROTON R	0.895	0.921	0.677	1e-179
224145204	506	predicted protein [Populus trichocarpa]	0.927	0.960	0.677	1e-179
351720762	414	C2-H2 zinc finger protein [Glycine max]	0.776	0.983	0.726	1e-171
297846438	505	zinc finger family protein [Arabidopsis	0.944	0.980	0.584	1e-165
146455139	499	C2-H2 zinc finger protein [Arabidopsis t	0.931	0.977	0.580	1e-164
15218606	499	protein SENSITIVE TO PROTON RHIZOTOXICIT	0.931	0.977	0.580	1e-163

>gi|225460694|ref|XP_002270196.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform 1 [Vitis vinifera] gi|359493099|ref|XP_003634509.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform 2 [Vitis vinifera] gi|359493101|ref|XP_003634510.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform 3 [Vitis vinifera] gi|147859485|emb|CAN81435.1| hypothetical protein VITISV_010700 [Vitis vinifera]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/532 (73%), Positives = 447/532 (84%), Gaps = 13/532 (2%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFN--SQQYQQKWEDPSILDYDIRIN 58
           MDLK+ L  +TW +SS + NE+ K   S    FT+F+   QQ+Q KWEDPS+LDY +RI 
Sbjct: 1   MDLKDRLSVDTWTQSSSSGNELPKDQQS----FTNFSLQQQQHQHKWEDPSVLDYSVRIE 56

Query: 59  PAFQEFNQPPQNQSSLPCDPTNQIKN----PFQMNENLQTNKMQDWDPKAMLNNLSFLEQ 114
           PAFQEFNQ     SSLPC+P +QIKN      QMNE L+ N++QDWDP+ ML+NLSFLEQ
Sbjct: 57  PAFQEFNQTSATSSSLPCNPNSQIKNLNREDCQMNEMLEPNRIQDWDPRVMLSNLSFLEQ 116

Query: 115 KIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTL 174
           KIH+LQDLVHLIVGRRSQ+LGR +ELVAQQQQL+TADLTSIIVQLI+TAG+LLPS+K+TL
Sbjct: 117 KIHQLQDLVHLIVGRRSQVLGRTNELVAQQQQLVTADLTSIIVQLITTAGTLLPSVKNTL 176

Query: 175 SAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVE 234
           S A+PS+GQLGQ GGV FP G G++     Q+S   KVS+QSN IDL G    +QN+A E
Sbjct: 177 STASPSVGQLGQLGGVLFPSGTGMNGGGVAQSSGGSKVSDQSNQIDLTGACVIEQNNATE 236

Query: 235 EHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHG 294
           EH+LKDEDDAD+GE LPPGSYEILQLEKEEILAPHTHFC ICGKGFKRDANLRMHMRGHG
Sbjct: 237 EHELKDEDDADEGENLPPGSYEILQLEKEEILAPHTHFCMICGKGFKRDANLRMHMRGHG 296

Query: 295 DEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC 354
           DEYKTPAALAKP+KESSSEP+LIKRYSCP+AGCKRNKDHKKFQPLKTILCVKNHYKRTHC
Sbjct: 297 DEYKTPAALAKPNKESSSEPVLIKRYSCPFAGCKRNKDHKKFQPLKTILCVKNHYKRTHC 356

Query: 355 DKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 414
           DKSY CSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAI
Sbjct: 357 DKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 416

Query: 415 PLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD--MDAKGNVDDPTNYF 472
           PLDET KG  GPSDR EGN A +K+GS  FNF S+  +G+GV D  MD K   D+PT +F
Sbjct: 417 PLDET-KGSVGPSDRGEGNGAANKVGSVGFNFSSNASSGSGVQDMMMDVKRGADEPTGFF 475

Query: 473 SPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNTLK 524
           SPL FD C+  GFHEFPRPPF+DSE++FSFL+PGSC+Y +KTGGE+S N L+
Sbjct: 476 SPLTFDPCSLVGFHEFPRPPFEDSESSFSFLVPGSCSYTRKTGGESSSNDLE 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398677|gb|ADL36633.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/530 (69%), Positives = 434/530 (81%), Gaps = 13/530 (2%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPA 60
           MD KE  + +TW   S   N+++  ISS++P FT+FNSQQ+Q++WE PS+LDY++R+ P+
Sbjct: 1   MDPKE-RQWDTWENPSTG-NDVTNTISSDHPSFTNFNSQQHQREWERPSVLDYEMRMEPS 58

Query: 61  FQEFNQPPQNQSSLPCDPTNQIKNPFQ----MNENLQTNKMQDWDPKAMLNNLSFLEQKI 116
           F +F+QP  +Q+S  C+  N  K P Q    M+E  Q NK+QDWD +  LNNL+FLEQKI
Sbjct: 59  FLKFHQPSDSQTSYTCNSKNDTKIPDQEGGKMHEVQQPNKIQDWDARMTLNNLTFLEQKI 118

Query: 117 HELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSA 176
           H+LQDLVH+IVGRR Q+LGRPDELVAQQQQLITADLTSII QLISTAGSLLPS+KHTLS 
Sbjct: 119 HQLQDLVHVIVGRRGQVLGRPDELVAQQQQLITADLTSIIAQLISTAGSLLPSVKHTLST 178

Query: 177 ATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEH 236
             PS GQ GQ GG   P  AG    +++Q +   K+++Q+N  DL+ N GT+    +EEH
Sbjct: 179 TLPSTGQFGQLGGSFIPSAAGNDAGVKMQINSGSKLADQANQTDLISNYGTEH---IEEH 235

Query: 237 DLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 296
           + KDE+DAD+GE LPPGSYEILQLEKEEILAPHTHFC ICGKGFKRDANLRMHMRGHGDE
Sbjct: 236 ETKDEEDADEGENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDE 295

Query: 297 YKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDK 356
           YKT AALAKP+KESSSEP LIKRYSCPYAGCKRNKD+KKFQPLKTILCVKNHYKRTHCDK
Sbjct: 296 YKTAAALAKPNKESSSEPTLIKRYSCPYAGCKRNKDYKKFQPLKTILCVKNHYKRTHCDK 355

Query: 357 SYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL 416
           SY CSRCNTKKFSVIADLKTHEKHCG DKWLCSCGTTFSRKDKLFGHI LFQGHTPAIPL
Sbjct: 356 SYTCSRCNTKKFSVIADLKTHEKHCGIDKWLCSCGTTFSRKDKLFGHITLFQGHTPAIPL 415

Query: 417 DETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD--MDAKGNVDDPTNYFSP 474
           DET KG  GP+D  EG+EA++++GS NF+  S+ P G G +   MD K +VDDPT+YFSP
Sbjct: 416 DET-KGTLGPADHGEGSEASNRVGSINFSVSSTAPGGGGAAQSLMDVKESVDDPTSYFSP 474

Query: 475 LNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKT-GGETSLNTL 523
           LNF+TCNFDGF EFPRPPF+D+E++FSFL+PGSCNY  KT GGE++ N L
Sbjct: 475 LNFETCNFDGFQEFPRPPFEDTESSFSFLMPGSCNYTHKTGGGESNFNNL 524

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443883|ref|XP_004139705.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Cucumis sativus] gi|449516603|ref|XP_004165336.1| PREDICTED: LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Cucumis sativus]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/507 (69%), Positives = 400/507 (78%), Gaps = 8/507 (1%)

Query: 23  SKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQI 82
           S  + + +  F + N QQ  QKW D SILDY   ++  FQEF +  ++++SL C+P  QI
Sbjct: 9   SSEVWTKSSSFPNGNVQQPPQKWPDTSILDY--AMDQPFQEFQEQTESKASLTCNPNQQI 66

Query: 83  ----KNPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPD 138
               K+  QMN  L  +K+QDWDP+AMLNNLSFLEQKIH+LQ+LVHLIVGRR Q+ GRPD
Sbjct: 67  EILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRGQVFGRPD 126

Query: 139 ELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGL 198
           ELV QQQQLITADLTSIIVQLISTAGSLLPS+KH LSAA P +GQL  F  V F  G G 
Sbjct: 127 ELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEPFDKVIFASGPGT 186

Query: 199 SDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEIL 258
           +  +Q Q+    K+      +D     G +QN  VEEH+ KDE+DAD+ E LPPGSYEIL
Sbjct: 187 NGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEHESKDEEDADEHENLPPGSYEIL 246

Query: 259 QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIK 318
           QLEKEEILAPHTHFC ICGKGFKRDANLRMHMRGHGDEYKT AALAKP+KE  SE MLIK
Sbjct: 247 QLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELGSETMLIK 306

Query: 319 RYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHE 378
           RYSCP+ GCKRNKDHKKFQPLKTILCVKNHYKRTHCDKS+ CS+CN+KKFSVIADLKTHE
Sbjct: 307 RYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHE 366

Query: 379 KHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSK 438
           KHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDE+ KG     DR E  E T+K
Sbjct: 367 KHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDES-KGATVSCDRGERYETTNK 425

Query: 439 IGSTNFNFGSSVPNGTGVSDM-DAKGNVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSE 497
           +GS NF+FGS    G+ V  + DAKG VDDP +YFSPLNFD+CNF GFHEFPRPPF++++
Sbjct: 426 LGSINFSFGSIASGGSSVETIADAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTD 485

Query: 498 NAFSFLIPGSCNYIQKTGGETSLNTLK 524
           NAFSFLIPGS NY QK+G E+S N L+
Sbjct: 486 NAFSFLIPGSGNYTQKSGAESSSNNLE 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135895|ref|XP_002327330.1| predicted protein [Populus trichocarpa] gi|222835700|gb|EEE74135.1| predicted protein [Populus trichocarpa]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/508 (70%), Positives = 423/508 (83%), Gaps = 7/508 (1%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPA 60
           M+ K+    + WA  S + N + ++++  NP FT+FN QQ +QKW+D SILDY IRI P 
Sbjct: 1   MEPKDRPSLDAWANPSSSSNGLPRKMALENPSFTNFNLQQQEQKWDDTSILDYGIRIEPP 60

Query: 61  FQEFNQPPQNQSSLPCDPTNQIK----NPFQMNENLQTNKMQDWDPKAMLNNLSFLEQKI 116
           F+EFNQ  +++  L  +  NQ K       Q NE LQT+K+QDWDP++MLNNLSFLEQKI
Sbjct: 61  FREFNQASESEYLLSSNCNNQPKVLDQEDGQNNEALQTSKLQDWDPRSMLNNLSFLEQKI 120

Query: 117 HELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSA 176
           H LQDLVHLIVGR+ Q LG  D+LV QQQQLITADLTSIIVQLISTAGSLLPS+KHT S 
Sbjct: 121 HHLQDLVHLIVGRKGQALGGQDQLVTQQQQLITADLTSIIVQLISTAGSLLPSVKHTFST 180

Query: 177 ATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEH 236
            TP+ GQLGQ GG+ FPP AG++   Q Q+    KVS+Q N +D+ GN GT+ NH++EEH
Sbjct: 181 GTPN-GQLGQLGGILFPPLAGMNCVPQPQHGSGSKVSDQCNQMDVTGNCGTEPNHSIEEH 239

Query: 237 DLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 296
           ++K+E+DAD+GE LPPGSY+ILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE
Sbjct: 240 EMKEEEDADEGENLPPGSYDILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 299

Query: 297 YKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDK 356
           YKTPAALAKP+KE SSEP++IKRYSCP+AGCKRNKDHKKFQPLKTILCVKNHYKRTHCDK
Sbjct: 300 YKTPAALAKPNKEPSSEPVIIKRYSCPFAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDK 359

Query: 357 SYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL 416
           SY+CSRCNTKKFSV+ADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL
Sbjct: 360 SYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL 419

Query: 417 DETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD-MDAKGNVDDPTNYFSPL 475
           +ET KG     D+ +GNEA++K+G+TNF+ GS+  +G+G  + ++ K + DDP +YFSPL
Sbjct: 420 EET-KGPYVSCDKVDGNEASNKVGNTNFSLGSNAGSGSGAQNVIEVKEDADDPASYFSPL 478

Query: 476 NFDTCNFDGFHEFPRPPFDDSENAFSFL 503
           +FDTCNF GFHEFPRPPFDDSE++FSFL
Sbjct: 479 SFDTCNFGGFHEFPRPPFDDSESSFSFL 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576169|ref|XP_003556206.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Glycine max]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/478 (67%), Positives = 373/478 (78%), Gaps = 9/478 (1%)

Query: 53  YDIRINPAFQEFNQP-PQNQSSLPCDPTNQIKNPFQMN----ENLQTNKMQDWDPKAMLN 107
           Y +RI   F+EF QP P  QS LP +    I  P Q N    ++  T+K+QDW+P AMLN
Sbjct: 34  YGVRIESPFEEFIQPSPPTQSVLPGESNTDIDIPDQENCPLSDSSHTSKLQDWNPSAMLN 93

Query: 108 NLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLL 167
           NLSFLE KIH+L+DLVH+IV ++ Q  G+P ELV Q+QQLITADLTSIIVQLISTAGSLL
Sbjct: 94  NLSFLEVKIHQLRDLVHVIVSKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLL 153

Query: 168 PSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGT 227
           PS++HTL+ A P +GQL Q  G+  P  +  S  I+ QN+   K+ +QS   DL      
Sbjct: 154 PSVRHTLTNANPLVGQLDQLHGINLPFESEPSSGIRPQNNSGNKLFDQSIQNDLPNKLEM 213

Query: 228 QQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLR 287
           +QN+ +EEH+ KDE+D D+GE LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLR
Sbjct: 214 EQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLR 273

Query: 288 MHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKN 347
           MHMRGHGD+YKTPAALAKPHKES SEP LIKRYSCPY GCKRNKDHKKFQPLKTILCVKN
Sbjct: 274 MHMRGHGDKYKTPAALAKPHKESGSEPKLIKRYSCPYNGCKRNKDHKKFQPLKTILCVKN 333

Query: 348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF 407
           HYKRTHCDKSY CSRCNTKKFSV+ADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF
Sbjct: 334 HYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF 393

Query: 408 QGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD-MDAKGNVD 466
           QGHTPAIPLDET KG+A P D  +  E+ +K+ S NF FGS+  +   V + MD KGN D
Sbjct: 394 QGHTPAIPLDET-KGMAEPPD-IQNRESNNKVESINFCFGSNSSSENVVQNMMDMKGNND 451

Query: 467 DPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQK-TGGETSLNTL 523
           DP NYFS LNF+ CNF  F+EF +PPF+DS+  FSF + GS NY  K  GGE+S + L
Sbjct: 452 DPMNYFSSLNFEGCNFGAFNEFSQPPFEDSDGCFSFPMSGSFNYAPKFGGGESSSDNL 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145204|ref|XP_002325563.1| predicted protein [Populus trichocarpa] gi|222862438|gb|EEE99944.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 342/505 (67%), Positives = 402/505 (79%), Gaps = 19/505 (3%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFN---SQQYQQKWEDPSILDYDIRI 57
           MDL + L  + WA +S + NE+ +R+SS NP FTDFN    Q+ QQKWED  I       
Sbjct: 1   MDLTDRLSVDVWADTSSSGNELPRRMSSENPSFTDFNLQQQQKQQQKWEDNII------- 53

Query: 58  NPAFQEFNQPPQNQSSLPCDPTNQIK-----NPFQMNENLQTNKMQDWDPKAMLNNLSFL 112
           +P F  FNQ  ++   L  +  NQ K        +  E L+TNK+QDWDP+AML+NLSFL
Sbjct: 54  SPPFGGFNQASESGYLLLSNRNNQTKILDHQEDGKSIETLETNKVQDWDPRAMLSNLSFL 113

Query: 113 EQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQ-LITADLTSIIVQLISTAGSLLPSMK 171
           EQKIH LQDLVHL VGR+ Q LG  D+LV QQQQ LITADLTSIIVQLISTAGSLLPS+K
Sbjct: 114 EQKIHHLQDLVHLFVGRKGQGLGGQDQLVTQQQQFLITADLTSIIVQLISTAGSLLPSVK 173

Query: 172 HTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNH 231
           HTLS  TP+       GG+ FPP AG++ S + Q+   ++VS+QS+ +D  GN GT QNH
Sbjct: 174 HTLSTDTPNGHLGQL-GGLLFPPVAGMNCSPKPQHGSGRRVSDQSDKMDGTGNCGTDQNH 232

Query: 232 AVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMR 291
            +EEH+ K+E+DAD+G+ LPPGSY+ILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMR
Sbjct: 233 FIEEHETKEEEDADEGDYLPPGSYDILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMR 292

Query: 292 GHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKR 351
           GHGDEYKTPAALAKP+KESSS+P++IKRYSCP++GCKRNKDHKKFQPLK+ILCVKNHYKR
Sbjct: 293 GHGDEYKTPAALAKPNKESSSDPVVIKRYSCPFSGCKRNKDHKKFQPLKSILCVKNHYKR 352

Query: 352 THCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHT 411
           THCDKSY CSRCNTKKFSV ADLKTHEKHCGKD+WLCSCGTTFSRKDKLFGHIALFQGHT
Sbjct: 353 THCDKSYTCSRCNTKKFSVTADLKTHEKHCGKDRWLCSCGTTFSRKDKLFGHIALFQGHT 412

Query: 412 PAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD-MDAKGNVDDPTN 470
           PAIPL+ET KG A  SD+ +GNEA++K+G+ NF+FGS    G+G  + M+   + DDP++
Sbjct: 413 PAIPLEET-KGPAVSSDKVDGNEASNKVGNINFSFGSHAATGSGAKNVMEVNDDADDPSS 471

Query: 471 YFSPLNFDTCNFDGFHEFPRPPFDD 495
            FSPLNFDTCNF GFHEFPRPPFDD
Sbjct: 472 CFSPLNFDTCNFGGFHEFPRPPFDD 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720762|ref|NP_001237699.1| C2-H2 zinc finger protein [Glycine max] gi|161087182|gb|ABX56674.1| C2-H2 zinc finger protein [Glycine max] gi|168472663|gb|ACA24108.1| C2-H2 zinc finger protein [Glycine max]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 298/410 (72%), Positives = 339/410 (82%), Gaps = 3/410 (0%)

Query: 105 MLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAG 164
           MLNNLSFLE+KIH+LQDLVH+IV ++ Q  G+P ELV Q+QQLITADLTSIIVQLISTAG
Sbjct: 1   MLNNLSFLEEKIHQLQDLVHVIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAG 60

Query: 165 SLLPSMKHTLSAATPSMGQLGQFGGVPFPPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGN 224
           SLLPS++HTL+   P +GQL Q  G+  P G+  S  I+ QN+   K+ +QS   DL   
Sbjct: 61  SLLPSVRHTLTNTNPLVGQLDQLHGINLPFGSEPSSGIRPQNNSGNKLFDQSTQNDLPNK 120

Query: 225 SGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDA 284
              +QN+ +EEH+ KDE+DAD+GE LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDA
Sbjct: 121 LEMEQNYNMEEHEPKDEEDADEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDA 180

Query: 285 NLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILC 344
           NLRMHMRGHGD+YKTPAALAKPHKE+ SEP LIKRYSCPYAGCKRNKDHKKFQPLKTILC
Sbjct: 181 NLRMHMRGHGDKYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILC 240

Query: 345 VKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHI 404
           VKNHYKRTHCDKSY CSRCNTKKFSV+ADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHI
Sbjct: 241 VKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHI 300

Query: 405 ALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD-MDAKG 463
           ALFQGHTPAIPLDET KG+A P D  +  E+ +K+ S NF FGS+  +   V + MD KG
Sbjct: 301 ALFQGHTPAIPLDET-KGVAEPPD-IQNRESNNKVESINFCFGSNPSSENVVQNIMDMKG 358

Query: 464 NVDDPTNYFSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQK 513
           N+DDP NYFS LNF+ CNF  F+EF +PPF+DSE +FSF + GS NY  K
Sbjct: 359 NIDDPMNYFSSLNFEGCNFGAFNEFSQPPFEDSEASFSFPMSGSYNYAPK 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846438|ref|XP_002891100.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297336942|gb|EFH67359.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 310/530 (58%), Positives = 369/530 (69%), Gaps = 35/530 (6%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPA 60
           M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P+
Sbjct: 1   METEDDLCNNNWGSSSSKSREPGLS-DGGNQTFAGFASQQ---KWEDASILDYEMGVEPS 56

Query: 61  FQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHEL 119
            Q F++               +K   Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+L
Sbjct: 57  LQVFDE---------------MKASGQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQL 101

Query: 120 QDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAA-T 178
           QDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLISTAGSLLPS+KH +S A  
Sbjct: 102 QDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPG 161

Query: 179 PSMGQLGQFGGVPFPPGAG-LSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHD 237
           P  GQ G     P+   A  ++   Q  N+C  +  +   P+ +      +++H VEEH+
Sbjct: 162 PYTGQPGS-ALFPYAREANNVASQSQNNNNCGAQEFDLPKPVVV----DERESHVVEEHE 216

Query: 238 LKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEY 297
           +KDEDDA++GE L PGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEY
Sbjct: 217 MKDEDDAEEGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEY 276

Query: 298 KTPAALAKPHKES--SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCD 355
           KT AALAKP+KES   SEPMLIKRYSCP+ GCKRNK+HKKFQPLKTILCVKNHYKRTHCD
Sbjct: 277 KTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCD 336

Query: 356 KSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIP 415
           KS+ CSRC+TKKFSVIADLKTHEKHCGK+KWLCSCGTTFSRKDKLFGHIALFQGHTPAIP
Sbjct: 337 KSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIP 396

Query: 416 LDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSD---MDAKGNVDDPTNYF 472
           L+ET    +  + R   +   +  G   FN GS+       +    MD K + D+    F
Sbjct: 397 LEETKPSASTSTQRGSSDGGNNNQGMVGFNLGSASNANQETAQPGMMDGKISFDES---F 453

Query: 473 SPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNT 522
           SP+NFDTCNF GFHEFPR  FDDSE++F  LI  +C +  +  GE+  +T
Sbjct: 454 SPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIANACGFSPRNVGESVSDT 503

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146455139|dbj|BAF62149.1| C2-H2 zinc finger protein [Arabidopsis thaliana]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/531 (58%), Positives = 358/531 (67%), Gaps = 43/531 (8%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPA 60
           M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P 
Sbjct: 1   METEDDLCNNNWGSSSSKSREPGSS-DGGNSTFAGFTSQQ---KWEDASILDYEMGVEPG 56

Query: 61  FQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHEL 119
            QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+L
Sbjct: 57  LQE---------------------NIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQL 95

Query: 120 QDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATP 179
           QDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLISTAGSLLPS+KH +S A  
Sbjct: 96  QDLVHLLVGRGGQVQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPG 155

Query: 180 SMGQLGQFGGVPFP---PGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEH 236
                GQ G   FP       ++   Q  N+C  +  +   P+ LV     ++ H VEEH
Sbjct: 156 PF--TGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPV-LVDE---REGHVVEEH 209

Query: 237 DLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 296
           ++KDEDD ++GE LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE
Sbjct: 210 EMKDEDDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 269

Query: 297 YKTPAALAKPHKES--SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC 354
           YKT AALAKP+KES   SEPMLIKRYSCP+ GCKRNK+HKKFQPLKTILCVKNHYKRTHC
Sbjct: 270 YKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHC 329

Query: 355 DKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 414
           DKS+ CSRC+TKKFSVIADLKTHEKHCGK+KWLCSCGTTFSRKDKLFGHIALFQGHTPAI
Sbjct: 330 DKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 389

Query: 415 PLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNY--- 471
           PL+ET    +  + R       +  G   FN GS+        +    G  D    +   
Sbjct: 390 PLEETKPSASTSTQRGSSEGGNNNQGMVGFNLGSA---SNANQETTQPGMTDGRICFEES 446

Query: 472 FSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNT 522
           FSP+NFDTCNF GFHEFPR  FDDSE++F  LI  +C +  +  GE+  +T
Sbjct: 447 FSPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIANACGFSPRNVGESVSDT 497

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218606|ref|NP_174697.1| protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Arabidopsis thaliana] gi|30693052|ref|NP_849746.1| protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Arabidopsis thaliana] gi|75333532|sp|Q9C8N5.1|STOP1_ARATH RecName: Full=Protein SENSITIVE TO PROTON RHIZOTOXICITY 1; AltName: Full=Zinc finger protein STOP1 gi|12323857|gb|AAG51898.1|AC023913_6 zinc finger protein, putative; 58191-56692 [Arabidopsis thaliana] gi|110742520|dbj|BAE99177.1| putative zinc finger protein [Arabidopsis thaliana] gi|146455137|dbj|BAF62148.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455141|dbj|BAF62150.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455143|dbj|BAF62151.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455145|dbj|BAF62152.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455147|dbj|BAF62153.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455149|dbj|BAF62154.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455151|dbj|BAF62155.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455153|dbj|BAF62156.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455155|dbj|BAF62157.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|146455157|dbj|BAF62158.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|172087950|dbj|BAG16782.1| C2-H2 zinc finger protein [Arabidopsis thaliana] gi|332193582|gb|AEE31703.1| protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Arabidopsis thaliana] gi|332193583|gb|AEE31704.1| protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Arabidopsis thaliana]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/531 (58%), Positives = 358/531 (67%), Gaps = 43/531 (8%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPA 60
           M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P 
Sbjct: 1   METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPG 56

Query: 61  FQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHEL 119
            QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+L
Sbjct: 57  LQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQL 95

Query: 120 QDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATP 179
           QDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLISTAGSLLPS+KH +S A  
Sbjct: 96  QDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPG 155

Query: 180 SMGQLGQFGGVPFP---PGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEH 236
                GQ G   FP       ++   Q  N+C  +  +   P+ LV     ++ H VEEH
Sbjct: 156 PF--TGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPV-LVDE---REGHVVEEH 209

Query: 237 DLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 296
           ++KDEDD ++GE LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE
Sbjct: 210 EMKDEDDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE 269

Query: 297 YKTPAALAKPHKES--SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC 354
           YKT AALAKP+KES   SEPMLIKRYSCP+ GCKRNK+HKKFQPLKTILCVKNHYKRTHC
Sbjct: 270 YKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHC 329

Query: 355 DKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 414
           DKS+ CSRC+TKKFSVIADLKTHEKHCGK+KWLCSCGTTFSRKDKLFGHIALFQGHTPAI
Sbjct: 330 DKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAI 389

Query: 415 PLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNY--- 471
           PL+ET    +  + R       +  G   FN GS+        +    G  D    +   
Sbjct: 390 PLEETKPSASTSTQRGSSEGGNNNQGMVGFNLGSA---SNANQETTQPGMTDGRICFEES 446

Query: 472 FSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNT 522
           FSP+NFDTCNF GFHEFPR  FDDSE++F  LI  +C +  +  GE+  +T
Sbjct: 447 FSPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIANACGFSPRNVGESVSDT 497

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	524
TAIR|locus:2036303	499	STOP1 "AT1G34370" [Arabidopsis	0.824	0.865	0.622	4.6e-150
UNIPROTKB|Q943I6	522	LOC_Os01g65080 "Zinc finger pr	0.494	0.496	0.719	9.9e-131
UNIPROTKB|Q2QX40	465	STAR3 "Zinc finger protein STA	0.622	0.701	0.516	2.8e-89
TAIR|locus:2172701	373	AT5G22890 [Arabidopsis thalian	0.307	0.431	0.619	1.1e-64
TAIR|locus:2008386	303	TT1 "transparent testa 1" [Ara	0.272	0.471	0.428	3e-28
TAIR|locus:2205334	302	DOT5 "DEFECTIVELY ORGANIZED TR	0.332	0.576	0.389	1.3e-26
TAIR|locus:2091931	412	WIP4 "AT3G20880" [Arabidopsis	0.307	0.390	0.395	1.7e-26
TAIR|locus:2008281	337	WIP5 "AT1G51220" [Arabidopsis	0.272	0.424	0.421	2.9e-25
TAIR|locus:2200003	337	WIP3 "AT1G08290" [Arabidopsis	0.267	0.415	0.403	1e-24
TAIR|locus:2076641	383	NTT "AT3G57670" [Arabidopsis t	0.293	0.402	0.387	9.5e-24

TAIR|locus:2036303 STOP1 "AT1G34370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 4.6e-150, Sum P(2) = 4.6e-150
 Identities = 280/450 (62%), Positives = 323/450 (71%)

Query:    82 IKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDEL 140
             ++   Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+LQDLVHL+VGR  Q+ GR DEL
Sbjct:    57 LQESIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDEL 116

Query:   141 VAQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAAT-PSMGQLGQFGGVPFPPGAG-L 198
              AQQQQLIT DLTSII+QLISTAGSLLPS+KH +S A  P  GQ G     P+   A  +
Sbjct:   117 AAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPGPFTGQPGS-AVFPYVREANNV 175

Query:   199 SDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVXXXXXXXXXXXXXXXQLPPGSYEIL 258
             +   Q  N+C  +  +   P+ LV     ++ H V                LPPGSYEIL
Sbjct:   176 ASQSQNNNNCGAREFDLPKPV-LVDE---REGHVVEEHEMKDEDDVEEGENLPPGSYEIL 231

Query:   259 QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKES--SSEPML 316
             QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKT AALAKP+KES   SEPML
Sbjct:   232 QLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPML 291

Query:   317 IKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKT 376
             IKRYSCP+ GCKRNK+HKKFQPLKTILCVKNHYKRTHCDKS+ CSRC+TKKFSVIADLKT
Sbjct:   292 IKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKT 351

Query:   377 HEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEA- 435
             HEKHCGK+KWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL+ET K  A  S +R  +E  
Sbjct:   352 HEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEET-KPSASTSTQRGSSEGG 410

Query:   436 TSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNY---FSPLNFDTCNFDGFHEFPRPP 492
              +  G   FN GS+  N     +    G  D    +   FSP+NFDTCNF GFHEFPR  
Sbjct:   411 NNNQGMVGFNLGSA-SNAN--QETTQPGMTDGRICFEESFSPMNFDTCNFGGFHEFPRLM 467

Query:   493 FDDSENAFSFLIPGSCNYIQKTGGETSLNT 522
             FDDSE++F  LI  +C +  +  GE+  +T
Sbjct:   468 FDDSESSFQMLIANACGFSPRNVGESVSDT 497

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0010447 "response to acidity" evidence=IMP

UNIPROTKB|Q943I6 LOC_Os01g65080 "Zinc finger protein STOP1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1033 (368.7 bits), Expect = 9.9e-131, Sum P(2) = 9.9e-131
 Identities = 192/267 (71%), Positives = 219/267 (82%)

Query:   250 LPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKE 309
             LPPGSY +LQLEKEEILAPHTHFC ICGKGFKRDANLRMHMRGHGDEYKT AALAKP K+
Sbjct:   261 LPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKD 320

Query:   310 SSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFS 369
             SS E   + RYSCPY GCKRNK+HKKFQPLKTILCVKNHYKR+HCDKSY CSRCNTKKFS
Sbjct:   321 SSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFS 380

Query:   370 VIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDR 429
             VIADLKTHEKHCG+DKWLCSCGTTFSRKDKLFGH+ALFQGHTPA+P+D+ IK + G S++
Sbjct:   381 VIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDD-IK-VTGASEQ 438

Query:   430 REGNEA-TSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNYFSPLNFDTCNFDGFHEF 488
              +G+EA  + +GS  +NF  S  +   + ++D K   DDP  YFSPL+FD C F G  +F
Sbjct:   439 PQGSEAMNTMVGSAGYNFPGS--SSDDIPNLDMK-MADDP-RYFSPLSFDPC-FGGLDDF 493

Query:   489 PRPPFDDSENAFSFLIPGSCNYIQKTG 515
              RP FD SEN FSFL  GSC++ Q+ G
Sbjct:   494 TRPGFDISENPFSFLPSGSCSFGQQNG 520

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q2QX40 STAR3 "Zinc finger protein STAR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 176/341 (51%), Positives = 221/341 (64%)

Query:    85 PFQMNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQ 144
             P Q+  ++    M DW P  ML+NL+F+E+KI +++D++  + GRR+            +
Sbjct:    41 PQQLLPSVSIQHM-DWSPDTMLDNLTFIEEKIRQVKDVIRSMAGRRAS----SSSAATPE 95

Query:   145 QQLITADLTSIIVQLISTAGSLLPSMKHT--LSAATPS-MGQLGQFGGVPFPPGAGLSDS 201
             QQL+ ADLT +IVQLISTAGSLLPS+K++  LS  TP      G    V    G   S +
Sbjct:    96 QQLVNADLTCLIVQLISTAGSLLPSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSA 155

Query:   202 IQVQNSCAKKVSNQSNP----IDLVGNSGTQQNHAVXXXXXXXXXXXXXXXQLPPGSYEI 257
                + +   +     +P    +  V  +G   +  V                     YE+
Sbjct:   156 RNNETNREDEEEQMGSPDYDELFKVWTNGGAMDECVGAAGDEQDARENPAAAAEEEKYEV 215

Query:   258 LQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSE---P 314
             LQLE++EILAPHTHFC ICGKGFKRDANLRMHMRGHGDEYK+ AALAKP      E   P
Sbjct:   216 LQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPP 275

Query:   315 MLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADL 374
                +RYSCP+AGCKRN+ H  FQPLKTILCVKNHYKR+HC+K +VC RC  K+FSV+ADL
Sbjct:   276 QPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADL 335

Query:   375 KTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIP 415
             KTHEKHCG+D+WLCSCGT+FSRKDKLF H+ALFQGH PA+P
Sbjct:   336 KTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPALP 376

GO:0005634 "nucleus" evidence=IDA

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2172701 AT5G22890 [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 101/163 (61%), Positives = 126/163 (77%)

Query:   253 GSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSS 312
             GSY+IL+L+  ++LA +TH+C ICGKGFKRDANLRMHMR HGDEYKT  AL  P  +   
Sbjct:   199 GSYDILELDVADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKK 258

Query:   313 EPMLIKR--YSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSV 370
                 +K+  YSCP  GC+ N+ H+KFQPLK+++C KNHYKR+HC K Y+C RC+ K FSV
Sbjct:   259 GGYSLKKHYYSCPQHGCRWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSV 318

Query:   371 IADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPA 413
             ++DL+THEKHCG  KW+CSCGT FSRKDKL  H++LF GH PA
Sbjct:   319 LSDLRTHEKHCGDIKWVCSCGTKFSRKDKLMSHVSLFLGHVPA 361

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2008386 TT1 "transparent testa 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
 Identities = 66/154 (42%), Positives = 86/154 (55%)

Query:   263 EEILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEY-KTPAALAKPHKESSSEPML-IKR 319
             E+IL   THF C +C K F R  NL+MHM GHG +Y K P +L    K +    ML I  
Sbjct:   136 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESL----KGTQPRAMLGIPC 191

Query:   320 YSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK 379
             Y C   GC+ + DH + +PLK    ++ HYKR H  K + C  C  K  +V  D +THEK
Sbjct:   192 YCC-VEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCG-KLLAVKGDWRTHEK 249

Query:   380 HCGKDKWLCSCGTTFSRKDKLFGHIALF-QGHTP 412
             +CGK +W+C CG+ F  K  L  H+  F  GH P
Sbjct:   250 NCGK-RWVCVCGSDFKHKRSLKDHVKAFGSGHGP 282

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009813 "flavonoid biosynthetic process" evidence=IMP

TAIR|locus:2205334 DOT5 "DEFECTIVELY ORGANIZED TRIBUTARIES 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 72/185 (38%), Positives = 99/185 (53%)

Query:   253 GSYEILQLEKEEILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEY-KTPAALAKPHKES 310
             G Y I  L   +IL   T F C++C K F R  N++MHM GHG +Y K P +L     +S
Sbjct:    84 GQYWIPSLS--QILVGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGT--KS 139

Query:   311 SSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSV 370
             SS  + +  Y C   GCK N DH + +PLK    ++ HYKR H  K + C +   K F+V
Sbjct:   140 SSSILRLPCYCCA-EGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAV 198

Query:   371 IADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF-QGHTPAIPLDETIKGLAGPSDR 429
               D +THEK+CGK  W C CG+ F  K  L  H+  F  GH  A  + + + G+ G +D 
Sbjct:   199 RGDWRTHEKNCGK-LWFCVCGSDFKHKRSLKDHVRAFGDGHA-AHTVSDRVVGI-GDADE 255

Query:   430 REGNE 434
              +  E
Sbjct:   256 DDEEE 260

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2091931 WIP4 "AT3G20880" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 68/172 (39%), Positives = 93/172 (54%)

Query:   264 EILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEY-KTPAALAKPHKESSSEPML-IKRY 320
             +IL   T F C +C K F R  N++MHM GHG +Y K P +L    + +    ML +  Y
Sbjct:   248 QILMGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESL----RGTQPTAMLKLPCY 303

Query:   321 SCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKH 380
              C   GCK N DH + +PLK    ++ HYKR H  + + C RC  K F+V  D +THEK+
Sbjct:   304 CCA-PGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCG-KAFAVKGDWRTHEKN 361

Query:   381 CGKDKWLCSCGTTFSRKDKLFGHIALF-QGHTPAIPLDETIKGLAGPSDRRE 431
             CGK  W CSCG+ F  K  L  H+  F  GH P   +D   +  A   +++E
Sbjct:   362 CGK-LWYCSCGSDFKHKRSLKDHVKAFGNGHVPCCGIDHEEEEAASDVEQQE 412

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2008281 WIP5 "AT1G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 64/152 (42%), Positives = 82/152 (53%)

Query:   264 EILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEY-KTPAALAKPHKESSSEPMLIKRYS 321
             +IL   T F C +C K F R  N++MHM GHG +Y K P +L    + +    ML     
Sbjct:   170 QILIGPTQFTCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESL----RGTQPTGMLRLPCF 225

Query:   322 CPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHC 381
             C   GCK N DH + +PLK    ++ HYKR H  K + C  C  K F+V  D +THEK+C
Sbjct:   226 CCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCG-KAFAVKGDWRTHEKNC 284

Query:   382 GKDKWLCSCGTTFSRKDKLFGHIALF-QGHTP 412
             GK  W CSCG+ F  K  L  H+  F  GH P
Sbjct:   285 GK-LWYCSCGSDFKHKRSLKDHVKAFGNGHVP 315

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2200003 WIP3 "AT1G08290" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 61/151 (40%), Positives = 82/151 (54%)

Query:   266 LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYA 325
             + P    C+IC K F R  N++MHM GHG E++  A   K     + +P  I R  C Y 
Sbjct:   175 VGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGADSLK----GTIQPAAILRLPC-YC 229

Query:   326 ---GCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCG 382
                GCK N +H + +PLK    ++ HYKR H  K + C +C  K  +V  D +THEK+CG
Sbjct:   230 CAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCG-KALAVKGDWRTHEKNCG 288

Query:   383 KDKWLCSCGTTFSRKDKLFGHIALF-QGHTP 412
             K  W C+CG+ F  K  L  HI  F  GH+P
Sbjct:   289 K-LWYCTCGSDFKHKRSLKDHIRSFGSGHSP 318

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2076641 NTT "AT3G57670" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 9.5e-24, P = 9.5e-24
 Identities = 64/165 (38%), Positives = 88/165 (53%)

Query:   249 QLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEY-KTPAALAKPH 307
             +L  G Y I     + ++ P    C +C K F R  N++MHM GHG +Y K P +L    
Sbjct:   196 RLNKGQYWI-PTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESL---- 250

Query:   308 KESSSEPML-IKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTK 366
             + +    ML +  Y C   GC+ N DH + +PLK    ++ HYKR H  K ++C +C  K
Sbjct:   251 RGTQPTGMLRLPCYCCA-PGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-K 308

Query:   367 KFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALF-QGH 410
              F+V  D +THEK+CGK  W C CG+ F  K  L  HI  F  GH
Sbjct:   309 AFAVRGDWRTHEKNCGK-LWYCICGSDFKHKRSLKDHIKAFGNGH 352

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0010500 "transmitting tissue development" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8N5	STOP1_ARATH	No assigned EC number	0.5800	0.9312	0.9779	yes	no
Q943I6	STOP1_ORYSJ	No assigned EC number	0.5601	0.8454	0.8486	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031791001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_59, whole genome shotgun sequence); (527 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	524
pfam00096	22	pfam00096, zf-C2H2, Zinc finger, C2H2 type	0.003

>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 273 CTICGKGFKRDANLRMHMRGH 293
           C  CGK F R +NL+ H+R H
Sbjct: 2   CPDCGKSFSRKSNLKRHLRTH 22

The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Length = 22

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	524
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.92
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.91
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.83
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.76
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.7
KOG3608	467	consensus Zn finger proteins [General function pre	99.7
KOG3576	267	consensus Ovo and related transcription factors [T	99.59
KOG3576	267	consensus Ovo and related transcription factors [T	99.57
KOG3608	467	consensus Zn finger proteins [General function pre	99.51
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.38
PLN03086	567	PRLI-interacting factor K; Provisional	99.02
PLN03086	567	PRLI-interacting factor K; Provisional	98.98
PHA00733	128	hypothetical protein	98.85
PHA00733	128	hypothetical protein	98.82
PHA02768	55	hypothetical protein; Provisional	98.71
PHA02768	55	hypothetical protein; Provisional	98.58
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.33
KOG3993	500	consensus Transcription factor (contains Zn finger	98.3
PHA00616	44	hypothetical protein	97.97
PHA00616	44	hypothetical protein	97.9
PHA00732	79	hypothetical protein	97.9
KOG3993	500	consensus Transcription factor (contains Zn finger	97.89
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.76
PHA00732	79	hypothetical protein	97.7
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.56
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.56
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.48
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.4
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.07
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.88
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.77
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.72
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.55
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.51
COG5048	467	FOG: Zn-finger [General function prediction only]	96.38
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.37
smart00355	26	ZnF_C2H2 zinc finger.	96.24
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.19
PRK04860	160	hypothetical protein; Provisional	96.13
KOG1146	1406	consensus Homeobox protein [General function predi	96.1
KOG1146	1406	consensus Homeobox protein [General function predi	95.82
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.79
smart00355	26	ZnF_C2H2 zinc finger.	95.79
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.43
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.03
COG5048	467	FOG: Zn-finger [General function prediction only]	94.68
PRK04860	160	hypothetical protein; Provisional	94.61
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.05
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.77
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.55
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.22
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	91.91
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.71
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	90.49
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.06
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	88.77
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.6
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	87.1
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	85.47
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	84.29
KOG2893	341	consensus Zn finger protein [General function pred	83.73
COG5236	493	Uncharacterized conserved protein, contains RING Z	83.72
KOG2893	341	consensus Zn finger protein [General function pred	81.99
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	80.34
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.1

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.92  E-value=1.1e-26  Score=225.42  Aligned_cols=137  Identities=23%  Similarity=0.395  Sum_probs=125.1

Q ss_pred             CCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccc
Q 009831          267 APHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVK  346 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~  346 (524)
                      ..-.|+|+.|||.+.+.++|.+|.++|...                  ...+.+.|++||          +.|...-.|+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~------------------~s~ka~~C~~C~----------K~YvSmpALk  178 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSL------------------DSKKAFSCKYCG----------KVYVSMPALK  178 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccc------------------cccccccCCCCC----------ceeeehHHHh
Confidence            345699999999999999999999999653                  112779999999          9999999999


Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLA  424 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~  424 (524)
                      .|+++|.  -+++|.+|| |.|.+..-|+.|+| |||||||.|. |+|+|..+++|+.||.+|.+   .|.|+|..|+|.
T Consensus       179 MHirTH~--l~c~C~iCG-KaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~---~K~~qC~~C~Ks  252 (279)
T KOG2462|consen  179 MHIRTHT--LPCECGICG-KAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSD---VKKHQCPRCGKS  252 (279)
T ss_pred             hHhhccC--CCccccccc-ccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcC---CccccCcchhhH
Confidence            9999997  689999999 99999999999999 9999999999 99999999999999999999   568899999999


Q ss_pred             CCCCccccccccc
Q 009831          425 GPSDRREGNEATS  437 (524)
Q Consensus       425 f~~~~~l~~H~~~  437 (524)
                      |+..+.|++|..+
T Consensus       253 Fsl~SyLnKH~ES  265 (279)
T KOG2462|consen  253 FALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999999754

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.91  E-value=4.3e-25  Score=214.23  Aligned_cols=135  Identities=23%  Similarity=0.438  Sum_probs=123.3

Q ss_pred             CCCCCCcccCCCCCCCChhhhhhhhhhccC-CcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCc
Q 009831          238 LKDEDDADDGEQLPPGSYEILQLEKEEILA-PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPML  316 (524)
Q Consensus       238 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~  316 (524)
                      .....|.+|++.....+.+..|...+..+. .+.+.|++|||.|.....|++|+|+|+                      
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~----------------------  185 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT----------------------  185 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC----------------------
Confidence            345679999999988888877777765444 567999999999999999999999996                      


Q ss_pred             cccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCcc
Q 009831          317 IKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTF  394 (524)
Q Consensus       317 ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F  394 (524)
                       -+++|.+||          |.|.+..-|+-|+|.|+|||||.|..|+ |.|..+++|+.||+ |.+.|+|+|. |+|+|
T Consensus       186 -l~c~C~iCG----------KaFSRPWLLQGHiRTHTGEKPF~C~hC~-kAFADRSNLRAHmQTHS~~K~~qC~~C~KsF  253 (279)
T KOG2462|consen  186 -LPCECGICG----------KAFSRPWLLQGHIRTHTGEKPFSCPHCG-KAFADRSNLRAHMQTHSDVKKHQCPRCGKSF  253 (279)
T ss_pred             -CCccccccc----------ccccchHHhhcccccccCCCCccCCccc-chhcchHHHHHHHHhhcCCccccCcchhhHH
Confidence             579999999          9999999999999999999999999999 99999999999999 9999999999 99999


Q ss_pred             CChhHHHHHHHh
Q 009831          395 SRKDKLFGHIAL  406 (524)
Q Consensus       395 ~~ks~L~~H~r~  406 (524)
                      ++++.|.+|...
T Consensus       254 sl~SyLnKH~ES  265 (279)
T KOG2462|consen  254 ALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHhhhh
Confidence            999999999864

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.83  E-value=8.7e-21  Score=205.36  Aligned_cols=86  Identities=21%  Similarity=0.384  Sum_probs=79.2

Q ss_pred             ccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCC-CCCCC---CCCCCCCCCcc
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAI-PLDET---IKGLAGPSDRR  430 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k-~~~C~---~C~~~f~~~~~  430 (524)
                      |-.|-+|. |..+-.+.|+.|.| |+|||||+|. ||++|++|.+|+.||-+|...-|.+ ++.|+   ||-+.|...-.
T Consensus       605 PNqCiiC~-rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  605 PNQCIICL-RVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             ccceeeee-ecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            57899999 99999999999999 9999999999 9999999999999999997655554 69999   99999999999


Q ss_pred             ccccccccCCCCC
Q 009831          431 EGNEATSKIGSTN  443 (524)
Q Consensus       431 l~~H~~~~~gs~~  443 (524)
                      |..|++.|.+...
T Consensus       684 lpQhIriH~~~~~  696 (958)
T KOG1074|consen  684 LPQHIRIHLGGQI  696 (958)
T ss_pred             ccceEEeecCCCC
Confidence            9999999997543

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.76  E-value=1.8e-19  Score=192.09  Aligned_cols=76  Identities=24%  Similarity=0.440  Sum_probs=72.9

Q ss_pred             ccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcccccc
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNE  434 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H  434 (524)
                      +|.|+.|+ |.|...+.|.+|.- |+|.|||+|. |.|+|+.|..|..|+|+|.|   +|||.|+.|+|+|+...+...|
T Consensus       894 myaCDqCD-K~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSG---EKPfQCdKClKRFSHSGSYSQH  969 (1007)
T KOG3623|consen  894 MYACDQCD-KAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSG---EKPFQCDKCLKRFSHSGSYSQH  969 (1007)
T ss_pred             cchHHHHH-HHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccC---CCcchhhhhhhhcccccchHhh
Confidence            59999999 99999999999998 9999999999 99999999999999999999   6778899999999999999999


Q ss_pred             cc
Q 009831          435 AT  436 (524)
Q Consensus       435 ~~  436 (524)
                      |.
T Consensus       970 MN  971 (1007)
T KOG3623|consen  970 MN  971 (1007)
T ss_pred             hc
Confidence            85

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.70  E-value=9.1e-18  Score=182.20  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=42.0

Q ss_pred             CCCcccCCCCCCCChhhhhhhhhhccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          241 EDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       241 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ..|.-|-+...+.+.+.+  |.++|+||+||+|++||+.|.++.+|+.||-+|...
T Consensus       606 NqCiiC~rVlSC~saLqm--HyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~  659 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQM--HYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK  659 (958)
T ss_pred             cceeeeeecccchhhhhh--hhhcccCcCccccccccchhccccchhhcccccccC
Confidence            446666666666665544  455677999999999999999999999999999654

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.70  E-value=2.2e-18  Score=171.19  Aligned_cols=169  Identities=18%  Similarity=0.268  Sum_probs=137.5

Q ss_pred             hhhhhhhhhccCCcceecCCCCCccCChHHHHHHHhhhCCC-------------CCChhhhcCccccCCCCCCccccccC
Q 009831          256 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDE-------------YKTPAALAKPHKESSSEPMLIKRYSC  322 (524)
Q Consensus       256 ~~~~~~~~~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e-------------f~~~~~L~~H~~~h~~~h~~ekpy~C  322 (524)
                      ..+..+.+.|.++|...|+.||.-|.++..|-.|.|.-+.-             |.+...|+.|+.+|.      .-|+|
T Consensus       193 ~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv------n~ykC  266 (467)
T KOG3608|consen  193 YRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV------NCYKC  266 (467)
T ss_pred             HHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh------hcccc
Confidence            33444555666777777777777777777777777654322             677777777777654      56999


Q ss_pred             CCCCcccCcCcCCccccchhhccccceee-ecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc---CCCccCCh
Q 009831          323 PYAGCKRNKDHKKFQPLKTILCVKNHYKR-THCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS---CGTTFSRK  397 (524)
Q Consensus       323 ~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~-h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~---Cgk~F~~k  397 (524)
                      +.|.          ......+.|.+|++. |...|||+|+.|+ +.|.+.++|.+|.. |. +--|.|+   |..+|++.
T Consensus       267 plCd----------mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd-~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~  334 (467)
T KOG3608|consen  267 PLCD----------MTCSSASSLTTHIRYRHSKDKPFKCDECD-TRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTY  334 (467)
T ss_pred             cccc----------cCCCChHHHHHHHHhhhccCCCccccchh-hhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHH
Confidence            9999          888899999999875 4568999999999 99999999999999 98 6679997   99999999


Q ss_pred             hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccccCCCC
Q 009831          398 DKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGST  442 (524)
Q Consensus       398 s~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~gs~  442 (524)
                      ..|++|++-|+......+|.|-.|.+.|.+...|..|.+..++-+
T Consensus       335 ~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~  379 (467)
T KOG3608|consen  335 TQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFR  379 (467)
T ss_pred             HHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhccc
Confidence            999999998775555678999999999999999999998877643

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.59  E-value=2e-16  Score=146.92  Aligned_cols=109  Identities=29%  Similarity=0.609  Sum_probs=97.4

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccc
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNH  348 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H  348 (524)
                      ..|.|.+|+|.|.....|.+||+-|...                     |+|-|..||          +.|.....|++|
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~v---------------------kr~lct~cg----------kgfndtfdlkrh  164 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDV---------------------KRHLCTFCG----------KGFNDTFDLKRH  164 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHH---------------------HHHHHhhcc----------Ccccchhhhhhh
Confidence            4599999999999999999999999887                     999999999          888888899999


Q ss_pred             eeeecCCCccccCCCCCccccChhhhhhhhc--cc----------CCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          349 YKRTHCDKSYVCSRCNTKKFSVIADLKTHEK--HC----------GKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       349 ~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Ht----------gekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      +|+|++.+||+|..|+ |.|.++-.|..|.+  |.          .+|-|.|+ ||.+-.+...+..|++.|+.
T Consensus       165 ~rthtgvrpykc~~c~-kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  165 TRTHTGVRPYKCSLCE-KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             hccccCccccchhhhh-HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            9999999999999999 99999999999986  63          25678999 99999999999999998765

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.57  E-value=1.8e-16  Score=147.26  Aligned_cols=113  Identities=21%  Similarity=0.305  Sum_probs=103.1

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccC
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFS  395 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~  395 (524)
                      ..|.|.+||          +.|....-|.+|++||..-|.|-|..|| |.|...-+|++|+| |+|.+||+|. |+|+|+
T Consensus       116 d~ftCrvCg----------K~F~lQRmlnrh~kch~~vkr~lct~cg-kgfndtfdlkrh~rthtgvrpykc~~c~kaft  184 (267)
T KOG3576|consen  116 DSFTCRVCG----------KKFGLQRMLNRHLKCHSDVKRHLCTFCG-KGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFT  184 (267)
T ss_pred             Ceeeeehhh----------hhhhHHHHHHHHhhhccHHHHHHHhhcc-CcccchhhhhhhhccccCccccchhhhhHHHH
Confidence            679999999          8899888999999999999999999999 99999999999999 9999999999 999999


Q ss_pred             ChhHHHHHHHhhcC--------CCCCCCCCCCCCCCCCCCCccccccccccCCC
Q 009831          396 RKDKLFGHIALFQG--------HTPAIPLDETIKGLAGPSDRREGNEATSKIGS  441 (524)
Q Consensus       396 ~ks~L~~H~r~Htg--------~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~gs  441 (524)
                      +.-.|..|++.-+|        ++..+.|.|+.||..-.....+..|.+.|+..
T Consensus       185 qrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  185 QRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             hhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            99999999875444        45678899999999999888888998887653

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.51  E-value=2.4e-15  Score=149.76  Aligned_cols=155  Identities=20%  Similarity=0.352  Sum_probs=132.6

Q ss_pred             ceecCC--CCCccCChHHHHHHHhhhCCC-----------CCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCc
Q 009831          270 THFCTI--CGKGFKRDANLRMHMRGHGDE-----------YKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKF  336 (524)
Q Consensus       270 ~~~C~~--CgK~F~~~~~L~~H~r~H~~e-----------f~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~  336 (524)
                      .+.|..  |-+.|..++.|+.|+|.|+++           |.++..|-.|.++..  -....+|.|..|-          
T Consensus       177 v~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt--~l~~n~fqC~~C~----------  244 (467)
T KOG3608|consen  177 VTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQT--ELNTNSFQCAQCF----------  244 (467)
T ss_pred             eeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhh--hhcCCchHHHHHH----------
Confidence            366764  999999999999999999998           888888888876532  2233689999998          


Q ss_pred             cccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc--ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          337 QPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK--HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       337 k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |.|.+...|+.|+++|.  .-|+|+.|+ -.....+.|.+|+|  |..+|||+|+ |.+.|.+.+.|.+|+.+|.    .
T Consensus       245 KrFaTeklL~~Hv~rHv--n~ykCplCd-mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS----~  317 (467)
T KOG3608|consen  245 KRFATEKLLKSHVVRHV--NCYKCPLCD-MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS----K  317 (467)
T ss_pred             HHHhHHHHHHHHHHHhh--hcccccccc-cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc----c
Confidence            88999888999988886  459999999 99999999999998  9999999999 9999999999999999997    3


Q ss_pred             CCCCCCC--CCCCCCCCccccccccccC-CCCC
Q 009831          414 IPLDETI--KGLAGPSDRREGNEATSKI-GSTN  443 (524)
Q Consensus       414 k~~~C~~--C~~~f~~~~~l~~H~~~~~-gs~~  443 (524)
                      ..|.|+.  |...|.....+.+|++.++ |..+
T Consensus       318 ~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np  350 (467)
T KOG3608|consen  318 TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNP  350 (467)
T ss_pred             cceecCCCCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            4577877  9899998899999999876 5443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.38  E-value=7.6e-14  Score=149.59  Aligned_cols=79  Identities=25%  Similarity=0.548  Sum_probs=60.2

Q ss_pred             CCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccc
Q 009831          267 APHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVK  346 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~  346 (524)
                      .+-.|.|+.|+|+|...+.|.+|..-|+|.                     |||+|.+|.                    
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHsGq---------------------RPyqC~iCk--------------------  929 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHSGQ---------------------RPYQCIICK--------------------  929 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhcCC---------------------CCcccchhh--------------------
Confidence            445688888888888888888887767665                     666555554                    


Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHH
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIA  405 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r  405 (524)
                                         |.|+.+.+|..|+| |.|||||+|+ |+|+|+......+||-
T Consensus       930 -------------------KAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  930 -------------------KAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             -------------------HhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence                               77777778888888 8888888888 8888888888888875

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.02  E-value=3.3e-10  Score=122.95  Aligned_cols=98  Identities=16%  Similarity=0.273  Sum_probs=75.4

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccC
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFS  395 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~  395 (524)
                      +.+.|++|+          +.|. ...|+.|++.+|  ++|.|+ |+ +.+ .+..|..|++ |+.+|++.|. |++.|.
T Consensus       452 ~H~~C~~Cg----------k~f~-~s~LekH~~~~H--kpv~Cp-Cg-~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~  515 (567)
T PLN03086        452 NHVHCEKCG----------QAFQ-QGEMEKHMKVFH--EPLQCP-CG-VVL-EKEQMVQHQASTCPLRLITCRFCGDMVQ  515 (567)
T ss_pred             cCccCCCCC----------Cccc-hHHHHHHHHhcC--CCccCC-CC-CCc-chhHHHhhhhccCCCCceeCCCCCCccc
Confidence            446899999          6664 466888988876  889999 98 766 5689999998 9999999999 999985


Q ss_pred             C----------hhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcccccccc
Q 009831          396 R----------KDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEAT  436 (524)
Q Consensus       396 ~----------ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~  436 (524)
                      .          .+.|..|..++ |   .+++.|..||+.+.. ..+..|+.
T Consensus       516 ~g~~~~d~~d~~s~Lt~HE~~C-G---~rt~~C~~Cgk~Vrl-rdm~~H~~  561 (567)
T PLN03086        516 AGGSAMDVRDRLRGMSEHESIC-G---SRTAPCDSCGRSVML-KEMDIHQI  561 (567)
T ss_pred             cCccccchhhhhhhHHHHHHhc-C---CcceEccccCCeeee-hhHHHHHH
Confidence            2          35788888875 5   667788889887765 34455543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.98  E-value=4.8e-10  Score=121.69  Aligned_cols=114  Identities=21%  Similarity=0.390  Sum_probs=69.7

Q ss_pred             eecCC--CCCccCChHHHHHHHh--hhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccc
Q 009831          271 HFCTI--CGKGFKRDANLRMHMR--GHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVK  346 (524)
Q Consensus       271 ~~C~~--CgK~F~~~~~L~~H~r--~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~  346 (524)
                      -.|+.  ||..|. +..|..|..  .....| ....|..|++.|+      ++|.|+ ||          +.+ ....|.
T Consensus       434 V~Cp~~~Cg~v~~-r~el~~H~~C~~Cgk~f-~~s~LekH~~~~H------kpv~Cp-Cg----------~~~-~R~~L~  493 (567)
T PLN03086        434 VVCPHDGCGIVLR-VEEAKNHVHCEKCGQAF-QQGEMEKHMKVFH------EPLQCP-CG----------VVL-EKEQMV  493 (567)
T ss_pred             eeCCcccccceee-ccccccCccCCCCCCcc-chHHHHHHHHhcC------CCccCC-CC----------CCc-chhHHH
Confidence            45663  777773 445566642  112224 3456777766531      677777 77          433 345677


Q ss_pred             cceeeecCCCccccCCCCCcccc----------ChhhhhhhhcccCCCceecc-CCCccCChhHHHHHHHh
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFS----------VIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~----------~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      .|++.|...|++.|..|+ +.|.          ....|..|+..+|.+++.|. ||+.|..+. |..|+..
T Consensus       494 ~H~~thCp~Kpi~C~fC~-~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlrd-m~~H~~~  562 (567)
T PLN03086        494 QHQASTCPLRLITCRFCG-DMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLKE-MDIHQIA  562 (567)
T ss_pred             hhhhccCCCCceeCCCCC-CccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeehh-HHHHHHH
Confidence            777666667777777777 7764          23467777774477777777 777776443 5666544

>PHA00733 hypothetical protein

Probab=98.85  E-value=1.5e-09  Score=97.13  Aligned_cols=78  Identities=22%  Similarity=0.385  Sum_probs=58.5

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhc------cccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILC------VKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-  389 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~------L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-  389 (524)
                      |++.|.+|.          +.+.....      |.+|+ .++.++||.|+.|+ +.|.....|..|++ |  +++|.|. 
T Consensus        39 ~~~~~~~~~----------~~~~~~~~l~~~~~l~~~~-~~~~~kPy~C~~Cg-k~Fss~s~L~~H~r~h--~~~~~C~~  104 (128)
T PHA00733         39 KRLIRAVVK----------TLIYNPQLLDESSYLYKLL-TSKAVSPYVCPLCL-MPFSSSVSLKQHIRYT--EHSKVCPV  104 (128)
T ss_pred             hhHHHHHHh----------hhccChhhhcchHHHHhhc-ccCCCCCccCCCCC-CcCCCHHHHHHHHhcC--CcCccCCC
Confidence            778888887          33333333      44453 33457889999998 88999899988888 7  4578898 


Q ss_pred             CCCccCChhHHHHHHHhhcC
Q 009831          390 CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       390 Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++.|.....|..|++..++
T Consensus       105 CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        105 CGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCHHHHHHHHHHhcC
Confidence            99999999999888887654

>PHA00733 hypothetical protein

Probab=98.82  E-value=1.2e-09  Score=97.74  Aligned_cols=94  Identities=15%  Similarity=0.054  Sum_probs=73.8

Q ss_pred             hhhccccceeeecCCCccccCCCCCccccChhhhhhh------hcccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          341 TILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTH------EKHCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       341 ~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H------~rHtgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      +...|+++....-..|++.|.+|. +.|.....|..|      +.+.+++||.|. ||+.|.+...|..|+++|.     
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~-----   97 (128)
T PHA00733         24 TLEELKRYHSLTPEQKRLIRAVVK-TLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTE-----   97 (128)
T ss_pred             CHHHhhhhhcCChhhhhHHHHHHh-hhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCC-----
Confidence            333343333333335789999998 888887777666      234568999999 9999999999999999863     


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCC
Q 009831          414 IPLDETIKGLAGPSDRREGNEATSKIG  440 (524)
Q Consensus       414 k~~~C~~C~~~f~~~~~l~~H~~~~~g  440 (524)
                      .+|.|.+|++.|.....|..|+...++
T Consensus        98 ~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         98 HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            358999999999999999999987765

>PHA02768 hypothetical protein; Provisional

Probab=98.71  E-value=4.3e-09  Score=79.09  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             cccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHH
Q 009831          358 YVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKL  400 (524)
Q Consensus       358 y~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L  400 (524)
                      |.|+.|| |.|.+..+|..|+| |+  ++|+|. |+|.|.+.+.|
T Consensus         6 y~C~~CG-K~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICG-EIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhC-CeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            4555555 55555555555555 55  455555 55555554444

>PHA02768 hypothetical protein; Provisional

Probab=98.58  E-value=3.8e-08  Score=74.04  Aligned_cols=43  Identities=12%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcccc
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREG  432 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~  432 (524)
                      -|.|+ |||.|++.++|..|+++|+     ++++|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-----k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-----TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-----CcccCCcccceecccceeE
Confidence            38999 9999999999999999997     4778899999998776654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.33  E-value=1.8e-07  Score=60.03  Aligned_cols=24  Identities=38%  Similarity=0.995  Sum_probs=19.2

Q ss_pred             hhhhhhc-ccCCCceecc-CCCccCC
Q 009831          373 DLKTHEK-HCGKDKWLCS-CGTTFSR  396 (524)
Q Consensus       373 ~L~~H~r-Htgekpy~C~-Cgk~F~~  396 (524)
                      +|++|++ |+|+|||.|+ |+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            4778888 8888888888 8888863

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.30  E-value=3.3e-07  Score=94.27  Aligned_cols=81  Identities=27%  Similarity=0.531  Sum_probs=65.3

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-cc--------CCC----
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HC--------GKD----  384 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Ht--------gek----  384 (524)
                      .-|.|..|.          ..|.....|.+|.---.-.--|+|++|+ |.|+-..+|..|.| |.        |..    
T Consensus       266 GdyiCqLCK----------~kYeD~F~LAQHrC~RIV~vEYrCPEC~-KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~  334 (500)
T KOG3993|consen  266 GDYICQLCK----------EKYEDAFALAQHRCPRIVHVEYRCPECD-KVFSCPANLASHRRWHKPRPEAAKAGSPPPKQ  334 (500)
T ss_pred             HHHHHHHHH----------HhhhhHHHHhhccCCeeEEeeecCCccc-ccccCchhhhhhhcccCCchhhhhcCCCChhh
Confidence            459999998          7777777888773211122359999999 99999999999999 83        211    


Q ss_pred             ---------------------ceecc-CCCccCChhHHHHHHHhhcC
Q 009831          385 ---------------------KWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       385 ---------------------py~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                                           -|.|. |+|.|.+...|++|+.+|+.
T Consensus       335 ~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  335 AVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             hhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                                 38999 99999999999999999874

>PHA00616 hypothetical protein

Probab=97.97  E-value=2e-06  Score=61.70  Aligned_cols=26  Identities=23%  Similarity=0.644  Sum_probs=12.9

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      ||+|. ||+.|.+++.|.+|++.|+|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence            34455 555555555555555555543

>PHA00616 hypothetical protein

Probab=97.90  E-value=4e-06  Score=60.19  Aligned_cols=27  Identities=19%  Similarity=0.390  Sum_probs=26.0

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +|+|..||+.|..+..|.+|++.|+++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence            589999999999999999999999998

>PHA00732 hypothetical protein

Probab=97.90  E-value=7.1e-06  Score=67.17  Aligned_cols=44  Identities=23%  Similarity=0.485  Sum_probs=30.5

Q ss_pred             ccccCCCCCccccChhhhhhhhc--ccCCCceecc-CCCccCChhHHHHHHHhh
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK--HCGKDKWLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r--Htgekpy~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      ||.|..|+ +.|.+...|+.|++  |.   ++.|. ||++|.   .|..|++++
T Consensus         1 py~C~~Cg-k~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICG-FTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCC-CccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            46777777 77777777777775  43   34677 777776   466777554

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.89  E-value=5.8e-06  Score=85.35  Aligned_cols=158  Identities=16%  Similarity=0.042  Sum_probs=100.9

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCCC----------CChhhhcCc--cccCCCCCCccccccCCCCCcccCcCcCCc
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDEY----------KTPAALAKP--HKESSSEPMLIKRYSCPYAGCKRNKDHKKF  336 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~ef----------~~~~~L~~H--~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~  336 (524)
                      -.|+|++|+|+|....+|..|.|.|.-.-          +....-..-  ..........+.-|.|.+|+          
T Consensus       294 vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~----------  363 (500)
T KOG3993|consen  294 VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCG----------  363 (500)
T ss_pred             eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhh----------
Confidence            34999999999999999999999994320          000000000  00001111223479999999          


Q ss_pred             cccchhhccccceeeecCC---C--------------ccccCCCCCccccChhhhhhhhc-ccC-CCceecc-CCCccCC
Q 009831          337 QPLKTILCVKNHYKRTHCD---K--------------SYVCSRCNTKKFSVIADLKTHEK-HCG-KDKWLCS-CGTTFSR  396 (524)
Q Consensus       337 k~f~~~~~L~~H~~~h~~~---K--------------py~C~~C~~K~F~~~s~L~~H~r-Htg-ekpy~C~-Cgk~F~~  396 (524)
                      +.|++...|++|...|+.-   |              .+-|..|. -.+.....--.|.- +.+ .....|. ||-.|..
T Consensus       364 KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a-~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppss  442 (500)
T KOG3993|consen  364 KKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVA-THSSASDSHGDEVLYVAGSAELELPPYDGSPPSS  442 (500)
T ss_pred             hhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccc-cccccccccccceeeeeccccccCCCCCCCCccc
Confidence            8999999999997777641   1              25566666 44443332222222 322 1224567 8888888


Q ss_pred             hhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccccCC
Q 009831          397 KDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIG  440 (524)
Q Consensus       397 ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~g  440 (524)
                      +..--.|.+.-.   .+.-|.|.+|-..|.....|.+|+...+-
T Consensus       443 s~~sgg~~rlg~---~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  443 SGSSGGYGRLGI---AEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             CCCCCccccccc---hhhccccccchHhhhcCcchHhHhhhcCh
Confidence            877766766522   25678899999999999999998876543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.76  E-value=1.4e-05  Score=51.25  Aligned_cols=21  Identities=67%  Similarity=1.229  Sum_probs=19.4

Q ss_pred             HHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCC
Q 009831          285 NLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAG  326 (524)
Q Consensus       285 ~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cg  326 (524)
                      +|.+||++|+++                     |||.|++|+
T Consensus         1 ~l~~H~~~H~~~---------------------k~~~C~~C~   21 (26)
T PF13465_consen    1 NLRRHMRTHTGE---------------------KPYKCPYCG   21 (26)
T ss_dssp             HHHHHHHHHSSS---------------------SSEEESSSS
T ss_pred             CHHHHhhhcCCC---------------------CCCCCCCCc
Confidence            588999999988                     999999999

...

>PHA00732 hypothetical protein

Probab=97.70  E-value=2.5e-05  Score=63.93  Aligned_cols=46  Identities=17%  Similarity=0.081  Sum_probs=38.1

Q ss_pred             ceecc-CCCccCChhHHHHHHHh-hcCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIAL-FQGHTPAIPLDETIKGLAGPSDRREGNEATSKI  439 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~-Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~  439 (524)
                      ||.|. ||+.|.+...|..|++. |++      +.|+.|++.|.   .+..|.+++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~------~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL------TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC------CccCCCCCEeC---ChhhhhcccC
Confidence            68999 99999999999999985 543      47999999997   4777775443

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.56  E-value=4.5e-05  Score=47.11  Aligned_cols=23  Identities=52%  Similarity=1.001  Sum_probs=21.9

Q ss_pred             eecCCCCCccCChHHHHHHHhhh
Q 009831          271 HFCTICGKGFKRDANLRMHMRGH  293 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~H  293 (524)
                      |.|++|++.|.+...|+.||+.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.56  E-value=2.4e-05  Score=78.10  Aligned_cols=49  Identities=31%  Similarity=0.580  Sum_probs=29.2

Q ss_pred             CCccccCC--CCCccccChhhhhhhhc--c------------------cCCCceecc-CCCccCChhHHHHHH
Q 009831          355 DKSYVCSR--CNTKKFSVIADLKTHEK--H------------------CGKDKWLCS-CGTTFSRKDKLFGHI  404 (524)
Q Consensus       355 ~Kpy~C~~--C~~K~F~~~s~L~~H~r--H------------------tgekpy~C~-Cgk~F~~ks~L~~H~  404 (524)
                      +|||+|++  |. |+|+..-.|+-|+.  |                  ...|||+|+ |+|+|+....|+-|+
T Consensus       347 ~KpykCpV~gC~-K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCN-KKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCch-hhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            35555554  55 55555555555554  4                  124677777 777777777776664

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.48  E-value=0.00011  Score=55.78  Aligned_cols=48  Identities=25%  Similarity=0.556  Sum_probs=36.3

Q ss_pred             ccccCCCCCccccChhhhhhhhc--ccCC-Cceecc-CCCccCChhHHHHHHHhhc
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK--HCGK-DKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r--Htge-kpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      .|.|++|+ +. .....|..|..  |..+ +.+.|+ |...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~-~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCG-KG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCC-Cc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            47888898 84 45678899976  7765 568899 988655  48888988765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.40  E-value=4.4e-05  Score=76.25  Aligned_cols=57  Identities=37%  Similarity=0.683  Sum_probs=46.1

Q ss_pred             ccccccCCCCCcccCcCcCCccccchhhccccceeeecC-------------------CCccccCCCCCccccChhhhhh
Q 009831          316 LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC-------------------DKSYVCSRCNTKKFSVIADLKT  376 (524)
Q Consensus       316 ~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~-------------------~Kpy~C~~C~~K~F~~~s~L~~  376 (524)
                      ++|||+|++-||.        |.++....|+.|+.--|+                   .|||+|++|+ |+|+..-.|+-
T Consensus       346 d~KpykCpV~gC~--------K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~-KRYKNlNGLKY  416 (423)
T COG5189         346 DGKPYKCPVEGCN--------KKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD-KRYKNLNGLKY  416 (423)
T ss_pred             cCceecCCCCCch--------hhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccc-hhhccCcccee
Confidence            4699999998887        778888888888654442                   3799999999 99999999999


Q ss_pred             hhccc
Q 009831          377 HEKHC  381 (524)
Q Consensus       377 H~rHt  381 (524)
                      |++|.
T Consensus       417 Hr~Hs  421 (423)
T COG5189         417 HRKHS  421 (423)
T ss_pred             ccccc
Confidence            97775

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.35  E-value=0.00013  Score=45.05  Aligned_cols=22  Identities=36%  Similarity=0.794  Sum_probs=16.5

Q ss_pred             eecc-CCCccCChhHHHHHHHhh
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      |.|. |++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            6677 777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.07  E-value=0.00045  Score=42.51  Aligned_cols=24  Identities=50%  Similarity=1.010  Sum_probs=20.4

Q ss_pred             eecCCCCCccCChHHHHHHHhhhC
Q 009831          271 HFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      |.|++|++.|.+...|+.|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999874

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.88  E-value=0.00064  Score=43.62  Aligned_cols=26  Identities=38%  Similarity=0.638  Sum_probs=23.8

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      +|+|..|++.|.....|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999998853

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.77  E-value=0.0011  Score=40.68  Aligned_cols=22  Identities=32%  Similarity=0.779  Sum_probs=14.5

Q ss_pred             eecc-CCCccCChhHHHHHHHhh
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      |.|. |++.|.++..|..|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            5677 777777777777777765

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.72  E-value=0.00053  Score=51.93  Aligned_cols=47  Identities=26%  Similarity=0.588  Sum_probs=37.1

Q ss_pred             cccCCCCCcccCcCcCCccccchhhccccceeeecC--CCccccCCCCCccccChhhhhhhhc
Q 009831          319 RYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC--DKSYVCSRCNTKKFSVIADLKTHEK  379 (524)
Q Consensus       319 py~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~--~Kpy~C~~C~~K~F~~~s~L~~H~r  379 (524)
                      .|.||+|+          + ..+...|..|....|.  .+.+.|++|. ..+.  .+|..|++
T Consensus         2 ~f~CP~C~----------~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~-~~~~--~~l~~Hl~   50 (54)
T PF05605_consen    2 SFTCPYCG----------K-GFSESSLVEHCEDEHRSESKNVVCPICS-SRVT--DNLIRHLN   50 (54)
T ss_pred             CcCCCCCC----------C-ccCHHHHHHHHHhHCcCCCCCccCCCch-hhhh--hHHHHHHH
Confidence            48999999          7 4455678899777665  3689999999 7655  49999997

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.55  E-value=0.0013  Score=42.17  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=13.8

Q ss_pred             ceecc-CCCccCChhHHHHHHHhh
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      ||.|. |++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            45566 666666666666666554

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.022  Score=63.52  Aligned_cols=128  Identities=23%  Similarity=0.278  Sum_probs=75.1

Q ss_pred             eecCCCCCcc---------------CChHHHHHHHh-hhCCC-----------------CCChhhhcCccccCCC---CC
Q 009831          271 HFCTICGKGF---------------KRDANLRMHMR-GHGDE-----------------YKTPAALAKPHKESSS---EP  314 (524)
Q Consensus       271 ~~C~~CgK~F---------------~~~~~L~~H~r-~H~~e-----------------f~~~~~L~~H~~~h~~---~h  314 (524)
                      +.|.+|++.|               .....|+.||+ .|..-                 ..+...|..|++.-..   .+
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~  179 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESC  179 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccc
Confidence            5677776666               36788999985 45322                 2355667777653211   11


Q ss_pred             CccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCC------CCccccChhhhhhhhc-ccCCCcee
Q 009831          315 MLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRC------NTKKFSVIADLKTHEK-HCGKDKWL  387 (524)
Q Consensus       315 ~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C------~~K~F~~~s~L~~H~r-Htgekpy~  387 (524)
                      .|  --.|.+|.          ..|-....|.+|++.+|    |.|..|      + .-|....+|..|-| ++    |.
T Consensus       180 rG--hp~C~~C~----------~~fld~~el~rH~~~~h----~~chfC~~~~~~n-eyy~~~~dLe~HfR~~H----fl  238 (669)
T KOG2231|consen  180 RG--HPLCKFCH----------ERFLDDDELYRHLRFDH----EFCHFCDYKTGQN-EYYNDYDDLEEHFRKGH----FL  238 (669)
T ss_pred             cC--Cccchhhh----------hhhccHHHHHHhhccce----eheeecCcccccc-hhcccchHHHHHhhhcC----cc
Confidence            11  13677887          67777777777776555    455555      3 45777788999987 32    66


Q ss_pred             cc---C-CCccCChhHHHHHHHhhcC-CCCCCCCCCC
Q 009831          388 CS---C-GTTFSRKDKLFGHIALFQG-HTPAIPLDET  419 (524)
Q Consensus       388 C~---C-gk~F~~ks~L~~H~r~Htg-~kp~k~~~C~  419 (524)
                      |.   | .+.|.....+..|++.|.. ++.+++|-|.
T Consensus       239 CE~~~C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~  275 (669)
T KOG2231|consen  239 CEEEFCRTKKFYVAFELEIELKAHNRFIQHEKCYICR  275 (669)
T ss_pred             ccccccccceeeehhHHHHHHHhhccccchheeccCC
Confidence            75   5 3455555455555553331 2234555553

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.38  E-value=0.0026  Score=66.86  Aligned_cols=145  Identities=18%  Similarity=0.176  Sum_probs=108.5

Q ss_pred             cceecCCCCCccCChHHHHHHHh--hhCCCCCChhhhcCccccCCCCCCccccccCC--CCCcccCcCcCCccccchhhc
Q 009831          269 HTHFCTICGKGFKRDANLRMHMR--GHGDEYKTPAALAKPHKESSSEPMLIKRYSCP--YAGCKRNKDHKKFQPLKTILC  344 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r--~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~--~Cgc~~~~~~~~~k~f~~~~~  344 (524)
                      .++.|..|.+.|.+...|.+|.+  .|.++-                   -+++.|+  .|+          +.|.....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~-------------------~~~~~~p~~~~~----------~~~~~~~~  338 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES-------------------LKPFSCPYSLCG----------KLFSRNDA  338 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccccc-------------------CCceeeeccCCC----------cccccccc
Confidence            47999999999999999999998  565540                   1899999  799          88999999


Q ss_pred             cccceeeecCCCccccCC--CCCccccChhhhh----hhh-c-ccCCCceecc---CCCccCChhHHHHHHHhhcCCCCC
Q 009831          345 VKNHYKRTHCDKSYVCSR--CNTKKFSVIADLK----THE-K-HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       345 L~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~----~H~-r-Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      +..|+.+|.+.+++.|..  |. +.+.....-.    .+. . ....+.+.|.   |-..+.+...+..|...|.... .
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  416 (467)
T COG5048         339 LKRHILLHTSISPAKEKLLNSS-SKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFR-P  416 (467)
T ss_pred             ccCCcccccCCCccccccccCc-cccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccC-C
Confidence            999999999988888754  55 5555544421    111 1 3345667776   8888888888888888776533 2


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCCCCC
Q 009831          414 IPLDETIKGLAGPSDRREGNEATSKIGSTNF  444 (524)
Q Consensus       414 k~~~C~~C~~~f~~~~~l~~H~~~~~gs~~~  444 (524)
                      ..+.|..|.+.+.....+..|++.+......
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         417 YNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             cCCCCCcchhhccCcccccccccccccCCce
Confidence            3567888888888888888888777654443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.37  E-value=0.0023  Score=53.69  Aligned_cols=72  Identities=18%  Similarity=0.282  Sum_probs=20.4

Q ss_pred             cCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhcccCCCceecc-CCCccCChhH
Q 009831          321 SCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDK  399 (524)
Q Consensus       321 ~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~  399 (524)
                      +|.+|+          ..|.....|..|+...|+-..-    .. +.+.....|..+.+..-...|.|. |++.|.....
T Consensus         1 ~C~~C~----------~~f~~~~~l~~H~~~~H~~~~~----~~-~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~   65 (100)
T PF12756_consen    1 QCLFCD----------ESFSSVDDLLQHMKKKHGFDIP----DQ-KYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREA   65 (100)
T ss_dssp             ---------------------------------------------------------------SSEEBSSSS-EESSHHH
T ss_pred             Cccccc----------cccccccccccccccccccccc----cc-cccccccccccccccccCCCCCCCccCCCCcCHHH
Confidence            488888          7788888888888766653211    11 223334444445442223379999 9999999999


Q ss_pred             HHHHHHhh
Q 009831          400 LFGHIALF  407 (524)
Q Consensus       400 L~~H~r~H  407 (524)
                      |..||+.+
T Consensus        66 l~~Hm~~~   73 (100)
T PF12756_consen   66 LQEHMRSK   73 (100)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHcCc
Confidence            99999975

>smart00355 ZnF_C2H2 zinc finger

Probab=96.24  E-value=0.0039  Score=38.70  Aligned_cols=24  Identities=46%  Similarity=0.786  Sum_probs=22.3

Q ss_pred             eecCCCCCccCChHHHHHHHhhhC
Q 009831          271 HFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999875

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.19  E-value=0.0021  Score=53.94  Aligned_cols=71  Identities=23%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             ecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccceee
Q 009831          272 FCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKR  351 (524)
Q Consensus       272 ~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~  351 (524)
                      +|..|+..|.....|..||+..++-.                    .+    . .          ..+.....+..+++.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~--------------------~~----~-~----------~~l~~~~~~~~~~~~   45 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD--------------------IP----D-Q----------KYLVDPNRLLNYLRK   45 (100)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccccccccccccccccccccccccc--------------------cc----c-c----------ccccccccccccccc
Confidence            59999999999999999997544320                    00    0 0          011111112222221


Q ss_pred             ecCCCccccCCCCCccccChhhhhhhhc
Q 009831          352 THCDKSYVCSRCNTKKFSVIADLKTHEK  379 (524)
Q Consensus       352 h~~~Kpy~C~~C~~K~F~~~s~L~~H~r  379 (524)
                       .....+.|..|+ +.|.....|..|++
T Consensus        46 -~~~~~~~C~~C~-~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen   46 -KVKESFRCPYCN-KTFRSREALQEHMR   71 (100)
T ss_dssp             ----SSEEBSSSS--EESSHHHHHHHHH
T ss_pred             -ccCCCCCCCccC-CCCcCHHHHHHHHc
Confidence             122369999999 99999999999998

>PRK04860 hypothetical protein; Provisional

Probab=96.13  E-value=0.002  Score=59.97  Aligned_cols=37  Identities=27%  Similarity=0.688  Sum_probs=31.1

Q ss_pred             ccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChh
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKD  398 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks  398 (524)
                      +|.|. |+ +   ....+++|.+ |+|+++|.|. |++.|....
T Consensus       119 ~Y~C~-C~-~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQ-E---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CC-C---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            68998 98 6   6677899999 9999999999 999887654

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.10  E-value=0.01  Score=69.66  Aligned_cols=110  Identities=16%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             cccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCcc
Q 009831          317 IKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTF  394 (524)
Q Consensus       317 ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F  394 (524)
                      .|.|+|+.|+          ..|+....|..|+|..|-+-.-  .+|  +.+.....+.+=.- -.+-++|.|. |..+|
T Consensus       463 ~kt~~cpkc~----------~~yk~a~~L~vhmRskhp~~~~--~~c--~~gq~~~~~arg~~~~~~~~p~~C~~C~~st  528 (1406)
T KOG1146|consen  463 FKTLKCPKCN----------WHYKLAQTLGVHMRSKHPESQS--AYC--KAGQNHPRLARGEVYRCPGKPYPCRACNYST  528 (1406)
T ss_pred             cccccCCccc----------hhhhhHHHhhhcccccccccch--hHh--HhccccccccccccccCCCCcccceeeeeee
Confidence            3889999999          8999999999999885533111  444  23322222222112 3445667777 77777


Q ss_pred             CChhHHHHHHHh--hc--------------------------------------CCCCCCCCCCCCCCCCCCCCcccccc
Q 009831          395 SRKDKLFGHIAL--FQ--------------------------------------GHTPAIPLDETIKGLAGPSDRREGNE  434 (524)
Q Consensus       395 ~~ks~L~~H~r~--Ht--------------------------------------g~kp~k~~~C~~C~~~f~~~~~l~~H  434 (524)
                      +.+.+|.+|+..  |-                                      +-+++-.+.|.+|++--.-...|+.|
T Consensus       529 ttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrih  608 (1406)
T KOG1146|consen  529 TTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIH  608 (1406)
T ss_pred             ecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccc
Confidence            777777777642  11                                      12344468899998887777788888


Q ss_pred             ccccCC
Q 009831          435 ATSKIG  440 (524)
Q Consensus       435 ~~~~~g  440 (524)
                      |.....
T Consensus       609 mtss~~  614 (1406)
T KOG1146|consen  609 MTASPS  614 (1406)
T ss_pred             cccCCC
Confidence            865443

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.82  E-value=0.012  Score=69.02  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=25.3

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      .|.|+|+.|+..|+....|..|||.-+-+
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~  491 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPE  491 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccc
Confidence            48899999999999999999999974433

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.79  E-value=0.0097  Score=43.98  Aligned_cols=38  Identities=18%  Similarity=0.386  Sum_probs=19.0

Q ss_pred             hhhhc--ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          375 KTHEK--HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       375 ~~H~r--Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      ..+.+  +..+.|-.|+ |+..+.+..+|++|+.++++.+|
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34444  3456677777 77777777777777777666544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.79  E-value=0.0071  Score=37.46  Aligned_cols=23  Identities=30%  Similarity=0.704  Sum_probs=16.7

Q ss_pred             eecc-CCCccCChhHHHHHHHhhc
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |.|. |++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            4677 7777777777777777654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.43  E-value=0.0098  Score=37.26  Aligned_cols=23  Identities=39%  Similarity=0.990  Sum_probs=21.4

Q ss_pred             eecCCCCCccCChHHHHHHHhhh
Q 009831          271 HFCTICGKGFKRDANLRMHMRGH  293 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~H  293 (524)
                      |.|.+|++.|.....|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.03  E-value=0.012  Score=43.46  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             cCCCccccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          353 HCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       353 ~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      ..+.|.+|++|+ ..+.+..+|++|+. +++.||
T Consensus        20 ~S~~PatCP~C~-a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICG-AVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT---EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcch-hhccchhhHHHHHHHHhcccC
Confidence            356899999999 99999999999998 777765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.68  E-value=0.02  Score=60.06  Aligned_cols=152  Identities=18%  Similarity=0.217  Sum_probs=93.7

Q ss_pred             CCCCcccCCCCCCCChhhhhhhhhhccCC--cceecC--CCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCC
Q 009831          240 DEDDADDGEQLPPGSYEILQLEKEEILAP--HTHFCT--ICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPM  315 (524)
Q Consensus       240 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--k~~~C~--~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~  315 (524)
                      ...+..|...+........+.....|..+  +++.|+  .|++.|.+...|..|...|.+.                   
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-------------------  349 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI-------------------  349 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC-------------------
Confidence            45566666666555444444442245577  999999  7999999999999999999876                   


Q ss_pred             ccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCC--CCCccccChhhhhhhhc-ccCCCceec--c-
Q 009831          316 LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLC--S-  389 (524)
Q Consensus       316 ~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgekpy~C--~-  389 (524)
                        +++.|....+...........   .......+......+.+.|..  |- +.+.....+..|.. |...+++.|  . 
T Consensus       350 --~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (467)
T COG5048         350 --SPAKEKLLNSSSKFSPLLNNE---PPQSLQQYKDLKNDKKSETLSNSCI-RNFKRDSNLSLHIITHLSFRPYNCKNPP  423 (467)
T ss_pred             --CccccccccCccccccccCCC---CccchhhccCccCCccccccccchh-hhhccccccccccccccccCCcCCCCCc
Confidence              555555444221111100000   000111122223345556644  66 77788888888877 777665444  4 


Q ss_pred             CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          390 CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       390 Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      |.+.|.....|..|++.|..   +.++.|.
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~  450 (467)
T COG5048         424 CSKSFNRHYNLIPHKKIHTN---HAPLLCS  450 (467)
T ss_pred             chhhccCccccccccccccc---CCceeec
Confidence            88899988899988888776   3444444

>PRK04860 hypothetical protein; Provisional

Probab=94.61  E-value=0.025  Score=52.72  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=30.3

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAG  326 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cg  326 (524)
                      .+|.|. |++   ....+++|.++|.++                     ++|.|..|+
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~---------------------~~YrC~~C~  150 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGE---------------------AVYRCRRCG  150 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCC---------------------ccEECCCCC
Confidence            579998 998   678899999999998                     999999999

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.05  E-value=0.017  Score=37.10  Aligned_cols=22  Identities=32%  Similarity=0.842  Sum_probs=20.5

Q ss_pred             eecCCCCCccCChHHHHHHHhh
Q 009831          271 HFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.77  E-value=0.043  Score=34.05  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             eecCCCCCccCChHHHHHHHhhhC
Q 009831          271 HFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      |+|+.|+.... ...|..|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999888 899999999864

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.55  E-value=0.059  Score=33.43  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=13.9

Q ss_pred             eecc-CCCccCChhHHHHHHHhhc
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |+|. |..... +..|.+|+++|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            5677 777776 677777777654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.22  E-value=0.054  Score=33.80  Aligned_cols=21  Identities=29%  Similarity=0.754  Sum_probs=14.1

Q ss_pred             eecc-CCCccCChhHHHHHHHh
Q 009831          386 WLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      |.|. |++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5666 77777777777777654

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.91  E-value=0.094  Score=58.68  Aligned_cols=44  Identities=23%  Similarity=0.457  Sum_probs=23.2

Q ss_pred             ccCCCCCccccChhhhhhhhc-ccCCCceecc-C------CCccCChhHHHHHHHhh
Q 009831          359 VCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C------GTTFSRKDKLFGHIALF  407 (524)
Q Consensus       359 ~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C------gk~F~~ks~L~~H~r~H  407 (524)
                      .|..|. ..|-....|.+|++ ++    |.|. |      +.-|.....|..|.|.+
T Consensus       184 ~C~~C~-~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~  235 (669)
T KOG2231|consen  184 LCKFCH-ERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKG  235 (669)
T ss_pred             cchhhh-hhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhc
Confidence            455565 56666666666655 22    3333 3      33445555666666653

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.71  E-value=0.57  Score=48.03  Aligned_cols=124  Identities=18%  Similarity=0.362  Sum_probs=61.9

Q ss_pred             eecCC--CCCccCChHHHHHHHhhhCCC------------CC------ChhhhcCccccCCCCCCccc-cccCCCCCccc
Q 009831          271 HFCTI--CGKGFKRDANLRMHMRGHGDE------------YK------TPAALAKPHKESSSEPMLIK-RYSCPYAGCKR  329 (524)
Q Consensus       271 ~~C~~--CgK~F~~~~~L~~H~r~H~~e------------f~------~~~~L~~H~~~h~~~h~~ek-py~C~~Cgc~~  329 (524)
                      |.|+.  |..+......|+.|.+.-++.            |.      ++..|..|...-... .|-| --.|.+|.   
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e-~GFKGHP~C~FC~---  227 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEE-EGFKGHPLCIFCK---  227 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccc-cCcCCCchhhhcc---
Confidence            78875  766666677888888764433            21      223334443210000 0111 12577776   


Q ss_pred             CcCcCCccccchhhccccceeeecCCCccccCCCC---CccccChhhhhhhhcccCCCceecc---C--CC--ccCChhH
Q 009831          330 NKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCN---TKKFSVIADLKTHEKHCGKDKWLCS---C--GT--TFSRKDK  399 (524)
Q Consensus       330 ~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~---~K~F~~~s~L~~H~rHtgekpy~C~---C--gk--~F~~ks~  399 (524)
                             +.|-.-..|.+|+|-.| ++-|.|+.-+   ..-|.....|-.|.+|.   -|.|.   |  ||  .|.....
T Consensus       228 -------~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~---hy~ct~qtc~~~k~~vf~~~~e  296 (493)
T COG5236         228 -------IYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRNA---HYCCTFQTCRVGKCYVFPYHTE  296 (493)
T ss_pred             -------ceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhcC---ceEEEEEEEecCcEEEeccHHH
Confidence                   55555445555543322 1112222111   02366666677776511   26665   5  22  5677777


Q ss_pred             HHHHHHhhcC
Q 009831          400 LFGHIALFQG  409 (524)
Q Consensus       400 L~~H~r~Htg  409 (524)
                      |..|+...+|
T Consensus       297 l~~h~~~~h~  306 (493)
T COG5236         297 LLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHhh
Confidence            8888766544

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=90.49  E-value=0.15  Score=32.62  Aligned_cols=21  Identities=43%  Similarity=0.805  Sum_probs=14.4

Q ss_pred             cccCCCCCccccChhhhhhhhc
Q 009831          358 YVCSRCNTKKFSVIADLKTHEK  379 (524)
Q Consensus       358 y~C~~C~~K~F~~~s~L~~H~r  379 (524)
                      |.|..|+ +.|.....|..|++
T Consensus         2 ~~C~~C~-k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACD-KYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTT-BBBSSHHHHHCCTT
T ss_pred             CCcccCC-CCcCCHHHHHHHHc
Confidence            5677777 77777777777665

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.06  E-value=0.32  Score=32.73  Aligned_cols=23  Identities=22%  Similarity=0.820  Sum_probs=20.8

Q ss_pred             ceecCCCCCccCChHHHHHHHhh
Q 009831          270 THFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            48999999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=88.77  E-value=0.35  Score=30.56  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=18.0

Q ss_pred             eecCCCCCccCChHHHHHHHhh
Q 009831          271 HFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      ..|+.||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 67889999864

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.60  E-value=0.77  Score=40.05  Aligned_cols=48  Identities=21%  Similarity=0.419  Sum_probs=27.9

Q ss_pred             ccCCCCCccccChhhhhhhhcccCCCceecc-CCCccCChhHHHHHHHhhc
Q 009831          359 VCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       359 ~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      .|--|. +.|........-. -.....|.|. |...|-..-++..|..+|.
T Consensus        57 ~C~~C~-~~f~~~~~~~~~~-~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        57 FCFGCQ-GPFPKPPVSPFDE-LKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             cccCcC-CCCCCcccccccc-cccccceeCCCCCCccccccchhhhhhccC
Confidence            377777 7776543111000 1223467777 7777777777777777663

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=87.10  E-value=0.49  Score=29.91  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=14.2

Q ss_pred             eecc-CCCccCChhHHHHHHHh
Q 009831          386 WLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      ..|. ||+.| ..+.|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3577 88888 57777777764

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.47  E-value=0.19  Score=48.00  Aligned_cols=77  Identities=27%  Similarity=0.531  Sum_probs=62.7

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc--c---------cCCCce
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK--H---------CGKDKW  386 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--H---------tgekpy  386 (524)
                      +.|.|++-||-        +.|..+.....||..-|+   -.|..|. +.|.+..-|..|+-  |         .|..-|
T Consensus        78 ~~~~cqvagc~--------~~~d~lD~~E~hY~~~h~---~sCs~C~-r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy  145 (253)
T KOG4173|consen   78 PAFACQVAGCC--------QVFDALDDYEHHYHTLHG---NSCSFCK-RAFPTGHLLDAHILEWHDSLFQALVERGQDMY  145 (253)
T ss_pred             ccccccccchH--------HHHhhhhhHHHhhhhccc---chhHHHH-HhCCchhhhhHHHHHHHHHHHHHHHHcCccHH
Confidence            66999998876        667777767777755554   3799999 99999999999986  6         255679


Q ss_pred             ecc---CCCccCChhHHHHHHHh
Q 009831          387 LCS---CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       387 ~C~---Cgk~F~~ks~L~~H~r~  406 (524)
                      .|-   |+-.|.+...-+.|+-.
T Consensus       146 ~ClvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  146 QCLVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             HHHHHhhhhhhhhhhhhhhHHHH
Confidence            996   99999999999999765

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=84.29  E-value=0.73  Score=47.28  Aligned_cols=23  Identities=35%  Similarity=0.613  Sum_probs=21.4

Q ss_pred             ceecCCCCCccCChHHHHHHHhh
Q 009831          270 THFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      .+.|-.|.|.|+.+..|+.|||.
T Consensus       195 r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHh
Confidence            48999999999999999999985

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=83.73  E-value=0.62  Score=45.46  Aligned_cols=48  Identities=25%  Similarity=0.500  Sum_probs=36.6

Q ss_pred             CccccCCCCCccccChhhhhhhhcccCCCceecc-CCCccCChhHHHHH-HHhhc
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGH-IALFQ  408 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~L~~H-~r~Ht  408 (524)
                      |+| |-+|+ +.|.....|.+|++   -|-|+|. |.|...+--.|..| |.+|.
T Consensus        10 kpw-cwycn-refddekiliqhqk---akhfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   10 KPW-CWYCN-REFDDEKILIQHQK---AKHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             Cce-eeecc-cccchhhhhhhhhh---hccceeeeehhhhccCCCceeehhhhhh
Confidence            443 88899 99999999998887   1238999 98888777778777 55553

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.72  E-value=0.52  Score=48.32  Aligned_cols=20  Identities=40%  Similarity=0.682  Sum_probs=14.6

Q ss_pred             ecc-CCCccCChhHHHHHHHh
Q 009831          387 LCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       387 ~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      .|. |.+.|..-+.|.+|+|.
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~  242 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRL  242 (493)
T ss_pred             hhhhccceecChHHHHHHHHh
Confidence            477 77777777777777774

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=81.99  E-value=0.43  Score=46.55  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=30.5

Q ss_pred             cCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhh
Q 009831          321 SCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHE  378 (524)
Q Consensus       321 ~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~  378 (524)
                      .|=+|.          +.|-....|..|.+.    |-|+|.+|. |..-+--.|..|-
T Consensus        12 wcwycn----------refddekiliqhqka----khfkchich-kkl~sgpglsihc   54 (341)
T KOG2893|consen   12 WCWYCN----------REFDDEKILIQHQKA----KHFKCHICH-KKLFSGPGLSIHC   54 (341)
T ss_pred             eeeecc----------cccchhhhhhhhhhh----ccceeeeeh-hhhccCCCceeeh
Confidence            477888          777777777777654    458899998 6665666677774

>smart00451 ZnF_U1 U1-like zinc finger

Probab=80.34  E-value=0.95  Score=30.40  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=13.9

Q ss_pred             ccccCCCCCccccChhhhhhhhc
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK  379 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r  379 (524)
                      +|.|++|+ +.|.....+..|++
T Consensus         3 ~~~C~~C~-~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCN-VTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccC-CccCCHHHHHHHHC
Confidence            35566666 66666666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.10  E-value=2.8  Score=36.56  Aligned_cols=79  Identities=11%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             CCCccccCCCCCccccChhhhhhhhccc------CCCc-------eecc-CCCccCChhHHHHHHHhhcC-CCCCCCCCC
Q 009831          354 CDKSYVCSRCNTKKFSVIADLKTHEKHC------GKDK-------WLCS-CGTTFSRKDKLFGHIALFQG-HTPAIPLDE  418 (524)
Q Consensus       354 ~~Kpy~C~~C~~K~F~~~s~L~~H~rHt------gekp-------y~C~-Cgk~F~~ks~L~~H~r~Htg-~kp~k~~~C  418 (524)
                      ++-|-.|+.|+ -......+|.+-..|.      .|-+       ..|- |.+.|.......      .| ......|+|
T Consensus        12 C~LP~~CpiCg-LtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~------~~~~~~~~~y~C   84 (112)
T TIGR00622        12 CELPVECPICG-LTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP------FDELKDSHRYVC   84 (112)
T ss_pred             cCCCCcCCcCC-CEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccc------ccccccccceeC
Confidence            66788999999 8888888887643331      1222       2399 999998654221      11 122457899


Q ss_pred             CCCCCCCCCCccccccccccC
Q 009831          419 TIKGLAGPSDRREGNEATSKI  439 (524)
Q Consensus       419 ~~C~~~f~~~~~l~~H~~~~~  439 (524)
                      +.|...|--.=..-.|..-|.
T Consensus        85 ~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        85 AVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CCCCCccccccchhhhhhccC
Confidence            999999977766666655543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	524
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		9e-07

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 273 CTICGKGFKRDANLRMHMRGHGDE--YKTPAA---------LAKPHKESSSEPMLIKRYS 321
           C  CGK F R  +L  H R H  E  YK P           L +  +  + E    K Y 
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE----KPYK 79
Query: 322 CPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK- 379
           CP  G       K F     +      ++RTH  +K Y C  C  K FS +A L+ H++ 
Sbjct: 80  CPECG-------KSFSQRANLRA----HQRTHTGEKPYACPECG-KSFSQLAHLRAHQRT 127
Query: 380 HCGKDKWLC-SCGTTFSRKDKLFGHIALFQGHTP 412
           H G+  + C  CG +FSR+D L  H     G  P
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	524
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	9e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	7e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	8e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	8e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 36/133 (27%)

Query: 276 CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKK 335
           C K + + ++L+MH R H  E        KP             Y C +  C+     ++
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGE--------KP-------------YQCDFKDCE-----RR 47

Query: 336 FQPLKTILCVKNHYKRTH-CDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS---C 390
           F     +   K H +R H   K + C  C  +KFS    LKTH + H G+  + C    C
Sbjct: 48  FSRSDQL---KRH-QRRHTGVKPFQCKTCQ-RKFSRSDHLKTHTRTHTGEKPFSCRWPSC 102

Query: 391 GTTFSRKDKLFGH 403
              F+R D+L  H
Sbjct: 103 QKKFARSDELVRH 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 62/530 (11%), Positives = 150/530 (28%), Gaps = 143/530 (26%)

Query: 3   LKEGLRAETWAKSSLAENEMSKR--ISSNNPCFTDFNSQQYQQKWE--------DP---- 48
           L   ++ E    S +    + +R  + ++N  F  +N  + Q   +         P    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 49  ----------SIL------DYDIRINPAFQEF-----NQPPQNQSSLPCDPTNQIKNPFQ 87
                     + +       Y ++    F+ F     N          C+    +    +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN----------CNSPETV---LE 200

Query: 88  MNENLQTNKMQDWDPKAMLNNLSFLEQKIHELQD-LVHLIVGRRSQ----ILGRPDEL-- 140
           M + L      +W  ++  ++ S ++ +IH +Q  L  L+  +  +    +L     +  
Sbjct: 201 MLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQN 255

Query: 141 --VAQQ-----QQLITADLTSIIVQLISTAGSLLPSMKHTLSAATP--SMGQLGQFGGVP 191
                      + L+T     +   L +   + + S+ H     TP      L ++    
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 192 F---PPGAGLSDSIQVQNSCAKKVSNQSNPIDLVGNSGTQQNHAVEEHDLKDEDDAD--- 245
               P    L+ + +  +  A+ + +     D   +    +   + E  L   + A+   
Sbjct: 315 PQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 246 ---------DGEQLPPGSYEIL--QLEKEEILAPHTHFC--TICGKGFKRDANLRMHMRG 292
                        +P     ++   + K +++         ++  K  K    + +    
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSI- 431

Query: 293 HGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNK-----D---------H----- 333
           + +           H+       ++  Y+ P      +      D         H     
Sbjct: 432 YLELKVKLENEYALHR------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 334 --KKFQPLKTILC----VKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKH-CGKD-- 384
             ++    + +      ++   +      +   S  NT     +  LK ++ + C  D  
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-----LQQLKFYKPYICDNDPK 540

Query: 385 ---------KWLCSCGTTFSR-KDKLFGHIALFQGHTPAIPLDETIKGLA 424
                     +L          K      IAL          +E  K + 
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF--EEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 79/600 (13%), Positives = 162/600 (27%), Gaps = 185/600 (30%)

Query: 1   MDLKEGLRAETWAKSSLAENEMSKRISSNNP---------CFTDFNSQQYQQKWEDPSIL 51
            D K+    +   KS L++ E+   I S +                 +  Q+  E+   +
Sbjct: 33  FDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 52  DYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNENLQTNKMQDWDPKAMLNNLSF 111
           +Y   ++P   E  QP     S+      + ++    N+N    K      +  L     
Sbjct: 90  NYKFLMSPIKTEQRQP-----SMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLK---- 139

Query: 112 LEQKIHELQDLVHLIV-GRRSQILGRPDELVAQQQQLITADLTSIIVQLISTAGSLLPSM 170
           L Q + EL+   ++++ G    +LG                           +G      
Sbjct: 140 LRQALLELRPAKNVLIDG----VLG---------------------------SG------ 162

Query: 171 KHTLSAAT-PSMGQLGQFGGVPFPPGAGLSDS-----IQVQNSCAKKVSNQSNPIDLVGN 224
           K  ++     S     +     F       +S       +Q    +   N ++  D    
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD---- 218

Query: 225 SGTQQNHAVEEHDLKDEDDADDGEQLPPGSYEIL-QLEKEEILAPHTHFC-----TICGK 278
                N  +  H ++ E       +       +L  ++  +        C     T    
Sbjct: 219 --HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---- 272

Query: 279 GFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSC-----PYAGCKRNKDH 333
              R   +   +      + +    +        + +L+K   C     P      N   
Sbjct: 273 ---RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--- 326

Query: 334 KKFQPLKTILCVK---------NHYKRTHCDK-SYVCSRCNTKKFSVIADLKTHEKHCGK 383
               P +  +  +         +++K  +CDK + +           +  L+  E     
Sbjct: 327 ----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------LNVLEPAE----- 370

Query: 384 DKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSK----- 438
                       R  K+F  +++F      IP    +  +     + +     +K     
Sbjct: 371 -----------YR--KMFDRLSVFPPSAH-IPT-ILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 439 -IGSTNFNFGSSVPNGTGVSDMDAKGNVDD------------------PTNYFSPLNFDT 479
            +         S+P+      ++ K  +++                   ++   P   D 
Sbjct: 416 LVEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 480 --CNFDGFH-----------EFPRPPFDDSENAFSFL---IPGSCNYIQKTGGETSLNTL 523
              +  G H            F     D     F FL   I         +G    LNTL
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLD-----FRFLEQKIRHDSTAWNASGS--ILNTL 524

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 33/108 (30%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C IC + F R  +L  H+R H  E        KP             ++C   G      
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGE--------KP-------------FACDICG------ 38

Query: 333 HKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKH 380
            +KF         K H +        +  +   +  S    L+     
Sbjct: 39  -RKFARSDER---KRH-RDIQHILPILEDKVE-ELLSKNYHLENEVAR 80

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 16/74 (21%)

Query: 346 KNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTH-----EK--HCGKDKWLCSCGTTFSRK 397
             H  RTH  +K + C  C  +KF+   + K H            K           S+ 
Sbjct: 20  TTH-IRTHTGEKPFACDICG-RKFARSDERKRHRDIQHILPILEDK------VEELLSKN 71

Query: 398 DKLFGHIALFQGHT 411
             L   +A  +   
Sbjct: 72  YHLENEVARLKKLV 85

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 39/140 (27%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C+   + FK    L +HMR H  E        KPHK             C + GC     
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTGE--------KPHK-------------CTFEGC----- 75

Query: 333 HKKFQPLKTILCVKNHYKRTH-CDKSYVC--SRCNTKKFSVIADLKTHEK--HCGKDKWL 387
            K +  L+ +   K H  R+H  +K Y+C    C+ K FS  +D   H+   H  +  ++
Sbjct: 76  RKSYSRLENL---KTH-LRSHTGEKPYMCEHEGCS-KAFSNASDRAKHQNRTHSNEKPYV 130

Query: 388 CS---CGTTFSRKDKLFGHI 404
           C    C   ++    L  H+
Sbjct: 131 CKLPGCTKRYTDPSSLRKHV 150

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 36/124 (29%), Positives = 46/124 (37%), Gaps = 40/124 (32%)

Query: 269 HT----HFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSC 322
           HT    H CT   C K + R  NL+ H+R H  E        KP             Y C
Sbjct: 62  HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--------KP-------------YMC 100

Query: 323 PYAGCKRNKDHKKFQPLKTILCVKNHYKRTH-CDKSYVCSR--CNTKKFSVIADLKTHEK 379
            + GC      K F           H  RTH  +K YVC    C  K+++  + L+ H K
Sbjct: 101 EHEGC-----SKAFSNASDR---AKHQNRTHSNEKPYVCKLPGCT-KRYTDPSSLRKHVK 151

Query: 380 -HCG 382
              G
Sbjct: 152 TVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 38/141 (26%)

Query: 273 CTICGKGFKRDANLRMHM---RGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKR 329
              C + F     L  H+     HG+         K              + C + GC R
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGER--------KE-------------FVCHWGGCSR 44

Query: 330 NKDHKKFQPLKTILCVKNHYKRTHC-DKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDK 385
               + F   K    +  H  R H  +K + C+   C  K +S + +LKTH + H G+  
Sbjct: 45  E--LRPF---KAQYMLVVH-MRRHTGEKPHKCTFEGCR-KSYSRLENLKTHLRSHTGEKP 97

Query: 386 WLC---SCGTTFSRKDKLFGH 403
           ++C    C   FS       H
Sbjct: 98  YMCEHEGCSKAFSNASDRAKH 118

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 40/116 (34%)

Query: 270 THFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGC 327
            H+C    C K + + ++L+ H+R H  E        KP             Y C + GC
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTHTGE--------KP-------------YKCTWEGC 53

Query: 328 KR---NKDHKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK 379
                  D      L        HY R H   K + C  CN + FS    L  H K
Sbjct: 54  DWRFARSDE-----LTR------HY-RKHTGAKPFQCGVCN-RSFSRSDHLALHMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 309 ESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHC-DKSYVCSR--CNT 365
            S  +    + + C Y GC   K + K   LK       H  RTH  +K Y C+   C+ 
Sbjct: 5   SSGPDLEKRRIHYCDYPGC--TKVYTKSSHLKA------H-LRTHTGEKPYKCTWEGCD- 54

Query: 366 KKFSVIADLKTHE-KHCGKDKWLCS-CGTTFSRKDKLFGHI 404
            +F+   +L  H  KH G   + C  C  +FSR D L  H+
Sbjct: 55  WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 41/144 (28%)

Query: 268 PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGC 327
                   C K F+ ++ +R H+  HG          + H              C   G 
Sbjct: 5   TIACPHKGCTKMFRDNSAMRKHLHTHGP---------RVHV-------------CAECG- 41

Query: 328 KRNKDHKKFQPLKTILCVKNHYKRTH-CDKSYVCSR--CNTKKFSVIADLKTHEK-HCGK 383
                 K F     +   K H +  H  +K + C+   C  K+FS+  +L+TH + H G 
Sbjct: 42  ------KAFVESSKL---KRH-QLVHTGEKPFQCTFEGCG-KRFSLDFNLRTHVRIHTGD 90

Query: 384 DKWLCS---CGTTFSRKDKLFGHI 404
             ++C    C   F++   L  HI
Sbjct: 91  RPYVCPFDGCNKKFAQSTNLKSHI 114

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 38/116 (32%)

Query: 268 PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGC 327
            HT     CGK + + ++L+ H+R H  E        KP             Y C + GC
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTHTGE--------KP-------------YHCDWDGC 43

Query: 328 KRNKDHKKFQ---PLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK 379
                  KF     L        HY R H   + + C +C+ + FS    L  H K
Sbjct: 44  -----GWKFARSDELTR------HY-RKHTGHRPFQCQKCD-RAFSRSDHLALHMK 86

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 33/134 (24%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C  C K F     L++H R H  E        KP             + CP  G      
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGE--------KP-------------FECPKCG------ 42

Query: 333 HKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS- 389
            K +   K  L         +  ++ + CS C  + F    +L+ H   H G+  + CS 
Sbjct: 43  -KCYF-RKENLLEHEARNCMNRSEQVFTCSVCQ-ETFRRRMELRLHMVSHTGEMPYKCSS 99

Query: 390 CGTTFSRKDKLFGH 403
           C   F +K  L  H
Sbjct: 100 CSQQFMQKKDLQSH 113

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 46/120 (38%)

Query: 271 HFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCK 328
           + C    CGK FK+   L++H   H  +         P             Y CP+ GC 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQ--------LP-------------YECPHEGC- 39

Query: 329 RNKDHKKF-QP--LKTILCVKNHYKRTH----CDKSYVCSRCNTKKFSVIADLKTHEKHC 381
                K+F  P  LK       H ++ H    C K   CS    K ++       H   C
Sbjct: 40  ----DKRFSLPSRLKR------H-EKVHAGYPCKKDDSCSFV-GKTWT---LYLKHVAEC 84

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 31/138 (22%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
              C + F     L  H+               P + +         + C +  C R   
Sbjct: 28  KKSCDRTFSTMHELVTHVTMEHVG--------GPEQNN---------HVCYWEECPRE-- 68

Query: 333 HKKFQPLKTILCVKNHYKRTHC-DKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLC 388
            K F   K    + NH  R H  +K + C    C  K F+   +LK H++ H G+  + C
Sbjct: 69  GKSF---KAKYKLVNH-IRVHTGEKPFPCPFPGCG-KIFARSENLKIHKRTHTGEKPFKC 123

Query: 389 S---CGTTFSRKDKLFGH 403
               C   F+       H
Sbjct: 124 EFEGCDRRFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 17/86 (19%)

Query: 331 KDHKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTH---------EKH 380
                 QP+K  L      K       S     C+ + FS + +L TH         E++
Sbjct: 2   SSGSSGQPIKQEL----SCKWIDEAQLSRPKKSCD-RTFSTMHELVTHVTMEHVGGPEQN 56

Query: 381 CGKDKWL-CS-CGTTFSRKDKLFGHI 404
                W  C   G +F  K KL  HI
Sbjct: 57  NHVCYWEECPREGKSFKAKYKLVNHI 82

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 30/101 (29%)

Query: 268 PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGC 327
                C ICG   ++ A+L  H R H          A               + C + G 
Sbjct: 7   GLQ--CEICGFTCRQKASLNWHQRKH-----AETVAALR-------------FPCEFCG- 45

Query: 328 KRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKF 368
                 K+F+   +   V  H  ++H          +    
Sbjct: 46  ------KRFEKPDS---VAAHRSKSHPALLLAPQESSGPSS 77

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 36/134 (26%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C  CGK F R  +L  H R H  E        KP             Y CP  G      
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGE--------KP-------------YKCPECG------ 56

Query: 333 HKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS- 389
            K F   K  L    H +RTH  +K Y C  C  K FS  A+L+ H++ H G+  + C  
Sbjct: 57  -KSFS-DKKDLTR--H-QRTHTGEKPYKCPECG-KSFSQRANLRAHQRTHTGEKPYACPE 110

Query: 390 CGTTFSRKDKLFGH 403
           CG +FS+   L  H
Sbjct: 111 CGKSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 44/134 (32%), Positives = 56/134 (41%), Gaps = 36/134 (26%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C  CGK F    +L  H R H  E        KP             Y CP  G      
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHTGE--------KP-------------YKCPECG------ 84

Query: 333 HKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS- 389
            K F   +  L    H +RTH  +K Y C  C  K FS +A L+ H++ H G+  + C  
Sbjct: 85  -KSFS-QRANLRA--H-QRTHTGEKPYACPECG-KSFSQLAHLRAHQRTHTGEKPYKCPE 138

Query: 390 CGTTFSRKDKLFGH 403
           CG +FSR+D L  H
Sbjct: 139 CGKSFSREDNLHTH 152

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 47/134 (35%), Positives = 58/134 (43%), Gaps = 36/134 (26%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C  CGK F + ANLR H R H  E        KP             Y+CP  G      
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGE--------KP-------------YACPECG------ 112

Query: 333 HKKFQPLKTILCVKNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS- 389
            K F      L    H +RTH  +K Y C  C  K FS   +L TH++ H G+  + C  
Sbjct: 113 -KSFS-QLAHLRA--H-QRTHTGEKPYKCPECG-KSFSREDNLHTHQRTHTGEKPYKCPE 166

Query: 390 CGTTFSRKDKLFGH 403
           CG +FSR+D L  H
Sbjct: 167 CGKSFSRRDALNVH 180

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 346 KNHYKRTHC-DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDK--WLCS-CGTTFSRKDKL 400
            +   RTH  +K Y C  C+  +F+    +K H      ++   + C  C T  +RK  L
Sbjct: 4   GSS-GRTHSGEKPYECYICH-ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 401 FGHI 404
             H+
Sbjct: 62  GVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 6/36 (16%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHK 308
           C IC   F +   ++MH+     E            
Sbjct: 18  CYICHARFTQSGTMKMHILQKHTENV------AKFH 47

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.8 bits (94), Expect = 7e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 350 KRTHC-DKSYVCSRCNTKKFSVIADLKTHE---KHCGKDKWLCS-CGTTFSRKDKLFGHI 404
           + T   + +Y C  C+ + ++ I++   H           + C  C   F+RKD +  H+
Sbjct: 2   EFTKEGEHTYRCKVCS-RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 42/138 (30%)

Query: 276 CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKK 335
           CG  + ++  L+ H+  H  E        KP             + C   GC+     K 
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGE--------KP-------------FPCKEEGCE-----KG 53

Query: 336 FQPLKTILCVKNHYKRTHC-DKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWL---C 388
           F    ++  +  H   TH  +K++ C    C+  +F+  A++K H        K     C
Sbjct: 54  F---TSLHHLTRH-SLTHTGEKNFTCDSDGCD-LRFTTKANMKKHFNRFHN-IKICVYVC 107

Query: 389 S---CGTTFSRKDKLFGH 403
               CG  F + ++L  H
Sbjct: 108 HFENCGKAFKKHNQLKVH 125

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 32/137 (23%), Positives = 41/137 (29%), Gaps = 40/137 (29%)

Query: 276 CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKK 335
           C KGF    +L  H   H  E        K              ++C   GC       +
Sbjct: 50  CEKGFTSLHHLTRHSLTHTGE--------KN-------------FTCDSDGCD-----LR 83

Query: 336 FQPLKTILCVKNHYKRTHC---DKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLCS 389
           F   K  +  K H            YVC    C  K F     LK H+  H  +  + C 
Sbjct: 84  FT-TKANM--KKH-FNRFHNIKICVYVCHFENCG-KAFKKHNQLKVHQFSHTQQLPYECP 138

Query: 390 ---CGTTFSRKDKLFGH 403
              C   FS   +L  H
Sbjct: 139 HEGCDKRFSLPSRLKRH 155

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 321 SCPYAGCKRNKDHKKFQP------LKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADL 374
           S   +G    ++ + +Q       L ++L   +H +   C  + VC  C+  +F      
Sbjct: 2   SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERL--CRNAAVCPYCS-LRFFSPELK 58

Query: 375 KTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKG 422
           + HE  C   K  C  C  TF     ++ H           P      G
Sbjct: 59  QEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 38/115 (33%)

Query: 273 CTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKD 332
           C ICGK F+   +L  H   H  E        KP             YSCP  G      
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGE--------KP-------------YSCPVCG------ 42

Query: 333 HKKFQPLKTILCVKNHYKRTH---CDKSYVCSRCNTKKFSVIADLKTHEK--HCG 382
             +F+  K  +   +++ R+H     K Y+C  C  K FS    L  H K  H G
Sbjct: 43  -LRFK-RKDRM---SYHVRSHDGSVGKPYICQSCG-KGFSRPDHLNGHIKQVHSG 91

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 96

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 349 YKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIALF 407
           Y       S  C  C       I  LK H ++C ++ + C  CG        +  H+   
Sbjct: 26  YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85

Query: 408 QGHTPAIP 415
               P+ P
Sbjct: 86  HNSLPSGP 93

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 273 CTICGKGFKRDANLRMHMRGH 293
           C ICG  F+    L+ H+R H
Sbjct: 14  CEICGTRFRHLQTLKSHLRIH 34

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 40/125 (32%)

Query: 260 LEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKR 319
           +E+     P+      C + F +  +L  H+R H  +        KP             
Sbjct: 1   MER-----PYACPVESCDRRFSQSGSLTRHIRIHTGQ--------KP------------- 34

Query: 320 YSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTH-CDKSYVCSRCNTKKFSVIADLKTHE 378
           + C           + F     +     H  RTH  +K + C  C  +KF+   + K H 
Sbjct: 35  FQCRICM-------RNFSRSDHL---TTH-IRTHTGEKPFACDICG-RKFARSDERKRHT 82

Query: 379 K-HCG 382
           K H  
Sbjct: 83  KIHLR 87

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 271 HFCTICGKGFKRDANLRMHMRGHGDE 296
             C ICGK F+   +L  H   H  E
Sbjct: 13  VACEICGKIFRDVYHLNRHKLSHSGE 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	524
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.73
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.72
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.68
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.68
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.67
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.66
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.65
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.61
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.59
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.59
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.55
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.53
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.52
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.5
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.5
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.47
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.46
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.46
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.44
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.43
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.43
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.41
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.41
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.4
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.39
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.38
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.37
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.34
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.34
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.34
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.33
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.33
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.31
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.3
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.3
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.29
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.27
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.26
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.24
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.2
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.18
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.18
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.14
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.13
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.11
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.06
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.06
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.06
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.05
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.03
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.03
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.03
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.03
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.02
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.02
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.02
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.01
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.0
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.95
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.95
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.95
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.94
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.94
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.93
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.93
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.93
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.93
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.92
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.91
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.9
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.9
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.9
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.9
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.89
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.89
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.89
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.89
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.88
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.88
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.88
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.87
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.87
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.85
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.82
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.8
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.77
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.77
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.77
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.76
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.76
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.74
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.73
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.72
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.7
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.69
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.68
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.64
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.63
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.62
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.6
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.54
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.51
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.45
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.44
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.42
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.4
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.4
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.35
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.34
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.32
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.26
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.24
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.24
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.23
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.16
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.16
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.14
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.13
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.12
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.09
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.08
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.08
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.08
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.07
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.06
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.05
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.04
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.04
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.02
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.02
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.02
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.02
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.0
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.99
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.25
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.99
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.21
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.96
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.95
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.93
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.91
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.91
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.9
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.9
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.88
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.85
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.82
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.82
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.81
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.01
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.01
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.99
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.99
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.78
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.72
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.64
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.23
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.03
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.97
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.87
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.74
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.91
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.73
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.07
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.96
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.56
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	91.44
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	82.53
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	80.48

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=1.4e-30  Score=245.63  Aligned_cols=173  Identities=25%  Similarity=0.461  Sum_probs=139.5

Q ss_pred             ccCCCCCCCcccCCCCCCCChhhhhhhhhhccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCC
Q 009831          235 EHDLKDEDDADDGEQLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEP  314 (524)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h  314 (524)
                      ..+++...|+.|++.|.....+..++  ..+.++++|.|++|++.|.....|..|+++|.++                  
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~~H~--~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------   75 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLAEHQ--RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE------------------   75 (190)
T ss_dssp             ---------------CCSSHHHHHGG--GCC---CCEECTTTCCEESSHHHHHHHHHHHHCC------------------
T ss_pred             cCCCCCCcCCCCccccCCHHHHHHHH--HHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCC------------------
Confidence            34456788999999998766555554  4566889999999999999999999999999887                  


Q ss_pred             CccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCC
Q 009831          315 MLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGT  392 (524)
Q Consensus       315 ~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk  392 (524)
                         ++|.|++|+          +.|.....|..|++.|+++++|.|.+|+ +.|.....|..|++ |+++++|.|. |++
T Consensus        76 ---~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~  141 (190)
T 2i13_A           76 ---KPYKCPECG----------KSFSQRANLRAHQRTHTGEKPYACPECG-KSFSQLAHLRAHQRTHTGEKPYKCPECGK  141 (190)
T ss_dssp             ---CCEECTTTC----------CEESCHHHHHHHHHHHHTCCCEECTTTC-CEESSHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             ---CCccCcccC----------CccCCHHHHHHHHHhcCCCCCCcCCCCC-CccCCHHHHHHHHHHhCCCCCeECCCCCc
Confidence               999999999          9999999999999999999999999999 99999999999999 9999999999 999


Q ss_pred             ccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCC
Q 009831          393 TFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNF  444 (524)
Q Consensus       393 ~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~gs~~~  444 (524)
                      .|.++..|..|+++|++   .++|.|++|++.|.....|..|++.|+|.++|
T Consensus       142 ~f~~~~~L~~H~~~H~~---~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          142 SFSREDNLHTHQRTHTG---EKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             EESCHHHHHHHHHHHHC---CCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             ccCCHHHHHHHHHhcCC---CCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            99999999999999998   56788999999999999999999999998764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=8.8e-28  Score=226.34  Aligned_cols=149  Identities=27%  Similarity=0.519  Sum_probs=122.5

Q ss_pred             hhhccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccch
Q 009831          262 KEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKT  341 (524)
Q Consensus       262 ~~~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~  341 (524)
                      ...+.++++|.|++|++.|.....|..|+++|.++                     ++|.|++|+          +.|..
T Consensus        13 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~   61 (190)
T 2i13_A           13 AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE---------------------KPYKCPECG----------KSFSD   61 (190)
T ss_dssp             ------------------CCSSHHHHHGGGCC------------------------CCEECTTTC----------CEESS
T ss_pred             hhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCC---------------------CCccCCCcC----------chhCC
Confidence            34456789999999999999999999999999887                     999999999          99999


Q ss_pred             hhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          342 ILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       342 ~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      ...|..|++.|+++++|.|.+|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|++   .++|.|+
T Consensus        62 ~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~  137 (190)
T 2i13_A           62 KKDLTRHQRTHTGEKPYKCPECG-KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG---EKPYKCP  137 (190)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTC-CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHC---CCCEECT
T ss_pred             HHHHHHHHHhcCCCCCccCcccC-CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCC---CCCeECC
Confidence            99999999999999999999999 99999999999999 9999999999 99999999999999999998   5678899


Q ss_pred             CCCCCCCCCccccccccccCCCCCCC
Q 009831          420 IKGLAGPSDRREGNEATSKIGSTNFN  445 (524)
Q Consensus       420 ~C~~~f~~~~~l~~H~~~~~gs~~~s  445 (524)
                      +|++.|.....|..|++.|.+..+|.
T Consensus       138 ~C~~~f~~~~~L~~H~~~H~~~~~~~  163 (190)
T 2i13_A          138 ECGKSFSREDNLHTHQRTHTGEKPYK  163 (190)
T ss_dssp             TTCCEESCHHHHHHHHHHHHCCCCEE
T ss_pred             CCCcccCCHHHHHHHHHhcCCCCCeE
Confidence            99999999999999999999877653

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=4.3e-26  Score=214.74  Aligned_cols=164  Identities=23%  Similarity=0.268  Sum_probs=142.5

Q ss_pred             CCCCCC--cccCCCCCCCChhhhhhhhhhccCCcceec--CCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCC
Q 009831          238 LKDEDD--ADDGEQLPPGSYEILQLEKEEILAPHTHFC--TICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSE  313 (524)
Q Consensus       238 ~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~k~~~C--~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~  313 (524)
                      .+...|  +.|++.|.....+..|+.  .|.++++|.|  .+|++.|.....|..|+++|.++                 
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~--~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------   70 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLC--KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-----------------   70 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHH--HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTC-----------------
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHH--hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCC-----------------
Confidence            455677  689998876655555554  4568899999  88999999999999999999887                 


Q ss_pred             CCccccccCC--CCCcccCcCcCCccccchhhccccce-eee-cCCCcccc--CCCCCccccChhhhhhhhc-ccCCCce
Q 009831          314 PMLIKRYSCP--YAGCKRNKDHKKFQPLKTILCVKNHY-KRT-HCDKSYVC--SRCNTKKFSVIADLKTHEK-HCGKDKW  386 (524)
Q Consensus       314 h~~ekpy~C~--~Cgc~~~~~~~~~k~f~~~~~L~~H~-~~h-~~~Kpy~C--~~C~~K~F~~~s~L~~H~r-Htgekpy  386 (524)
                          ++|.|+  .|+          +.|.....|..|+ +.| ..+++|.|  ..|+ +.|.....|+.|++ |++++||
T Consensus        71 ----~~~~C~~~~C~----------~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~~~~  135 (190)
T 1tf6_A           71 ----KNFTCDSDGCD----------LRFTTKANMKKHFNRFHNIKICVYVCHFENCG-KAFKKHNQLKVHQFSHTQQLPY  135 (190)
T ss_dssp             ----CCEECCSSSCC----------CEESCHHHHHHHHHTTSSTTTSCCEECSSSSC-EECSSHHHHHHHHGGGSSSCSS
T ss_pred             ----CceeCCCCCCC----------CccCCHHHHHHHHHHhcCCCcceeeCCCCCCc-cccCCHHHHHHHHHHhCCCCCc
Confidence                999999  899          9999999999999 555 36789999  8999 99999999999999 9999999


Q ss_pred             ec--c-CCCccCChhHHHHHHHhhcCCCCCCCCCCCC---CCCCCCCCccccccccccCCC
Q 009831          387 LC--S-CGTTFSRKDKLFGHIALFQGHTPAIPLDETI---KGLAGPSDRREGNEATSKIGS  441 (524)
Q Consensus       387 ~C--~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~---C~~~f~~~~~l~~H~~~~~gs  441 (524)
                      .|  . |+++|.++..|..|+++|+|      |.|.+   |++.|.....|..|++.|+++
T Consensus       136 ~C~~~~C~k~F~~~~~L~~H~~~H~~------~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          136 ECPHEGCDKRFSLPSRLKRHEKVHAG------YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             BCCSSSCCCBCSSHHHHHHHHTSSCS------CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             cCCCCCCCchhcCHHHHHHHHHHhCC------CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            99  5 99999999999999999988      55666   999999999999999998863

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=3.5e-25  Score=201.06  Aligned_cols=143  Identities=23%  Similarity=0.464  Sum_probs=127.7

Q ss_pred             CcceecCCCCCccCChHHHHHHHh---hhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhc
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMR---GHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILC  344 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r---~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~  344 (524)
                      |.+|+|+.|++.|.+...|..|++   +|.++                     ++|.|++|+|..-     .+.|.....
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~---------------------~~~~C~~c~C~~c-----~~~f~~~~~   54 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGER---------------------KEFVCHWGGCSRE-----LRPFKAQYM   54 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCS---------------------SCCCCCBTTCTTT-----TCCCSSHHH
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCC---------------------cceeCCCCCccch-----hhhhhhHHH
Confidence            357999999999999999999998   45554                     9999987665311     167888999


Q ss_pred             cccceeeecCCCccccCC--CCCccccChhhhhhhhc-ccCCCceecc---CCCccCChhHHHHHH-HhhcCCCCCCCCC
Q 009831          345 VKNHYKRTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLCS---CGTTFSRKDKLFGHI-ALFQGHTPAIPLD  417 (524)
Q Consensus       345 L~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgekpy~C~---Cgk~F~~ks~L~~H~-r~Htg~kp~k~~~  417 (524)
                      |..|++.|+++++|.|.+  |+ +.|.....|..|++ |+++++|.|.   |++.|.++..|..|+ ++|++   .++|.
T Consensus        55 l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~---~~~~~  130 (155)
T 2gli_A           55 LVVHMRRHTGEKPHKCTFEGCR-KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN---EKPYV  130 (155)
T ss_dssp             HHHHTHHHHCCCCCCCCSTTCC-CCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS---CCCEE
T ss_pred             HHHHHHhcCCCCCccCCCCCCC-CcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC---CCCee
Confidence            999999999999999985  99 99999999999999 9999999998   999999999999999 88988   56788


Q ss_pred             CCC--CCCCCCCCccccccccccCC
Q 009831          418 ETI--KGLAGPSDRREGNEATSKIG  440 (524)
Q Consensus       418 C~~--C~~~f~~~~~l~~H~~~~~g  440 (524)
                      |++  |++.|.....|..|++.|+|
T Consensus       131 C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          131 CKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCCccccCCHHHHHHHHHhhcC
Confidence            988  99999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=7.9e-25  Score=206.07  Aligned_cols=139  Identities=19%  Similarity=0.415  Sum_probs=130.6

Q ss_pred             CCcceec--CCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccC--CCCCcccCcCcCCccccchh
Q 009831          267 APHTHFC--TICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSC--PYAGCKRNKDHKKFQPLKTI  342 (524)
Q Consensus       267 ~~k~~~C--~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C--~~Cgc~~~~~~~~~k~f~~~  342 (524)
                      ..++|.|  +.|++.|.....|..|+++|.++                     ++|.|  ++|+          +.|...
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~---------------------~~~~C~~~~C~----------~~f~~~   57 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGE---------------------KPFPCKEEGCE----------KGFTSL   57 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCC---------------------CSSCCSSTTCC----------CCCSSH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCC---------------------CCccCCCCCCC----------hhhCCH
Confidence            5688999  68999999999999999999988                     99999  8899          999999


Q ss_pred             hccccceeeecCCCccccC--CCCCccccChhhhhhhh-c-c-cCCCceec--c-CCCccCChhHHHHHHHhhcCCCCCC
Q 009831          343 LCVKNHYKRTHCDKSYVCS--RCNTKKFSVIADLKTHE-K-H-CGKDKWLC--S-CGTTFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       343 ~~L~~H~~~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~-r-H-tgekpy~C--~-Cgk~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      ..|..|++.|+++++|.|.  .|+ +.|.....|..|+ + | .++++|.|  . |++.|.+...|..|+++|++   .+
T Consensus        58 ~~l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~---~~  133 (190)
T 1tf6_A           58 HHLTRHSLTHTGEKNFTCDSDGCD-LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ---QL  133 (190)
T ss_dssp             HHHHHHHTTTTTCCCEECCSSSCC-CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSS---SC
T ss_pred             HHHHHHHHHccCCCceeCCCCCCC-CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCC---CC
Confidence            9999999999999999999  899 9999999999999 5 7 58899999  8 99999999999999999998   56


Q ss_pred             CCCCCC--CCCCCCCCccccccccccCC
Q 009831          415 PLDETI--KGLAGPSDRREGNEATSKIG  440 (524)
Q Consensus       415 ~~~C~~--C~~~f~~~~~l~~H~~~~~g  440 (524)
                      +|.|++  |++.|.....|..|++.|++
T Consensus       134 ~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          134 PYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            788988  99999999999999999987

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=4.3e-24  Score=191.47  Aligned_cols=113  Identities=19%  Similarity=0.305  Sum_probs=102.7

Q ss_pred             CccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCC
Q 009831          305 KPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGK  383 (524)
Q Consensus       305 ~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htge  383 (524)
                      .|...|..+|.|+++|.|++||          +.|.....|..|+++|.+++||.|++|+ +.|.....|..|++ |+|+
T Consensus         8 ~h~~h~~~~h~Gek~y~C~~C~----------k~F~~~~~L~~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~   76 (133)
T 2lt7_A            8 KHDDHYELIVDGRVYYICIVCK----------RSYVCLTSLRRHFNIHSWEKKYPCRYCE-KVFPLAEYRTKHEIHHTGE   76 (133)
T ss_dssp             CCSSEEEEEETTEEEEEETTTC----------CEESCHHHHHHHHHHHHCCSCEECSSSS-CEESSHHHHHHHHHHHHTC
T ss_pred             HHHhhceeecCCCcCeECCCCC----------CCcCCHHHHHHHHHHcCCCCCeeCCccC-eecccccchhhhccccCCC
Confidence            3444444567888999999999          9999999999999999999999999999 99999999999999 9999


Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCCCC---CCCCCCCCCCCCCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHTPA---IPLDETIKGLAGPSD  428 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~---k~~~C~~C~~~f~~~  428 (524)
                      +||.|. ||++|.++..|..|+++|++++|.   ++|+|.+|++.|...
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             ccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            999999 999999999999999999998875   679999999888653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5.5e-23  Score=179.12  Aligned_cols=113  Identities=28%  Similarity=0.541  Sum_probs=105.1

Q ss_pred             cCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhcc
Q 009831          266 LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCV  345 (524)
Q Consensus       266 ~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L  345 (524)
                      .++++|.|++|++.|.....|..|+++|.++                     ++|.|++|+          +.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~~~~l   51 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---------------------KPFECPKCG----------KCYFRKENL   51 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSC---------------------CSCBCTTTC----------CBCSSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCC---------------------CCeECCCCC----------chhcCHHHH
Confidence            3678899999999999999999999999988                     999999999          999999999


Q ss_pred             ccceee---ecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHH-hhcCC
Q 009831          346 KNHYKR---THCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIA-LFQGH  410 (524)
Q Consensus       346 ~~H~~~---h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r-~Htg~  410 (524)
                      ..|++.   +..+++|.|.+|+ +.|.....|..|++ |++++||.|. |++.|.++..|..|++ .|.++
T Consensus        52 ~~H~~~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           52 LEHEARNCMNRSEQVFTCSVCQ-ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHHHHCCCCSCCCCEECSSSC-CEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHHhhhhcCCCCCCeECCCCC-CccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            999885   5678999999999 99999999999999 9999999999 9999999999999997 56654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=5.1e-23  Score=179.91  Aligned_cols=114  Identities=26%  Similarity=0.544  Sum_probs=100.9

Q ss_pred             CCcceecC--CCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhc
Q 009831          267 APHTHFCT--ICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILC  344 (524)
Q Consensus       267 ~~k~~~C~--~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~  344 (524)
                      .+++|.|+  .|++.|.....|..|+++| ++                     ++|.|++|+          +.|.....
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~---------------------~~~~C~~C~----------~~f~~~~~   49 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP---------------------RVHVCAECG----------KAFVESSK   49 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SC---------------------CCEECTTTC----------CEESSHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CC---------------------CCeECCCCC----------chhCCHHH
Confidence            45789999  8999999999999999999 65                     899999999          99999999


Q ss_pred             cccceeeecCCCccccCC--CCCccccChhhhhhhhc-ccCCCceec--c-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          345 VKNHYKRTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLC--S-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       345 L~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgekpy~C--~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |..|++.|+++++|.|.+  |+ +.|.....|..|++ |+++++|.|  . |++.|.++..|..|+++|++++++
T Consensus        50 l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           50 LKRHQLVHTGEKPFQCTFEGCG-KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHGGGTSCCCCEECCSTTCC-CEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHHHcCCCCCeeCCCCCCc-CccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            999999999999999986  99 99999999999999 999999999  6 999999999999999999997654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=4.6e-23  Score=178.50  Aligned_cols=110  Identities=31%  Similarity=0.619  Sum_probs=104.4

Q ss_pred             cCCcceecCC--CCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCC--CCCcccCcCcCCccccch
Q 009831          266 LAPHTHFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCP--YAGCKRNKDHKKFQPLKT  341 (524)
Q Consensus       266 ~~~k~~~C~~--CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~--~Cgc~~~~~~~~~k~f~~  341 (524)
                      .++++|.|.+  |++.|.....|..|+++|.++                     ++|.|+  .|+          +.|..
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~~~C~----------~~f~~   50 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE---------------------KPYQCDFKDCE----------RRFSR   50 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTT---------------------CCEECCSTTCC----------CEESS
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCC---------------------CCccCCCCCCc----------CccCC
Confidence            3678999997  999999999999999999887                     999999  699          99999


Q ss_pred             hhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec--c-CCCccCChhHHHHHHHhh
Q 009831          342 ILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC--S-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       342 ~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C--~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      ...|..|++.|+++++|.|.+|+ +.|.....|..|++ |+++++|.|  . |++.|.++..|.+|+++|
T Consensus        51 ~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           51 SDQLKRHQRRHTGVKPFQCKTCQ-RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTC-CEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCCCccCCccC-chhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999999999999 99999999999999 999999999  8 999999999999999987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=1.6e-22  Score=183.80  Aligned_cols=123  Identities=21%  Similarity=0.409  Sum_probs=106.3

Q ss_pred             CCcceecCCCCCccCChHHHHHHHhh-hCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhcc
Q 009831          267 APHTHFCTICGKGFKRDANLRMHMRG-HGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCV  345 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~r~-H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L  345 (524)
                      .+..|.|.+|++.|.....|..|+++ |.++-..    ..         ...+.|.|++|+          +.|.....|
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~----~~---------~~~~~~~C~~C~----------~~f~~~~~l   78 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ----NN---------HVCYWEECPREG----------KSFKAKYKL   78 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC----SS---------CCCCBTTCTTSS----------CCCSSHHHH
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc----CC---------ccccccCCCCcc----------cccCCHHHH
Confidence            45679999999999999999999998 6654100    00         001348999999          899999999


Q ss_pred             ccceeeecCCCccccCC--CCCccccChhhhhhhhc-ccCCCceecc---CCCccCChhHHHHHHHhhcCCCCC
Q 009831          346 KNHYKRTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      ..|++.|+++++|.|.+  |+ +.|.....|.+|++ |+++++|.|.   |++.|.++..|.+|+++|++++|+
T Consensus        79 ~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~  151 (155)
T 2rpc_A           79 VNHIRVHTGEKPFPCPFPGCG-KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSG  151 (155)
T ss_dssp             HHHTHHHHCCCSEECSCTTTC-CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCS
T ss_pred             HHHHHhcCCCCcccCCcCCCC-CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            99999999999999998  99 99999999999999 9999999998   999999999999999999996544

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.8e-22  Score=181.90  Aligned_cols=138  Identities=21%  Similarity=0.419  Sum_probs=124.3

Q ss_pred             CCCCcccCCCCCCCChhhhhhhh-hhccCCcceecCC-----CCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCC
Q 009831          240 DEDDADDGEQLPPGSYEILQLEK-EEILAPHTHFCTI-----CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSE  313 (524)
Q Consensus       240 ~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~k~~~C~~-----CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~  313 (524)
                      ...|+.|++.|.....+..|+.. +.+.++++|.|.+     |++.|.....|..|+++|.++                 
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~-----------------   65 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE-----------------   65 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC-----------------
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC-----------------
Confidence            46789999999877777777653 2577889999875     349999999999999999988                 


Q ss_pred             CCccccccCCC--CCcccCcCcCCccccchhhccccceeeecCCCccccCC--CCCccccChhhhhhhh-c-ccCCCcee
Q 009831          314 PMLIKRYSCPY--AGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSR--CNTKKFSVIADLKTHE-K-HCGKDKWL  387 (524)
Q Consensus       314 h~~ekpy~C~~--Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~-r-Htgekpy~  387 (524)
                          ++|.|++  |+          +.|.....|..|++.|+++++|.|++  |+ +.|.....|..|+ + |+++++|.
T Consensus        66 ----~~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~L~~H~~~~H~~~~~~~  130 (155)
T 2gli_A           66 ----KPHKCTFEGCR----------KSYSRLENLKTHLRSHTGEKPYMCEHEGCS-KAFSNASDRAKHQNRTHSNEKPYV  130 (155)
T ss_dssp             ----CCCCCCSTTCC----------CCCSSHHHHHHHHHHTTTCCCEECCSTTCC-CEESSSSTTHHHHHHTTCSCCCEE
T ss_pred             ----CCccCCCCCCC----------CcccCHHHHHHHHHHcCCCCCeeCCCCCCC-CccCCHHHHHHHHHHhcCCCCCee
Confidence                9999986  99          99999999999999999999999998  99 9999999999999 7 99999999


Q ss_pred             cc---CCCccCChhHHHHHHHhhcC
Q 009831          388 CS---CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       388 C~---Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |.   |++.|.++..|..|+++|+|
T Consensus       131 C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          131 CKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCCccccCCHHHHHHHHHhhcC
Confidence            95   99999999999999999976

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.86  E-value=6.1e-23  Score=183.95  Aligned_cols=101  Identities=22%  Similarity=0.380  Sum_probs=94.3

Q ss_pred             hccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhh
Q 009831          264 EILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTIL  343 (524)
Q Consensus       264 ~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~  343 (524)
                      .+.|+++|+|++||+.|.....|..|+++|+++                     +||.|++|+          +.|....
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~---------------------k~~~C~~C~----------k~F~~~~   64 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWE---------------------KKYPCRYCE----------KVFPLAE   64 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHHCC---------------------SCEECSSSS----------CEESSHH
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCC---------------------CCeeCCccC----------eeccccc
Confidence            356899999999999999999999999999988                     999999999          9999999


Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCC------ceecc-CCCccCC
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKD------KWLCS-CGTTFSR  396 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek------py~C~-Cgk~F~~  396 (524)
                      .|..|+++|++++||.|++|+ +.|.....|..|++ |++++      +|+|. |++.|.+
T Consensus        65 ~L~~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           65 YRTKHEIHHTGERRYQCLACG-KSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             HHHHHHHHHHTCCCEEESSSC-CEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             chhhhccccCCCccccCCCCC-CCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            999999999999999999999 99999999999999 87654      58999 9999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.82  E-value=1.6e-21  Score=168.76  Aligned_cols=110  Identities=22%  Similarity=0.423  Sum_probs=103.2

Q ss_pred             CccccccCCC--CCcccCcCcCCccccchhhccccceeeecCCCccccC--CCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          315 MLIKRYSCPY--AGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       315 ~~ekpy~C~~--Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +++++|.|++  |+          +.|.....|..|++.|+++++|.|.  .|+ +.|.....|..|++ |+++++|.|.
T Consensus         2 ~~~~~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~   70 (119)
T 2jp9_A            2 SEKRPFMCAYPGCN----------KRYFKLSHLQMHSRKHTGEKPYQCDFKDCE-RRFSRSDQLKRHQRRHTGVKPFQCK   70 (119)
T ss_dssp             CSSCCBCCCSTTSC----------CCBSCHHHHHHHHHHHHTTCCEECCSTTCC-CEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCeeeeCCCCCCc----------chhCCHHHHHHHHHhhCCCCCccCCCCCCc-CccCCHHHHHHHHHHcCCCCCccCC
Confidence            4569999997  99          9999999999999999999999999  799 99999999999999 9999999999


Q ss_pred             -CCCccCChhHHHHHHHhhcCCCCCCCCCC--CCCCCCCCCCcccccccccc
Q 009831          390 -CGTTFSRKDKLFGHIALFQGHTPAIPLDE--TIKGLAGPSDRREGNEATSK  438 (524)
Q Consensus       390 -Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C--~~C~~~f~~~~~l~~H~~~~  438 (524)
                       |++.|.+...|..|+++|++   .++|.|  ++|++.|.....|..|++.|
T Consensus        71 ~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           71 TCQRKFSRSDHLKTHTRTHTG---EKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TTCCEESCHHHHHHHHHHHHT---CCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ccCchhCCHHHHHHHHHHhcC---CCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence             99999999999999999999   456788  89999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=3.2e-21  Score=167.83  Aligned_cols=113  Identities=19%  Similarity=0.343  Sum_probs=104.3

Q ss_pred             CccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-c---cCCCceecc-
Q 009831          315 MLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-H---CGKDKWLCS-  389 (524)
Q Consensus       315 ~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-H---tgekpy~C~-  389 (524)
                      +++++|.|++|+          +.|.....|..|++.|+.+++|.|.+|+ +.|.....|..|++ |   .++++|.|. 
T Consensus         3 ~~~~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~~~~~~~~~~~~C~~   71 (124)
T 2dlq_A            3 SGSSGVECPTCH----------KKFLSKYYLKVHNRKHTGEKPFECPKCG-KCYFRKENLLEHEARNCMNRSEQVFTCSV   71 (124)
T ss_dssp             CCCSSCCCTTTC----------CCCSSHHHHHHHHHHHSSCCSCBCTTTC-CBCSSHHHHHHHHHHCCCCSCCCCEECSS
T ss_pred             CCCCCCCCCCCC----------CcCCCHHHHHHHHHhCCCCCCeECCCCC-chhcCHHHHHHHHhhhhcCCCCCCeECCC
Confidence            456999999999          9999999999999999999999999999 99999999999997 4   688999999 


Q ss_pred             CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccc-cCCC
Q 009831          390 CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATS-KIGS  441 (524)
Q Consensus       390 Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~-~~gs  441 (524)
                      |++.|.+...|..|+++|++   .++|.|++|++.|.....|..|++. |.+.
T Consensus        72 C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           72 CQETFRRRMELRLHMVSHTG---EMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SCCEESSHHHHHHHHHHHSS---SCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CCCccCCHHHHHHHHHHcCC---CCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            99999999999999999998   5678999999999999999999985 5553

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=1.4e-20  Score=164.33  Aligned_cols=113  Identities=20%  Similarity=0.356  Sum_probs=100.4

Q ss_pred             cccccCC--CCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc---C
Q 009831          317 IKRYSCP--YAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS---C  390 (524)
Q Consensus       317 ekpy~C~--~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~---C  390 (524)
                      +++|.|+  .|+          +.|.....|..|++.| ++++|.|.+|+ +.|.....|..|++ |+++++|.|.   |
T Consensus         3 ~~~~~C~~~~C~----------~~f~~~~~l~~H~~~h-~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   70 (124)
T 1ubd_C            3 PRTIACPHKGCT----------KMFRDNSAMRKHLHTH-GPRVHVCAECG-KAFVESSKLKRHQLVHTGEKPFQCTFEGC   70 (124)
T ss_dssp             --CEECCSTTCC----------CEESSHHHHHHHHGGG-SCCCEECTTTC-CEESSHHHHHHHGGGTSCCCCEECCSTTC
T ss_pred             CCcccCCCCCCc----------CccCCHHHHHHHHHHc-CCCCeECCCCC-chhCCHHHHHHHHHHcCCCCCeeCCCCCC
Confidence            4899999  899          9999999999999988 88999999999 99999999999999 9999999995   9


Q ss_pred             CCccCChhHHHHHHHhhcCCCCCCCCCCC--CCCCCCCCCccccccccccCCCCCC
Q 009831          391 GTTFSRKDKLFGHIALFQGHTPAIPLDET--IKGLAGPSDRREGNEATSKIGSTNF  444 (524)
Q Consensus       391 gk~F~~ks~L~~H~r~Htg~kp~k~~~C~--~C~~~f~~~~~l~~H~~~~~gs~~~  444 (524)
                      ++.|.+...|..|+++|++   .++|.|+  .|++.|.....|..|++.|++.+++
T Consensus        71 ~~~f~~~~~l~~H~~~h~~---~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           71 GKRFSLDFNLRTHVRIHTG---DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CCEESCHHHHHHHHHHHHC---CCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             cCccCCHHHHHHHHHHhCC---CCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            9999999999999999999   4567895  5999999999999999999987654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=1.6e-19  Score=164.01  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=106.1

Q ss_pred             ccccccCCCCCcccCcCcCCccccchhhccccceee-ecCCCc--------cccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          316 LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKR-THCDKS--------YVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       316 ~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~-h~~~Kp--------y~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      ..++|.|.+|+          +.|.....|..|++. |..+++        |.|.+|+ +.|.....|..|++ |+++++
T Consensus        22 ~~~~~~C~~C~----------~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~   90 (155)
T 2rpc_A           22 AQLSRPKKSCD----------RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREG-KSFKAKYKLVNHIRVHTGEKP   90 (155)
T ss_dssp             TCCSSSCCCCC----------CCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSS-CCCSSHHHHHHHTHHHHCCCS
T ss_pred             hhcccccccCC----------cccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcc-cccCCHHHHHHHHHhcCCCCc
Confidence            34889999999          999999999999998 545444        8999999 99999999999999 999999


Q ss_pred             eecc---CCCccCChhHHHHHHHhhcCCCCCCCCCCCC--CCCCCCCCccccccccccCCCCCCC
Q 009831          386 WLCS---CGTTFSRKDKLFGHIALFQGHTPAIPLDETI--KGLAGPSDRREGNEATSKIGSTNFN  445 (524)
Q Consensus       386 y~C~---Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~--C~~~f~~~~~l~~H~~~~~gs~~~s  445 (524)
                      |.|.   |++.|.+...|..|+++|++   .++|.|.+  |++.|.....|..|++.|+++++|.
T Consensus        91 ~~C~~~~C~~~f~~~~~L~~H~~~h~~---~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~  152 (155)
T 2rpc_A           91 FPCPFPGCGKIFARSENLKIHKRTHTG---EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP  152 (155)
T ss_dssp             EECSCTTTCCEESCHHHHHHHHTTTCS---SCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSC
T ss_pred             ccCCcCCCCCccCCHHHHHHHHHhhCC---CCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence            9996   99999999999999999998   46688997  9999999999999999999998875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=1.3e-18  Score=147.71  Aligned_cols=89  Identities=21%  Similarity=0.476  Sum_probs=78.3

Q ss_pred             CccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCC
Q 009831          315 MLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGT  392 (524)
Q Consensus       315 ~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk  392 (524)
                      ..+++|.|++|+          +.|.....|..|++.|+.+++|.|.+|+ +.|.....|..|++ |+++++|.|. |++
T Consensus        13 ~~~~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   81 (106)
T 2ee8_A           13 KTKKEFICKFCG----------RHFTKSYNLLIHERTHTDERPYTCDICH-KAFRRQDHLRDHRYIHSKEKPFKCQECGK   81 (106)
T ss_dssp             CCCCCCBCSSSC----------CBCSSHHHHHHHHHHHCCSCCCBCSSSC-CBCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred             CCCcCeECCCCC----------CccCCHHHHHHHHHHcCCCCCcCCCCcc-chhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence            345889999999          8888888899999999999999999999 99999999999998 9999999999 999


Q ss_pred             ccCChhHHHHHHHhhcCCCCCC
Q 009831          393 TFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       393 ~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      .|.+...|..|+++|++++|+.
T Consensus        82 ~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           82 GFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             CCSSHHHHHHHHHHTTSCCCCC
T ss_pred             cccCHHHHHHHHHHhCCCCCCc
Confidence            9999999999999998866654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.9e-18  Score=143.91  Aligned_cols=88  Identities=18%  Similarity=0.310  Sum_probs=77.8

Q ss_pred             CCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CC
Q 009831          314 PMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CG  391 (524)
Q Consensus       314 h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cg  391 (524)
                      +.++++|.|++|+          +.|.....|..|++.|+.+++|.|.+|+ +.|.....|..|++ |+++++|.|. |+
T Consensus         3 ~~~~~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~   71 (96)
T 2dmd_A            3 SGSSGPHKCEVCG----------KCFSRKDKLKTHMRCHTGVKPYKCKTCD-YAAADSSSLNKHLRIHSDERPFKCQICP   71 (96)
T ss_dssp             CCCCCCCCBTTTT----------BCCCCHHHHHHHGGGCCCCCSEECSSSC-CEESSHHHHHHHHHHSCCCCCEECSSSS
T ss_pred             CCCCcCeECCCCC----------CccCCHHHHHHHHHhcCCCCCEeCCCCC-CccCCHHHHHHHHHHhCCCCCccCCCCC
Confidence            3456889999999          8888888999999999999999999999 99999999999998 9999999999 99


Q ss_pred             CccCChhHHHHHHHhhcCCCC
Q 009831          392 TTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       392 k~F~~ks~L~~H~r~Htg~kp  412 (524)
                      +.|.+...|..|+++|+++++
T Consensus        72 ~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           72 YASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             CEESSHHHHHHHHTTCCSCCC
T ss_pred             CccCCHHHHHHHHHHhcCCCC
Confidence            999999999999999988653

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.73  E-value=2.2e-18  Score=146.30  Aligned_cols=90  Identities=24%  Similarity=0.526  Sum_probs=86.2

Q ss_pred             CCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccc
Q 009831          267 APHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVK  346 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~  346 (524)
                      .+++|.|.+|++.|.....|..|+++|.++                     ++|.|++|+          +.|.....|.
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~~~~l~   62 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDE---------------------RPYTCDICH----------KAFRRQDHLR   62 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCS---------------------CCCBCSSSC----------CBCSCHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCC---------------------CCcCCCCcc----------chhCCHHHHH
Confidence            567899999999999999999999999988                     999999999          9999999999


Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      .|++.|+++++|.|.+|+ +.|.....|..|++ |+++++|.+
T Consensus        63 ~H~~~h~~~~~~~C~~C~-~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           63 DHRYIHSKEKPFKCQECG-KGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHGGGSCCCCTTSCSSSC-CCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHhCCCCCeECCCcC-CcccCHHHHHHHHHHhCCCCCCcC
Confidence            999999999999999999 99999999999999 999999865

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3.7e-18  Score=147.23  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=82.9

Q ss_pred             hhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccceee--ecCCCcc-ccCCCCCccc--cChhhhh
Q 009831          301 AALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKR--THCDKSY-VCSRCNTKKF--SVIADLK  375 (524)
Q Consensus       301 ~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~--h~~~Kpy-~C~~C~~K~F--~~~s~L~  375 (524)
                      ..|..|++    +|+++++|.|++|+          +.|.....|..|++.  |...+++ .|.+|+ +.|  .....|.
T Consensus         5 ~~l~~H~~----~H~~~~~~~C~~C~----------k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~-~~f~f~~~~~l~   69 (115)
T 2dmi_A            5 SSGKLYGS----IFTGASKFRCKDCS----------AAYDTLVELTVHMNETGHYRDDNHETDNNNP-KRWSKPRKRSLL   69 (115)
T ss_dssp             CCCCCCCC----CCCCCCSEEBSSSS----------CEESSHHHHHHHHHHTCCCBCSCCCCCCCCC-SCCSSCCCCCCC
T ss_pred             hhhhhhee----eeCCCCCEECCccC----------chhcCHHHHHHHHHHhCccccCCCccCCCCC-cccccccHHHHH
Confidence            34555555    46667999999999          999999999999998  7777765 499999 999  8999999


Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      .|++ |++++||.|. |++.|.++..|.+|+++|+..
T Consensus        70 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             HHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            9999 9999999999 999999999999999998763

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=1.7e-18  Score=142.21  Aligned_cols=84  Identities=25%  Similarity=0.555  Sum_probs=75.9

Q ss_pred             cccccCC--CCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCC
Q 009831          317 IKRYSCP--YAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGT  392 (524)
Q Consensus       317 ekpy~C~--~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk  392 (524)
                      +++|.|+  .|+          +.|.....|..|++.|+.+++|.|.+|+ +.|.....|..|++ |+++++|.|. |++
T Consensus         2 ~k~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   70 (90)
T 1a1h_A            2 ERPYACPVESCD----------RRFSQSGSLTRHIRIHTGQKPFQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGR   70 (90)
T ss_dssp             -CCEECCSSSCC----------CEESSHHHHHHHHHHHHCCCCEECTTTC-CEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             CCceECCCCCCC----------CccCCHHHHHHHHHHhCCCCCccCCCCC-cccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence            4899998  599          8899999999999999999999999999 99999999999999 9999999999 999


Q ss_pred             ccCChhHHHHHHHhhcCCC
Q 009831          393 TFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       393 ~F~~ks~L~~H~r~Htg~k  411 (524)
                      .|.++..|..|+++|++++
T Consensus        71 ~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           71 KFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             EESSHHHHHHHHGGGGC--
T ss_pred             hhCCHHHHHHHHHHhcccC
Confidence            9999999999999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=3.3e-18  Score=145.89  Aligned_cols=88  Identities=22%  Similarity=0.368  Sum_probs=74.7

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhcccCCCceecc-CC
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CG  391 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cg  391 (524)
                      .|+++++|.|++|+          +.|.....|..|++.|  .++|.|.+|+ +.|.....|..|++|++++||.|. |+
T Consensus        10 ~h~~~~~~~C~~C~----------~~f~~~~~l~~H~~~H--~~~~~C~~C~-~~f~~~~~l~~H~~H~~~~~~~C~~C~   76 (107)
T 1wjp_A           10 PVENKEVYQCRLCN----------AKLSSLLEQGSHERLC--RNAAVCPYCS-LRFFSPELKQEHESKCEYKKLTCLECM   76 (107)
T ss_dssp             CCCCCCCCBCTTTC----------CBCSSHHHHHHHHHHH--HHSBCCTTTC-CCBSSHHHHHHHHHHCSTGGGEEGGGT
T ss_pred             ccCCCcCeECCCCC----------CccCCHHHHHHHHHHC--CCCccCCCCC-CccCCHHHHHHHHHcCCCCCccCcccc
Confidence            56667889999998          8888888888888887  4789999998 999999999999888888999999 99


Q ss_pred             CccCChhHHHHHHH-hhcCCCCC
Q 009831          392 TTFSRKDKLFGHIA-LFQGHTPA  413 (524)
Q Consensus       392 k~F~~ks~L~~H~r-~Htg~kp~  413 (524)
                      +.|.++..|..|++ +|++++++
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQNNMA   99 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCCCCC
T ss_pred             chhCCHHHHHHHHHHHcCCCCCC
Confidence            99999999999987 78775544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=4.6e-18  Score=136.97  Aligned_cols=80  Identities=28%  Similarity=0.603  Sum_probs=71.2

Q ss_pred             cccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCC
Q 009831          319 RYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSR  396 (524)
Q Consensus       319 py~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~  396 (524)
                      ||.|++|+          +.|.....|..|++.|+++++|.|..|+ +.|.....|..|++ |+++++|.|. |++.|.+
T Consensus         1 ~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   69 (82)
T 2kmk_A            1 SFDCKICG----------KSFKRSSTLSTHLLIHSDTRPYPCQYCG-KRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ   69 (82)
T ss_dssp             CEECSSSC----------CEESSHHHHHHHHHHHHTCCCEECSSSC-CEESSHHHHHHHHHHHHTCCCEECTTTSCEESS
T ss_pred             CccCCCCc----------ccccCchhHHHHHHHcCCCCCeeCCcCC-hhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC
Confidence            58899999          8888888899999998888999999998 99999999999998 9999999999 9999999


Q ss_pred             hhHHHHHHHhhcC
Q 009831          397 KDKLFGHIALFQG  409 (524)
Q Consensus       397 ks~L~~H~r~Htg  409 (524)
                      +..|..|+++|+|
T Consensus        70 ~~~l~~H~~~H~g   82 (82)
T 2kmk_A           70 SSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             hHHHHHHHHhhCC
Confidence            9999999998875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.3e-17  Score=138.81  Aligned_cols=90  Identities=22%  Similarity=0.351  Sum_probs=83.2

Q ss_pred             ecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 009831          352 THCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDR  429 (524)
Q Consensus       352 h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~  429 (524)
                      +.++++|.|.+|+ +.|.....|..|++ |.++++|.|. |++.|.....|..|+++|++   .++|.|.+|++.|....
T Consensus         3 ~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~   78 (96)
T 2dmd_A            3 SGSSGPHKCEVCG-KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD---ERPFKCQICPYASRNSS   78 (96)
T ss_dssp             CCCCCCCCBTTTT-BCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCC---CCCEECSSSSCEESSHH
T ss_pred             CCCCcCeECCCCC-CccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCC---CCCccCCCCCCccCCHH
Confidence            3567899999999 99999999999999 9999999999 99999999999999999988   56789999999999999


Q ss_pred             cccccccccCCCCCCC
Q 009831          430 REGNEATSKIGSTNFN  445 (524)
Q Consensus       430 ~l~~H~~~~~gs~~~s  445 (524)
                      .|..|++.|++..+.+
T Consensus        79 ~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           79 QLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             HHHHHHTTCCSCCCCC
T ss_pred             HHHHHHHHhcCCCCCC
Confidence            9999999999876543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.68  E-value=8.9e-18  Score=137.90  Aligned_cols=87  Identities=22%  Similarity=0.480  Sum_probs=79.4

Q ss_pred             CCcceecC--CCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhc
Q 009831          267 APHTHFCT--ICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILC  344 (524)
Q Consensus       267 ~~k~~~C~--~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~  344 (524)
                      ++++|.|.  .|++.|.....|..|+++|.++                     ++|.|++|+          +.|.....
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~~~~   49 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQ---------------------KPFQCRICM----------RNFSRSDH   49 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCC---------------------CCEECTTTC----------CEESCHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCC---------------------CCccCCCCC----------cccCCHHH
Confidence            36789998  5999999999999999999887                     999999999          99999999


Q ss_pred             cccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          345 VKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       345 L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      |..|++.|+++++|.|.+|+ +.|.....|..|++ |+|++.
T Consensus        50 l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           50 LTTHIRTHTGEKPFACDICG-RKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             HHHHHHHHHCCCCEECTTTC-CEESSHHHHHHHHGGGGC---
T ss_pred             HHHHHHHcCCCCCccCCCCC-chhCCHHHHHHHHHHhcccCC
Confidence            99999999999999999999 99999999999999 999863

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.1e-17  Score=142.54  Aligned_cols=91  Identities=16%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             hccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhh
Q 009831          264 EILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTIL  343 (524)
Q Consensus       264 ~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~  343 (524)
                      .+.++++|+|.+|++.|.....|..|+++|  .                     ++|.|++|+          +.|....
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~---------------------~~~~C~~C~----------~~f~~~~   56 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--R---------------------NAAVCPYCS----------LRFFSPE   56 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--H---------------------HSBCCTTTC----------CCBSSHH
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHC--C---------------------CCccCCCCC----------CccCCHH
Confidence            345788999999999999999999999998  3                     789999999          9999999


Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhc--ccCCCceecc
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK--HCGKDKWLCS  389 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htgekpy~C~  389 (524)
                      .|..|++ |+++++|.|.+|+ +.|.....|++|++  |+++++|.|.
T Consensus        57 ~l~~H~~-H~~~~~~~C~~C~-~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           57 LKQEHES-KCEYKKLTCLECM-RTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHH-HCSTGGGEEGGGT-EECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHH-cCCCCCccCcccc-chhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            9999995 9999999999999 99999999999995  9999999885

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.4e-17  Score=142.40  Aligned_cols=85  Identities=25%  Similarity=0.440  Sum_probs=77.8

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++++|.| .|+          +.|.....|..|++.|+.+++|.|.+|+ +.|.....|..|++ |+++++|.|. |
T Consensus         4 ~h~~~k~~~C-~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (110)
T 2csh_A            4 GSSGDKLYPC-QCG----------KSFTHKSQRDRHMSMHLGLRPYGCGVCG-KKFKMKHHLVGHMKIHTGIKPYECNIC   71 (110)
T ss_dssp             CCCCCCCEEC-TTS----------CEESSHHHHHHHHHHHSCCCSEECTTTS-CEESSSHHHHHHHTTTCCCCCEECSSS
T ss_pred             CCCCCCCEec-cCC----------CccCCHHHHHHHHHHcCCCcCccCCCCC-cccCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            4677799999 899          8899999999999999999999999999 99999999999999 9999999999 9


Q ss_pred             CCccCChhHHHHHHHhhcC
Q 009831          391 GTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       391 gk~F~~ks~L~~H~r~Htg  409 (524)
                      ++.|.++..|..|+++|+.
T Consensus        72 ~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           72 AKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CCEESCHHHHHHHHHHHHH
T ss_pred             cchhcCHHHHHHHHHHccc
Confidence            9999999999999998865

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.68  E-value=1.8e-17  Score=127.67  Aligned_cols=55  Identities=24%  Similarity=0.643  Sum_probs=53.5

Q ss_pred             CCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          355 DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       355 ~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      ||||+|.+|+ |.|.....|++|++ |+|++||.|. ||++|.+++.|.+|+++|+|+
T Consensus         2 EKpy~C~~C~-k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCG-KTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTC-CEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCC-CEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            7999999999 99999999999999 9999999999 999999999999999999985

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=2.6e-17  Score=136.67  Aligned_cols=83  Identities=28%  Similarity=0.614  Sum_probs=56.5

Q ss_pred             ccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCC--Cceecc-CC
Q 009831          316 LIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGK--DKWLCS-CG  391 (524)
Q Consensus       316 ~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htge--kpy~C~-Cg  391 (524)
                      ++++|.|++|+          +.|.....|..|++.|+.+++|.|.+|+ +.|.....|..|++ |+++  ++|.|. |+
T Consensus         4 ~~~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~   72 (95)
T 2yt9_A            4 GSSGVACEICG----------KIFRDVYHLNRHKLSHSGEKPYSCPVCG-LRFKRKDRMSYHVRSHDGSVGKPYICQSCG   72 (95)
T ss_dssp             CCSCEECSSSC----------CEESSSHHHHHHHHHSCSSCSEECSSSC-CEESCHHHHHHHHHHHCCCCCSSBCCSSSC
T ss_pred             CCCCeECCCCC----------CccCChHHHHHHHHhcCCCCCCcCCCCC-CccCCHHHHHHHHHHhcCCCCCceECCCcc
Confidence            44667777777          6666666677777666666777777776 77777777777776 6665  667777 77


Q ss_pred             CccCChhHHHHHHH-hhcC
Q 009831          392 TTFSRKDKLFGHIA-LFQG  409 (524)
Q Consensus       392 k~F~~ks~L~~H~r-~Htg  409 (524)
                      +.|.++..|..|++ +|.+
T Consensus        73 ~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           73 KGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             CCBSSHHHHHHHHHHTSCC
T ss_pred             chhCCHHHHHHHHHHhcCC
Confidence            77777777777764 5554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=7.1e-17  Score=139.11  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=83.3

Q ss_pred             hhhhccCCcceecCCCCCccCChHHHHHHHhh--hCCCCCChhhhcCccccCCCCCCcccc-ccCCCCCcccCcCcCCcc
Q 009831          261 EKEEILAPHTHFCTICGKGFKRDANLRMHMRG--HGDEYKTPAALAKPHKESSSEPMLIKR-YSCPYAGCKRNKDHKKFQ  337 (524)
Q Consensus       261 ~~~~~~~~k~~~C~~CgK~F~~~~~L~~H~r~--H~~ef~~~~~L~~H~~~h~~~h~~ekp-y~C~~Cgc~~~~~~~~~k  337 (524)
                      +...|.++++|.|.+|++.|.....|..|+++  |.++                     ++ +.|++|+          +
T Consensus        10 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~---------------------~~~~~C~~C~----------~   58 (115)
T 2dmi_A           10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD---------------------DNHETDNNNP----------K   58 (115)
T ss_dssp             CCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBC---------------------SCCCCCCCCC----------S
T ss_pred             heeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcccc---------------------CCCccCCCCC----------c
Confidence            33456789999999999999999999999998  4443                     55 4599999          6


Q ss_pred             cc--chhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          338 PL--KTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       338 ~f--~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|  .....|..|++.|++++||.|.+|+ +.|.....|++|++ |.......+.
T Consensus        59 ~f~f~~~~~l~~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           59 RWSKPRKRSLLEMEGKEDAQKVLKCMYCG-HSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CCSSCCCCCCCCCCCSCCCCSSCBCSSSC-CBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             ccccccHHHHHHHhhccCCCcceECCCCC-CccCCHHHHHHHHHHhCCcccCCCC
Confidence            66  8888999999999999999999999 99999999999999 7766655544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.66  E-value=2.4e-17  Score=132.73  Aligned_cols=81  Identities=36%  Similarity=0.668  Sum_probs=77.4

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccce
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHY  349 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~  349 (524)
                      +|.|.+|++.|.....|..|+++|.++                     ++|.|++|+          +.|.....|..|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~~~~l~~H~   49 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDT---------------------RPYPCQYCG----------KRFHQKSDMKKHT   49 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTC---------------------CCEECSSSC----------CEESSHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCC---------------------CCeeCCcCC----------hhhCCHHHHHHHH
Confidence            589999999999999999999999887                     999999999          9999999999999


Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc-ccC
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCG  382 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htg  382 (524)
                      +.|+++++|.|.+|+ +.|.....|.+|++ |+|
T Consensus        50 ~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           50 FIHTGEKPHKCQVCG-KAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHTCCCEECTTTS-CEESSHHHHHHHHHHHC-
T ss_pred             HHhcCCCCCcCCCcc-hhhCChHHHHHHHHhhCC
Confidence            999999999999999 99999999999999 976

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=7.4e-17  Score=133.88  Aligned_cols=87  Identities=34%  Similarity=0.582  Sum_probs=81.4

Q ss_pred             cCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhcc
Q 009831          266 LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCV  345 (524)
Q Consensus       266 ~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L  345 (524)
                      .++++|.|.+|++.|.....|..|+++|.++                     ++|.|++|+          +.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~~~~l   51 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE---------------------KPYSCPVCG----------LRFKRKDRM   51 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSS---------------------CSEECSSSC----------CEESCHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCC---------------------CCCcCCCCC----------CccCCHHHH
Confidence            4678999999999999999999999999887                     999999999          999999999


Q ss_pred             ccceeeecCC--CccccCCCCCccccChhhhhhhhc--ccCCC
Q 009831          346 KNHYKRTHCD--KSYVCSRCNTKKFSVIADLKTHEK--HCGKD  384 (524)
Q Consensus       346 ~~H~~~h~~~--Kpy~C~~C~~K~F~~~s~L~~H~r--Htgek  384 (524)
                      ..|++.|+++  ++|.|.+|+ +.|.....|..|++  |.++.
T Consensus        52 ~~H~~~h~~~~~~~~~C~~C~-~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           52 SYHVRSHDGSVGKPYICQSCG-KGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             HHHHHHHCCCCCSSBCCSSSC-CCBSSHHHHHHHHHHTSCCCS
T ss_pred             HHHHHHhcCCCCCceECCCcc-chhCCHHHHHHHHHHhcCCCC
Confidence            9999999987  999999999 99999999999985  88763

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.2e-16  Score=136.60  Aligned_cols=86  Identities=24%  Similarity=0.385  Sum_probs=81.1

Q ss_pred             hccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhh
Q 009831          264 EILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTIL  343 (524)
Q Consensus       264 ~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~  343 (524)
                      .|.++++|.| +|++.|.....|..|+++|.++                     ++|.|++|+          +.|....
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~C~----------~~f~~~~   51 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGL---------------------RPYGCGVCG----------KKFKMKH   51 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCC---------------------CSEECTTTS----------CEESSSH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCC---------------------cCccCCCCC----------cccCCHH
Confidence            3568899999 9999999999999999999988                     999999999          9999999


Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccC
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCG  382 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htg  382 (524)
                      .|..|++.|+++++|.|.+|+ +.|.....|.+|++ |..
T Consensus        52 ~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           52 HLVGHMKIHTGIKPYECNICA-KRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHTTTCCCCCEECSSSC-CEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCeeCCCCc-chhcCHHHHHHHHHHccc
Confidence            999999999999999999999 99999999999999 753

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=2.6e-16  Score=131.67  Aligned_cols=82  Identities=27%  Similarity=0.550  Sum_probs=72.0

Q ss_pred             cccccCCC--CCcccCcCcCCccccchhhccccceeeecCCCccccC--CCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          317 IKRYSCPY--AGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       317 ekpy~C~~--Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .++|.|.+  |+          +.|.....|..|++.|+.+++|.|.  .|+ +.|.....|..|++ |+++++|.|. |
T Consensus        13 ~~~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C   81 (100)
T 2ebt_A           13 RRIHYCDYPGCT----------KVYTKSSHLKAHLRTHTGEKPYKCTWEGCD-WRFARSDELTRHYRKHTGAKPFQCGVC   81 (100)
T ss_dssp             CCCEECCSSSCC----------CEESCHHHHHHHHHHHSCCCCEECCSSSCC-CEESSHHHHHHHHHHHTSCCSCBCSSS
T ss_pred             CcceEcCCCCCC----------CcccCHHHHHHHHHHhCCCCCeeCCCCCCC-CccCCHHHHHHHHHHhCCCCCeECCCC
Confidence            47899986  88          8888888899999988888999996  598 99999999999998 9999999999 9


Q ss_pred             CCccCChhHHHHHHHhhcC
Q 009831          391 GTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       391 gk~F~~ks~L~~H~r~Htg  409 (524)
                      ++.|.++..|..|+++|++
T Consensus        82 ~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           82 NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCBCSSHHHHHHHHHHHCC
T ss_pred             cCccCCHHHHHHHHHHhCC
Confidence            9999999999999998864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.59  E-value=4.2e-16  Score=127.56  Aligned_cols=80  Identities=29%  Similarity=0.585  Sum_probs=71.5

Q ss_pred             ccccCCC--CCcccCcCcCCccccchhhccccceeeecCCCccccC--CCCCccccChhhhhhhhc-ccCCCceecc-CC
Q 009831          318 KRYSCPY--AGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWLCS-CG  391 (524)
Q Consensus       318 kpy~C~~--Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cg  391 (524)
                      ++|.|++  |+          +.|.....|..|++.|+++++|.|.  .|+ +.|.....|..|++ |+++++|.|. |+
T Consensus         4 ~~~~C~~~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (89)
T 2wbs_A            4 ATHTCDYAGCG----------KTYTKSSHLKAHLRTHTGEKPYHCDWDGCG-WKFARSDELTRHYRKHTGHRPFQCQKCD   72 (89)
T ss_dssp             CCEECCSTTTC----------CEESSHHHHHHHHTTSCSSCCEECCSTTTC-CEESSHHHHHHHHHHHHCCCCEECSSSS
T ss_pred             CCeeCCCCCCC----------CcCCCHHHHHHHHHhcCCCCCcCCCCCCCC-CccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            7789998  88          8888888899999999999999997  599 99999999999998 9999999999 99


Q ss_pred             CccCChhHHHHHHHhhc
Q 009831          392 TTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       392 k~F~~ks~L~~H~r~Ht  408 (524)
                      +.|.....|..|+++|.
T Consensus        73 ~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           73 RAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CEESSHHHHHHHGGGGC
T ss_pred             cccCCHHHHHHHHHhhC
Confidence            99999999999998873

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.4e-15  Score=123.65  Aligned_cols=78  Identities=26%  Similarity=0.472  Sum_probs=70.1

Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCC----Cceecc-CCCccCChhHHHHHHHhhcCCCCCCCCC
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGK----DKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLD  417 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htge----kpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~  417 (524)
                      .|.+|+++|+++++|.|.+|+ +.|.....|.+|++ |+++    ++|.|. |++.|.++..|..|+++|++   .+++.
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~-~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~---~~~~~   77 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCD-KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG---PDGVE   77 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSS-CEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCC---CCSCC
T ss_pred             CcccccceecCCCCCcCCCCC-CccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccC---CCCcc
Confidence            467899999999999999999 99999999999998 6654    799999 99999999999999999998   55667


Q ss_pred             CCCCCCCC
Q 009831          418 ETIKGLAG  425 (524)
Q Consensus       418 C~~C~~~f  425 (524)
                      |..|+..+
T Consensus        78 ~~~~~~~~   85 (86)
T 1x6h_A           78 GENSGPSS   85 (86)
T ss_dssp             CCCCCCCC
T ss_pred             cCCCCCCC
Confidence            88888765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.57  E-value=1.2e-15  Score=127.64  Aligned_cols=84  Identities=29%  Similarity=0.591  Sum_probs=78.9

Q ss_pred             CCcceecCC--CCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCC--CCCcccCcCcCCccccchh
Q 009831          267 APHTHFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCP--YAGCKRNKDHKKFQPLKTI  342 (524)
Q Consensus       267 ~~k~~~C~~--CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~--~Cgc~~~~~~~~~k~f~~~  342 (524)
                      ..++|.|.+  |++.|.....|..|+++|.++                     ++|.|+  .|+          +.|...
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~~~C~----------~~f~~~   60 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGE---------------------KPYKCTWEGCD----------WRFARS   60 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCC---------------------CCEECCSSSCC----------CEESSH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCC---------------------CCeeCCCCCCC----------CccCCH
Confidence            457899997  999999999999999999988                     999997  599          899999


Q ss_pred             hccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccC
Q 009831          343 LCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCG  382 (524)
Q Consensus       343 ~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htg  382 (524)
                      ..|..|++.|+++++|.|.+|+ +.|.....|..|++ |++
T Consensus        61 ~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           61 DELTRHYRKHTGAKPFQCGVCN-RSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHHHTSCCSCBCSSSC-CBCSSHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCCeECCCCc-CccCCHHHHHHHHHHhCC
Confidence            9999999999999999999999 99999999999999 875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.55  E-value=1.5e-15  Score=124.15  Aligned_cols=82  Identities=30%  Similarity=0.666  Sum_probs=77.4

Q ss_pred             CcceecCC--CCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCC--CCCcccCcCcCCccccchhh
Q 009831          268 PHTHFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCP--YAGCKRNKDHKKFQPLKTIL  343 (524)
Q Consensus       268 ~k~~~C~~--CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~--~Cgc~~~~~~~~~k~f~~~~  343 (524)
                      .++|.|.+  |++.|.....|..|+++|.++                     ++|.|+  .|+          +.|....
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~~~C~----------~~f~~~~   51 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGE---------------------KPYHCDWDGCG----------WKFARSD   51 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSS---------------------CCEECCSTTTC----------CEESSHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCC---------------------CCcCCCCCCCC----------CccCCHH
Confidence            56799999  999999999999999999887                     999997  599          9999999


Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhc-cc
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HC  381 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Ht  381 (524)
                      .|..|++.|+++++|.|.+|+ +.|.....|..|++ |.
T Consensus        52 ~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           52 ELTRHYRKHTGHRPFQCQKCD-RAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             HHHHHHHHHHCCCCEECSSSS-CEESSHHHHHHHGGGGC
T ss_pred             HHHHHHHHcCCCCCccCCCCC-cccCCHHHHHHHHHhhC
Confidence            999999999999999999999 99999999999999 84

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.4e-15  Score=127.96  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=70.5

Q ss_pred             cchhhccccceeeecCCCccccCCCCCcccc-Chhhhhhhhc-ccC-CCceecc-CCCccCChhHHHHHHHhhcCCCCCC
Q 009831          339 LKTILCVKNHYKRTHCDKSYVCSRCNTKKFS-VIADLKTHEK-HCG-KDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       339 f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~-~~s~L~~H~r-Htg-ekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      +.....+..|+++|..+++|.|.+|+ +.|. ....|++|++ |++ +++|.|. |++.|.++..|.+|+++|++++|..
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~-k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCN-VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTC-CCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCC-CChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            34445577899999999999999999 9999 9999999999 998 9999999 9999999999999999999988765


Q ss_pred             CCCCC
Q 009831          415 PLDET  419 (524)
Q Consensus       415 ~~~C~  419 (524)
                      +....
T Consensus        85 ~~~~~   89 (98)
T 2gqj_A           85 AEASE   89 (98)
T ss_dssp             CCCCC
T ss_pred             CCCCc
Confidence            54433

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.53  E-value=2.1e-16  Score=129.96  Aligned_cols=81  Identities=17%  Similarity=0.305  Sum_probs=70.8

Q ss_pred             cccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCcc
Q 009831          317 IKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTF  394 (524)
Q Consensus       317 ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F  394 (524)
                      ++||.|++|+          +.|.....|..|++.|+++++|.|.+|+ +.|.....|..|++ |++ ++|.|. |++.|
T Consensus         1 ek~~~C~~C~----------k~f~~~~~L~~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f   68 (88)
T 1llm_C            1 MKPFQCRICM----------RNFSRSDHLTTHIRTHTGEKPFACDICG-RKFARSDERKRHRDIQHI-LPILEDKVEELL   68 (88)
T ss_dssp             CCCEECTTTC----------CEESCHHHHHHHHHHHHCCCCEECTTTC-CEESSHHHHHHHHHHHTH-HHHHHHHHHHHH
T ss_pred             CCCCcCCCCC----------CccCCHHHHHHHHHHcCCCCCccCCCCC-CccCCHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence            3789999999          8888888899999999899999999999 99999999999988 764 789999 99999


Q ss_pred             CChhHHHHHHHhhcC
Q 009831          395 SRKDKLFGHIALFQG  409 (524)
Q Consensus       395 ~~ks~L~~H~r~Htg  409 (524)
                      .....|..|++.+++
T Consensus        69 ~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           69 SKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHH
Confidence            999999999887654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.52  E-value=3.4e-16  Score=137.69  Aligned_cols=114  Identities=14%  Similarity=0.014  Sum_probs=87.7

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCcccc------ChhhhhhhhcccCCCce
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFS------VIADLKTHEKHCGKDKW  386 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~------~~s~L~~H~rHtgekpy  386 (524)
                      .+.+.|+|.|..+++.        ..|.....++.| ......+.+.|++|. +.|.      ....|..|++|++++||
T Consensus         6 ~~~~~k~~~~~~k~~~--------~~~s~ee~~~~~-~l~~~~~~~~c~~~~-~~~~~~~~~~~~~~l~~h~~h~~~~~~   75 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIF--------IHVTLEELKRYH-QLTPEQKRLIRAIVK-TLIHNPQLLDESSYLYRLLASKAISQF   75 (129)
T ss_dssp             CCTTCCGGGGCSSCEE--------EECCHHHHHHHT-TSCHHHHHHHHHHHH-HHHHCGGGTTTHHHHHHHHHHHHHCSE
T ss_pred             hcccccccccccCCee--------eeecHHhhhccc-cCChhhCcccchhhh-cccCCCcccCCHHHHHHHHHhCCCCCe
Confidence            4667799999887732        122222211112 233345778888887 7665      66777777779999999


Q ss_pred             ecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccccCCC
Q 009831          387 LCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGS  441 (524)
Q Consensus       387 ~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~gs  441 (524)
                      .|. ||+.|.++..|..|+++|     .++|.|++|++.|.....|..|++.|++.
T Consensus        76 ~C~~C~k~f~~~~~l~~H~~~H-----~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           76 VCPLCLMPFSSSVSLKQHIRYT-----EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHT-----CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             ECCCCCcccCCHhHHHHHHHHC-----CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            999 999999999999999998     45789999999999999999999999875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.52  E-value=5.9e-16  Score=136.21  Aligned_cols=118  Identities=18%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhc
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILC  344 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~  344 (524)
                      +.+.|+|.|..++...  ...+..|.+.|...                  ...+.+.|++|+..+.    ....|.....
T Consensus         7 ~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l~------------------~~~~~~~c~~~~~~~~----~~~~~~~~~~   62 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFI--HVTLEELKRYHQLT------------------PEQKRLIRAIVKTLIH----NPQLLDESSY   62 (129)
T ss_dssp             CTTCCGGGGCSSCEEE--ECCHHHHHHHTTSC------------------HHHHHHHHHHHHHHHH----CGGGTTTHHH
T ss_pred             cccccccccccCCeee--eecHHhhhccccCC------------------hhhCcccchhhhcccC----CCcccCCHHH
Confidence            4477889998765432  33455565555321                  1237889999971111    0123345566


Q ss_pred             cccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          345 VKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       345 L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |..|+ .|++++||.|.+|+ +.|.....|+.|++ |  ++||.|. |++.|.+++.|.+|+++|+|.
T Consensus        63 l~~h~-~h~~~~~~~C~~C~-k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           63 LYRLL-ASKAISQFVCPLCL-MPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHH-HHHHHCSEECTTTC-CEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHH-HhCCCCCeECCCCC-cccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            66776 69999999999999 99999999999999 9  9999999 999999999999999999984

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.2e-14  Score=116.35  Aligned_cols=66  Identities=30%  Similarity=0.699  Sum_probs=59.6

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCC
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      +...+.++++|.|.+|+ +.|.....|.+|++ |+++++|.|. |++.|.++..|..|+++|++++|++
T Consensus         9 ~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A            9 SEWQQRERRRYKCDECG-KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CCSCCCCSCSSBCSSSC-CBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CcCcCCCCCCEECCCCC-cccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            33456678999999999 99999999999999 9999999999 9999999999999999999966554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-14  Score=114.88  Aligned_cols=62  Identities=35%  Similarity=0.791  Sum_probs=57.6

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      .+.++++|+|.+|+ +.|.....|..|++ |+++++|.|. |++.|.++..|.+|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~-k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQ-ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSS-CCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCC-ceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            44567899999999 99999999999999 9999999999 999999999999999999997764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.50  E-value=3.5e-15  Score=114.82  Aligned_cols=57  Identities=19%  Similarity=0.417  Sum_probs=54.7

Q ss_pred             cccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          317 IKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       317 ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      ||||.|++||          +.|.....|..|+++|+++|||.|.+|+ |.|...++|++|++ |+|++
T Consensus         2 EKpy~C~~C~----------k~F~~~~~L~~H~~~Ht~ekp~~C~~C~-k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCG----------KTYRDASGLSRHRRAHLGYRPRSCPECG-KCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTC----------CEESSHHHHHHHHHHHHTCCCEECTTTC-CEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCC----------CEeCCHHHHHHHHHHhCCCcCeECCCCC-CCcCCHHHHHHHhCccCCCC
Confidence            5999999999          9999999999999999999999999999 99999999999999 99985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.48  E-value=1e-15  Score=125.73  Aligned_cols=79  Identities=23%  Similarity=0.374  Sum_probs=75.4

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhcccc
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKN  347 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~  347 (524)
                      +++|.|.+|++.|.....|..|+++|.++                     ++|.|++|+          +.|.....|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~---------------------~~~~C~~C~----------k~f~~~~~L~~   49 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE---------------------KPFACDICG----------RKFARSDERKR   49 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCC---------------------CCEECTTTC----------CEESSHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCC---------------------CCccCCCCC----------CccCCHHHHHH
Confidence            47899999999999999999999999988                     999999999          99999999999


Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK  379 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r  379 (524)
                      |++.|+. ++|.|..|+ +.|.....|..|++
T Consensus        50 H~~~h~~-~~~~c~~C~-~~f~~~~~L~~H~~   79 (88)
T 1llm_C           50 HRDIQHI-LPILEDKVE-ELLSKNYHLENEVA   79 (88)
T ss_dssp             HHHHHTH-HHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHhCC-CcchHHHHH-HHHHHHhhhHHHHH
Confidence            9999984 899999999 99999999999997

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.3e-14  Score=113.19  Aligned_cols=63  Identities=29%  Similarity=0.576  Sum_probs=59.0

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      +.++|.++++|.|.+|+ +.|.....|++|++ |++++||.|. |++.|.++..|.+|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECG-KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSC-CEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCC-CccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            45678899999999999 99999999999999 9999999999 9999999999999999999753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=3.2e-14  Score=111.61  Aligned_cols=62  Identities=26%  Similarity=0.538  Sum_probs=57.7

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      .|.++++|.|.+|+ +.|.....|++|++ |+++++|.|. |++.|.++..|..|+++|++++|.
T Consensus         3 s~~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECS-YSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSS-CEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            35678999999999 99999999999999 9999999999 999999999999999999997764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=5.9e-14  Score=112.26  Aligned_cols=69  Identities=25%  Similarity=0.445  Sum_probs=55.7

Q ss_pred             cCCCccccCC--CCCccccChhhhhhhhc--ccCCCceecc---CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 009831          353 HCDKSYVCSR--CNTKKFSVIADLKTHEK--HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAG  425 (524)
Q Consensus       353 ~~~Kpy~C~~--C~~K~F~~~s~L~~H~r--Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f  425 (524)
                      +++++|.|..  |+ +.|.....|+.|++  |+++++|.|.   |++.|.++..|..|+++|++   .++|.|++|++.|
T Consensus         3 ~~~~~~~C~~~~C~-~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~---~~~~~C~~C~k~F   78 (79)
T 2dlk_A            3 SGSSGMPCDFPGCG-RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD---TRDYICEFSGPSS   78 (79)
T ss_dssp             SCCSSEECSSTTTC-CEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHT---SCCCSCCSSSCCC
T ss_pred             CCCCCccCCCCCCc-CccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCC---CCCeeCCCCCCCC
Confidence            4567788876  88 88888888888886  8888888886   88888888888888888887   4557788888877

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.6e-14  Score=117.17  Aligned_cols=77  Identities=22%  Similarity=0.406  Sum_probs=68.8

Q ss_pred             hcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCC----CccccCCCCCccccChhhhhhhh
Q 009831          303 LAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCD----KSYVCSRCNTKKFSVIADLKTHE  378 (524)
Q Consensus       303 L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~----Kpy~C~~C~~K~F~~~s~L~~H~  378 (524)
                      |.+|++    +|+++++|.|++|+          +.|.....|..|++.|+.+    ++|.|.+|+ +.|.....|..|+
T Consensus         3 ~~~H~~----~H~~~k~~~C~~C~----------~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~-~~f~~~~~L~~H~   67 (86)
T 1x6h_A            3 SGSSGR----THTGEKPYACSHCD----------KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG-KTFTRRNTMARHA   67 (86)
T ss_dssp             TTCCST----TCCCCCCEECSSSS----------CEESSHHHHHHHHHHTTCSSCCCCCEECSSSC-CEESCHHHHHHHH
T ss_pred             cccccc----eecCCCCCcCCCCC----------CccCCHHHHHHHHHHhcCCcCCCcceECCCCC-ChhCCHHHHHHHH
Confidence            444554    45666999999999          9999999999999988876    799999999 9999999999999


Q ss_pred             c-ccCCCceecc-CCCcc
Q 009831          379 K-HCGKDKWLCS-CGTTF  394 (524)
Q Consensus       379 r-Htgekpy~C~-Cgk~F  394 (524)
                      + |++++++.|. |+..|
T Consensus        68 ~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           68 DNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHCCCCCSCCCCCCCCCC
T ss_pred             HHccCCCCcccCCCCCCC
Confidence            9 9999999999 99876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.4e-14  Score=116.02  Aligned_cols=70  Identities=24%  Similarity=0.522  Sum_probs=65.8

Q ss_pred             CccccccCCC--CCcccCcCcCCccccchhhcccccee-eecCCCccccCC--CCCccccChhhhhhhhc-ccCCCceec
Q 009831          315 MLIKRYSCPY--AGCKRNKDHKKFQPLKTILCVKNHYK-RTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       315 ~~ekpy~C~~--Cgc~~~~~~~~~k~f~~~~~L~~H~~-~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      +++++|.|..  |+          +.|.....|..|++ .|..+++|.|.+  |+ +.|.....|++|++ |++++||.|
T Consensus         3 ~~~~~~~C~~~~C~----------~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   71 (79)
T 2dlk_A            3 SGSSGMPCDFPGCG----------RIFSNRQYLNHHKKYQHIHQKSFSCPEPACG-KSFNFKKHLKEHMKLHSDTRDYIC   71 (79)
T ss_dssp             SCCSSEECSSTTTC----------CEESSHHHHHHHHHHGGGSCCCEECSCTTTC-CEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCCCccCCCCCCc----------CccCCHHHHHHHHHHHhCCCCCeECCCCCCc-CccCCHHHHHHHHHHhCCCCCeeC
Confidence            4568999997  99          99999999999999 799999999999  99 99999999999999 999999999


Q ss_pred             c-CCCccC
Q 009831          389 S-CGTTFS  395 (524)
Q Consensus       389 ~-Cgk~F~  395 (524)
                      . |+++|.
T Consensus        72 ~~C~k~F~   79 (79)
T 2dlk_A           72 EFSGPSSG   79 (79)
T ss_dssp             CSSSCCCC
T ss_pred             CCCCCCCC
Confidence            9 999994

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=7.2e-14  Score=111.67  Aligned_cols=65  Identities=25%  Similarity=0.458  Sum_probs=59.4

Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhc--ccCC-Cceecc-CCCccCChhHHHHHHHhhcC
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK--HCGK-DKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htge-kpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      .|.+|+++|.+++||.|.+|+ +.|.....|.+|++  |.++ ++|.|. |++.|.++..|..|+++|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICH-ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTC-CEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCccccccCCCCCeECCCcC-chhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            367899999999999999999 99999999999986  7765 899999 99999999999999998655

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.43  E-value=2.6e-14  Score=115.38  Aligned_cols=75  Identities=24%  Similarity=0.375  Sum_probs=45.6

Q ss_pred             cccc--CCCCCccccChhhhhhhhc-ccCCCceec--c-CCCccCChhHHHHHHHhhcCCCCCCCCCCCC---CCCCCCC
Q 009831          357 SYVC--SRCNTKKFSVIADLKTHEK-HCGKDKWLC--S-CGTTFSRKDKLFGHIALFQGHTPAIPLDETI---KGLAGPS  427 (524)
Q Consensus       357 py~C--~~C~~K~F~~~s~L~~H~r-Htgekpy~C--~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~---C~~~f~~  427 (524)
                      ||.|  +.|+ +.|.....|..|++ |+++++|.|  . |++.|.+...|..|+++|++      |.|..   |++.|..
T Consensus         1 p~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------~~C~~~~~C~~~f~~   73 (85)
T 2j7j_A            1 MYVCHFENCG-KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG------YPCKKDDSCSFVGKT   73 (85)
T ss_dssp             CEECCSTTCC-CEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS------EECCSCSSCCCEESS
T ss_pred             CccCCCCCCC-cccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC------CCCCCCCCCCCccCC
Confidence            4556  5566 66666666666666 666666666  3 66666666666666666655      45555   6666666


Q ss_pred             Ccccccccccc
Q 009831          428 DRREGNEATSK  438 (524)
Q Consensus       428 ~~~l~~H~~~~  438 (524)
                      ...|..|++.|
T Consensus        74 ~~~l~~H~~~h   84 (85)
T 2j7j_A           74 WTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            66666665544

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=4e-14  Score=119.13  Aligned_cols=75  Identities=19%  Similarity=0.268  Sum_probs=64.8

Q ss_pred             cccchhhccccceeeecCCCccccCCCCCccc-cChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHH-HHhhcCCCC
Q 009831          337 QPLKTILCVKNHYKRTHCDKSYVCSRCNTKKF-SVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGH-IALFQGHTP  412 (524)
Q Consensus       337 k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F-~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H-~r~Htg~kp  412 (524)
                      ..+.....|..|.+.|+.+++|.|++|+ |.| .....|+.|++ | +++||.|. |||.|.++..|..| +++|++ +|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~-k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~-~p   90 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQ-AVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS-LP   90 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTC-SCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC-CS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCC-CCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCC-CC
Confidence            3455566677888889999999999999 999 99999999999 9 99999999 99999999999999 889875 34


Q ss_pred             CC
Q 009831          413 AI  414 (524)
Q Consensus       413 ~k  414 (524)
                      +.
T Consensus        91 ~~   92 (96)
T 2ctd_A           91 SG   92 (96)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.43  E-value=4.1e-14  Score=114.26  Aligned_cols=75  Identities=25%  Similarity=0.455  Sum_probs=47.7

Q ss_pred             ceec--CCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCC--CCcccCcCcCCccccchhhcc
Q 009831          270 THFC--TICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPY--AGCKRNKDHKKFQPLKTILCV  345 (524)
Q Consensus       270 ~~~C--~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~--Cgc~~~~~~~~~k~f~~~~~L  345 (524)
                      +|.|  ++|++.|.....|..|+++|.++                     ++|.|++  |+          +.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~C~~~~C~----------~~f~~~~~l   49 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ---------------------LPYECPHEGCD----------KRFSLPSRL   49 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT---------------------CCEECCSTTCC----------CEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC---------------------CCeeCCCCCCc----------CccCCHHHH
Confidence            4777  77888888888888888777766                     6677766  66          555555555


Q ss_pred             ccceeeecCCCccccCC---CCCccccChhhhhhhhc
Q 009831          346 KNHYKRTHCDKSYVCSR---CNTKKFSVIADLKTHEK  379 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~~---C~~K~F~~~s~L~~H~r  379 (524)
                      ..|++.|++   |.|..   |+ +.|.....|..|++
T Consensus        50 ~~H~~~h~~---~~C~~~~~C~-~~f~~~~~l~~H~~   82 (85)
T 2j7j_A           50 KRHEKVHAG---YPCKKDDSCS-FVGKTWTLYLKHVA   82 (85)
T ss_dssp             HHHHHHHHS---EECCSCSSCC-CEESSHHHHHHHHH
T ss_pred             HHHHHHhCC---CCCCCCCCCC-CccCCHHHHHHHHH
Confidence            555555554   55555   55 55555555555554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=6.1e-14  Score=112.09  Aligned_cols=65  Identities=23%  Similarity=0.437  Sum_probs=61.7

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      .+.++++|.|++|+          +.|.....|..|++.|+++++|.|.+|+ +.|.....|.+|++ |++++||.|
T Consensus        12 ~~~~~~~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECG----------KSFSHSSDLSKHRRTHTGEKPYKCDECG-KAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSC----------CBCSCHHHHHHHHTTTCCSCSEECSSSC-CEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCC----------cccCCHHHHHHHHHHcCCCcCeeCCCCC-CccCCHHHHHHHHHHhCCCCCCCC
Confidence            35567999999999          9999999999999999999999999999 99999999999999 999999998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=5.9e-14  Score=119.68  Aligned_cols=67  Identities=19%  Similarity=0.371  Sum_probs=57.9

Q ss_pred             ecCCCccccCCCCCccccChhhhhhhhc--c---cCCCceecc-CCCccCChhHHHHH-HHhhcCCCCCCCCCCCCCC
Q 009831          352 THCDKSYVCSRCNTKKFSVIADLKTHEK--H---CGKDKWLCS-CGTTFSRKDKLFGH-IALFQGHTPAIPLDETIKG  422 (524)
Q Consensus       352 h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--H---tgekpy~C~-Cgk~F~~ks~L~~H-~r~Htg~kp~k~~~C~~C~  422 (524)
                      ..+++||.|.+|+ +.|.....|++|++  |   ++++||.|. ||++|.+++.|..| +++|+|+   +||.|.++.
T Consensus        13 ~~gekpy~C~~Cg-k~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htge---kpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCT-FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE---ENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCS-CEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTC---CCEEEEECC
T ss_pred             CCCCcCcCCCCCC-CccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCC---CCeeCCccc
Confidence            3578999999999 99999999999985  8   678999999 99999999999999 8999995   556777643

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=113.95  Aligned_cols=63  Identities=17%  Similarity=0.344  Sum_probs=56.7

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHH-HhhcCCC
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHI-ALFQGHT  411 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~-r~Htg~k  411 (524)
                      .+..+...++|.|++|+ |.|.....|++|++ |++++||.|. |+++|.++..|.+|+ ++|+++.
T Consensus        19 ~~~~~~~~~~h~C~~Cg-k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCG-ESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCSSCCCCTTEECTTSC-CEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCCEECCCCC-CCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            45566778899999999 99999999999999 9999999999 999999999999997 5687753

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=103.11  Aligned_cols=55  Identities=27%  Similarity=0.439  Sum_probs=48.9

Q ss_pred             CCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          354 CDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       354 ~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ++++|.|.+|+ +.|.....|..|++ |++++||.|. |++.|.++..|..|+++|++
T Consensus         1 g~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCG-KFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTC-CBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCc-chhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            36899999999 99999999999999 9999999999 99999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.5e-14  Score=120.32  Aligned_cols=79  Identities=16%  Similarity=0.241  Sum_probs=70.5

Q ss_pred             ccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccc-hhhccccceeeecC-CC
Q 009831          279 GFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLK-TILCVKNHYKRTHC-DK  356 (524)
Q Consensus       279 ~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~-~~~~L~~H~~~h~~-~K  356 (524)
                      .+.....+..|+++|.++                     ++|.|++|+          +.|. ....|+.|+++|+. ++
T Consensus         5 s~~~~~~~~~h~~~h~~~---------------------~~~~C~~C~----------k~f~~~~~~L~~H~~~h~~~~~   53 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHER---------------------GEAVCPTCN----------VVTRKTLVGLKKHMEVCQKLQD   53 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTT---------------------SCCCCTTTC----------CCCSSCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHhccC---------------------CCcCCCCCC----------CChhhhHHHHHHHHHHHcCCCC
Confidence            455566677788888776                     999999999          9999 99999999999999 99


Q ss_pred             ccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|.|.+|+ |.|.+...|++|++ |++++|+...
T Consensus        54 ~~~C~~C~-k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           54 ALKCQHCR-KQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             HHSCSSSC-CCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             CEECCCCC-CccCCHHHHHHHHHHHcCCCCCCCC
Confidence            99999999 99999999999999 9999997654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=2.7e-13  Score=104.76  Aligned_cols=59  Identities=22%  Similarity=0.554  Sum_probs=55.3

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc--c-cCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK--H-CGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--H-tgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      +.|.++++|.|+.|+ +.|.....|..|++  | .+++||.|. |++.|.+++.|..|+++|++
T Consensus         3 ~~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCS-RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTC-CEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCc-chhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            578899999999999 99999999999997  6 589999999 99999999999999999976

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.37  E-value=4e-13  Score=100.57  Aligned_cols=54  Identities=24%  Similarity=0.527  Sum_probs=51.6

Q ss_pred             ccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      ||.|.+|+ +.|.....|..|++ |+++++|.|. |++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECG-IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTC-CBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCc-CcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999 99999999999999 9999999999 9999999999999999998864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=4.7e-13  Score=107.05  Aligned_cols=61  Identities=21%  Similarity=0.406  Sum_probs=53.2

Q ss_pred             ecCCCccccCCCCCccccChhhhhhhhc-ccC---CCceecc-CCCccCChhHHHHHH-HhhcCCCCC
Q 009831          352 THCDKSYVCSRCNTKKFSVIADLKTHEK-HCG---KDKWLCS-CGTTFSRKDKLFGHI-ALFQGHTPA  413 (524)
Q Consensus       352 h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htg---ekpy~C~-Cgk~F~~ks~L~~H~-r~Htg~kp~  413 (524)
                      |+++|+|.|.+|+ +.|.....|.+|++ |++   +++|.|. |++.|.++..|.+|+ +.|.++++.
T Consensus         2 h~~~k~~~C~~C~-k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            2 SSGSSGLQCEICG-FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCSCCCEECSSSC-CEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCcCeECCCCC-CeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            6788999999999 99999999999999 886   8999999 999999999999999 456664443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=107.74  Aligned_cols=63  Identities=25%  Similarity=0.452  Sum_probs=59.7

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCce
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKW  386 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy  386 (524)
                      .+.++++|.|++|+          +.|.....|..|++.|+++++|+|.+|+ +.|.....|.+|++ |++++||
T Consensus        11 ~~~~~~~~~C~~C~----------k~f~~~~~l~~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQ----------ASFRYKGNLASHKTVHTGEKPYRCNICG-AQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSS----------CCBSCHHHHHHHHHHHCCCCSEECTTTC-CEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCC----------ceeCCHHHHHHHHHHcCCCCCEECCCCC-chhCCHHHHHHHHHhcCCCCCC
Confidence            35667999999999          9999999999999999999999999999 99999999999999 9999997

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.4e-14  Score=111.49  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             hccccceeeecCCCccccCCCCCccccChhhhhhhhcccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          343 LCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       343 ~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      ..|..|++.|+++++|.|.+|+ +.|.....|..      +++|.|. |++.|.+...|..|+++|+++   ++|.|++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~-k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~---~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCG-IIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGK---KTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSC-CEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCC---CCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCccc-chhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCC---CCCCCCCC
Confidence            3466677777777777777777 77777666655      5667777 777777777777777777663   34555554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=2.3e-13  Score=116.02  Aligned_cols=68  Identities=22%  Similarity=0.346  Sum_probs=61.9

Q ss_pred             CCccccccCCCCCcccCcCcCCccccchhhcccccee-ee---cCCCccccCCCCCccccChhhhhhh-hc-ccCCCcee
Q 009831          314 PMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYK-RT---HCDKSYVCSRCNTKKFSVIADLKTH-EK-HCGKDKWL  387 (524)
Q Consensus       314 h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~-~h---~~~Kpy~C~~C~~K~F~~~s~L~~H-~r-Htgekpy~  387 (524)
                      -++++||.|++||          +.|.....|..|++ .|   .+++||.|.+|+ |.|.....|++| ++ |+|++||.
T Consensus        13 ~~gekpy~C~~Cg----------k~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cg-k~F~~~~~L~~H~~r~Htgekpy~   81 (102)
T 2ghf_A           13 KKVEGGYECKYCT----------FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECN-FLTKRYDALSEHNLKYHPGEENFK   81 (102)
T ss_dssp             CCCCSSEECSSCS----------CEESCHHHHHHHHHHHCSSCCCSCCEEETTTT-EEESSTHHHHTHHHHTSTTCCCEE
T ss_pred             CCCCcCcCCCCCC----------CccCCHHHHHHHHHhhCCCCCCCCCcCCCCCC-cccCCHHHHHHHHHHhcCCCCCee
Confidence            4678999999999          99999999999997 48   568999999999 999999999999 78 99999999


Q ss_pred             cc-CCC
Q 009831          388 CS-CGT  392 (524)
Q Consensus       388 C~-Cgk  392 (524)
                      |. +.+
T Consensus        82 C~~~~~   87 (102)
T 2ghf_A           82 LTMVKR   87 (102)
T ss_dssp             EEECCC
T ss_pred             CCcccC
Confidence            98 543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=8.9e-13  Score=99.79  Aligned_cols=55  Identities=31%  Similarity=0.756  Sum_probs=51.2

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHH-HhhcCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHI-ALFQGHT  411 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~-r~Htg~k  411 (524)
                      |||.|.+|+ +.|.....|..|++ |++++||.|. |++.|.++..|..|+ ++|+++.
T Consensus         1 k~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTC-CCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCc-cccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            589999999 99999999999999 9999999999 999999999999997 6887743

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=4.6e-13  Score=112.62  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             CccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCcccc-chhhccccceeeecCCC
Q 009831          278 KGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPL-KTILCVKNHYKRTHCDK  356 (524)
Q Consensus       278 K~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f-~~~~~L~~H~~~h~~~K  356 (524)
                      ..|.....|..|+++|.++                     ++|.|++|+          +.| .....|+.|+++| +++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~---------------------~~~~C~~C~----------k~F~~~~~~L~~H~~~h-~~k   61 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDK---------------------GSVSCPTCQ----------AVGRKTIEGLKKHMENC-KQE   61 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHT---------------------SCEECTTTC----------SCEESSHHHHHHHHHHH-CCC
T ss_pred             CCCCCchHHHHHHHHhcCC---------------------CCcCCCCCC----------CCcccCHHHHHHHHHHH-CCC
Confidence            4678888999999999887                     999999999          999 8999999999999 999


Q ss_pred             ccccCCCCCccccChhhhhhh-hc-ccCCCceec
Q 009831          357 SYVCSRCNTKKFSVIADLKTH-EK-HCGKDKWLC  388 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H-~r-Htgekpy~C  388 (524)
                      +|.|.+|+ |.|.....|+.| ++ |+++..|.+
T Consensus        62 ~~~C~~Cg-k~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           62 MFTCHHCG-KQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             CCCCSSSC-CCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CeECCCCC-CeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            99999999 999999999999 88 987654443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.6e-13  Score=106.37  Aligned_cols=68  Identities=21%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             hhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-
Q 009831          301 AALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-  379 (524)
Q Consensus       301 ~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-  379 (524)
                      ..|..|++    .|.++++|.|++|+          +.|.....|..       +++|.|.+|+ +.|.....|..|++ 
T Consensus         4 ~~l~~H~~----~h~~~~~~~C~~C~----------k~f~~~~~l~~-------~~~~~C~~C~-~~f~~~~~l~~H~~~   61 (73)
T 2ctu_A            4 GSSGKRQK----IHLGDRSQKCSKCG----------IIFIRRSTLSR-------RKTPMCEKCR-KDSCQEAALNKDEGN   61 (73)
T ss_dssp             CSCCCCCC----CCCCCSEEECSSSC----------CEEECCCCCCC-------SSSCCCHHHH-HTCSCCCSSCCCSSC
T ss_pred             hhHHHHHH----HhCCCCCeeCCccc----------chhCCHHHhCc-------CCCCCCCCCC-hhhcCHHHHHHHHHh
Confidence            44556655    46667999999999          88888777766       8999999999 99999999999999 


Q ss_pred             ccCCCceecc-C
Q 009831          380 HCGKDKWLCS-C  390 (524)
Q Consensus       380 Htgekpy~C~-C  390 (524)
                      |++++||.|. |
T Consensus        62 H~~~~~~~C~~C   73 (73)
T 2ctu_A           62 ESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCSSCCCC
T ss_pred             hcCCCCCCCCCC
Confidence            9999999998 7

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=6e-13  Score=106.24  Aligned_cols=67  Identities=12%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             hhhhhhc-ccCCCceecc-CCCccCChhHHHHHHH-hhcCCCCCCCCCCCCCCCCCCCCccccccccccCCC
Q 009831          373 DLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIA-LFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGS  441 (524)
Q Consensus       373 ~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r-~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~gs  441 (524)
                      .|.+|++ |++++||.|. |++.|.++..|..|++ .|.++  .++|.|++|++.|.....|..|++.+++.
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~--~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN--VAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS--CSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCC--CCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            4778999 9999999999 9999999999999998 56652  36789999999999999999999987764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=8.3e-13  Score=105.56  Aligned_cols=66  Identities=17%  Similarity=0.118  Sum_probs=58.1

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcccccccc-ccCCCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEAT-SKIGSTNFN  445 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~-~~~gs~~~s  445 (524)
                      |+|++||.|. |++.|.++..|..|+++|++....++|.|.+|++.|.....|..|++ .|.+..+..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            7899999999 99999999999999999997656788999999999999999999995 555554443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=1e-12  Score=102.89  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCce
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKW  386 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy  386 (524)
                      .|+++++|.|++|+          +.|.....|+.|++.|+++++|.|.+|+ +.|.....|.+|++ |++++|.
T Consensus         3 s~~~~~~~~C~~C~----------k~f~~~~~L~~H~~~H~~~~~~~C~~C~-~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECS----------YSCSSKAALRIHERIHCTDRPFKCNYCS-FDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSS----------CEESSHHHHHHHHGGGCCSCSEECSSSS-CEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCC----------cccCCHHHHHHHHHHcCCCCCEeCCCCC-CccCCHHHHHHHHHHHhCCCCC
Confidence            46777999999999          9999999999999999999999999999 99999999999999 9999875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=1.2e-12  Score=103.25  Aligned_cols=62  Identities=24%  Similarity=0.402  Sum_probs=58.2

Q ss_pred             CCCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          312 SEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       312 ~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      ++|+++++|.|++|+          +.|.....|+.|++.|+.+++|+|.+|+ +.|.....|++|++ |+++.
T Consensus         7 ~~H~~~k~~~C~~C~----------k~f~~~~~L~~H~~~h~~~~~~~C~~C~-~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECG----------KAFSRSSILVQHQRVHTGEKPYKCLECG-KAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSC----------CEESSHHHHHHHHHGGGCSCCEECSSSC-CEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCC----------CccCCHHHHHHHHHhcCCCCCeECCCCC-cccCCHHHHHHHHHhcCCCC
Confidence            467778999999999          9999999999999999999999999999 99999999999999 98875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=2.9e-12  Score=100.90  Aligned_cols=57  Identities=32%  Similarity=0.665  Sum_probs=52.5

Q ss_pred             eecCCCccccC--CCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhc
Q 009831          351 RTHCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       351 ~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      .|.++++|.|.  .|+ +.|.....|..|++ |+++++|.|. ||+.|.+++.|.+|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~-k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCD-RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBC-CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCC-CccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            45678999997  599 99999999999999 9999999999 9999999999999999885

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.20  E-value=3.8e-12  Score=104.77  Aligned_cols=61  Identities=20%  Similarity=0.373  Sum_probs=56.7

Q ss_pred             CCCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhh-c-ccCCC
Q 009831          313 EPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHE-K-HCGKD  384 (524)
Q Consensus       313 ~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~-r-Htgek  384 (524)
                      .+...++|.|++||          +.|.....|++|+++|+++|||.|.+|+ |.|.+...|++|+ + |++|+
T Consensus        22 ~~~~~~~h~C~~Cg----------k~F~~~~~L~~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           22 LSASAECHLCPVCG----------ESFASKGAQERHLRLLHAAQVFPCKYCP-ATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCCCTTEECTTSC----------CEESSHHHHHHHHHTTSCSSSEECTTSS-CEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCEECCCCC----------CCcCcHHHHhhhhhhccCCCccCCCCCC-CEeCCHHHHHHhCcccCcCCC
Confidence            45566999999999          9999999999999999999999999999 9999999999997 5 99885

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.3e-11  Score=100.48  Aligned_cols=60  Identities=30%  Similarity=0.470  Sum_probs=53.7

Q ss_pred             CccccCCCCCccccChhhhhhhhc--ccCCCc--------eecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK--HCGKDK--------WLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r--Htgekp--------y~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      ..|.|..|+ +.|.....|.+|++  |+++++        |.|. |++.|.++..|..|+++|++++|   |.|+
T Consensus        24 ~~~~C~~C~-k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~---~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCD-RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS---GPSS   94 (95)
T ss_dssp             SSSSCCCCC-CCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC---CSSC
T ss_pred             CCCcccccc-cccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC---CCCC
Confidence            357899999 99999999999997  888888        9999 99999999999999999999655   5554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2e-11  Score=100.94  Aligned_cols=69  Identities=20%  Similarity=0.201  Sum_probs=56.8

Q ss_pred             cceecCCCCCccCChHHHHHHHhh-hCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhcccc
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRG-HGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKN  347 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~-H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~  347 (524)
                      ..|.|.+|++.|.....|.+|+++ |.++                     ++..+..|                      
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~---------------------~~~~~~~c----------------------   60 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGG---------------------PEQNNHVC----------------------   60 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCC---------------------TTCSCCCC----------------------
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCC---------------------CCCCccce----------------------
Confidence            347899999999999999999998 8776                     44333333                      


Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                              ++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus        61 --------~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           61 --------YWEECPREG-KSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             --------CCTTCSSTT-CCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             --------eccCCCCCC-cccCCHHHHHHHHHhcCCCCCCCCC
Confidence                    237899998 99999999999999 9999999984

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.14  E-value=8.4e-12  Score=93.22  Aligned_cols=29  Identities=34%  Similarity=0.721  Sum_probs=16.6

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +++|.|.+|++.|.....|..|+++|.++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   30 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGE   30 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCC
Confidence            35566666666666666666666666555

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=7.7e-12  Score=96.43  Aligned_cols=60  Identities=8%  Similarity=0.072  Sum_probs=54.2

Q ss_pred             hc-ccCCCceecc-CCCccCChhHHHHHHHh-h-cCCCCCCCCCCCCCCCCCCCCccccccccccCC
Q 009831          378 EK-HCGKDKWLCS-CGTTFSRKDKLFGHIAL-F-QGHTPAIPLDETIKGLAGPSDRREGNEATSKIG  440 (524)
Q Consensus       378 ~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~-H-tg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~g  440 (524)
                      ++ |+|++||.|. |++.|.++..|..|+++ | .+   .++|.|++|++.|.....|..|++.+++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~---~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRN---VKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSS---CCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCC---CcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            35 9999999999 99999999999999998 6 45   6778999999999999999999998875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.11  E-value=2.6e-11  Score=90.51  Aligned_cols=27  Identities=33%  Similarity=0.644  Sum_probs=18.4

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +|.|.+|++.|.....|..|+++|.++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~   27 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDV   27 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCC
Confidence            466777777777777777777666655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.7e-11  Score=84.87  Aligned_cols=43  Identities=19%  Similarity=0.519  Sum_probs=33.4

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQ---KPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCC---CCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            5777 8888888888 888888888888888888874   45666665

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.09  E-value=4.3e-11  Score=88.94  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=44.1

Q ss_pred             ccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          366 KKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       366 K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |.|.....|..|++ |++++||.|. ||+.|.+++.|..|+++|+|++|+
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            78999999999999 9999999999 999999999999999999997765

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.3e-11  Score=85.15  Aligned_cols=43  Identities=19%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. ||+.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE---KSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHST---TSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCC---CCCCCCCC
Confidence            5777 7888888888 888888888888888888774   44556555

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.4e-11  Score=84.62  Aligned_cols=43  Identities=21%  Similarity=0.532  Sum_probs=33.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSS---SCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCC---CCCCCCCC
Confidence            5777 8888888888 888888888888888888874   45667665

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.08  E-value=6.2e-11  Score=84.69  Aligned_cols=43  Identities=26%  Similarity=0.576  Sum_probs=29.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCC---CCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777774   44556554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.8e-11  Score=84.46  Aligned_cols=43  Identities=23%  Similarity=0.536  Sum_probs=26.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCC---CCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCC---CCCCCCCC
Confidence            3556 6666666666 666666666666666666663   34455544

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.08  E-value=7.5e-11  Score=84.34  Aligned_cols=43  Identities=23%  Similarity=0.522  Sum_probs=29.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSC---CCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777763   44555554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.7e-11  Score=84.50  Aligned_cols=43  Identities=26%  Similarity=0.569  Sum_probs=31.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSC---CSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            5777 7777778887 888888888888887777774   44556554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.7e-11  Score=84.50  Aligned_cols=43  Identities=21%  Similarity=0.585  Sum_probs=33.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCS---SCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCC---CCCCCCCC
Confidence            5777 8888888888 888888888888888888874   45566665

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=7.6e-11  Score=84.12  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCC---CTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            4777 8888888888 888888888888888888774   44556655

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.4e-11  Score=84.27  Aligned_cols=43  Identities=28%  Similarity=0.553  Sum_probs=31.6

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. ||+.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTS---CCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4777 7778888888 888888888888888887774   44556655

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.07  E-value=6.8e-11  Score=84.36  Aligned_cols=43  Identities=28%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGV---KPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSC---CCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777776663   34455554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.9e-11  Score=84.13  Aligned_cols=43  Identities=26%  Similarity=0.519  Sum_probs=29.7

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGK---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSC---CCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCC---CCCCCCCC
Confidence            4667 7777777777 777777777777777777774   34555554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.7e-11  Score=84.18  Aligned_cols=43  Identities=23%  Similarity=0.493  Sum_probs=32.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCC---SCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            5777 8888888888 888888888888888888774   44556655

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.6e-11  Score=84.30  Aligned_cols=43  Identities=26%  Similarity=0.525  Sum_probs=27.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCS---SCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            3666 6777777777 777777777777777776663   34555554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.07  E-value=7.3e-11  Score=84.29  Aligned_cols=34  Identities=26%  Similarity=0.574  Sum_probs=20.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG   37 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSS
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCC
Confidence            3555 6666666666 66666666666666666655

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.4e-11  Score=84.28  Aligned_cols=43  Identities=23%  Similarity=0.514  Sum_probs=29.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCC---CCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777663   44556554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7.8e-11  Score=84.04  Aligned_cols=43  Identities=28%  Similarity=0.525  Sum_probs=28.4

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSS---SCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777663   34455544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=7e-11  Score=84.40  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECG-KVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTC-CBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCC-CeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.06  E-value=6.7e-11  Score=84.52  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECD-MCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSC-CCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCC-cccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=9.8e-11  Score=82.80  Aligned_cols=42  Identities=24%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. ||+.|.+++.|..|+++|+++   ++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE---KPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSS---CSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            667 8888888888 888888888888888888874   44566655

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.3e-11  Score=84.01  Aligned_cols=43  Identities=19%  Similarity=0.460  Sum_probs=28.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCC---CSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777663   34455554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=3.4e-11  Score=94.70  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             hhhhhhhc--ccCCCceecc---CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 009831          372 ADLKTHEK--HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKI  439 (524)
Q Consensus       372 s~L~~H~r--Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~  439 (524)
                      ..|..|.+  |.++++|.|.   |++.|..+..|..|+++|++   .++|.|++|++.|.....|..|++.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG---QKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ----CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHC---CCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCC---CCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            45677876  9999999994   99999999999999999998   566899999999999999999998874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.9e-11  Score=83.75  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. ||+.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDD---KHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSC---CCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            4677 7777777777 777777777777777777774   44556554

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.06  E-value=6e-11  Score=84.64  Aligned_cols=43  Identities=30%  Similarity=0.396  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCA-KTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSS-CEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCC-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            688999999999999999 99999999999999 9999999998 7

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=9.8e-11  Score=83.63  Aligned_cols=43  Identities=26%  Similarity=0.510  Sum_probs=30.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGY---RPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCC---CSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCC---CCCCCCCC
Confidence            4677 7777777777 777777777777777777774   44556555

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.3e-11  Score=83.90  Aligned_cols=43  Identities=23%  Similarity=0.454  Sum_probs=25.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE---NPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTS---CCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            3566 6666666666 666666666666666666663   33445444

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=7.4e-11  Score=92.57  Aligned_cols=57  Identities=30%  Similarity=0.598  Sum_probs=51.6

Q ss_pred             eeecCCCccccCC--CCCccccChhhhhhhhc-ccCCCceec--c-CCCccCChhHHHHHHHhh
Q 009831          350 KRTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKDKWLC--S-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       350 ~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgekpy~C--~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      ..+...++|.|..  |+ +.|.....|++|++ |++++||.|  . |++.|.++..|.+|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCG-KTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTC-CEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCc-cccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445568899988  99 99999999999999 999999999  5 999999999999999886

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.06  E-value=1e-10  Score=83.56  Aligned_cols=42  Identities=29%  Similarity=0.510  Sum_probs=28.2

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. |++.|.++..|.+|+++|+++   ++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCC---SSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            666 7777777777 777777777777777777763   34555554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8e-11  Score=84.08  Aligned_cols=43  Identities=21%  Similarity=0.490  Sum_probs=30.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGG---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSC---CCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCC---CCCCCCCC
Confidence            4667 7777777777 777777777777777777774   44556554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=7.9e-11  Score=84.02  Aligned_cols=43  Identities=21%  Similarity=0.508  Sum_probs=27.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV---KPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCC---CSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4666 6777777777 777777777777777776663   34455554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=83.47  Aligned_cols=43  Identities=23%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. ||+.|.++..|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGE---RHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCC---SSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777663   34455544

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.8e-11  Score=85.39  Aligned_cols=44  Identities=23%  Similarity=0.301  Sum_probs=41.5

Q ss_pred             ccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          346 KNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      ++|+++|.++++|.|++|+ +.|.....|..|++ |++++||.|. |
T Consensus         1 ~~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECG-KNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSC-CEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccC-cccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3688999999999999999 99999999999999 9999999998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.3e-11  Score=83.75  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=28.4

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.+++.|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCC---CCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777663   34455554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.05  E-value=6.7e-11  Score=84.60  Aligned_cols=43  Identities=28%  Similarity=0.428  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECG-KAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSC-CBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=7.3e-11  Score=84.29  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICG-KSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSC-CCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=7.8e-11  Score=84.06  Aligned_cols=43  Identities=26%  Similarity=0.369  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECG-KSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTC-CBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=83.32  Aligned_cols=43  Identities=21%  Similarity=0.526  Sum_probs=29.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCC---SCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777764   34555554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.05  E-value=1.1e-10  Score=83.21  Aligned_cols=43  Identities=21%  Similarity=0.468  Sum_probs=29.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGE---KPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSC---CCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777764   34555554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=7.1e-11  Score=84.47  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=26.4

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCS---CCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            4666 6666666666 666666666666666666663   33445544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.6e-11  Score=83.66  Aligned_cols=43  Identities=23%  Similarity=0.596  Sum_probs=29.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|.+|+++|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTS---CCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4677 7777777777 777777777777777777764   34555543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=9.3e-11  Score=83.83  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=42.1

Q ss_pred             ccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          346 KNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      ++|+++|+++++|.|++|+ +.|.....|.+|++ |++++||.|. |
T Consensus         1 ~~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            1 GSSGSSGSSTKSHQCHECG-RGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSCSEECSSSC-CEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCcCCCCCCCCeECCcCC-CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3689999999999999999 99999999999999 9999999998 7

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=83.23  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=25.3

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. |++.|.++..|..|+++|+++   +||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGE---KTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSC---CCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCC---CCCCCCCC
Confidence            555 6666666666 666666666666666666663   33445444

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=83.09  Aligned_cols=42  Identities=21%  Similarity=0.501  Sum_probs=27.7

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |+++++|.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTC---CCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            666 7777777777 777777777777777777663   34455554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.04  E-value=7.2e-11  Score=84.33  Aligned_cols=43  Identities=30%  Similarity=0.429  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ |.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECG-KVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSC-CEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCc-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.7e-11  Score=84.51  Aligned_cols=43  Identities=28%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|++|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICG-KSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSC-CEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCC-cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            688999999999999999 99999999999999 9999999998 7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.8e-11  Score=84.15  Aligned_cols=43  Identities=33%  Similarity=0.440  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCG-KAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSC-CEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcC-CccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.6e-11  Score=84.11  Aligned_cols=43  Identities=30%  Similarity=0.395  Sum_probs=40.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECG-KSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTT-BCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCC-CccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.6e-11  Score=84.29  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=40.7

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ |.|.+...|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECG-KAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSC-CEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCC-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=9.9e-11  Score=83.61  Aligned_cols=43  Identities=21%  Similarity=0.536  Sum_probs=29.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|.+|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGE---KPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCC---CCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            4666 7777777777 777777777777777777764   44555554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.1e-10  Score=83.30  Aligned_cols=43  Identities=19%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGE---KCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCS---CSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            4666 6666666666 666666666666666666663   33445544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.2e-10  Score=83.14  Aligned_cols=42  Identities=24%  Similarity=0.412  Sum_probs=24.6

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. |++.|.++..|.+|+++|+++   ++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTC---CCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            555 6666666666 666666666666666666653   33445444

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.8e-11  Score=84.05  Aligned_cols=43  Identities=30%  Similarity=0.492  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCG-KAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSC-CEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCC-hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            688999999999999999 99999999999999 9999999998 7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=8.1e-11  Score=83.96  Aligned_cols=43  Identities=28%  Similarity=0.426  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECG-KNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTC-CEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcC-cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.5e-11  Score=84.16  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|+|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTT-EECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcC-hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1e-10  Score=83.45  Aligned_cols=34  Identities=29%  Similarity=0.663  Sum_probs=20.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG   37 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTT
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3555 6666666666 66666666666666666555

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.9e-11  Score=83.50  Aligned_cols=43  Identities=28%  Similarity=0.452  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECG-KAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTC-CCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCC-CccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=8.2e-11  Score=84.03  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|++.|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECG-KVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTC-CEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.6e-11  Score=83.58  Aligned_cols=43  Identities=30%  Similarity=0.457  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCG-KSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSC-CBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccC-hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.5e-11  Score=84.24  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|++.|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECG-KAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSC-CEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCC-cccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=8e-11  Score=83.98  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ |.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECG-KAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSC-CEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCC-CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.2e-10  Score=83.33  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=40.5

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCG-KGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSC-CBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccC-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.4e-11  Score=84.28  Aligned_cols=43  Identities=26%  Similarity=0.456  Sum_probs=40.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECG-KAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSC-CEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCC-hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            688999999999999999 99999999999999 9999999998 6

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1e-10  Score=90.58  Aligned_cols=53  Identities=23%  Similarity=0.565  Sum_probs=32.4

Q ss_pred             CCccccCCCCCccccChhhhhhhhcccCCCceecc--CCCccCChhHHHHHHHhhcC
Q 009831          355 DKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS--CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       355 ~Kpy~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~--Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ++||.|.+|+ +.|. ...|+.|++-++++||.|.  ||+.|..++.|..|+++|..
T Consensus         8 ~~~~~C~~C~-k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            8 KRTQPCTYCT-KEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCEEECSSSC-CEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCeeccccC-CccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            4556666666 6666 6666666544556666665  66666666666666666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.1e-11  Score=83.80  Aligned_cols=34  Identities=21%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG   37 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSS
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCC
Confidence            3555 5555555555 55555555555555555555

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=83.01  Aligned_cols=42  Identities=29%  Similarity=0.513  Sum_probs=24.9

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. |++.|.+++.|.+|+++|+++   ++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE---KPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCS---CSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCC---CCCCCCCC
Confidence            555 6666666666 666666666666666666653   33445444

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=83.06  Aligned_cols=43  Identities=28%  Similarity=0.501  Sum_probs=31.5

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +|++ |+++++|.|. |++.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSC---CCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCC---CCCCCCCC
Confidence            4677 7778888887 888888888888888887774   44556655

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1e-10  Score=83.53  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ |.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCG-KAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTC-CCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCC-ceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.2e-11  Score=83.77  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=40.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECG-KVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSC-CEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCC-chhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.4e-10  Score=82.97  Aligned_cols=42  Identities=21%  Similarity=0.446  Sum_probs=28.3

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. |++.|.+++.|.+|+++|+++   ++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ---RPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSC---CCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            566 7777777777 777777777777777777764   34555554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.8e-11  Score=83.62  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=41.6

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECG-KSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTC-CEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            689999999999999999 99999999999999 9999999998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7.6e-11  Score=84.11  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECG-KSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSC-CEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCC-hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7e-11  Score=84.39  Aligned_cols=43  Identities=33%  Similarity=0.462  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECG-KAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSC-CEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=7e-11  Score=84.39  Aligned_cols=43  Identities=26%  Similarity=0.391  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSC-CEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCC-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.02  E-value=1.6e-10  Score=82.59  Aligned_cols=43  Identities=23%  Similarity=0.421  Sum_probs=29.7

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTRE---KPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCS---SCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            3666 7777777777 777777777777777777774   34555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.2e-11  Score=84.02  Aligned_cols=43  Identities=26%  Similarity=0.383  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECG-KVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSC-CEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCC-CccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=82.35  Aligned_cols=43  Identities=19%  Similarity=0.459  Sum_probs=30.0

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.+++.|..|+++|+++   ++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGE---KPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCS---SCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCC---CCCCCCCC
Confidence            3666 7777777777 777777777777777777774   44556554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.02  E-value=1e-10  Score=83.63  Aligned_cols=43  Identities=28%  Similarity=0.392  Sum_probs=40.6

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ |.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECG-KGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSC-CCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488899999999999999 99999999999999 9999999998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.4e-11  Score=83.97  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECG-KRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTT-EEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            688899999999999999 99999999999999 9999999998 7

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=8.8e-11  Score=83.88  Aligned_cols=43  Identities=28%  Similarity=0.392  Sum_probs=41.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|++.|+++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECG-KAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSC-CEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCC-CeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.02  E-value=1.1e-10  Score=83.28  Aligned_cols=43  Identities=26%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECG-KSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSC-CEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccc-cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.9e-10  Score=82.06  Aligned_cols=43  Identities=19%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.+++.|..|+++|++++   +|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k---~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK---NSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCS---CCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCC---CCCCCCC
Confidence            4677 7788888888 8888888888888888877744   4556554

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=83.20  Aligned_cols=43  Identities=30%  Similarity=0.373  Sum_probs=40.5

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|++|+ +.|.+...|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECG-KAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSC-CBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccC-hhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=83.37  Aligned_cols=43  Identities=30%  Similarity=0.393  Sum_probs=40.5

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|++|+ |.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECG-KGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSC-CEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCcc-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488899999999999999 99999999999999 9999999998 7

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.02  E-value=4.3e-11  Score=91.89  Aligned_cols=53  Identities=13%  Similarity=0.389  Sum_probs=35.4

Q ss_pred             cccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHH
Q 009831          345 VKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLF  401 (524)
Q Consensus       345 L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~  401 (524)
                      |+.|+++|++++||.|++|+ +.|.....|.   + |++++||.|. ||+.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~-k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCS-STFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSC-CEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCC-chhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            45566667777777777777 7776666665   5 7777777777 777776655443

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=8.9e-11  Score=83.01  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=39.6

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      |+++|.++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         1 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCE-KAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSS-CEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCC-cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999 99999999999999 9999999998 7

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.01  E-value=7.6e-11  Score=88.98  Aligned_cols=56  Identities=27%  Similarity=0.549  Sum_probs=52.3

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCCCccccChhhhhhhh-c-ccCCC
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHE-K-HCGKD  384 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~-r-Htgek  384 (524)
                      +||.|++|+          +.|.....|..|++.|+++++|.|.+|+ +.|.....|.+|+ + |+++.
T Consensus         1 k~~~C~~C~----------~~f~~~~~l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCT----------RAFARQEHLKRHYRSHTNEKPYPCGLCN-RAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTC----------CCBSCHHHHHHHHHTTTSSCSEECTTTC-CEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCc----------cccCCHHHHHHHHHHhCCCCCccCCCCC-CccCCHHHHHHHHHHHcCCcC
Confidence            589999999          9999999999999999999999999999 9999999999997 5 88763

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=8e-11  Score=84.08  Aligned_cols=43  Identities=26%  Similarity=0.447  Sum_probs=40.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ |.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCG-KAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTC-CEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCC-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.2e-10  Score=81.88  Aligned_cols=43  Identities=21%  Similarity=0.516  Sum_probs=31.7

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |+++++|.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCC---CSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            4677 8888888888 888888888888888888774   44566654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=82.77  Aligned_cols=42  Identities=21%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      |++ |++++||.|. |++.|.++..|.+|+++|+++   ++|.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGE---RPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSC---CSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCC---CCCCCCCC
Confidence            555 6666666666 666666666666666666653   33445444

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.2e-10  Score=83.11  Aligned_cols=43  Identities=30%  Similarity=0.437  Sum_probs=40.7

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECG-KAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSC-CEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999997 5

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.1e-10  Score=81.96  Aligned_cols=43  Identities=19%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGE---KLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCC---CCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCC---CCCCCCCC
Confidence            3667 7777777777 777777777777787777774   34556554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.2e-10  Score=83.24  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=40.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCG-KGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTT-EEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCC-CccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=82.80  Aligned_cols=43  Identities=26%  Similarity=0.293  Sum_probs=40.2

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|++|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCE-KSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSS-CEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999 99999999999999 9999999998 7

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1e-10  Score=83.51  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|+++++|.|.+|+ +.|.....|+.|++ |++++||.|. |
T Consensus         2 ~h~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECG-KTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTT-EEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCC-cccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.3e-10  Score=83.15  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ |.|.+...|++|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECG-KAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTT-BCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.5e-10  Score=82.60  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECG-KGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSC-CEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCC-CcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.5e-10  Score=82.61  Aligned_cols=43  Identities=23%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|++|+ +.|.....|.+|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECG-EIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTC-CEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccC-hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.6e-10  Score=81.59  Aligned_cols=43  Identities=23%  Similarity=0.481  Sum_probs=33.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHH-hhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIA-LFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r-~Htg~kp~k~~~C~~C  421 (524)
                      .|++ |++++||.|. |++.|.++..|..|++ +|+++   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~---k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE---KPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTS---CSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCC---CCCCCCCC
Confidence            4777 8888888888 8888888888888888 88874   45666665

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.97  E-value=3.2e-10  Score=80.96  Aligned_cols=41  Identities=24%  Similarity=0.543  Sum_probs=31.6

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGE---KPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTS---CSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCC---CCCCCC
Confidence            4777 8888888888 888888888888888888874   445565

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=80.60  Aligned_cols=41  Identities=24%  Similarity=0.514  Sum_probs=31.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGE---KPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCC---SCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCC---CCCCCC
Confidence            5777 8888888888 888888888888888888874   445565

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.4e-10  Score=80.73  Aligned_cols=41  Identities=22%  Similarity=0.488  Sum_probs=31.0

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~---~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE---KPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCC---CCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCC---CCCCCC
Confidence            5777 8888888888 888888888888888888774   445555

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.1e-10  Score=80.42  Aligned_cols=41  Identities=24%  Similarity=0.520  Sum_probs=30.5

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++   ||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k---~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEK---PSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSS---CCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCC---CCCCC
Confidence            4777 8888888888 8888888888888888887744   45554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.8e-10  Score=82.26  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=40.3

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECG-KGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSC-CEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccC-chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            478889999999999999 99999999999999 9999999998 7

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.3e-10  Score=80.88  Aligned_cols=41  Identities=29%  Similarity=0.622  Sum_probs=27.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGE---KPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCC---CCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCC---CCCCCC
Confidence            4666 7777777777 777777777777777777663   344454

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4e-10  Score=80.27  Aligned_cols=42  Identities=21%  Similarity=0.499  Sum_probs=33.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETI  420 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~  420 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++   +||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE---KPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSC---CCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCC---CCCCCCC
Confidence            4778 8888888888 888888888888888888884   4556653

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.9e-10  Score=80.54  Aligned_cols=35  Identities=23%  Similarity=0.639  Sum_probs=23.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE   38 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCC
Confidence            4666 6666666666 666666666666666666663

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.9e-10  Score=80.34  Aligned_cols=41  Identities=27%  Similarity=0.611  Sum_probs=27.3

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |+++++|.|. |++.|.++..|..|+++|++++   ||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k---~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGEN---PSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSC---CCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCC---CCCCC
Confidence            4666 7777777777 7777777777777777776643   34454

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4e-10  Score=80.26  Aligned_cols=41  Identities=24%  Similarity=0.503  Sum_probs=30.6

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++   ||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k---~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEK---PSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSS---SSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCC---CCCCC
Confidence            4777 8888888888 8888888888888888887744   45554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=2.9e-10  Score=84.41  Aligned_cols=45  Identities=29%  Similarity=0.476  Sum_probs=25.9

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHH-hhcCCCCCCCCCCCCCCCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIA-LFQGHTPAIPLDETIKGLAGPS  427 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r-~Htg~kp~k~~~C~~C~~~f~~  427 (524)
                      |++++||.|. |++.|.++..|.+|++ +|++   .++|.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~---~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS---ERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCC---CCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCC---CCCccCCCCCCCCCC
Confidence            4555666666 6666666666666654 5555   344555666666543

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=80.76  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=40.1

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECG-KRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSC-CCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCC-cccCCHHHHHHHHHhcCCCCCCCCC
Confidence            688999999999999999 99999999999999 9999999996

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.4e-10  Score=78.95  Aligned_cols=40  Identities=28%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      |+++|.++++|.|++|+ +.|.....|.+|++ |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCG-KAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTT-CCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCcc-chhCCHHHHHHHHHHhCCCCCCCC
Confidence            45555555555555555 55555555555555 555555555

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=81.55  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=40.4

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECG-KAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSC-CEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCC-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999997 5

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.9e-10  Score=80.44  Aligned_cols=35  Identities=29%  Similarity=0.621  Sum_probs=22.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGE   38 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC
Confidence            4566 6666666666 666666666666666666663

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=6.8e-10  Score=82.41  Aligned_cols=46  Identities=28%  Similarity=0.448  Sum_probs=42.4

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc--ccCCCceecc-CCCccCCh
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK--HCGKDKWLCS-CGTTFSRK  397 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htgekpy~C~-Cgk~F~~k  397 (524)
                      .|..+++|.|.+|+ +.|.....|++|++  |++++||.|. |++.|.++
T Consensus         6 ~~~~~k~~~C~~C~-k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQSCG-KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSSSC-CEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCeECCCCC-cccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            46788999999999 99999999999984  9999999999 99999863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.8e-10  Score=80.47  Aligned_cols=35  Identities=23%  Similarity=0.646  Sum_probs=22.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE   38 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCC
Confidence            3555 6666666666 666666666666666666663

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.4e-10  Score=80.04  Aligned_cols=41  Identities=24%  Similarity=0.598  Sum_probs=27.4

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   +||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGE---KPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSC---CSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCC---CCcCCC
Confidence            4666 7777777777 777777777777777777664   344454

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.4e-10  Score=79.66  Aligned_cols=41  Identities=27%  Similarity=0.553  Sum_probs=29.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      .|++ |+++++|.|. |++.|.++..|..|+++|+++   ++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGE---KPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSC---CCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCC---CCCCCC
Confidence            4677 7777777777 777777777777777777774   345554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.7e-10  Score=81.39  Aligned_cols=36  Identities=31%  Similarity=0.599  Sum_probs=24.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGER   39 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCC
Confidence            4666 7777777777 7777777777777777776643

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.7e-10  Score=80.53  Aligned_cols=42  Identities=26%  Similarity=0.394  Sum_probs=40.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSC-CBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCC-cccCCHHHHHHHHHhhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.9e-10  Score=80.43  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECG-KAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSC-CCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.4e-10  Score=80.04  Aligned_cols=41  Identities=24%  Similarity=0.576  Sum_probs=27.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++   ++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE---KPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSC---CSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCC---CCCCCC
Confidence            4666 7777777777 777777777777777777663   344454

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.94  E-value=5.6e-10  Score=77.91  Aligned_cols=36  Identities=33%  Similarity=0.724  Sum_probs=24.3

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      |++ |++++||.|. |++.|.+++.|..|+++|++++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            556 6777777777 77777777777777777766433

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.8e-10  Score=79.50  Aligned_cols=40  Identities=28%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      |+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECG-KAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTC-CCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCC-CccCCHHHHHHHhhhcCCCCCCCC
Confidence            44444444444444444 44444444444444 444444444

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.6e-10  Score=80.06  Aligned_cols=35  Identities=29%  Similarity=0.699  Sum_probs=22.7

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGE   38 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCC
Confidence            3566 6666666666 666666666666666666663

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.8e-10  Score=80.04  Aligned_cols=41  Identities=20%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++   +|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~---~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET---LSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCC---SSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCC---CCCCC
Confidence            5777 8888888888 8888888888888888887744   45554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.2e-10  Score=80.25  Aligned_cols=35  Identities=23%  Similarity=0.623  Sum_probs=22.0

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGE   38 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCC
Confidence            3555 6666666666 666666666666666666653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.93  E-value=3.4e-10  Score=79.02  Aligned_cols=41  Identities=24%  Similarity=0.481  Sum_probs=38.6

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      |+++|+++++|.|.+|+ +.|.+...|.+|++ |++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECG-KAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSC-CEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcC-hhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67889999999999999 99999999999999 9999999995

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.8e-10  Score=79.63  Aligned_cols=41  Identities=24%  Similarity=0.520  Sum_probs=29.7

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|++++   +|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k---~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEK---PSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSC---CCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCC---CCCCC
Confidence            4677 7777777777 7788877777888877777743   45554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.6e-10  Score=80.07  Aligned_cols=35  Identities=23%  Similarity=0.594  Sum_probs=22.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE   38 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCS
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCC
Confidence            4566 6666666666 666666666666666666663

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.9e-10  Score=88.96  Aligned_cols=59  Identities=17%  Similarity=0.295  Sum_probs=54.4

Q ss_pred             CCccccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccC-CCCCccccChhhhhhhhc-ccCCCc
Q 009831          314 PMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCS-RCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       314 h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~-~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      ..+++||.|++|+          +.|. ...|+.|++. ++++||.|+ .|+ +.|.....|..|++ |...++
T Consensus         5 ~C~~~~~~C~~C~----------k~f~-~~~L~~H~~~-~~~~p~~C~~~C~-k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCT----------KEFV-FDTIQSHQYQ-CPRLPVACPNQCG-VGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSC----------CEEE-HHHHHHHHHH-CSSSEEECTTCCS-CCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccC----------CccC-HHHHHHHHHH-cCCcCccCCcccC-cccccHHHHHHHHHhhcccCc
Confidence            3456999999999          9999 9999999998 999999999 999 99999999999999 988775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4e-10  Score=80.37  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSC-CCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCC-cccCChhHHHHHhHhcCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.5e-10  Score=80.12  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECG-KVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTC-CBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.5e-10  Score=80.03  Aligned_cols=42  Identities=29%  Similarity=0.467  Sum_probs=40.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|.++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCG-KSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSC-CCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCC-chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.3e-10  Score=80.32  Aligned_cols=35  Identities=26%  Similarity=0.575  Sum_probs=22.0

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE   38 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSS
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC
Confidence            3555 6666666666 666666666666666666663

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.1e-10  Score=79.92  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=40.4

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCG-KEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSC-CBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.2e-10  Score=80.24  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=40.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECG-KAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTT-CCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.7e-10  Score=80.64  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=40.1

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|+++++|+|.+|+ |.|.....|+.|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECG-KAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSC-CEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.5e-10  Score=80.69  Aligned_cols=42  Identities=31%  Similarity=0.453  Sum_probs=40.1

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ +.|.....|.+|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCS-KAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSC-CEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688999999999999999 99999999999999 9999999996

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.1e-10  Score=80.23  Aligned_cols=42  Identities=26%  Similarity=0.475  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|.++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECG-KSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSC-CEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCC-hhhCChHHHHHHHHhcCCCCCcCCC
Confidence            588999999999999999 99999999999999 9999999996

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.3e-10  Score=78.39  Aligned_cols=35  Identities=23%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |++ |++++||.|. |++.|.+++.|.+|+++|++++
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   37 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS   37 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCC
Confidence            455 6666666666 6666666666666666666643

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.92  E-value=1.7e-10  Score=88.47  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             hhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcccccc
Q 009831          374 LKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNE  434 (524)
Q Consensus       374 L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H  434 (524)
                      |..|++ |+|++||.|. ||+.|.+...|.   ++|++   .++|.|++|++.|.....+..+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~---~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPM---TGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETT---TTEEBCSSSCCBCEECTTCSCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCC---CCCEECCCCCCccccCcccccc
Confidence            678999 9999999999 999999999887   88988   5678999999999877665543

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.7e-10  Score=79.58  Aligned_cols=37  Identities=22%  Similarity=0.495  Sum_probs=25.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            4666 7777777777 77777777777777777776443

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6.6e-10  Score=78.25  Aligned_cols=42  Identities=24%  Similarity=0.488  Sum_probs=40.3

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|.++++|.|.+|+ +.|.....|.+|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQ-KAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTC-CEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCC-cccCCHhHHHHHHHHhCCCCCCCCC
Confidence            689999999999999999 99999999999999 9999999995

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.3e-10  Score=79.41  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=22.6

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKS   39 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            4556 6666666666 6666666666666666666643

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=3.8e-10  Score=80.58  Aligned_cols=42  Identities=24%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|+++++|+|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECG-KAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSC-CEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCC-CccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.91  E-value=3.6e-10  Score=80.72  Aligned_cols=42  Identities=29%  Similarity=0.513  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECG-KSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSS-CEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.8e-10  Score=79.69  Aligned_cols=33  Identities=24%  Similarity=0.606  Sum_probs=20.4

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++ |++++||.|. |++.|.++..|.+|+++|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG   37 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCC
Confidence            455 6666666666 66666666666666666655

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.6e-10  Score=79.95  Aligned_cols=42  Identities=29%  Similarity=0.481  Sum_probs=40.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECG-KAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSC-CEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCC-CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=7.5e-10  Score=78.92  Aligned_cols=42  Identities=19%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      +++ |+++++|.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGE---KPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSS---CCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCC---CCCCCCCC
Confidence            345 6777777777 777777777777777777663   34555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.2e-10  Score=76.93  Aligned_cols=41  Identities=27%  Similarity=0.400  Sum_probs=39.1

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      |+++|.+++||.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECK-ETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTC-CBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCC-CccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67889999999999999 99999999999999 9999999994

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.8e-10  Score=79.96  Aligned_cols=42  Identities=26%  Similarity=0.418  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECG-KAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSC-CEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCC-cccCCHHHHHHHHhHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.9e-10  Score=80.35  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECG-KAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSC-CEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccC-ChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.4e-10  Score=79.78  Aligned_cols=41  Identities=24%  Similarity=0.591  Sum_probs=29.6

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++   +|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k---~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREK---SSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTT---CCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCC---CCCCC
Confidence            4677 7777777777 7777777777777777777743   44554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=4.4e-10  Score=79.38  Aligned_cols=36  Identities=19%  Similarity=0.499  Sum_probs=23.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS   39 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCC
Confidence            4566 6666666666 6666666666666666666643

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.4e-10  Score=80.08  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=39.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQ-KAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSC-CEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999995

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.2e-10  Score=79.88  Aligned_cols=35  Identities=26%  Similarity=0.482  Sum_probs=23.0

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |++ |++++||.|. |++.|.++..|.+|+++|++++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGER   39 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCC
Confidence            566 6666666666 6666666666666666666643

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=7.8e-10  Score=78.07  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=40.3

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|.+++||.|.+|+ +.|.....|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCD-RVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSS-CEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCC-chhCCHHHHHHHhHhcCCCCCCCCC
Confidence            689999999999999999 99999999999999 9999999994

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=8.6e-10  Score=78.69  Aligned_cols=42  Identities=29%  Similarity=0.463  Sum_probs=40.2

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|+|.+|+ +.|.....|++|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECR-KTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSC-CCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcC-chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            488999999999999999 99999999999999 9999999996

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.6e-10  Score=79.19  Aligned_cols=34  Identities=35%  Similarity=0.743  Sum_probs=19.1

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQ   38 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSS
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCC
Confidence            555 5555555555 555555555555555555553

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.9e-10  Score=79.20  Aligned_cols=43  Identities=28%  Similarity=0.447  Sum_probs=40.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceeccC
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCSC  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~C  390 (524)
                      +|+++|+++++|+|.+|+ +.|.....|++|++ |++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCG-KAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSC-CEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccC-CccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            689999999999999999 99999999999999 99999999973

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.2e-10  Score=77.98  Aligned_cols=39  Identities=31%  Similarity=0.642  Sum_probs=35.6

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|++++|++
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            4888 9999999999 9999999999999999999966554

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=8.1e-10  Score=77.97  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=40.7

Q ss_pred             ccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          346 KNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +.|++.|.++++|.|.+|+ +.|.....|..|++ |++++||.|+
T Consensus         1 ~~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            1 GSSGSSGHTRKRYECSKCQ-ATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCCSCCCCCSSEECTTTC-CEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCcccccCCCCCeECCCCC-CccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3689999999999999999 99999999999999 9999999995

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.1e-10  Score=77.36  Aligned_cols=37  Identities=24%  Similarity=0.618  Sum_probs=24.4

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |++ |++++||.|. |+++|.++..|..|+++|++++|+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            556 6666677776 777777777777776666664443

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.2e-10  Score=79.12  Aligned_cols=33  Identities=24%  Similarity=0.530  Sum_probs=17.7

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++ |++++||.|. |++.|.++..|..|+++|++
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG   37 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC
Confidence            444 5555555555 55555555555555555555

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=6.1e-10  Score=77.79  Aligned_cols=33  Identities=27%  Similarity=0.639  Sum_probs=16.6

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++ |++++||.|. |++.|.+++.|..|+++|++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG   36 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCC
Confidence            344 4555555555 55555555555555555544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7.1e-10  Score=79.24  Aligned_cols=43  Identities=26%  Similarity=0.302  Sum_probs=39.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc--ccCCCceecc-C
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK--HCGKDKWLCS-C  390 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htgekpy~C~-C  390 (524)
                      .|+++|.++++|.|.+|+ +.|.....|++|++  |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECG-KAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSC-CCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccC-chhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            578889999999999999 99999999999987  9999999998 7

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.9e-10  Score=78.15  Aligned_cols=39  Identities=23%  Similarity=0.500  Sum_probs=35.5

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPS   42 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCC
Confidence            5899 9999999999 9999999999999999999965543

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.9e-10  Score=80.50  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCG-KAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTT-EEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.3e-10  Score=79.52  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=39.4

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ |.|.....|++|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCG-KAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSC-CBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCC-cccCcHHHHHHHHHhcCCCCCCCCC
Confidence            378889999999999999 99999999999999 9999999996

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=3e-10  Score=90.93  Aligned_cols=64  Identities=27%  Similarity=0.453  Sum_probs=51.8

Q ss_pred             ccccceeeecCCCccccCCCCCccccChhhhhhhhcccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          344 CVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      .|..|++.|...++|.|..|+ +.| ....|..|+.|++++||.|. |++.|. ...|..|+++|.++
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~-~~~-~~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCD-LEL-SILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSC-CEE-CHHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHHhhCcccCCCcccCCcccC-hHh-hHHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            467787778888888888888 888 48888888778888888888 888877 48888888888764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.8e-10  Score=79.60  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=39.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECK-KTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTC-CBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccC-cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999996

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=1e-09  Score=77.95  Aligned_cols=40  Identities=28%  Similarity=0.630  Sum_probs=28.1

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKG  422 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~  422 (524)
                      |++++||.|. |++.|.++..|..|+++|++   .++|.|++||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~---~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG---SVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSC---CCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccC---CCCCCCcCCC
Confidence            6777777777 77777777777777777776   4455666664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.6e-10  Score=79.51  Aligned_cols=35  Identities=29%  Similarity=0.634  Sum_probs=21.1

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |++++||.|. |++.|.+++.|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK   38 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCC
Confidence            3555 6666666666 666666666666666666553

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.89  E-value=1.1e-09  Score=76.29  Aligned_cols=37  Identities=24%  Similarity=0.560  Sum_probs=25.2

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |++ |++++||.|. |++.|.+++.|..|+++|++++|+
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            556 7777777777 777777777777777777764443

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=77.62  Aligned_cols=38  Identities=24%  Similarity=0.460  Sum_probs=25.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      .|++ |++++||.|. |++.|.+++.|..|+++|++++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            4666 7777777777 777777777777777777765444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5e-10  Score=78.16  Aligned_cols=41  Identities=24%  Similarity=0.466  Sum_probs=38.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      .|+++|.+++||.|.+|+ +.|.....|.+|++ |++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCG-ARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSSCSEECTTTC-CEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcccCCCCCEeCCCcC-hhhCCHHHHHHHHHHcCCCCCCCC
Confidence            378899999999999999 99999999999999 999999998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.7e-10  Score=79.18  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +.++|+++++|.|++|+ +.|.....|++|++ |++++||.|. |
T Consensus         3 ~~~~h~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCH-KSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSC-CEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccC-cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45778899999999999 99999999999999 9999999998 7

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.7e-10  Score=79.22  Aligned_cols=35  Identities=20%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      .|++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK   38 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCC
Confidence            3555 5555555555 555555555555555555553

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.88  E-value=1e-09  Score=77.86  Aligned_cols=42  Identities=29%  Similarity=0.528  Sum_probs=39.3

Q ss_pred             hccCCcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCC
Q 009831          264 EILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAG  326 (524)
Q Consensus       264 ~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cg  326 (524)
                      .|.++++|.|.+|++.|.....|..|+++|+++                     ++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~---------------------~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS---------------------VGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCC---------------------CCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCC---------------------CCCCCcCCC
Confidence            356889999999999999999999999999998                     999999997

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8e-10  Score=77.92  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=40.2

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|++|+ +.|.....|.+|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECG-KVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTT-EECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCC-CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            589999999999999999 99999999999999 9999999995

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5e-10  Score=79.76  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=39.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ +.|.....|++|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECG-KAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTC-CEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCC-CCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999996

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.87  E-value=7.1e-10  Score=77.26  Aligned_cols=40  Identities=18%  Similarity=0.382  Sum_probs=38.2

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      |+++|.++++|.|.+|+ +.|.....|+.|++ |++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~-k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCG-KSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSC-CEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCC-cccCCHHHHHHHhhhcCCCCCCCC
Confidence            67889999999999999 99999999999999 999999998

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=9e-10  Score=76.92  Aligned_cols=40  Identities=25%  Similarity=0.478  Sum_probs=38.7

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      |+++|.++++|.|++|+ +.|.....|++|++ |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICG-TRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSC-CCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCC-CccCCHHHHHHHHHhcCCCCCCCC
Confidence            78899999999999999 99999999999999 999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.8e-10  Score=78.56  Aligned_cols=37  Identities=27%  Similarity=0.600  Sum_probs=28.5

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP   40 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC
Confidence            4777 8888888888 88888888888888888877443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.1e-10  Score=78.39  Aligned_cols=42  Identities=36%  Similarity=0.527  Sum_probs=40.4

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|++|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCG-KAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTT-EECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            689999999999999999 99999999999999 9999999996

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=8.4e-10  Score=79.66  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKG  422 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~  422 (524)
                      |.++++|.|. |++.|.+...|..|+++|++   .++|.|++|+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~---~k~~~C~~C~   47 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSG---EKPYSSGPSS   47 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCS---CCCCCSCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCC---CCCccCCCCC
Confidence            4455555555 55555555555555555554   2334455554

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1e-09  Score=78.33  Aligned_cols=41  Identities=24%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             hc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          378 EK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       378 ~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      ++ |+++++|.|. |++.|.++..|..|+++|+++   ++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE---KPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHC---CCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC---CCCCCCCC
Confidence            44 6677777777 777777777777777777663   34455554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.3e-09  Score=77.67  Aligned_cols=42  Identities=31%  Similarity=0.458  Sum_probs=40.1

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ |.|.....|++|++ |++++||.|.
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCR-KAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTC-CBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcC-chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.7e-10  Score=79.64  Aligned_cols=42  Identities=19%  Similarity=0.323  Sum_probs=39.9

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|.++++|.|.+|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECG-KGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSC-CCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.9e-10  Score=79.91  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=40.1

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECG-MNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSC-CEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999996

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=1.6e-09  Score=78.17  Aligned_cols=41  Identities=22%  Similarity=0.438  Sum_probs=38.6

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCC
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGT  392 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk  392 (524)
                      .|..+++|.|.+|+ +.|.....|.+|++ |++++||.|. |+|
T Consensus         6 ~~~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICG-KIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTT-EEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCC-cccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            46678999999999 99999999999999 9999999999 997

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.3e-10  Score=77.90  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=40.6

Q ss_pred             ccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          346 KNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +.|+++|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         1 ~~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            1 GSSGSSGTDSKSYNCNECG-KAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCCEEETTTT-EEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCcCCCCCCCeECcccC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3689999999999999999 99999999999999 9999999984

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=77.40  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |++ |+++++|.|. |++.|.++..|..|+++|++++
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGES   39 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCC
Confidence            455 6666666666 6666666666666666666643

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=78.09  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++ |++++||.|. |++.|.++..|..|+++|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR   37 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCS
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCC
Confidence            555 6666666666 66666666666666666655

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.1e-10  Score=78.83  Aligned_cols=41  Identities=29%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             eeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-C
Q 009831          349 YKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-C  390 (524)
Q Consensus       349 ~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-C  390 (524)
                      +++|.++++|.|.+|+ +.|.....|++|++ |++++||.|. |
T Consensus         4 ~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECG-KSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSC-CCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5678889999999999 99999999999999 9999999998 7

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.4e-09  Score=76.39  Aligned_cols=39  Identities=23%  Similarity=0.481  Sum_probs=27.8

Q ss_pred             hc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          378 EK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       378 ~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      ++ |++++||.|. |++.|.++..|..|+++|+++   +||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~---k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE---KPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSC---CCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCC---CCCCCC
Confidence            45 7777777777 777777777777777777774   445554

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.2e-09  Score=75.73  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|++.|.++++|.|.+|+ +.|.....|..|++ |++++||.|.
T Consensus         2 ~h~~~h~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECG-KIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTC-CCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCC-cccCCHHHHHHHHHHHCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999995

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.4e-09  Score=76.84  Aligned_cols=42  Identities=26%  Similarity=0.390  Sum_probs=39.6

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      .|+++|+++++|.|.+|+ +.|.....|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECG-KAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSC-CEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCC-cccCchHHHHHHHhHhcCCCCCCCC
Confidence            588999999999999999 99999999999999 9999999883

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=76.76  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=40.1

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccC-CCceecc
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCG-KDKWLCS  389 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htg-ekpy~C~  389 (524)
                      .|+++|.+++||.|.+|+ +.|.....|+.|++ |++ ++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCE-KTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSC-CEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCC-CcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999 99999999999999 999 9999995

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.80  E-value=1e-09  Score=81.37  Aligned_cols=50  Identities=12%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             cccchhhccccceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCcee
Q 009831          337 QPLKTILCVKNHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWL  387 (524)
Q Consensus       337 k~f~~~~~L~~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~  387 (524)
                      +.|.....|..|+++|+++++|.|.+|+ +.|.....|..|++ |+|++||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICY-AVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTC-CEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCC-cccCCHHHHHHHHHHhccCCCCC
Confidence            6677888899999999999999999999 99999999999999 99999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.3e-09  Score=76.55  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=38.0

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +++.|+++++|.|.+|+ +.|.....|+.|++ |++++||.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCG-KFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSC-CCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCC-CeeCChHHHHHHHHHhCCCCCCCCC
Confidence            45778899999999999 99999999999999 9999999996

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.77  E-value=2.7e-09  Score=83.49  Aligned_cols=55  Identities=25%  Similarity=0.576  Sum_probs=45.3

Q ss_pred             CCcceecCC--CCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCC--CCcccCcCcCCccccchh
Q 009831          267 APHTHFCTI--CGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPY--AGCKRNKDHKKFQPLKTI  342 (524)
Q Consensus       267 ~~k~~~C~~--CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~--Cgc~~~~~~~~~k~f~~~  342 (524)
                      ..++|.|.+  |++.|.....|+.|+++|.++                     ++|.|++  |+          +.|...
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~---------------------~~~~C~~~~C~----------k~f~~~   62 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE---------------------KPFSCSWKGCE----------RRFARS   62 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHSSS---------------------CSEECCCTTCC----------CEESSH
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcCCC---------------------CCccCCCCCCC----------cccCCH
Confidence            567899998  999999999999999999988                     8899965  87          666666


Q ss_pred             hccccceeee
Q 009831          343 LCVKNHYKRT  352 (524)
Q Consensus       343 ~~L~~H~~~h  352 (524)
                      ..|.+|+++|
T Consensus        63 ~~l~~H~~~H   72 (72)
T 2epa_A           63 DELSRHRRTH   72 (72)
T ss_dssp             HHHHHHTTTC
T ss_pred             HHHHhHhhcC
Confidence            6666666543

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=3.3e-09  Score=75.19  Aligned_cols=35  Identities=26%  Similarity=0.622  Sum_probs=23.1

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |.+ |++++||.|. |++.|.++..|..|+++|++++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK   39 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCC
Confidence            344 6666777776 7777777777777777666643

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=5.3e-09  Score=73.53  Aligned_cols=37  Identities=19%  Similarity=0.413  Sum_probs=26.6

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDET  419 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~  419 (524)
                      |++++||.|. |++.|.++..|..|+++|++++   +|.|+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k---~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDK---SGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTT---CSSSC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCC---CccCC
Confidence            7777777777 7777777777777777777743   44554

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.3e-09  Score=76.06  Aligned_cols=39  Identities=26%  Similarity=0.464  Sum_probs=19.2

Q ss_pred             eeecCCCccccC--CCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          350 KRTHCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       350 ~~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      ++|+++++|.|.  .|+ +.|.....|.+|++ |++++||.|.
T Consensus         5 ~~H~~~k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   46 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCG-WRFSRSDELSRHRRSHSGVKPSGPS   46 (48)
T ss_dssp             CSSCCCCCEECCSSSCC-CEESSHHHHHHHHTTSCCCCSCSSC
T ss_pred             CCcCCCCCeECCCCCCC-CccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344444455554  454 55555555555554 5555555544

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.6e-09  Score=75.79  Aligned_cols=41  Identities=27%  Similarity=0.500  Sum_probs=37.6

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +.++|.++++|.|.+|+ |.|.....|.+|++ |++++||.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCG-KSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTT-EEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCC-CccCChHHHHHHHHHhCCCCCCCCC
Confidence            45678899999999999 99999999999999 9999999995

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=3.9e-09  Score=73.22  Aligned_cols=33  Identities=30%  Similarity=0.668  Sum_probs=19.4

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      |++++||.|. |++.|.++..|..|+++|++++|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            5556666666 66666666666666666655433

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=5.8e-10  Score=92.17  Aligned_cols=30  Identities=13%  Similarity=0.480  Sum_probs=16.0

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++++||.|. |++.|.++..|..|+++|++
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~   50 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNE   50 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCC
Confidence            4555555555 55555555555555555555

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=4.6e-09  Score=73.84  Aligned_cols=39  Identities=23%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS  389 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~  389 (524)
                      +.|+++++|.|.+|+ +.|.....|.+|++ |++++||.|.
T Consensus         3 ~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECD-CRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSC-CCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCC-CeeCChHHHHHHHHhhCCCCCccCC
Confidence            467889999999999 99999999999999 9999999985

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=8.5e-09  Score=71.43  Aligned_cols=38  Identities=26%  Similarity=0.508  Sum_probs=36.2

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      ++|+++++|.|++|+ +.|.....|+.|++ |++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECG-KSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSC-CEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCC-CCcCCHHHHHHHHHHhCCCCCcCC
Confidence            567899999999999 99999999999999 999999998

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=8.4e-09  Score=69.61  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=29.5

Q ss_pred             hc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          378 EK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       378 ~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      ++ |++++||.|. |++.|.+++.|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            35 8888899998 99999999999999999888654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=73.33  Aligned_cols=43  Identities=28%  Similarity=0.493  Sum_probs=37.3

Q ss_pred             hhhc-ccCCCceecc---CCCccCChhHHHHHHHhhcCCCCCCCCCCCCC
Q 009831          376 THEK-HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHTPAIPLDETIK  421 (524)
Q Consensus       376 ~H~r-Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C  421 (524)
                      .|.+ |++++||.|.   |++.|.++..|..|+++|+++   ++|.|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~---k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV---KPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCC---CSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCC---CCCCCCCC
Confidence            3667 9999999994   999999999999999999985   55677766

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.68  E-value=9.6e-09  Score=69.32  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=28.7

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |++ |++++||.|. |++.|.++..|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            777 8888888888 888888888888888888763

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.64  E-value=1.9e-08  Score=68.91  Aligned_cols=35  Identities=20%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAI  414 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k  414 (524)
                      |++++||.|. ||+.|.+.+.|..|+++|++++|+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            6788888888 8888888888888888888866553

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=5.6e-09  Score=83.43  Aligned_cols=65  Identities=18%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             hhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccccccCCC
Q 009831          371 IADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGS  441 (524)
Q Consensus       371 ~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~~H~~~~~gs  441 (524)
                      +..|..|++ |++++||.|. |++.|. ...|..|+ .|.+   .+++.|+.|++.|. ...|..|+..+.+.
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~---~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCG---ARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHH---HCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcC---CCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            457899999 9999999999 999994 99999999 8888   66778999999887 48999999998876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=8.8e-09  Score=85.01  Aligned_cols=58  Identities=17%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      .|.++|+++++|.|.+|+ +.|.....|+.|++ |++++||.|. |.+    ...|..|+++|.|
T Consensus        15 ~~~~~H~~~kpy~C~~C~-k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCD-SKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCCCCSCEECSSSC-CEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCC-CEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            345678999999999999 99999999999999 9999999998 764    5567778888876

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.61  E-value=2.4e-08  Score=66.20  Aligned_cols=33  Identities=24%  Similarity=0.525  Sum_probs=27.2

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      |++++||.|. |++.|.+++.|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788888888 88888888888888888887654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.60  E-value=2.8e-08  Score=66.07  Aligned_cols=33  Identities=21%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      |++++||.|. |++.|.+++.|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            6788888888 88888888888888888887654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.54  E-value=5.3e-08  Score=76.20  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             ccCCCceecc---CCCccCChhHHHHHH-HhhcCCCCCCC
Q 009831          380 HCGKDKWLCS---CGTTFSRKDKLFGHI-ALFQGHTPAIP  415 (524)
Q Consensus       380 Htgekpy~C~---Cgk~F~~ks~L~~H~-r~Htg~kp~k~  415 (524)
                      ++|+|||+|.   |+|+|.++++|.+|+ ++|++++|+.+
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            5566666663   666666666666665 46666555544

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.51  E-value=3.2e-08  Score=67.74  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             ecCCCccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          352 THCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       352 h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      |.++++|.|.+|+ +.|.....|..|++ |++++||.|
T Consensus         1 h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCK-REFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTC-CEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCC-cccCCHHHHHHHHHHcCCCcccee
Confidence            4678999999999 99999999999999 999999976

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=9.2e-08  Score=64.01  Aligned_cols=31  Identities=13%  Similarity=0.217  Sum_probs=25.7

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |++++||.|. |++.|.+++.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            7788888888 888888888888888888764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=7.1e-08  Score=75.51  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=35.2

Q ss_pred             eeecCCCccccCC--CCCccccChhhhhhhh-c-ccCCCceecc
Q 009831          350 KRTHCDKSYVCSR--CNTKKFSVIADLKTHE-K-HCGKDKWLCS  389 (524)
Q Consensus       350 ~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~-r-Htgekpy~C~  389 (524)
                      ....++|||+|.+  |+ |.|.+.++|++|+ + |+++|||.|.
T Consensus        20 ~~~sGEKPYkC~~~~Cg-KaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           20 TRYSPYRPYRCVHQGCF-AAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSSCSSCSCBCCSTTCC-CBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             ccccCCCCeECCCCCcC-hhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            4567899999976  99 9999999999997 6 9999999995

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=63.38  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |++++||.|. |++.|..+..|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            7788888888 999998888899998888875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=9.6e-08  Score=64.34  Aligned_cols=31  Identities=23%  Similarity=0.383  Sum_probs=27.1

Q ss_pred             ccCCCceecc-CCCccCCh-hHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRK-DKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~k-s~L~~H~r~Htg~  410 (524)
                      |++++||.|. |++.|.++ +.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            7888899998 99999988 8999999888875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=8.4e-08  Score=64.94  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             hc-ccCCCceecc-CCCccCChhHHHHH-HHhhcCC
Q 009831          378 EK-HCGKDKWLCS-CGTTFSRKDKLFGH-IALFQGH  410 (524)
Q Consensus       378 ~r-Htgekpy~C~-Cgk~F~~ks~L~~H-~r~Htg~  410 (524)
                      ++ |++++||.|. |++.|.+++.|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            35 8888899998 99999999999999 8888763

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=8.1e-08  Score=68.91  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             hhhhhc-ccCCCceec--c-CCCccCChhHHHHHHHhhcCCC
Q 009831          374 LKTHEK-HCGKDKWLC--S-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       374 L~~H~r-Htgekpy~C--~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      +..|.. |++++||.|  . ||+.|.+++.|..|+++|+|++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            444555 888888888  4 8888888888888888888753

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.3e-07  Score=65.38  Aligned_cols=31  Identities=19%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             ccCCCceecc---CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |+|+|||+|.   |+|+|.+++.|.+|+++|+|+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            6788888885   888888888888888888874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=63.02  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |++++||.|. |++.|.++..|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            7888888888 888888888888888888874

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=1.5e-07  Score=63.76  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=25.3

Q ss_pred             ccCCCceecc---CCCccCChhHHHHHHHhhcCCCCC
Q 009831          380 HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       380 Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |++++||.|.   |++.|.+++.|.+|+++|++++|+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5677777777   777777777777777777776554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.6e-07  Score=62.61  Aligned_cols=31  Identities=29%  Similarity=0.549  Sum_probs=26.0

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |+++++|.|. |++.|.++..|..|+++|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            6788888888 888888888888888888875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=7.4e-08  Score=64.82  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=32.3

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      +.|.++++|.|.+|+ +.|.....|..|++ |++++|
T Consensus         2 ~~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCE-KSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTT-EECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCC-CccCCHHHHHHHHHHHcCCCC
Confidence            568889999999999 99999999999999 999886

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.40  E-value=1.7e-07  Score=61.83  Aligned_cols=30  Identities=33%  Similarity=0.541  Sum_probs=19.9

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      +||.|. ||+.|.+.+.|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            466666 777777777777777776665554

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.40  E-value=1.2e-07  Score=63.72  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccCC
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGK  383 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htge  383 (524)
                      |++.|.+++||.|++|+ +.|.....|.+|++ |+|+
T Consensus         2 H~~~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCD-RSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTC-CCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCC-cccCcHHHHHHHHHHhccC
Confidence            77889999999999999 99999999999999 9875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2.3e-07  Score=62.01  Aligned_cols=31  Identities=19%  Similarity=0.470  Sum_probs=26.8

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |.+++||.|. |++.|.+...|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            6788889998 999999999999999888875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.35  E-value=1.5e-07  Score=62.10  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=29.8

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCCceec
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLC  388 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C  388 (524)
                      |||.|.+|+ +.|.....|..|++ |+|++||.+
T Consensus         1 kp~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECP-KRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSC-CCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCC-chhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999 99999999999999 999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.34  E-value=2e-07  Score=67.22  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHH-hhcCCCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIA-LFQGHTPA  413 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r-~Htg~kp~  413 (524)
                      |+|+|||.|. |||.|.++..|..|++ +|+++.+.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            7899999999 9999999999999999 99986544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.34  E-value=1.8e-07  Score=61.85  Aligned_cols=34  Identities=29%  Similarity=0.552  Sum_probs=30.8

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      +|.++++|.|.+|+ +.|.....|+.|++ |++++|
T Consensus         1 ~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCL-KKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSC-CEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCc-chhCCHHHHHHHHHHHcCCCC
Confidence            36788999999999 99999999999999 999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.32  E-value=2.4e-07  Score=61.42  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      +|.++++|.|.+|+ +.|.....|.+|++ |++++|
T Consensus         1 ~H~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICL-SAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSC-CEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCC-cccCCHHHHHHHHHHcCCCCC
Confidence            36788999999999 99999999999999 999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=5.1e-07  Score=62.37  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             ccCCcceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +.+++||+|++  |+|.|.+...|++||++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45789999986  999999999999999999885

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=1.2e-06  Score=68.11  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |.++|||.|. |+|+|.+++.|.+|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            7889999999 9999999999999999999853

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.24  E-value=1.9e-07  Score=61.08  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCCce
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKDKW  386 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy  386 (524)
                      |||.|.+|+ |.|.....|.+|++ |++++||
T Consensus         1 kp~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACP-KRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSC-TTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCC-cccCCHHHHHHHHHHHccCCCC
Confidence            467777777 77777777777777 7777776

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.24  E-value=3e-07  Score=62.77  Aligned_cols=25  Identities=28%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHH
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHI  404 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~  404 (524)
                      +.|||||.|. |||+|.++++|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            4678888888 888888888888887

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.23  E-value=6.4e-07  Score=60.45  Aligned_cols=31  Identities=23%  Similarity=0.620  Sum_probs=25.6

Q ss_pred             ccCCCceecc---CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS---CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |++++||.|.   ||+.|.+++.|..|+++|+|+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            7788888885   888888888888888888875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=1.1e-06  Score=58.33  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             hccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          264 EILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       264 ~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      .|.++++|.|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            356789999999999999999999999999876

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.16  E-value=1.1e-06  Score=55.44  Aligned_cols=28  Identities=21%  Similarity=0.559  Sum_probs=21.6

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      ++||.|. ||+.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4678888 888888888888888887764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=5.1e-07  Score=61.03  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=31.4

Q ss_pred             ecCCCccccC--CCCCccccChhhhhhhhc-ccCCCcee
Q 009831          352 THCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKDKWL  387 (524)
Q Consensus       352 h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgekpy~  387 (524)
                      |+++++|.|.  .|+ +.|.....|++|++ |++++||.
T Consensus         1 H~~~k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCG-QRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTC-CEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCC-cccCCHHHHHHHHHHhCCCCCCC
Confidence            4678999999  599 99999999999999 99999873

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=7.5e-07  Score=59.42  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      .|.+++||.|.+|+ +.|.....|.+|++ |++++
T Consensus         3 ~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICE-RKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSC-CEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCC-CccCCHHHHHHHHHHhcCCC
Confidence            46778999999999 99999999999999 99875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1.4e-06  Score=57.89  Aligned_cols=32  Identities=34%  Similarity=0.628  Sum_probs=29.7

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +.++++|.|.+|++.|.....|..|+++|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            45789999999999999999999999999876

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.14  E-value=1.3e-07  Score=61.85  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=27.1

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      +||.|. ||+.|.+++.|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            589999 999999999999999999997765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=6.1e-07  Score=60.24  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             eeecCCCccccCCCCCccccCh-hhhhhhhc-ccCCC
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVI-ADLKTHEK-HCGKD  384 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~-s~L~~H~r-Htgek  384 (524)
                      ++|.++++|.|.+|+ +.|... ..|.+|++ |++++
T Consensus         2 ~~h~~~k~~~C~~C~-k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCD-FYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSS-CEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCC-hhhccCHHHHHHHHHhcCCCC
Confidence            457788999999999 999999 99999999 99875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1.7e-06  Score=57.64  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=29.5

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +.++++|.|.+|++.|.....|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            45789999999999999999999999999876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.12  E-value=9.3e-07  Score=58.94  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             eecCCCccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          351 RTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       351 ~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      .|.+++||+|.+|+ +.|.....|..|++ |++++
T Consensus         3 ~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCE-YATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSS-CEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCC-chhCCHHHHHHHHHHhccCC
Confidence            46788999999999 99999999999999 99875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=8.1e-07  Score=59.93  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhh-hc-ccCC
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTH-EK-HCGK  383 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H-~r-Htge  383 (524)
                      ++|.++|||+|..|+ +.|.....|+.| ++ |+++
T Consensus         2 ~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCH-YSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSS-CEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCC-cccCCHHHHHHHHHHHccCc
Confidence            568889999999999 999999999999 88 9875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.09  E-value=1.5e-06  Score=54.56  Aligned_cols=27  Identities=37%  Similarity=0.655  Sum_probs=19.3

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +||.|. ||+.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            467777 777777777777777777664

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.08  E-value=2.1e-06  Score=53.78  Aligned_cols=27  Identities=22%  Similarity=0.597  Sum_probs=19.8

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +||.|. |++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            467777 777777777777777777664

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.08  E-value=1.1e-06  Score=62.89  Aligned_cols=38  Identities=24%  Similarity=0.524  Sum_probs=33.7

Q ss_pred             ccceeeecCCCccccC--CCCCccccChhhhhhhhc-ccCCC
Q 009831          346 KNHYKRTHCDKSYVCS--RCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       346 ~~H~~~h~~~Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      ..|+..|.+++||.|.  .|+ |.|.....|++|++ |+|+|
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~-k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCT-KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCC-CEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCC-CccCCHHHHHHHHHHccCCC
Confidence            3456779999999996  799 99999999999999 99985

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.08  E-value=1.8e-06  Score=62.10  Aligned_cols=32  Identities=31%  Similarity=0.491  Sum_probs=29.3

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHh-hhCCC
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMR-GHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r-~H~~e  296 (524)
                      |.++++|.|.+|+|.|.....|..|++ +|+++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            568899999999999999999999999 99887

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.07  E-value=1.6e-06  Score=54.10  Aligned_cols=27  Identities=33%  Similarity=0.670  Sum_probs=19.7

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ++||.|. |++.|.+.+.|..|+++|+|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4677777 77777777777777777653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=2.1e-06  Score=53.30  Aligned_cols=26  Identities=15%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhc
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      ++||.|. ||+.|.+++.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            4678888 8888888888888888774

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.05  E-value=2.5e-06  Score=53.75  Aligned_cols=28  Identities=18%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      +||.|. ||+.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            467777 7777777777777777777654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.04  E-value=2.3e-06  Score=53.51  Aligned_cols=27  Identities=26%  Similarity=0.658  Sum_probs=21.3

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +||.|. |++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            477888 888888888888888888764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.04  E-value=2.3e-06  Score=53.46  Aligned_cols=27  Identities=19%  Similarity=0.524  Sum_probs=19.9

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +||.|. |++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            467777 777777777777777777764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.02  E-value=2.7e-06  Score=53.09  Aligned_cols=28  Identities=29%  Similarity=0.593  Sum_probs=25.8

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      +++|.|.+|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999999864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=3.2e-06  Score=53.18  Aligned_cols=29  Identities=21%  Similarity=0.512  Sum_probs=26.9

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +++|.|.+||+.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47899999999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.02  E-value=2.7e-06  Score=52.71  Aligned_cols=27  Identities=22%  Similarity=0.563  Sum_probs=25.1

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      +++|.|.+||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999984

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.02  E-value=1.7e-06  Score=53.86  Aligned_cols=26  Identities=12%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhc
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      ++||.|. ||+.|.+++.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            4677777 7777777777777777763

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.00  E-value=3.1e-06  Score=53.07  Aligned_cols=28  Identities=29%  Similarity=0.540  Sum_probs=26.2

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++|.|.+||+.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5799999999999999999999999875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.99  E-value=2.3e-06  Score=53.27  Aligned_cols=27  Identities=33%  Similarity=0.674  Sum_probs=25.0

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      +++|+|.+||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999884

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.25  E-value=8.3e-07  Score=56.20  Aligned_cols=28  Identities=21%  Similarity=0.594  Sum_probs=17.9

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      ++||.|. ||+.|.+...|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            3566666 666666666666666666653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.99  E-value=4.3e-06  Score=52.32  Aligned_cols=28  Identities=32%  Similarity=0.835  Sum_probs=26.2

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++|.|.+|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999999875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.21  E-value=1e-06  Score=55.60  Aligned_cols=27  Identities=26%  Similarity=0.693  Sum_probs=16.3

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +||.|. ||+.|.+.+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            356666 666666666666666666553

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.96  E-value=4.4e-06  Score=64.99  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=29.7

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +.++|+|+|.+|+|.|.+...|++|+++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            45789999999999999999999999999986

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.95  E-value=4.2e-06  Score=56.28  Aligned_cols=32  Identities=38%  Similarity=0.707  Sum_probs=29.1

Q ss_pred             ccCCcceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +.++++|.|.+  ||+.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46789999995  999999999999999999876

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.93  E-value=4.4e-06  Score=51.48  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=24.1

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +|+|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            589999999999999999999999864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.91  E-value=7.7e-06  Score=52.71  Aligned_cols=29  Identities=28%  Similarity=0.545  Sum_probs=26.9

Q ss_pred             CcceecC--CCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCT--ICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~--~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +++|.|.  .||+.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4789999  8999999999999999999876

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=4.9e-06  Score=51.94  Aligned_cols=28  Identities=39%  Similarity=0.693  Sum_probs=26.1

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++|.|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            5799999999999999999999999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.90  E-value=4.9e-06  Score=51.30  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=16.0

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhcC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ||.|. |++.|.++..|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46666 66666666666666666654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.90  E-value=4.8e-06  Score=51.90  Aligned_cols=28  Identities=32%  Similarity=0.642  Sum_probs=26.1

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++|.|.+|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5799999999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.88  E-value=8.3e-06  Score=52.22  Aligned_cols=28  Identities=43%  Similarity=0.825  Sum_probs=26.1

Q ss_pred             cceecC--CCCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCT--ICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~--~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++|.|.  .||+.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            579998  9999999999999999999876

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.85  E-value=5.7e-06  Score=52.25  Aligned_cols=25  Identities=32%  Similarity=0.832  Sum_probs=13.6

Q ss_pred             ceecc-CCCccCChhHHHHH-HHhhcC
Q 009831          385 KWLCS-CGTTFSRKDKLFGH-IALFQG  409 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H-~r~Htg  409 (524)
                      ||.|. ||+.|.+.+.|..| +++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            45555 55555555555555 455554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=9e-06  Score=52.36  Aligned_cols=27  Identities=41%  Similarity=0.748  Sum_probs=13.3

Q ss_pred             CccccC--CCCCccccChhhhhhhhc-ccCC
Q 009831          356 KSYVCS--RCNTKKFSVIADLKTHEK-HCGK  383 (524)
Q Consensus       356 Kpy~C~--~C~~K~F~~~s~L~~H~r-Htge  383 (524)
                      |||.|.  .|+ +.|.....|..|++ |+++
T Consensus         2 k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCD-KAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCC-CCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCC-CccCCHHHHHHHHHHccCC
Confidence            345554  455 55555555555554 5444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.82  E-value=6.7e-06  Score=51.64  Aligned_cols=29  Identities=38%  Similarity=0.628  Sum_probs=26.3

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCCc
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKDK  385 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekp  385 (524)
                      ++|.|.+|+ +.|.....|..|++ |+++++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCE-FRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSS-CCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCC-CccCCHHHHHHHHHHHccCCC
Confidence            579999999 99999999999999 988764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.81  E-value=9.4e-06  Score=51.94  Aligned_cols=26  Identities=31%  Similarity=0.919  Sum_probs=12.6

Q ss_pred             ccccC--CCCCccccChhhhhhhhc-ccCC
Q 009831          357 SYVCS--RCNTKKFSVIADLKTHEK-HCGK  383 (524)
Q Consensus       357 py~C~--~C~~K~F~~~s~L~~H~r-Htge  383 (524)
                      ||.|.  .|+ +.|.....|..|++ |+|+
T Consensus         2 p~~C~~~~C~-k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCG-KRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCC-CBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCC-cccCCHhHHHHHHHHhcCC
Confidence            44444  454 45554445555544 4444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.01  E-value=2.7e-06  Score=53.51  Aligned_cols=28  Identities=32%  Similarity=0.667  Sum_probs=24.7

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      |||.|.+|+ +.|.....|..|++ |++++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCG-KAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            578999999 99999999999999 98874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.01  E-value=2.8e-06  Score=52.16  Aligned_cols=26  Identities=35%  Similarity=0.719  Sum_probs=24.2

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      ++|.|.+||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999884

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=51.94  Aligned_cols=24  Identities=29%  Similarity=0.758  Sum_probs=15.7

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhh
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      |||.|. ||+.|.+.+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            456666 666666666666666665

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=53.41  Aligned_cols=29  Identities=34%  Similarity=0.772  Sum_probs=25.1

Q ss_pred             CCccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          355 DKSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       355 ~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      ++||.|..|+ +.|.....|..|++ |++++
T Consensus         1 ~k~~~C~~C~-k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQ-RQFADPGALQRHVRIHTGEK   30 (30)
Confidence            3689999999 99999999999998 88764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.78  E-value=7.8e-06  Score=55.65  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=21.9

Q ss_pred             ecCCCccccCCCCCccccChhhhhhhh
Q 009831          352 THCDKSYVCSRCNTKKFSVIADLKTHE  378 (524)
Q Consensus       352 h~~~Kpy~C~~C~~K~F~~~s~L~~H~  378 (524)
                      +.++|||+|++|+ |.|.+.++|++|+
T Consensus         3 ~~gekp~~C~~Cg-K~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCG-IAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTT-EECSCHHHHHHHH
T ss_pred             CCCccCeECCCCC-CccCCHhHccCcC
Confidence            3567888888888 8999999998887

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.72  E-value=1.6e-05  Score=50.14  Aligned_cols=28  Identities=39%  Similarity=0.731  Sum_probs=25.4

Q ss_pred             CccccCCCCCccccChhhhhhh-hc-ccCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTH-EK-HCGKD  384 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H-~r-Htgek  384 (524)
                      |||.|..|+ +.|.....|..| ++ |++++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCN-RAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTC-CBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccC-cccCChHHHHHHHHHHccCCC
Confidence            589999999 999999999999 67 99875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.64  E-value=2.5e-05  Score=48.63  Aligned_cols=27  Identities=26%  Similarity=0.544  Sum_probs=25.0

Q ss_pred             cceecC--CCCCccCChHHHHHHHhhhCC
Q 009831          269 HTHFCT--ICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       269 k~~~C~--~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.23  E-value=0.0001  Score=45.75  Aligned_cols=24  Identities=38%  Similarity=0.826  Sum_probs=14.3

Q ss_pred             ccccC--CCCCccccChhhhhhhhc-cc
Q 009831          357 SYVCS--RCNTKKFSVIADLKTHEK-HC  381 (524)
Q Consensus       357 py~C~--~C~~K~F~~~s~L~~H~r-Ht  381 (524)
                      +|.|.  .|+ +.|...+.|..|++ |+
T Consensus         2 ~~~C~~~~C~-k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCG-RSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTC-EEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCc-CccCCHHHHHHHHHHhC
Confidence            45566  666 66666666666655 54

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00069  Score=52.01  Aligned_cols=49  Identities=27%  Similarity=0.495  Sum_probs=42.3

Q ss_pred             cccC--CCCCccccChhhhhhhh-c-ccCCC------ceecc---CCCccCChhHHHHHHHhh
Q 009831          358 YVCS--RCNTKKFSVIADLKTHE-K-HCGKD------KWLCS---CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       358 y~C~--~C~~K~F~~~s~L~~H~-r-Htgek------py~C~---Cgk~F~~ks~L~~H~r~H  407 (524)
                      |.|.  .|+ +.|.+...|..|+ + |.+.+      +|.|.   |++.+.....|..|+++.
T Consensus         2 l~C~W~~C~-~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            2 LKCKWKECP-ESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCTTCC-CCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CeEeeCCCC-CcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3454  499 9999999999998 5 98766      89997   999999999999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.97  E-value=0.0015  Score=56.75  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhh
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      +-. |+|++||.|. |+|.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            345 8999999999 999999999999998753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.0025  Score=48.82  Aligned_cols=53  Identities=19%  Similarity=0.203  Sum_probs=42.5

Q ss_pred             eecc---CCCccCChhHHHHHH-HhhcCCC---CCCCCCCC--CCCCCCCCCcccccccccc
Q 009831          386 WLCS---CGTTFSRKDKLFGHI-ALFQGHT---PAIPLDET--IKGLAGPSDRREGNEATSK  438 (524)
Q Consensus       386 y~C~---Cgk~F~~ks~L~~H~-r~Htg~k---p~k~~~C~--~C~~~f~~~~~l~~H~~~~  438 (524)
                      |.|.   |++.|.+...|..|+ +.|.+.+   ....|.|.  .|+..+.....|..|++..
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            5686   999999999999998 5798776   44578886  7888777767888888754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.74  E-value=0.0061  Score=53.31  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             CCcceecCCCCCccCChHHHHHHH--hhhC
Q 009831          267 APHTHFCTICGKGFKRDANLRMHM--RGHG  294 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~--r~H~  294 (524)
                      ..+++.|.+|...|.....+..|.  +.|.
T Consensus        29 ~~~~~~C~~C~v~~~S~s~~~~H~~gkkH~   58 (127)
T 1zu1_A           29 IFSDTQCKVCSAVLISESQKLAHYQSRKHA   58 (127)
T ss_dssp             TBCSSEETTTTEECCSHHHHHHHHHCHHHH
T ss_pred             cCCCCcCcCCCCEeCCHHHHHHHHCcHHHH
Confidence            346799999999999999999998  5664

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.91  E-value=0.0063  Score=52.86  Aligned_cols=30  Identities=27%  Similarity=0.569  Sum_probs=26.7

Q ss_pred             hccCCcceecCCCCCccCChHHHHHHHhhh
Q 009831          264 EILAPHTHFCTICGKGFKRDANLRMHMRGH  293 (524)
Q Consensus       264 ~~~~~k~~~C~~CgK~F~~~~~L~~H~r~H  293 (524)
                      .++++++|.|..|+|.|.+...|..|+|+.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            456889999999999999999999998753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.73  E-value=0.036  Score=50.43  Aligned_cols=53  Identities=15%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      ++..|+.|+ ..+ .+..|..|+. ....++-.|. |+..|. ...|..|..++.|..
T Consensus       109 ~~v~C~~C~-~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          109 ALMDCPQCQ-RPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             SEEECTTTC-CEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC--
T ss_pred             eeeECCCCC-hHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChh
Confidence            345566665 444 4455666665 5555666666 666553 344566666655543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.07  E-value=0.026  Score=49.21  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccce--eeecCC-CccccCCC------CCccccChhhhhhhhc-ccCCCcee
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHY--KRTHCD-KSYVCSRC------NTKKFSVIADLKTHEK-HCGKDKWL  387 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~--~~h~~~-Kpy~C~~C------~~K~F~~~s~L~~H~r-Htgekpy~  387 (524)
                      +++.|.+|.          ..|.+...+..|+  +.|... +.|.+..+      + +.|...    .+.. +.+.+.|.
T Consensus        31 ~~~~C~~C~----------v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~   95 (127)
T 1zu1_A           31 SDTQCKVCS----------AVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPA-KKFKAA----PAEISDGEDRSKC   95 (127)
T ss_dssp             CSSEETTTT----------EECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSC-CCCSCC----SSCCSSCCCTTTE
T ss_pred             CCCcCcCCC----------CEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCC-CccCCC----ccccccCCCCCeE
Confidence            778888888          6777777777776  444321 33433211      2 333221    2334 66777788


Q ss_pred             cc-CCCccCChhHHHHHHH
Q 009831          388 CS-CGTTFSRKDKLFGHIA  405 (524)
Q Consensus       388 C~-Cgk~F~~ks~L~~H~r  405 (524)
                      |. |.+.|.....|..|..
T Consensus        96 C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           96 CPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             ETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCEeCCHHHHHHHHC
Confidence            88 8888888888888864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.96  E-value=0.059  Score=38.29  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      -+|.|+.|++.|.....|+.||+---+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCc
Confidence            459999999999999999999985433

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.56  E-value=0.056  Score=38.37  Aligned_cols=21  Identities=29%  Similarity=0.794  Sum_probs=11.4

Q ss_pred             ceecc-CCCccCChhHHHHHHH
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIA  405 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r  405 (524)
                      +|.|+ |++.|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            45555 5555555555555555

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=91.44  E-value=0.1  Score=47.34  Aligned_cols=82  Identities=17%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             Ccccc--CCCCCccccChhhhhhhhcccCCCceecc-CCCccCChhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcccc
Q 009831          356 KSYVC--SRCNTKKFSVIADLKTHEKHCGKDKWLCS-CGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREG  432 (524)
Q Consensus       356 Kpy~C--~~C~~K~F~~~s~L~~H~rHtgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~k~~~C~~C~~~f~~~~~l~  432 (524)
                      ....|  .-|+ ..+ ....|..|++...-++..|. |+..+ .+..|..|+...-   +++...|+.|+..+.. ..+.
T Consensus        81 l~v~C~n~GC~-~~~-~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C---~~r~~~C~~C~~~~~~-~~l~  153 (170)
T 3hcs_A           81 LMVKCPNEGCL-HKM-ELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDC---PRRQVSCDNCAASMAF-EDKE  153 (170)
T ss_dssp             SEEECCSTTCC-CEE-EGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTC---TTCEEECTTTCCEEEG-GGHH
T ss_pred             cccCCCCCCCC-cee-cHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhC---CCCCeECCCCCCccCH-HHHH
Confidence            34556  4687 554 46678889776667889999 99999 5777999987533   4677789999887754 5678


Q ss_pred             ccccccCCCCCC
Q 009831          433 NEATSKIGSTNF  444 (524)
Q Consensus       433 ~H~~~~~gs~~~  444 (524)
                      .|...+.|..++
T Consensus       154 ~H~~~~~~~~~~  165 (170)
T 3hcs_A          154 IHDQNCPLALEH  165 (170)
T ss_dssp             HHHTTCCC----
T ss_pred             hHHHhCcChhhh
Confidence            888888776543

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=82.53  E-value=1.7  Score=33.51  Aligned_cols=55  Identities=33%  Similarity=0.648  Sum_probs=38.6

Q ss_pred             cccceeeecC-CCcccc-CCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHH
Q 009831          345 VKNHYKRTHC-DKSYVC-SRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHI  404 (524)
Q Consensus       345 L~~H~~~h~~-~Kpy~C-~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~  404 (524)
                      |..|+  .+| -.+..| ..|+ ..+. +..|..|+. ....++..|. |+..|.+ ..|..|.
T Consensus         5 l~~H~--~~C~~~~v~C~~~C~-~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A            5 SSGHL--NTCSFNVIPCPNRCP-MKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             CSCCC--CCCCCSCCBCTTCCS-CBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             HHHHH--HHCCCcccCCCcccc-HHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHH
Confidence            44554  233 356788 5798 6664 567888888 7788889999 9998874 4466665

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=80.48  E-value=0.59  Score=37.71  Aligned_cols=26  Identities=31%  Similarity=0.690  Sum_probs=15.2

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      -..|- |||.|.   .|++|+++|+|.+|+
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTCSCHH
T ss_pred             ceEecccchhhH---HHHHHHHHccCCCHH
Confidence            34566 666665   356666665565443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	524
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	6e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	9e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.002
d2dmda2	26	g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {H	0.003
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.004
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 269 HT----HFCTICGKGFKRDANLRMHMRGHGDE 296
           HT    + C+ C K F++   L MH + + D 
Sbjct: 3   HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (81), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 269 HT----HFCTICGKGFKRDANLRMHMRGHGDE 296
           H+    + C  CGK F R + L  H R H  E
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.5 bits (80), Expect = 9e-04
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 273 CTICGKGFKRDANLRMHMRGH 293
           C +C + F R  +L+ H R H
Sbjct: 5   CEVCTRAFARQEHLKRHYRSH 25

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 269 HTHFCTICGKGFKRDANLRMHMRGH 293
             + C +CGK FK   +L  HM+ H
Sbjct: 29  RPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 273 CTICGKGFKRDANLRMHMRGH 293
           C IC + F R  +L  H+R H
Sbjct: 6   CRICMRNFSRSDHLTTHIRTH 26

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.003
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 271 HFCTICGKGFKRDANLRMHMRGH 293
           H C +CGK F R   L+ HMR H
Sbjct: 2   HKCEVCGKCFSRKDKLKTHMRCH 24

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 273 CTICGKGFKRDANLRMHMRGH 293
           C  C K F R  +L  H++ H
Sbjct: 5   CPECPKRFMRSDHLSKHIKTH 25

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (76), Expect = 0.004
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 269 HT----HFCTICGKGFKRDANLRMH-MRGHGDE 296
           H+    + C IC   F +   ++MH ++ H + 
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	524
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.55
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.33
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.2
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.11
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.05
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.02
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.99
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.97
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.91
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.89
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.88
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.83
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.81
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.75
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.74
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.74
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.69
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.69
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.68
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.63
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.62
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.6
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.6
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.59
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.58
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.58
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.54
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.51
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.38
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.34
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.29
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.28
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.25
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.23
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.1
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.06
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.61
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.59
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.55
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.53
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.29
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.23
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.21
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.17
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.06
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.06
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.04
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.0
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.99
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.93
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.92
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.89
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.8
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.75
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.71
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.71
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.64
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.59
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.47
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.42
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.3
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.25
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.21
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.07
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.03
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.03
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.77
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.59
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.32
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.18
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.98
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.72
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.51
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.27
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.23
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.93
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.9
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.59
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.51
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.19
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.14
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.13
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.94
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.56
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.13
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.81
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.19
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.48
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.43
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.21
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.95
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.71
d1y0jb1	36	U-shaped transcription factor, different fingers {	87.91
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	86.8
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.76
d1y0jb1	36	U-shaped transcription factor, different fingers {	83.41
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	82.62
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	81.02
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.01

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.7e-16  Score=114.01  Aligned_cols=51  Identities=35%  Similarity=0.761  Sum_probs=49.2

Q ss_pred             CCccccCCCCCccccChhhhhhhhc-ccCCCceecc-CCCccCChhHHHHHHHhh
Q 009831          355 DKSYVCSRCNTKKFSVIADLKTHEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       355 ~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~H  407 (524)
                      ||||+|+ || |.|.....|+.|++ |+|++||.|. ||++|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cg-k~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CG-KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TS-CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CC-CeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 99 99999999999999 9999999999 999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.6e-13  Score=100.90  Aligned_cols=53  Identities=26%  Similarity=0.429  Sum_probs=45.3

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCCCCChhhhcCccccCCCCCCccccccCCCCCcccCcCcCCccccchhhcccc
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSSEPMLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKN  347 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~ef~~~~~L~~H~~~h~~~h~~ekpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~  347 (524)
                      ||+|+| .|||.|.....|..|+++|+++                     +||.|++||          +.|.....|..
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~e---------------------kpy~C~~C~----------k~F~~~~~L~~   48 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGL---------------------RPYGCGVCG----------KKFKMKHHLVG   48 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCC---------------------CSEECTTTS----------CEESSSHHHHH
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccc---------------------cCCcCCCcC----------CEecCHHHHHH
Confidence            689999 5999999999999999999998                     999999998          66666666666


Q ss_pred             ceeee
Q 009831          348 HYKRT  352 (524)
Q Consensus       348 H~~~h  352 (524)
                      |+++|
T Consensus        49 H~r~H   53 (53)
T d2csha1          49 HMKIH   53 (53)
T ss_dssp             HHTTT
T ss_pred             HHhcC
Confidence            66554

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.4e-12  Score=87.68  Aligned_cols=35  Identities=26%  Similarity=0.537  Sum_probs=28.9

Q ss_pred             hhhc-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          376 THEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       376 ~H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|++ |+++|||.|. |||+|.++++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5777 8888888888 888888888888888888874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-11  Score=80.40  Aligned_cols=31  Identities=35%  Similarity=0.758  Sum_probs=28.3

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |+|||||.|. |||+|.+++.|.+|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            7899999999 999999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=3.5e-11  Score=81.22  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             hhc-ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          377 HEK-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       377 H~r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |.| |+|||||+|. |+|+|.++++|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            778 9999999999 99999999999999999864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.8e-11  Score=79.29  Aligned_cols=32  Identities=31%  Similarity=0.653  Sum_probs=28.6

Q ss_pred             c-ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          379 K-HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       379 r-Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      | |+|||||+|. |||+|.+++.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5 8999999999 999999999999999999864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.2e-11  Score=81.03  Aligned_cols=27  Identities=41%  Similarity=0.892  Sum_probs=16.0

Q ss_pred             CCceecc-CCCccCChhHHHHHHH-hhcC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIA-LFQG  409 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r-~Htg  409 (524)
                      +|||+|. |||+|.++++|.+|++ +|+|
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~   31 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTS   31 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCC
Confidence            4566666 6666666666666653 4665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.4e-11  Score=80.45  Aligned_cols=36  Identities=31%  Similarity=0.618  Sum_probs=34.8

Q ss_pred             cceeeecCCCccccCCCCCccccChhhhhhhhc-ccCC
Q 009831          347 NHYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGK  383 (524)
Q Consensus       347 ~H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htge  383 (524)
                      +|+++|+++|||+|++|| |.|...++|.+|++ |+||
T Consensus         2 rH~~~Ht~ekpy~C~~Cg-K~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECG-KSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSC-CBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCC-ceeeCHHHHHHhCccCCCC
Confidence            689999999999999999 99999999999999 9997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.1e-10  Score=77.41  Aligned_cols=31  Identities=23%  Similarity=0.558  Sum_probs=28.0

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |+|||||+|. |+|+|+++++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            7899999999 999999999999999999863

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.6e-10  Score=78.56  Aligned_cols=35  Identities=34%  Similarity=0.667  Sum_probs=32.8

Q ss_pred             CCCccccCCCCCccccChhhhhhhhc--ccCCCceecc
Q 009831          354 CDKSYVCSRCNTKKFSVIADLKTHEK--HCGKDKWLCS  389 (524)
Q Consensus       354 ~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htgekpy~C~  389 (524)
                      .+|||+|.+|| |.|...++|++|++  |+|||||.|+
T Consensus         2 ~~Kpy~C~~Cg-k~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCG-KGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSC-CEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCC-CCcCChHHhhccCcCccCCCcCcCCc
Confidence            47999999999 99999999999974  9999999995

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=9.5e-11  Score=83.26  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             hhhhhhhcccCCCceecc---CCCccCChhHHHHHHHhhcCCC
Q 009831          372 ADLKTHEKHCGKDKWLCS---CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       372 s~L~~H~rHtgekpy~C~---Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      ..|.+|++|+|||||.|.   |+|+|.++++|+.|+++|+|++
T Consensus         5 ~~l~~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhhccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            456667678888888884   8888888888888888888864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.2e-10  Score=71.99  Aligned_cols=27  Identities=37%  Similarity=0.711  Sum_probs=23.8

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ||||+|. |+|+|.++++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6889998 99999999999999999886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.2e-10  Score=74.15  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=30.6

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      |+++|||+|.+|||+|...+.|+.|+|+|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            67999999999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.4e-10  Score=75.18  Aligned_cols=30  Identities=23%  Similarity=0.506  Sum_probs=25.4

Q ss_pred             ccCCCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          380 HCGKDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       380 Htgekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |+|||||.|. |+|+|+++++|++|++.+++
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            8899999999 99999999999999766544

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.88  E-value=4.2e-10  Score=71.47  Aligned_cols=28  Identities=21%  Similarity=0.577  Sum_probs=19.9

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |||.|. |||+|.+++.|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            567777 7777777777777777777754

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.9e-10  Score=70.36  Aligned_cols=28  Identities=36%  Similarity=0.662  Sum_probs=20.2

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |||.|. |||+|.+++.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            567777 7777777777777777777753

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=6.5e-10  Score=69.80  Aligned_cols=28  Identities=32%  Similarity=0.687  Sum_probs=26.8

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      ||||+|.+|+|.|.+..+|.+|||+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.2e-09  Score=72.29  Aligned_cols=32  Identities=28%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             ccCCcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          265 ILAPHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       265 ~~~~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++++|||+|.+|+|.|.++.+|++|||+|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57999999999999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.5e-09  Score=73.06  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             ceeeecCCCccccCCCCCccccChhhhhhhhc-ccC
Q 009831          348 HYKRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCG  382 (524)
Q Consensus       348 H~~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htg  382 (524)
                      |.|.|+++|||+|.+|+ |.|.++++|++|++ |.+
T Consensus         2 h~R~HTgeKPy~C~~C~-k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCD-RSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTC-CCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCC-CEecCHHHHHHHHhcCcC
Confidence            77899999999999999 99999999999999 875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.74  E-value=1.5e-09  Score=68.87  Aligned_cols=28  Identities=32%  Similarity=0.745  Sum_probs=26.8

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      |||.|++|+ |.|.+.++|++|++ |+|||
T Consensus         1 kp~~C~~C~-k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCT-RAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTC-CCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCC-CCCCCchHcccccCcccCCC
Confidence            699999999 99999999999999 99996

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-09  Score=72.92  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=30.9

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      |+|+++|||+|.+|+ |+|.+.++|++|++ |+++.
T Consensus         1 R~HTgekPy~C~~C~-k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCD-KTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSS-CEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCC-CCcCCHhHHHHhCcccCCCC
Confidence            578999999999999 99999999999999 98763

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.7e-09  Score=67.59  Aligned_cols=28  Identities=36%  Similarity=0.686  Sum_probs=26.9

Q ss_pred             CccccCCCCCccccChhhhhhhhc-ccCCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      |||.|.+|+ |.|.++++|.+|+| |+|||
T Consensus         1 Kpy~C~~C~-k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECP-KRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTT-CCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCC-CeecchHHhhhhcCccCCcC
Confidence            799999999 99999999999999 99996

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.2e-09  Score=76.05  Aligned_cols=39  Identities=23%  Similarity=0.449  Sum_probs=35.3

Q ss_pred             ccccceeeecCCCccccCC--CCCccccChhhhhhhhc-ccCCC
Q 009831          344 CVKNHYKRTHCDKSYVCSR--CNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       344 ~L~~H~~~h~~~Kpy~C~~--C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      .|..|++ |+++|||+|.+  |+ |.|.+.++|++|++ |+|||
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~-k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCT-KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCC-CEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCC-ccccCchHHHhhcccccCCC
Confidence            4566774 99999999988  99 99999999999999 99996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.6e-09  Score=64.80  Aligned_cols=25  Identities=28%  Similarity=0.701  Sum_probs=21.4

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhc
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |||+|. |||+|.+++.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            688888 8888888888888888885

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.1e-09  Score=69.03  Aligned_cols=27  Identities=37%  Similarity=0.733  Sum_probs=25.4

Q ss_pred             ceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          270 THFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       270 ~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      .|.|+.  |||.|.+..+|++||++|+|+
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Htge   29 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHSDT   29 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTS
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeCCC
Confidence            388987  999999999999999999999

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.2e-09  Score=63.75  Aligned_cols=26  Identities=35%  Similarity=0.594  Sum_probs=24.9

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      |||+|.+|||+|...+.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999994

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.5e-09  Score=66.29  Aligned_cols=28  Identities=32%  Similarity=0.775  Sum_probs=20.3

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcCCC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQGHT  411 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg~k  411 (524)
                      |||.|+   |||+|++.++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            577774   7777777777777777777753

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.9e-09  Score=65.65  Aligned_cols=27  Identities=30%  Similarity=0.674  Sum_probs=22.8

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |||.|.   |||+|+++++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            688886   888888888888888888874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.9e-09  Score=69.82  Aligned_cols=27  Identities=30%  Similarity=0.656  Sum_probs=16.0

Q ss_pred             eecc---CCCccCChhHHHHHHHhhcCCCC
Q 009831          386 WLCS---CGTTFSRKDKLFGHIALFQGHTP  412 (524)
Q Consensus       386 y~C~---Cgk~F~~ks~L~~H~r~Htg~kp  412 (524)
                      |.|.   |||+|.+++.|++|+++|+|++|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC
Confidence            4554   66666666666666666666333

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.2e-09  Score=69.12  Aligned_cols=32  Identities=25%  Similarity=0.536  Sum_probs=28.3

Q ss_pred             eeecCCCccccCCCCCccccChhhhhhhhc--ccC
Q 009831          350 KRTHCDKSYVCSRCNTKKFSVIADLKTHEK--HCG  382 (524)
Q Consensus       350 ~~h~~~Kpy~C~~C~~K~F~~~s~L~~H~r--Htg  382 (524)
                      |+|+++|||+|++|+ |.|+++.+|++|++  |++
T Consensus         1 R~HTgekP~~C~~C~-k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICH-ARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTC-CEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCc-ccccchHHHHHHcccccCC
Confidence            578999999999999 99999999999986  544

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-08  Score=64.93  Aligned_cols=27  Identities=26%  Similarity=0.594  Sum_probs=19.6

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |||+|.   |||+|.++++|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            567775   777777777777777777764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.2e-08  Score=63.72  Aligned_cols=28  Identities=43%  Similarity=0.843  Sum_probs=26.7

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      |||+|++  |||.|.+.++|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.1e-08  Score=63.90  Aligned_cols=28  Identities=46%  Similarity=0.809  Sum_probs=26.5

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      |||+|++  |||+|.+..+|++|||+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899988  999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=4.7e-08  Score=61.58  Aligned_cols=26  Identities=35%  Similarity=0.754  Sum_probs=22.1

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |||+|.   |+|+|.+.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            688886   88888888888888888876

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.1e-08  Score=61.85  Aligned_cols=28  Identities=29%  Similarity=0.891  Sum_probs=25.8

Q ss_pred             CccccC--CCCCccccChhhhhhhhc-ccCCC
Q 009831          356 KSYVCS--RCNTKKFSVIADLKTHEK-HCGKD  384 (524)
Q Consensus       356 Kpy~C~--~C~~K~F~~~s~L~~H~r-Htgek  384 (524)
                      |||.|+  .|+ |.|.+.++|++|+| |+|||
T Consensus         1 kpf~C~~~~C~-k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCG-KRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCC-CBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCC-cCcCChhHhhhhcCcccccC
Confidence            689996  499 99999999999999 99996

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=1.2e-07  Score=61.04  Aligned_cols=27  Identities=26%  Similarity=0.562  Sum_probs=22.1

Q ss_pred             CCceecc---CCCccCChhHHHHHHHhhcC
Q 009831          383 KDKWLCS---CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       383 ekpy~C~---Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ||||.|.   |||+|++.++|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            6788886   88888888888888888875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.4e-07  Score=55.05  Aligned_cols=26  Identities=46%  Similarity=0.942  Sum_probs=24.5

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      |++|+.|+|.|.++..|++|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            58999999999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.2e-07  Score=59.10  Aligned_cols=25  Identities=24%  Similarity=0.638  Sum_probs=19.6

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhc
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |||.|+   |||+|++.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            577886   8888888888888888775

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=3.3e-07  Score=59.03  Aligned_cols=29  Identities=28%  Similarity=0.572  Sum_probs=27.0

Q ss_pred             CcceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ||||.|.+  |||.|.+..+|++|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999998  999999999999999999864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.1e-07  Score=54.30  Aligned_cols=25  Identities=48%  Similarity=0.845  Sum_probs=16.0

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhcC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |++|+ |+|.|++++.|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45666 66666666666666666654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=1.9e-07  Score=58.75  Aligned_cols=27  Identities=33%  Similarity=0.703  Sum_probs=25.5

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~~  295 (524)
                      |||+|++  |+|.|.+..+|++|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999976

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.7e-07  Score=56.33  Aligned_cols=26  Identities=31%  Similarity=0.708  Sum_probs=24.6

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~  294 (524)
                      |||.|++  |||.|.+..+|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998  9999999999999999995

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1e-06  Score=53.05  Aligned_cols=26  Identities=27%  Similarity=0.666  Sum_probs=23.3

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhc
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      ||||.|+ ||+.|.+.+..++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            6899999 9999999999999999884

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=4.3e-06  Score=50.29  Aligned_cols=27  Identities=30%  Similarity=0.610  Sum_probs=25.5

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      +|||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999994

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.8e-06  Score=53.09  Aligned_cols=29  Identities=28%  Similarity=0.624  Sum_probs=20.6

Q ss_pred             ccccCCCCCccccChhhhhhhhc-ccCCCce
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK-HCGKDKW  386 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r-Htgekpy  386 (524)
                      ...|+.|| |.|....+|.+|.. |+|||||
T Consensus         5 ~~~ce~cg-k~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICG-KIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTT-EEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHH-HHHHHHHHHHhhhcccCCCCCC
Confidence            35677777 77777777777776 7777776

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.9e-06  Score=49.86  Aligned_cols=27  Identities=33%  Similarity=0.787  Sum_probs=24.3

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      ||||.|+ |+.+|.+++.+.-|+|.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            6899999 99999999999999999877

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.3e-05  Score=50.07  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=27.4

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCCCCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGHTPA  413 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~kp~  413 (524)
                      |...|+ |||.|.....|.+|...|+|++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            557899 999999999999999999998776

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.6e-05  Score=47.17  Aligned_cols=25  Identities=32%  Similarity=0.719  Sum_probs=17.8

Q ss_pred             eecc-CCCccCChhHHHHHHHhhcCC
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +.|. |||+|...+.|++|+.+|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4677 777777777777777777763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2e-05  Score=46.78  Aligned_cols=27  Identities=37%  Similarity=0.722  Sum_probs=25.1

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      .+.|.+|||.|...+.|++|+.+|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            478999999999999999999999985

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.2e-05  Score=47.79  Aligned_cols=26  Identities=19%  Similarity=0.629  Sum_probs=22.4

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |||.|.   |+|+++..++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            688897   99999999999999998765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.3e-05  Score=46.76  Aligned_cols=27  Identities=19%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             CCceecc-CCCccCChhHHHHHHHhhcC
Q 009831          383 KDKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       383 ekpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |+||+|. |...-...+.|..|+|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4667777 77777777777777777766

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.3e-05  Score=47.78  Aligned_cols=29  Identities=31%  Similarity=0.710  Sum_probs=27.2

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +|||.|++|+..|+++..+..|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=8.6e-05  Score=44.43  Aligned_cols=25  Identities=24%  Similarity=0.542  Sum_probs=17.2

Q ss_pred             eecc-CCCccCChhHHHHHHHhhcCC
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |.|. ||....-.+-|++|+|+|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            6666 777777777777777777664

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0001  Score=44.87  Aligned_cols=27  Identities=22%  Similarity=0.556  Sum_probs=24.4

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~~  295 (524)
                      |||.|.+  |+|++...+.|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899998  99999999999999997654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00013  Score=43.66  Aligned_cols=27  Identities=33%  Similarity=0.612  Sum_probs=25.4

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      .|.|+.||......+-|+.|+|.|+++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCC
Confidence            389999999999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00013  Score=43.48  Aligned_cols=29  Identities=24%  Similarity=0.576  Sum_probs=26.8

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++||+|..|...-...+.|..|+|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57999999999999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00019  Score=41.86  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=13.3

Q ss_pred             ecc-CCCccCChhHHHHHHHhhcCC
Q 009831          387 LCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       387 ~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +|+ |.|+|..+..|+.|-|.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            355 555555555555555555554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00019  Score=42.33  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=25.2

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      |||+|..|...-...+.|..|+|+|..
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCcccccccchhcchhhHhhhhhcccC
Confidence            789999999999999999999999963

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00022  Score=41.63  Aligned_cols=25  Identities=36%  Similarity=0.603  Sum_probs=24.0

Q ss_pred             ecCCCCCccCChHHHHHHHhhhCCC
Q 009831          272 FCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       272 ~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +|+.|.|.|..+..|+.|-|.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999999987

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.00  E-value=0.0002  Score=42.71  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhh
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~H  407 (524)
                      .||+|.   |+|+|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            488997   999999999999999887

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00023  Score=41.99  Aligned_cols=25  Identities=16%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhc
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |||+|. |...-...+.|.+|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            678888 8888888888888888874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.93  E-value=0.00026  Score=42.45  Aligned_cols=27  Identities=22%  Similarity=0.484  Sum_probs=23.1

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |||.|.   |.|.|.....|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            588886   999999999999998888874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0002  Score=43.09  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=14.6

Q ss_pred             CccccCCCCCccccChhhhhhhhc--ccCC
Q 009831          356 KSYVCSRCNTKKFSVIADLKTHEK--HCGK  383 (524)
Q Consensus       356 Kpy~C~~C~~K~F~~~s~L~~H~r--Htge  383 (524)
                      |||.|.+|. .+-...++|+.|++  |..|
T Consensus         1 kpy~cqyc~-yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCE-FRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSS-CCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccc-cccccchhhhhhhhcccccC
Confidence            455555555 55555555555555  4443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00037  Score=41.62  Aligned_cols=29  Identities=34%  Similarity=0.784  Sum_probs=26.7

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +..|.|..|...|++.-.|+.||..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45699999999999999999999999985

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00024  Score=43.57  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             Cceecc---CCCccCChhHHHHHH-HhhcC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHI-ALFQG  409 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~-r~Htg  409 (524)
                      |||.|.   |.|+|+..+...+|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            577776   788888777777776 77653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.75  E-value=0.00035  Score=40.10  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             eecc-CCCccCChhHHHHHHHhhc
Q 009831          386 WLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |+|. |.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            6788 8888888888888888873

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.71  E-value=0.00058  Score=44.47  Aligned_cols=29  Identities=28%  Similarity=0.627  Sum_probs=26.6

Q ss_pred             CcceecCCCCCccCChHHHHHHHhhhCCC
Q 009831          268 PHTHFCTICGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       268 ~k~~~C~~CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      .+.|+|.+|+|.|.+...|--||+.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            46799999999999999999999999765

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00047  Score=45.26  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=22.4

Q ss_pred             cCCCceecc-CCCccCChhHHHHHHHh
Q 009831          381 CGKDKWLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       381 tgekpy~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      +|-|||.|. |+|.|...+.+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            578899999 99999999999999754

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.64  E-value=0.00057  Score=39.20  Aligned_cols=24  Identities=29%  Similarity=0.582  Sum_probs=22.7

Q ss_pred             eecCCCCCccCChHHHHHHHhhhC
Q 009831          271 HFCTICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~H~  294 (524)
                      |+|..|.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999985

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.59  E-value=0.00066  Score=40.44  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=23.1

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhh
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGH  293 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H  293 (524)
                      .||+|+.  |+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4799986  999999999999999988

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.47  E-value=0.00056  Score=41.89  Aligned_cols=25  Identities=32%  Similarity=0.829  Sum_probs=19.5

Q ss_pred             ceecc-CCCccCChhHHHHHH-HhhcC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHI-ALFQG  409 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~-r~Htg  409 (524)
                      ||.|. |++.|++++-|.+|+ ++|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            68888 888888888888885 45655

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0011  Score=42.94  Aligned_cols=27  Identities=30%  Similarity=0.683  Sum_probs=24.6

Q ss_pred             CCCceecc---CCCccCChhHHHHHHHhhc
Q 009831          382 GKDKWLCS---CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       382 gekpy~C~---Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      .+|||.|.   |+.+|.+.+.|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            58999996   9999999999999999885

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.001  Score=39.66  Aligned_cols=22  Identities=27%  Similarity=0.659  Sum_probs=20.3

Q ss_pred             ceecc-CCCccCChhHHHHHHHh
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      ||.|. |..+|.++.+|.+||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999 99999999999999986

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.25  E-value=0.0014  Score=42.54  Aligned_cols=27  Identities=26%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      +.|.|. |+|.|....+|-.||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            467888 888888888888888887553

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.21  E-value=0.0013  Score=39.29  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=25.4

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      +||.|..  |.|.|..-..|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5799986  999999999999999999875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0025  Score=37.93  Aligned_cols=27  Identities=33%  Similarity=0.621  Sum_probs=17.9

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      .-|.|. |...|.+.-.|+.||..|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            346666 777777777777777766663

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0022  Score=38.40  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=23.3

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      |||.|. |..+....++|+.|+++-++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            699999 99999999999999998543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0013  Score=40.26  Aligned_cols=28  Identities=29%  Similarity=0.618  Sum_probs=25.1

Q ss_pred             cceecCC--CCCccCChHHHHHHH-hhhCCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHM-RGHGDE  296 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~-r~H~~e  296 (524)
                      |||.|..  |.|.|...+.-..|+ |+|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6899998  999999999999997 899754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0027  Score=37.87  Aligned_cols=23  Identities=39%  Similarity=0.735  Sum_probs=21.6

Q ss_pred             ceecCCCCCccCChHHHHHHHhh
Q 009831          270 THFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      ||.|..|...|+++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            69999999999999999999974

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0041  Score=37.14  Aligned_cols=26  Identities=23%  Similarity=0.561  Sum_probs=15.8

Q ss_pred             Cceecc-CCCccCChhHHHHHHHhhcC
Q 009831          384 DKWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       384 kpy~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      +||+|. |..--.+.++|.+|++..+|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            456666 66666666666666665444

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0053  Score=40.14  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.8

Q ss_pred             CCcceecCCCCCccCChHHHHHHHh
Q 009831          267 APHTHFCTICGKGFKRDANLRMHMR  291 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~r  291 (524)
                      +-|||.|.+|+|.|-....+.+|.-
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5689999999999999999999964

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0051  Score=38.81  Aligned_cols=26  Identities=23%  Similarity=0.602  Sum_probs=18.6

Q ss_pred             ceecc---CC---CccCChhHHHHHHHhhcCC
Q 009831          385 KWLCS---CG---TTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       385 py~C~---Cg---k~F~~ks~L~~H~r~Htg~  410 (524)
                      .|.|.   |.   +.|..+..|..|||+||||
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            45664   53   4588888888888888874

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.0071  Score=35.39  Aligned_cols=22  Identities=36%  Similarity=0.791  Sum_probs=18.2

Q ss_pred             ceecc-CCCccCChhHHHHHHHh
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      ||+|. |||.+-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68888 88888888888888654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.98  E-value=0.0049  Score=37.61  Aligned_cols=26  Identities=35%  Similarity=0.721  Sum_probs=23.3

Q ss_pred             ccccCCCCCccccChhhhhhhhc--ccCC
Q 009831          357 SYVCSRCNTKKFSVIADLKTHEK--HCGK  383 (524)
Q Consensus       357 py~C~~C~~K~F~~~s~L~~H~r--Htge  383 (524)
                      ||.|.+|+ +.|+++.-|.+|..  |.|.
T Consensus         1 Pf~C~~C~-R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCN-RAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTC-CEESSHHHHHHHHTTTSCCS
T ss_pred             Cccccccc-chhhHHHHHHHHHHHHhcCc
Confidence            79999999 99999999999985  8764

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.0087  Score=34.16  Aligned_cols=21  Identities=33%  Similarity=0.759  Sum_probs=18.6

Q ss_pred             ceecc-CCCccCChhHHHHHHH
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIA  405 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r  405 (524)
                      ||+|. |...|.++..|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            78999 9999999999999975

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.013  Score=34.40  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=23.6

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      |-+|+.|..+...+..|+.|.|+|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999999953

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.013  Score=36.47  Aligned_cols=25  Identities=36%  Similarity=0.861  Sum_probs=22.1

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhcC
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQG  409 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Htg  409 (524)
                      .|.|. |||+|.+...+.+|....+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48999 99999999999999887766

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.013  Score=34.89  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             cceecCCCCCccCChHHHHHHHhhh
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGH  293 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H  293 (524)
                      +||+|..|..--++.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            5899999999999999999999753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.02  Score=36.82  Aligned_cols=28  Identities=29%  Similarity=0.655  Sum_probs=24.8

Q ss_pred             CCcceecC--CCCCccCChHHHHHHHhhhC
Q 009831          267 APHTHFCT--ICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       267 ~~k~~~C~--~CgK~F~~~~~L~~H~r~H~  294 (524)
                      .+|||.|.  -|+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            37899995  59999999999999998884

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.017  Score=39.02  Aligned_cols=27  Identities=37%  Similarity=0.615  Sum_probs=24.2

Q ss_pred             cceecCCCCCccCChHHHHHHHhhhCC
Q 009831          269 HTHFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       269 k~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      -.|.|..|||.|.....|+.|...|.-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            358999999999999999999998864

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.013  Score=34.39  Aligned_cols=21  Identities=24%  Similarity=0.640  Sum_probs=10.1

Q ss_pred             cccCCCCCccccChhhhhhhhc
Q 009831          358 YVCSRCNTKKFSVIADLKTHEK  379 (524)
Q Consensus       358 y~C~~C~~K~F~~~s~L~~H~r  379 (524)
                      |.|+.|+ ....++++|+.|++
T Consensus         3 ~qcphc~-tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCD-TVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSS-CEESSHHHHHHHHH
T ss_pred             ccCCcch-hheeehhhhhHHhh
Confidence            4444444 44444444444444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=0.022  Score=33.20  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=20.1

Q ss_pred             ceecCCCCCccCChHHHHHHHh
Q 009831          270 THFCTICGKGFKRDANLRMHMR  291 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r  291 (524)
                      ||+|..|||.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999999964

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.19  E-value=0.027  Score=34.04  Aligned_cols=27  Identities=30%  Similarity=0.829  Sum_probs=23.9

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhcCC
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQGH  410 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Htg~  410 (524)
                      |.|.|.   |+-.|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            578897   999999999999999999884

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.14  E-value=0.028  Score=32.01  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.8

Q ss_pred             ceecCCCCCccCChHHHHHHHh
Q 009831          270 THFCTICGKGFKRDANLRMHMR  291 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r  291 (524)
                      ||+|..|...|-.+..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999984

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.13  E-value=0.028  Score=32.69  Aligned_cols=23  Identities=26%  Similarity=0.683  Sum_probs=20.2

Q ss_pred             eecc---CCCccCChhHHHHHHHhhc
Q 009831          386 WLCS---CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       386 y~C~---Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |.|.   |+|.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7786   9999999999999998886

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.94  E-value=0.033  Score=31.83  Aligned_cols=21  Identities=33%  Similarity=0.865  Sum_probs=19.1

Q ss_pred             eecc-CCCccCChhHHHHHHHh
Q 009831          386 WLCS-CGTTFSRKDKLFGHIAL  406 (524)
Q Consensus       386 y~C~-Cgk~F~~ks~L~~H~r~  406 (524)
                      |.|+ |-|.|++++++..|+++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899 99999999999999886

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.038  Score=32.39  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhc
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |-+|. |.++...+..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            56788 8888888888888888874

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.046  Score=31.97  Aligned_cols=23  Identities=26%  Similarity=0.635  Sum_probs=21.4

Q ss_pred             ceecCCCCCccCChHHHHHHHhh
Q 009831          270 THFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      .|.|+.|+....+++.|+.|+|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999985

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.037  Score=34.75  Aligned_cols=20  Identities=40%  Similarity=0.484  Sum_probs=18.3

Q ss_pred             CCccCChHHHHHHHhhhCCC
Q 009831          277 GKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       277 gK~F~~~~~L~~H~r~H~~e  296 (524)
                      ++.|+....|..|||+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            57799999999999999986

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.19  E-value=0.086  Score=30.04  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             eecCCCCCccCChHHHHHHHhh
Q 009831          271 HFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       271 ~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      |.|+.|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            8899999999999999999875

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.1  Score=32.32  Aligned_cols=26  Identities=27%  Similarity=0.623  Sum_probs=22.8

Q ss_pred             ceecCCCCCccCChHHHHHHHhhhCC
Q 009831          270 THFCTICGKGFKRDANLRMHMRGHGD  295 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~H~~  295 (524)
                      .|.|..|||.|.++..+.+|-....|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            49999999999999999999876554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.077  Score=31.16  Aligned_cols=21  Identities=19%  Similarity=0.526  Sum_probs=18.6

Q ss_pred             ecc---CCCccCChhHHHHHHHhh
Q 009831          387 LCS---CGTTFSRKDKLFGHIALF  407 (524)
Q Consensus       387 ~C~---Cgk~F~~ks~L~~H~r~H  407 (524)
                      .|+   |+|.|...+.+++|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            576   999999999999999887

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.076  Score=35.74  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             ceecc-CCCccCChhHHHHHHHhhc
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      -|.|. |||.|.....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            47899 9999999999999998874

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.13  Score=30.12  Aligned_cols=23  Identities=35%  Similarity=0.820  Sum_probs=20.3

Q ss_pred             ecCC--CCCccCChHHHHHHHhhhC
Q 009831          272 FCTI--CGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       272 ~C~~--CgK~F~~~~~L~~H~r~H~  294 (524)
                      .|+.  |+|.|+..+.++.|+.+|+
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            4664  9999999999999999985

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.71  E-value=0.12  Score=29.89  Aligned_cols=24  Identities=38%  Similarity=0.794  Sum_probs=20.8

Q ss_pred             eecC--CCCCccCChHHHHHHHhhhC
Q 009831          271 HFCT--ICGKGFKRDANLRMHMRGHG  294 (524)
Q Consensus       271 ~~C~--~CgK~F~~~~~L~~H~r~H~  294 (524)
                      |.|.  -|+|.|+....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            6675  49999999999999998875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.91  E-value=0.12  Score=31.70  Aligned_cols=21  Identities=38%  Similarity=0.836  Sum_probs=18.2

Q ss_pred             ceecc-CCCccCChhHHHHHHH
Q 009831          385 KWLCS-CGTTFSRKDKLFGHIA  405 (524)
Q Consensus       385 py~C~-Cgk~F~~ks~L~~H~r  405 (524)
                      .|.|. ||-+|+..+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            58899 9999999999998875

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=86.80  E-value=0.32  Score=28.74  Aligned_cols=25  Identities=24%  Similarity=0.651  Sum_probs=19.9

Q ss_pred             Cceecc---CCCccCChhHHHHHHHhhc
Q 009831          384 DKWLCS---CGTTFSRKDKLFGHIALFQ  408 (524)
Q Consensus       384 kpy~C~---Cgk~F~~ks~L~~H~r~Ht  408 (524)
                      |.|.|+   |.-+|.++.++++|....+
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhc
Confidence            458887   9999999999999976543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.76  E-value=0.32  Score=29.20  Aligned_cols=28  Identities=25%  Similarity=0.718  Sum_probs=24.9

Q ss_pred             cceecCC--CCCccCChHHHHHHHhhhCCC
Q 009831          269 HTHFCTI--CGKGFKRDANLRMHMRGHGDE  296 (524)
Q Consensus       269 k~~~C~~--CgK~F~~~~~L~~H~r~H~~e  296 (524)
                      |.|.|..  |+..|...-.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5688975  999999999999999999885

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.41  E-value=0.37  Score=29.51  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=22.0

Q ss_pred             CCcceecCCCCCccCChHHHHHHHh
Q 009831          267 APHTHFCTICGKGFKRDANLRMHMR  291 (524)
Q Consensus       267 ~~k~~~C~~CgK~F~~~~~L~~H~r  291 (524)
                      .+..|.|.-||-.|...+.|..|+.
T Consensus         5 kparf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cccceeccccceeecChhHHHhhhh
Confidence            4567999999999999999999964

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.62  E-value=0.34  Score=31.12  Aligned_cols=24  Identities=29%  Similarity=0.646  Sum_probs=18.2

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCC
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCN  364 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~  364 (524)
                      +-|.|++||                       -++.++.|-+|++|+
T Consensus         4 ~~~~C~vCG-----------------------~i~~g~~P~~CPvCg   27 (37)
T d1nnqa2           4 KVYICPICG-----------------------YTAVDEAPEYCPVCG   27 (37)
T ss_dssp             CEEECTTTC-----------------------CEEESCCCSBCTTTC
T ss_pred             cEEECCCCC-----------------------CEecCCCCCcCCCCC
Confidence            668899998                       234566788899988

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=81.02  E-value=0.46  Score=30.29  Aligned_cols=24  Identities=25%  Similarity=0.402  Sum_probs=18.3

Q ss_pred             ccccCCCCCcccCcCcCCccccchhhccccceeeecCCCccccCCCC
Q 009831          318 KRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYVCSRCN  364 (524)
Q Consensus       318 kpy~C~~Cgc~~~~~~~~~k~f~~~~~L~~H~~~h~~~Kpy~C~~C~  364 (524)
                      +-|.|++||                       -++.++.|-+|++|+
T Consensus         4 ~~~vC~vCG-----------------------yi~~g~~Pe~CPvCg   27 (36)
T d1yuza2           4 KFHLCPICG-----------------------YIHKGEDFEKCPICF   27 (36)
T ss_dssp             CEEECSSSC-----------------------CEEESSCCSBCTTTC
T ss_pred             CEEECCCCC-----------------------CEeeCCCCCcCCCCC
Confidence            678899998                       245566778899888

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=0.23  Score=36.36  Aligned_cols=23  Identities=35%  Similarity=0.723  Sum_probs=21.0

Q ss_pred             ceecCCCCCccCChHHHHHHHhh
Q 009831          270 THFCTICGKGFKRDANLRMHMRG  292 (524)
Q Consensus       270 ~~~C~~CgK~F~~~~~L~~H~r~  292 (524)
                      .|.|..|+|.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            49999999999999999999864