Query 009832
Match_columns 524
No_of_seqs 189 out of 1825
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 1.6E-81 3.5E-86 724.8 45.2 492 1-518 582-1131(1204)
2 KOG1934 Predicted membrane pro 100.0 4.7E-76 1E-80 650.4 34.4 433 15-519 274-760 (868)
3 PF02460 Patched: Patched fami 100.0 8.4E-75 1.8E-79 657.3 38.0 449 1-519 226-728 (798)
4 TIGR00918 2A060602 The Eukaryo 100.0 2.4E-74 5.2E-79 652.5 40.5 490 1-518 409-1047(1145)
5 KOG1933 Cholesterol transport 100.0 2.7E-65 5.8E-70 568.8 11.7 501 1-519 559-1103(1201)
6 KOG1935 Membrane protein Patch 100.0 6.1E-59 1.3E-63 487.6 25.9 489 1-520 422-1002(1143)
7 COG1033 Predicted exporters of 100.0 9.6E-43 2.1E-47 378.3 40.0 409 22-520 218-652 (727)
8 TIGR00921 2A067 The (Largely A 100.0 3.8E-37 8.3E-42 347.3 42.5 405 24-520 217-651 (719)
9 TIGR00833 actII Transport prot 100.0 1.2E-29 2.5E-34 290.9 42.7 204 26-231 199-431 (910)
10 TIGR03480 HpnN hopanoid biosyn 100.0 9.7E-28 2.1E-32 274.7 41.1 431 26-518 295-794 (862)
11 PF12349 Sterol-sensing: Stero 99.9 6E-26 1.3E-30 206.0 15.8 135 19-153 1-135 (153)
12 TIGR00920 2A060605 3-hydroxy-3 99.9 3.7E-25 7.9E-30 239.7 13.7 144 1-151 72-216 (886)
13 TIGR00921 2A067 The (Largely A 99.8 1.5E-17 3.2E-22 188.2 25.8 270 164-518 4-275 (719)
14 COG1033 Predicted exporters of 99.7 1.7E-16 3.6E-21 173.8 14.6 132 21-153 589-720 (727)
15 PRK13024 bifunctional preprote 99.7 2.2E-14 4.8E-19 160.6 31.5 126 26-152 290-416 (755)
16 PF03176 MMPL: MMPL family; I 99.7 2.6E-16 5.7E-21 161.7 13.8 136 20-156 164-304 (333)
17 PRK10614 multidrug efflux syst 99.6 4.9E-13 1.1E-17 155.9 34.2 179 26-207 358-578 (1025)
18 TIGR00915 2A0602 The (Largely 99.6 9.6E-13 2.1E-17 153.6 28.6 124 27-151 365-493 (1044)
19 PRK09579 multidrug efflux prot 99.5 7.2E-12 1.6E-16 145.8 33.8 125 27-152 358-486 (1017)
20 TIGR00914 2A0601 heavy metal e 99.5 7.8E-12 1.7E-16 146.5 33.1 159 27-190 368-563 (1051)
21 PRK10503 multidrug efflux syst 99.5 3.3E-12 7.1E-17 149.0 29.3 126 26-152 367-496 (1040)
22 PRK14726 bifunctional preprote 99.5 2E-11 4.3E-16 136.8 32.1 126 26-152 396-522 (855)
23 PRK09577 multidrug efflux prot 99.5 9.5E-12 2.1E-16 145.2 27.5 125 27-152 364-493 (1032)
24 PRK10555 aminoglycoside/multid 99.5 2.6E-11 5.7E-16 141.6 28.9 125 27-152 365-494 (1037)
25 TIGR03480 HpnN hopanoid biosyn 99.5 4.4E-13 9.5E-18 154.2 13.8 121 24-151 736-856 (862)
26 PRK15127 multidrug efflux syst 99.4 2.5E-11 5.3E-16 141.8 26.9 124 27-151 365-493 (1049)
27 PRK13023 bifunctional preprote 99.4 1.3E-10 2.7E-15 128.9 30.4 126 26-152 302-428 (758)
28 COG2409 Predicted drug exporte 99.4 8.4E-12 1.8E-16 143.7 18.4 209 20-230 204-441 (937)
29 TIGR00916 2A0604s01 protein-ex 99.4 2.2E-12 4.8E-17 121.6 10.0 117 26-143 72-191 (192)
30 TIGR00833 actII Transport prot 99.3 1E-11 2.3E-16 143.2 14.3 129 25-154 769-903 (910)
31 PF00873 ACR_tran: AcrB/AcrD/A 99.3 2.3E-10 4.9E-15 134.3 25.3 160 27-189 358-552 (1021)
32 PRK13022 secF preprotein trans 99.3 1.1E-11 2.3E-16 124.2 10.4 129 24-153 150-281 (289)
33 PF03176 MMPL: MMPL family; I 99.3 3.5E-10 7.6E-15 116.3 20.3 137 383-519 90-231 (333)
34 COG4258 Predicted exporter [Ge 99.2 4.5E-09 9.8E-14 109.8 25.0 190 29-224 285-490 (788)
35 TIGR00918 2A060602 The Eukaryo 99.2 3.9E-10 8.5E-15 130.1 16.6 131 23-156 988-1119(1145)
36 COG0841 AcrB Cation/multidrug 99.1 9.9E-09 2.1E-13 118.2 26.1 182 27-211 356-580 (1009)
37 TIGR00966 3a0501s07 protein-ex 99.0 2.4E-09 5.2E-14 105.1 10.5 121 24-145 121-244 (246)
38 TIGR01129 secD protein-export 98.9 4.1E-09 8.8E-14 110.1 10.6 124 26-150 272-396 (397)
39 PRK05812 secD preprotein trans 98.9 4.5E-09 9.8E-14 112.3 11.0 127 26-153 357-484 (498)
40 PF02460 Patched: Patched fami 98.9 9.5E-09 2.1E-13 117.7 14.2 127 24-152 669-795 (798)
41 PF02355 SecD_SecF: Protein ex 98.9 5.5E-08 1.2E-12 91.3 15.4 131 21-152 51-184 (189)
42 PRK08578 preprotein translocas 98.8 2.5E-08 5.3E-13 100.1 11.8 123 24-153 158-284 (292)
43 PRK12911 bifunctional preprote 98.8 3.3E-08 7.1E-13 112.5 13.6 125 27-152 934-1059(1403)
44 PRK13024 bifunctional preprote 98.8 2.5E-08 5.4E-13 112.2 10.8 130 21-151 597-729 (755)
45 PRK13021 secF preprotein trans 98.7 6.4E-08 1.4E-12 96.8 10.3 127 24-151 149-278 (297)
46 PRK12933 secD preprotein trans 98.7 1.5E-07 3.2E-12 101.5 11.5 126 26-152 464-591 (604)
47 TIGR00914 2A0601 heavy metal e 98.6 2.2E-07 4.8E-12 109.3 10.8 126 26-152 904-1033(1051)
48 TIGR00916 2A0604s01 protein-ex 98.5 5E-07 1.1E-11 85.3 9.4 84 434-518 45-128 (192)
49 PRK14726 bifunctional preprote 98.5 6.7E-07 1.5E-11 100.9 11.2 131 21-152 692-825 (855)
50 TIGR00917 2A060601 Niemann-Pic 98.5 3E-06 6.4E-11 100.1 16.1 126 25-152 1074-1201(1204)
51 PRK10555 aminoglycoside/multid 98.4 1.8E-06 3.8E-11 101.5 12.0 121 395-518 298-420 (1037)
52 PRK09579 multidrug efflux prot 98.3 3.2E-06 6.9E-11 99.1 12.5 118 394-517 290-412 (1017)
53 PRK09577 multidrug efflux prot 98.3 2.1E-06 4.6E-11 100.8 10.9 120 395-517 297-418 (1032)
54 TIGR00915 2A0602 The (Largely 98.3 4E-06 8.7E-11 98.6 12.5 128 26-154 896-1027(1044)
55 PRK15127 multidrug efflux syst 98.3 2.7E-06 5.8E-11 100.0 10.6 126 27-153 898-1028(1049)
56 PRK10614 multidrug efflux syst 98.3 3.7E-06 8E-11 98.8 10.9 119 395-516 292-412 (1025)
57 TIGR00966 3a0501s07 protein-ex 98.2 1.2E-05 2.5E-10 79.1 11.2 84 433-517 95-178 (246)
58 PRK08343 secD preprotein trans 98.2 1.2E-05 2.5E-10 84.6 11.7 115 35-151 296-410 (417)
59 COG0841 AcrB Cation/multidrug 98.2 4.6E-06 1E-10 96.5 9.2 114 394-510 288-403 (1009)
60 PRK10503 multidrug efflux syst 98.2 7.1E-06 1.5E-10 96.4 10.5 127 26-153 890-1021(1040)
61 KOG3664 Predicted patched tran 98.2 7.5E-07 1.6E-11 99.3 2.2 129 21-149 346-494 (999)
62 KOG1934 Predicted membrane pro 98.1 9.5E-06 2.1E-10 91.9 10.4 115 41-156 718-832 (868)
63 COG0341 SecF Preprotein transl 98.1 2E-05 4.3E-10 79.0 11.6 135 19-154 152-289 (305)
64 PRK08578 preprotein translocas 98.1 9.4E-06 2E-10 81.6 9.2 83 434-516 132-214 (292)
65 PF00873 ACR_tran: AcrB/AcrD/A 98.1 4.2E-05 9E-10 90.3 14.3 124 27-151 889-1017(1021)
66 COG4258 Predicted exporter [Ge 98.0 3.1E-05 6.8E-10 81.7 10.3 110 27-148 672-781 (788)
67 TIGR01129 secD protein-export 98.0 4.3E-05 9.4E-10 80.1 10.8 84 433-518 245-328 (397)
68 COG3696 Putative silver efflux 98.0 0.0046 9.9E-08 69.2 26.3 159 27-188 361-550 (1027)
69 PRK13022 secF preprotein trans 97.9 4.5E-05 9.7E-10 76.6 9.6 85 432-517 123-207 (289)
70 PRK12911 bifunctional preprote 97.9 5E-05 1.1E-09 87.3 10.2 130 21-151 1254-1391(1403)
71 COG0342 SecD Preprotein transl 97.9 6.5E-05 1.4E-09 80.7 10.0 132 20-153 362-494 (506)
72 PRK13023 bifunctional preprote 97.9 7.4E-05 1.6E-09 83.6 10.8 128 23-151 600-730 (758)
73 PRK05812 secD preprotein trans 97.5 0.00037 8E-09 75.0 8.5 83 433-517 330-412 (498)
74 KOG1935 Membrane protein Patch 97.2 0.003 6.6E-08 69.4 11.7 131 23-156 941-1072(1143)
75 PF02355 SecD_SecF: Protein ex 97.2 0.0037 8.1E-08 58.8 10.9 85 433-518 28-112 (189)
76 PRK08343 secD preprotein trans 97.2 0.0048 1E-07 65.1 12.7 79 437-515 262-340 (417)
77 COG2409 Predicted drug exporte 97.2 0.0027 5.8E-08 74.1 11.8 125 26-151 783-912 (937)
78 PRK12933 secD preprotein trans 96.7 0.0052 1.1E-07 66.9 8.0 78 437-514 437-517 (604)
79 PRK13021 secF preprotein trans 96.3 0.015 3.3E-07 58.5 8.6 83 434-517 124-206 (297)
80 COG3696 Putative silver efflux 96.1 0.039 8.5E-07 62.0 10.7 101 404-512 307-410 (1027)
81 COG0341 SecF Preprotein transl 96.0 0.022 4.7E-07 57.4 7.6 78 433-511 131-208 (305)
82 COG0342 SecD Preprotein transl 93.8 0.23 5E-06 53.7 8.5 76 436-513 343-418 (506)
83 PF12349 Sterol-sensing: Stero 92.9 0.34 7.4E-06 43.9 7.0 62 459-520 5-67 (153)
84 PF08006 DUF1700: Protein of u 67.5 36 0.00078 31.5 8.9 17 337-353 3-19 (181)
85 KOG1933 Cholesterol transport 66.3 0.71 1.5E-05 54.3 -3.4 113 37-151 1057-1171(1201)
86 PF09946 DUF2178: Predicted me 45.8 1.9E+02 0.0041 24.6 10.4 19 120-138 88-106 (111)
87 COG4709 Predicted membrane pro 39.9 2.4E+02 0.0051 26.5 8.9 173 336-520 2-187 (195)
88 COG3301 NrfD Formate-dependent 39.5 3.9E+02 0.0084 26.9 10.8 94 31-129 140-237 (305)
89 PF14184 YrvL: Regulatory prot 38.4 1.2E+02 0.0025 26.8 6.6 54 465-518 13-70 (132)
90 PF04906 Tweety: Tweety; Inte 37.0 68 0.0015 34.0 5.8 15 493-508 234-248 (406)
91 TIGR02230 ATPase_gene1 F0F1-AT 36.6 98 0.0021 25.9 5.5 51 26-76 42-96 (100)
92 PF14898 DUF4491: Domain of un 34.4 93 0.002 25.6 4.8 31 447-486 42-72 (94)
93 cd07912 Tweety_N N-terminal do 33.5 6E+02 0.013 27.0 12.1 30 473-508 242-271 (418)
94 TIGR02235 menA_cyano-plnt 1,4- 30.3 2.5E+02 0.0054 28.1 8.4 61 22-88 6-66 (285)
95 PRK07419 1,4-dihydroxy-2-napht 28.8 1.9E+02 0.0041 29.3 7.2 59 23-87 20-78 (304)
96 KOG3659 Sodium-neurotransmitte 28.8 86 0.0019 34.6 4.9 45 6-50 343-387 (629)
97 KOG3664 Predicted patched tran 27.4 18 0.0004 41.9 -0.3 54 465-518 833-889 (999)
98 PF06123 CreD: Inner membrane 25.9 4.6E+02 0.0099 28.1 9.7 97 90-186 289-401 (430)
99 PF09679 TraQ: Type-F conjugat 25.7 20 0.00044 28.7 -0.3 21 7-27 19-39 (93)
100 PRK11715 inner membrane protei 25.2 4.4E+02 0.0096 28.2 9.4 95 92-186 297-407 (436)
101 PF04156 IncA: IncA protein; 24.0 1.1E+02 0.0024 28.4 4.3 15 40-54 21-35 (191)
102 PRK13387 1,4-dihydroxy-2-napht 21.7 4.3E+02 0.0094 26.9 8.4 61 23-89 11-71 (317)
103 TIGR02741 TraQ type-F conjugat 21.7 26 0.00057 27.1 -0.3 39 7-51 19-57 (80)
104 cd02431 Ferritin_CCC1_C CCC1-r 21.6 5.9E+02 0.013 22.8 9.2 51 65-125 37-88 (149)
105 PRK06080 1,4-dihydroxy-2-napht 21.4 4.8E+02 0.01 26.0 8.6 15 70-84 51-65 (293)
106 PRK05951 ubiA prenyltransferas 21.3 3.7E+02 0.0081 26.9 7.8 61 22-88 11-71 (296)
107 PF14402 7TM_transglut: 7 tran 21.2 4.3E+02 0.0094 26.8 7.8 68 28-107 194-262 (313)
108 PF12805 FUSC-like: FUSC-like 20.7 3E+02 0.0065 27.4 6.9 42 455-500 18-59 (284)
109 PRK13727 conjugal transfer pil 20.7 28 0.00061 27.0 -0.4 39 7-51 19-57 (80)
110 PF03209 PUCC: PUCC protein; 20.4 1E+03 0.022 25.2 11.9 52 20-71 47-105 (403)
111 PF11026 DUF2721: Protein of u 20.3 5.8E+02 0.013 22.2 10.3 90 57-147 1-116 (130)
112 TIGR00751 menA 1,4-dihydroxy-2 20.2 8.6E+02 0.019 24.3 10.0 56 29-91 7-62 (284)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=1.6e-81 Score=724.81 Aligned_cols=492 Identities=57% Similarity=0.973 Sum_probs=443.1
Q ss_pred CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (524)
Q Consensus 1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~ 80 (524)
|++|+++++|++.+..++++|||++||++|++++++|+++++|+++|+|++++++++.++|||++|||+||+|+++++|+
T Consensus 582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~ 661 (1204)
T TIGR00917 582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ 661 (1204)
T ss_pred HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 68899999999876667899999999999999999999999999999999999867899999999999999999999998
Q ss_pred hccC--C---------CCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 81 RQPM--E---------LVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA 149 (524)
Q Consensus 81 ~~~~--~---------~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa 149 (524)
+..+ + .+.++|++++++++|+||++|++|+++||+++.++++|++|.||+++++|++++|++++|+|||
T Consensus 662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a 741 (1204)
T TIGR00917 662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA 741 (1204)
T ss_pred HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7432 1 2789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--------------------------------------------HhhhcccccCcchhhhHHHHHHHHHHHHHhhhcc
Q 009832 150 LI--------------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185 (524)
Q Consensus 150 ~l--------------------------------------------~~~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i 185 (524)
+| +.|+|++.++++|++|+++|++++++|+||+.++
T Consensus 742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i 821 (1204)
T TIGR00917 742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821 (1204)
T ss_pred HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence 99 1367889999999999999999999999999999
Q ss_pred cccccccccCCCCchhhhHHHHHhhhcCCCCcEEEEEe-cCCCCchhhhhhhhhcccccCcccHHHHHHHhccCCCCccc
Q 009832 186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI 264 (524)
Q Consensus 186 ~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~~v~iv~~-~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 264 (524)
+.|+|+++++|+|||+.++++.++++|..|+|+++|++ +.||++++ .|+++|....|+.+++.++. ++.+++
T Consensus 822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~------~~~~~i 894 (1204)
T TIGR00917 822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVF------NNLTYI 894 (1204)
T ss_pred CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhh------cccchh
Confidence 99999999999999999999999999999999999999 68999874 67789988899999988743 445677
Q ss_pred cCCCCchHHHHHhhcCcCcccccc-cccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhh
Q 009832 265 AKPAASWLDDFLVWTSPEAFGCCR-KFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK 343 (524)
Q Consensus 265 ~~~~~~Wl~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~ 343 (524)
.+++.+|++||.+|+++.. +||+ +..++.+|++.+ ++|.+|++........|++++|+++
T Consensus 895 ~~~~~sWlddf~~wl~~~~-~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~ 955 (1204)
T TIGR00917 895 AKPASSWLDDYFDWASPQS-SCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEY 955 (1204)
T ss_pred cCCchHHHHHHHHHhCccc-cceeecCCCCCcCCCcc------------------ccccccccccccccCCCCHHHHHHH
Confidence 7889999999999998753 5664 345666665221 3455555422222347888999999
Q ss_pred hHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhhhccCCcccccch
Q 009832 344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV 423 (524)
Q Consensus 344 l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~ 423 (524)
|++|++..|+.+|++||+..|++++++++++.+.|.+|||+++|+++++++|++++++++|+++++++++.++++|||+.
T Consensus 956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~ 1035 (1204)
T TIGR00917 956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSV 1035 (1204)
T ss_pred HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcC
Confidence 99999988889999999999999998876545679999999999999999999999999999999987656899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhh
Q 009832 424 FYIFFEQYLDIWRVALINIAVALGAIFIVCLLMT-SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGI 502 (524)
Q Consensus 424 ~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli-~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~ 502 (524)
.|+|+|||+.+++.+++++++++++|++++++++ .++++++++++++.++.++++|+|.+||++||++|+++++||||+
T Consensus 1036 ~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi 1115 (1204)
T TIGR00917 1036 FYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI 1115 (1204)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998 699999999999999999999999999999999999999999999
Q ss_pred eechhHHHHHHHHhcc
Q 009832 503 AVEFCVHIVHAFLVSN 518 (524)
Q Consensus 503 sVDfsaHi~~~f~~s~ 518 (524)
||||++|+.|+|..++
T Consensus 1116 sV~f~~hI~~~f~~~~ 1131 (1204)
T TIGR00917 1116 SIEFCSHINAQFSTSK 1131 (1204)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999874
No 2
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=4.7e-76 Score=650.43 Aligned_cols=433 Identities=29% Similarity=0.508 Sum_probs=382.6
Q ss_pred cceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHH
Q 009832 15 FSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISN 94 (524)
Q Consensus 15 ~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~ 94 (524)
...+|++||||||++|++++++|+++++|++.|+|.++++ +..++|||++|||+||+|+++++|+|++++.+.+||+++
T Consensus 274 ~~~~~v~SKp~lai~g~l~p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~ 352 (868)
T KOG1934|consen 274 FMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAE 352 (868)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHH
Confidence 3557999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 009832 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------- 151 (524)
Q Consensus 95 ~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l----------------------- 151 (524)
+++|+|+||++||+|++++|++|.++|.|++|.||++++++++++|+||+|||.|+|
T Consensus 353 ~laeag~SItITSlTn~lsFgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~ 432 (868)
T KOG1934|consen 353 TLAEAGPSITITSLTNVLSFGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLE 432 (868)
T ss_pred HHHHhcCeeeHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------HhhhcccccCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHH
Q 009832 152 --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYF 205 (524)
Q Consensus 152 --------------------------~~~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~ 205 (524)
+.|+|++.++++|..+++++++|+.+|+||+.+++.|+|+.+++|+|||+.+.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~ 512 (868)
T KOG1934|consen 433 KTEEQKSSSSSSSSSLHNPILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSL 512 (868)
T ss_pred ccccccccCcccccccccchHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHH
Confidence 136788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc-CCCCcEEEEEec-CCCCchhhhhhhhhcccccCcccHHHHHHHhccCCCCccccCCCCchHHHHHhhcCcCc
Q 009832 206 DNTTEYL-RVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEA 283 (524)
Q Consensus 206 ~~~~~~f-~~~~~v~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~~~~~ 283 (524)
+..++++ +.+.++.+++++ +|+++|+++.+ +.+.+++.|+.++ ..+.+.+.+|+++|.+|....
T Consensus 513 ~~~~~~~~~~~~~v~v~V~np~dl~~~~~~~~------------~~~~~~~fE~~~~-~~G~~sT~~wlr~y~~~~~~~- 578 (868)
T KOG1934|consen 513 RLQEKYFWEYGQQVAVFVNNPPDLSNPENRDN------------LNELVSEFESTPY-SMGRESTKFWLREYLNFLFEK- 578 (868)
T ss_pred HHHHHHhhccCceEEEEEcCCccCCCHHHHHH------------HHHHHHHHhcCCc-ccCcccchhHHHHHHHHHhhh-
Confidence 9999998 557889998885 89999865443 3444455444442 344566789999999984431
Q ss_pred ccccccccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhH-HHhhhCCCCcccCCCCC
Q 009832 284 FGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLP-WFLNALPSADCAKGGHG 362 (524)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~-~fl~~~p~~~c~~~~~~ 362 (524)
+..+ ..++++|+..+. +|+.. | ..+
T Consensus 579 --------~~~~--------------------------------------~~~~~~~~~~~~~~fl~~-~-------~~~ 604 (868)
T KOG1934|consen 579 --------NAEL--------------------------------------EDNDDEFYDHLYESFLKS-P-------EFS 604 (868)
T ss_pred --------cccc--------------------------------------cCCCcchhhhhHHHHhcc-c-------ccc
Confidence 1111 001344555554 45442 2 245
Q ss_pred ccccceeccC--CCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhhhccCCcccccchhhhhHHHHHHHHHHHHH
Q 009832 363 AYSTSVDLNG--YESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALI 440 (524)
Q Consensus 363 ~y~~~~~~~~--~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~ 440 (524)
.+.+|+.++. ++...|.++|+.+..+++.+++|..++++++|++++++++ +++++|++.+.|.|||+.+.+++++
T Consensus 605 ~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~---fnvtvf~~~~~f~Dq~~~v~~~ti~ 681 (868)
T KOG1934|consen 605 FWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSD---FNVTVFDPSFVFLDQYLSVVPVTIQ 681 (868)
T ss_pred cCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccC---CCeEEecCchHHHHHHHHhccHHHH
Confidence 6778888862 4567899999999999999999999999999999998753 7788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhccc
Q 009832 441 NIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNI 519 (524)
Q Consensus 441 ~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~~ 519 (524)
++++|++||+++|++++++|.++++++++++|+.+|++|+|++||++||||||++++|||||||||+||++|||+.++.
T Consensus 682 ~~~~a~i~M~~v~~lfIp~~~~~~~it~si~SI~~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~AHi~yhy~~~~~ 760 (868)
T KOG1934|consen 682 SIVIALICMFLVCFLFIPNPLCVFWITLSIVSINIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHVAYHYYQSRK 760 (868)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHhheeehHhhhhHHhcCCccHHHHHHHHHhCCceeeehhheeeeeEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998876
No 3
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=8.4e-75 Score=657.26 Aligned_cols=449 Identities=39% Similarity=0.659 Sum_probs=392.5
Q ss_pred CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (524)
Q Consensus 1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~ 80 (524)
|++|+.+++++.+....+|+|||+++|++|++++++|+++++|++.++|+++++ ++.++|||++|||+||+|+++++|+
T Consensus 226 ~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIGvDd~Fi~~~~~~ 304 (798)
T PF02460_consen 226 MFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIGVDDMFIMIHAWR 304 (798)
T ss_pred HHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHHHhceEEeHHHHh
Confidence 467788888877766778999999999999999999999999999999999998 6889999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 009832 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI--------- 151 (524)
Q Consensus 81 ~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l--------- 151 (524)
++++..+.+||++++++++|+||++||+|++++|++|+++++|++|.||++++++++++|++++|+|||+|
T Consensus 305 ~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~a~l~l~~~re~~ 384 (798)
T PF02460_consen 305 RTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFPAILVLDGRREAA 384 (798)
T ss_pred hhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------HhhhcccccCcchhhhHHHHHHHHHHHHHhhhccccccc
Q 009832 152 -----------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (524)
Q Consensus 152 -----------------------------------------~~~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~ 190 (524)
++|+|++.++++|+++++++++++++|+||+.++|.|+|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld 464 (798)
T PF02460_consen 385 GRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLD 464 (798)
T ss_pred cccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 125678899999999999999999999999999999999
Q ss_pred ccccCCCCchhhhHHHHHhhhc-CCCCcEEEEEec-CCCCchhhhhhhhhcccccCcccHHHHHHHhccCCCCccccCCC
Q 009832 191 QQIVLPRDSYLQGYFDNTTEYL-RVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPA 268 (524)
Q Consensus 191 ~~~~~p~~s~~~~~~~~~~~~f-~~~~~v~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 268 (524)
+++++|+|||++++++.+++|| +.|+|+++++++ .|++++++ |+++ +++.+++++ .+. ....+++
T Consensus 465 ~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~-~~~l--------~~lv~~fe~---~~~-~~~~~~t 531 (798)
T PF02460_consen 465 PEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPEN-QDRL--------NSLVQEFEN---SPY-SIGNNST 531 (798)
T ss_pred hhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchHH-HHHH--------HHHHHHHhc---ccc-ccccccc
Confidence 9999999999999999998887 678899999885 79998753 4442 234444443 221 1233457
Q ss_pred CchHHHHHhhcCcCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHh
Q 009832 269 ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFL 348 (524)
Q Consensus 269 ~~Wl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~fl 348 (524)
.+|+++|.+|+++. +.+... + .+++.|++.+++|+
T Consensus 532 ~~WL~~y~~~l~~~---------~~~~~~--~----------------------------------~~~~~~~~~l~~FL 566 (798)
T PF02460_consen 532 SFWLRDYLNFLNSI---------NSSFQD--D----------------------------------NDKEFFYNLLPEFL 566 (798)
T ss_pred hhhHHHHHHHHhhc---------cccccc--c----------------------------------ccceeeeccchhhh
Confidence 89999999998641 111000 0 00134667788888
Q ss_pred hhCCCCcccCCCCCccccceecc--CCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhhhccCCcccccchhhh
Q 009832 349 NALPSADCAKGGHGAYSTSVDLN--GYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYI 426 (524)
Q Consensus 349 ~~~p~~~c~~~~~~~y~~~~~~~--~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~ 426 (524)
+. |. .+.|..|+.++ +++.+.|.++|+.+.+++..++++..++++++|++++++++ .++++|++.|.
T Consensus 567 ~~-~~-------~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~---~~~~~~~~~~~ 635 (798)
T PF02460_consen 567 NS-PE-------YRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSD---FNVFVFSPFFI 635 (798)
T ss_pred cc-cc-------ccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhccee---cceEeeccchh
Confidence 64 32 23577777775 34678899999999999999999999999999999998764 67889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheech
Q 009832 427 FFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEF 506 (524)
Q Consensus 427 f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDf 506 (524)
|+|||..+++++++++++|+++|+++++++++++++++++++++++++++++|+|++||++||++||++++||||+||||
T Consensus 636 ~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~v~l~~~iG~sVd~ 715 (798)
T PF02460_consen 636 FYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSMVNLIMSIGFSVDF 715 (798)
T ss_pred hHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHhchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccc
Q 009832 507 CVHIVHAFLVSNI 519 (524)
Q Consensus 507 saHi~~~f~~s~~ 519 (524)
++|++|+|+++++
T Consensus 716 ~~Hi~~~f~~~~~ 728 (798)
T PF02460_consen 716 SAHIAYAFVHSQG 728 (798)
T ss_pred HHHHHHHheeccc
Confidence 9999999999876
No 4
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=2.4e-74 Score=652.54 Aligned_cols=490 Identities=28% Similarity=0.471 Sum_probs=396.9
Q ss_pred CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (524)
Q Consensus 1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~ 80 (524)
|++|++++++++ ++++||++||++|++++++|+++++|++.++|+++|.+++.++|||++||||||+|+++++|+
T Consensus 409 m~~Ya~~~l~~~-----d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~ 483 (1145)
T TIGR00918 409 MLAYACLTMLRW-----DCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 483 (1145)
T ss_pred HHHHHHHHhccc-----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHh
Confidence 678999999996 589999999999999999999999999999999999966799999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 009832 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-------- 152 (524)
Q Consensus 81 ~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~-------- 152 (524)
+..++.+.++|++++++++|+||++|++|++++|++|+++++|++|.||++++++++++|++++|+|||+|.
T Consensus 484 ~t~~~~~v~~r~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~ 563 (1145)
T TIGR00918 484 ETGQNIPFEERTGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRRED 563 (1145)
T ss_pred hcCccCCHHHHHHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 998888999999999999999999999999999999999999999999999999999999999999999991
Q ss_pred ----------h---------------------------------------------------------------------
Q 009832 153 ----------V--------------------------------------------------------------------- 153 (524)
Q Consensus 153 ----------~--------------------------------------------------------------------- 153 (524)
.
T Consensus 564 ~R~D~~cC~~~p~~~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1145)
T TIGR00918 564 RRLDIFCCFFSPCSARVIQIEPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDI 643 (1145)
T ss_pred CCcceeeeecccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred -----------------------------------hhcccccCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCC
Q 009832 154 -----------------------------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198 (524)
Q Consensus 154 -----------------------------------~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~ 198 (524)
|+|++.++++|++|+++|++++++|+||+.+++.|+|+++++|+|
T Consensus 644 ~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~D 723 (1145)
T TIGR00918 644 AGSTRDLLSQFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRD 723 (1145)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCC
Confidence 234566778899999999999999999999999999999999999
Q ss_pred chhhhHHHHHhhhcCCCCcEEEEEec-CCCCchhhhhhhhhcccccCcccHHHHHHHhccCCCCccccCC-----CCchH
Q 009832 199 SYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKP-----AASWL 272 (524)
Q Consensus 199 s~~~~~~~~~~~~f~~~~~v~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-----~~~Wl 272 (524)
||+.++++.+++||+. +|+++|+++ .||.+. |++ + .++.+ ++++.+++.++ ..+|+
T Consensus 724 Syl~~yf~~~~~yF~~-~~vy~V~~~~~dy~~~---q~~-----------l-~~l~~--~f~~~~~i~~~~~~~~~~~WL 785 (1145)
T TIGR00918 724 TNEHDFLDAQFRYFSF-YNMYAVTQGNFDYPTQ---QQL-----------L-YDLHQ--SFSSVKYVLKEDNGQLPRMWL 785 (1145)
T ss_pred CcHHHHHHHHHHhcCc-CceEEEeCCCCCchHH---HHH-----------H-HHHHH--HhccCceeecCCCCCccchHH
Confidence 9999999999999988 589999984 888543 223 2 22222 25556676544 46999
Q ss_pred HHHHhhcCcC--c-ccccc--cccCCcccCCCCCCCCCCC--CCCCCCCCCcccCCCcccccCC-CCCCCCChhHHHhhh
Q 009832 273 DDFLVWTSPE--A-FGCCR--KFVNGTYCPPDDQPPCCSP--DEEPCGVNGVCKDCTTCFRHSD-LVNNRPSTEQFREKL 344 (524)
Q Consensus 273 ~~f~~~~~~~--~-~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~f~~~l 344 (524)
+||++|+++. . .+||+ +...+.|++++++...+.. .......+++++++.+ .++. ..++.|++++|+++|
T Consensus 786 ddf~~wL~~lq~~~d~~~~~g~~~~~~~~n~s~~~~~~~~l~~qtg~~~~p~~~~~~~--~~r~v~~~g~~~~~~F~~yL 863 (1145)
T TIGR00918 786 HYFRDWLQGLQKAFDEDWRDGRITKENYRNGSDDAVLAYKLLVQTGHRDKPVDKEQLT--TQRLVNADGIINPNAFYIYL 863 (1145)
T ss_pred HHHHHHHHHhhhhhhhhhhhcccccccccCCccccchhhhhcccccccCCcccccccc--ccccccccCCCCHHHHHHHH
Confidence 9999999862 2 24444 1233455554432111000 0000001223333311 1111 234578999999999
Q ss_pred HHHhhhCCCC-------cccCCCCCccccc-eeccCC-----CCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhh
Q 009832 345 PWFLNALPSA-------DCAKGGHGAYSTS-VDLNGY-----ESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMS 411 (524)
Q Consensus 345 ~~fl~~~p~~-------~c~~~~~~~y~~~-~~~~~~-----~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~ 411 (524)
+.|++..|.. .|... ..|..+ .+.++. .+..+..+||+++|+++++++|++++++++|+++++++
T Consensus 864 ~~wl~~~~~~y~~sq~~~~p~~--~~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~ 941 (1145)
T TIGR00918 864 SAWVSNDPVAYAASQANIYPHP--PEWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYE 941 (1145)
T ss_pred HHHHcCCcchhhcccccccCCc--chhcccccccccccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999753321 01000 111111 111110 12234445899999999999999999999999999987
Q ss_pred hccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q 009832 412 DTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAV 491 (524)
Q Consensus 412 ~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~i 491 (524)
..|+++||||..|+|+|||..+++.+++++++++++||+++++++++++++++++++++++.++++|+|++|||+||++
T Consensus 942 -~~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~v~v~G~M~lwgI~LnaV 1020 (1145)
T TIGR00918 942 -GFGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAI 1020 (1145)
T ss_pred -hcCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCccHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhheechhHHHHHHHHhcc
Q 009832 492 SVVNLIMSIGIAVEFCVHIVHAFLVSN 518 (524)
Q Consensus 492 S~i~l~msIG~sVDfsaHi~~~f~~s~ 518 (524)
|+++++||||+||||++||+|+|+++.
T Consensus 1021 S~vnLimsIGisVefsaHI~~~F~~~~ 1047 (1145)
T TIGR00918 1021 PVVILIASVGIGVEFTVHIALGFLTAI 1047 (1145)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 999999999999999999999999754
No 5
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-65 Score=568.82 Aligned_cols=501 Identities=52% Similarity=0.895 Sum_probs=463.0
Q ss_pred CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (524)
Q Consensus 1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~ 80 (524)
|++|+..+||+.+++++..+.||..+++.|+..+..++..++|+.+++|++-+.+...++||+++++|+|+.+++.++|+
T Consensus 559 mf~yi~~~Lg~~~~~r~vlidSkv~lgi~Gv~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~q 638 (1201)
T KOG1933|consen 559 MFLYINLALGHYRSCRRVLIDSKVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQ 638 (1201)
T ss_pred HHHHHHHHhccCcccceeeeeceeeccccceEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeec
Confidence 68999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hccCC--CCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 009832 81 RQPME--LVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------- 151 (524)
Q Consensus 81 ~~~~~--~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l------- 151 (524)
|..+. .+.++++..++.++||+|+.+++....+|+.+.++++|++|.|+++++++++++++.++|.+.+++
T Consensus 639 r~~~~~~~~~~~~I~~~l~~~~Psil~~slse~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~ 718 (1201)
T KOG1933|consen 639 RDGRSKSEPLEQRIGSVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRR 718 (1201)
T ss_pred ccccccCCCcccccchhhhccCcHHHHhHHHhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhh
Confidence 76543 789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------HhhhcccccCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCCch
Q 009832 152 -------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSY 200 (524)
Q Consensus 152 -------------------------------~~~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~ 200 (524)
..|+|+++++.+|++++.+|.+++.+++++..+++.|+|++.-+|+||+
T Consensus 719 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Sy 798 (1201)
T KOG1933|consen 719 LDNRIDIFCCVKPSEEESVRGNEGLLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSY 798 (1201)
T ss_pred hcCCcceEecccccccccccccchhHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccch
Confidence 1368999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcCCCCcEEEEEec-CCCCchhhhhhhhhcccccCcccHHHHHHHhccCCCCccccCCCCchHHHHHhhc
Q 009832 201 LQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWT 279 (524)
Q Consensus 201 ~~~~~~~~~~~f~~~~~v~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~ 279 (524)
+.++++...++++.|+|+|+|+++ .++++|. .|+++|+...|..+++.+.|..+...+|.++++++..+|++||.+|+
T Consensus 799 l~dyF~~~~e~l~~GPPvyfv~k~~~~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~ 877 (1201)
T KOG1933|consen 799 LSDYFKNLNEFLNVGPPVYFVLKGGLDLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWL 877 (1201)
T ss_pred hhhHhhhhhhhcccCCCEEEEecCCCCCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheee
Confidence 999999999999999999999996 8888874 67999999999999999999988778888899999999999999999
Q ss_pred CcCcccccc-cccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHhhhCCCCcccC
Q 009832 280 SPEAFGCCR-KFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAK 358 (524)
Q Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~fl~~~p~~~c~~ 358 (524)
.++.. ||| +..++.+||++.+. ..|..|..+++....+|+.++|++.|++|++..|+.+|.+
T Consensus 878 ~~~~~-cCr~~~~~g~fc~~~~~~----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~ 940 (1201)
T KOG1933|consen 878 SPQSS-CCRLKPDPGQFCPPSLND----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAK 940 (1201)
T ss_pred cccCC-ccccCCCCCCcCCCCccc----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCC
Confidence 98765 998 77888999886542 3444555565555557999999999999999999999999
Q ss_pred CCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhhhcc-CCcccccchhhhhHHHHHHHHHH
Q 009832 359 GGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTL-KINIFPYSVFYIFFEQYLDIWRV 437 (524)
Q Consensus 359 ~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~-~~~~~~~~~~f~f~eq~~~i~~~ 437 (524)
||+..|++++++..+..+.|+++.|+++|+++.++.|+++++|+.|+++.++.+.. +.++|||++.|+|+|||+.+++.
T Consensus 941 gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~ 1020 (1201)
T KOG1933|consen 941 GGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTD 1020 (1201)
T ss_pred CCceeeecceEEEecCcccchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhh
Confidence 99999999999876555679999999999999999999999999999998877432 57899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHh
Q 009832 438 ALINIAVALGAIFIVCLLMT-SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV 516 (524)
Q Consensus 438 ~~~~l~ia~~~vfvv~llli-~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~ 516 (524)
++.+++++++.+|+++.+++ .+.+.+++..+++.++.+.+.|+|++|||++|++|++|++|++|++|||+.|+.|+|.+
T Consensus 1021 ~~~~l~i~i~~iF~v~~~~l~~~~~ss~i~~~~~~~~~v~l~g~m~~~~I~~NavS~vNlvm~vgi~vef~~hi~~sf~~ 1100 (1201)
T KOG1933|consen 1021 TLTNLGIDIVAIFLVTSVLLGLDVDSSLIMVLVDEMILVNLVGFMYLWGISLNAVSLVNLVMSVGIAVEFCVHITHSFAT 1100 (1201)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccceeeeeehhhhhhhHHHHHHhhceeehhhhhhhhhhhcchhhhHHHHhhcceee
Confidence 99999999999999998866 67899999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 009832 517 SNI 519 (524)
Q Consensus 517 s~~ 519 (524)
+.+
T Consensus 1101 s~~ 1103 (1201)
T KOG1933|consen 1101 SSG 1103 (1201)
T ss_pred ccC
Confidence 875
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-59 Score=487.64 Aligned_cols=489 Identities=26% Similarity=0.430 Sum_probs=392.8
Q ss_pred CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (524)
Q Consensus 1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~ 80 (524)
|..|..+.+.||+ ++++|+.-+|++|++.+.+|..+++|++.++|+.||..+++++|||.+|+||||+|.+.|+|+
T Consensus 422 m~~ya~~t~lr~~----~~~~sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~ 497 (1143)
T KOG1935|consen 422 MVAYACLTQLRWW----DAVQSQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYR 497 (1143)
T ss_pred HHHHHHHHHHHhh----hhhccccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHH
Confidence 5678888888865 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 009832 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI--------- 151 (524)
Q Consensus 81 ~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l--------- 151 (524)
+..+. ++++++.|+++|+||++||+.|+.+|+.+.+.|+|++|.||+.+|+-+.++|+..+++|||++
T Consensus 498 e~~~~---~~~~~~~lk~tG~Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~ 574 (1143)
T KOG1935|consen 498 EVVKL---HEEMGELLKETGMSVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKA 574 (1143)
T ss_pred HHhhh---HHHHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 87654 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------------HhhhcccccCcchhhhHHH
Q 009832 152 -------------------------------------------------------------EVHAPILGLWGVKMVVVSV 170 (524)
Q Consensus 152 -------------------------------------------------------------~~~~~~l~~~~~k~~v~~~ 170 (524)
.+|.|++.+++.|..|++.
T Consensus 575 ~r~Di~cc~~~~p~~~~~~~~p~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg 654 (1143)
T KOG1935|consen 575 GRRDIFCCFRGNPEMATSQSVPSNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVG 654 (1143)
T ss_pred cccceeEeccCCcccCcCCCCCcccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHH
Confidence 1368999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCCCcEEEEEec-CCCCchhhhhhhhhcccccCcccHH
Q 009832 171 FLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLL 249 (524)
Q Consensus 171 ~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~~v~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~ 249 (524)
|++++++|+||+++.+.|++..+.+|++++..++.++.++||+.+ |++.|+++ .||.+.+ + ++
T Consensus 655 ~~allg~slyg~t~~~~GLel~DvvP~~t~~~~FL~Aq~kyFsfY-~m~aVtqg~~dyp~qQ---~------------ll 718 (1143)
T KOG1935|consen 655 FLALLGASLYGMTRSTDGLELTDVVPEHTAEAAFLRAQDKYFSFY-PMFAVTQGPFDYPHQQ---Q------------LL 718 (1143)
T ss_pred HHHHHHhhhhheeeecccchhhhcCCCCCcHHHHHHHHhhhcccc-hhheeecCCCCcccHH---H------------HH
Confidence 999999999999999999999999999999999999999999986 79999996 7887543 2 23
Q ss_pred HHHHHhccCCCCccccC-----CCCchHHHHHhhcCcC--cccccccccCCcccC------CCCCCCCCCCCCCCCCCCC
Q 009832 250 NEISRASSIPELSYIAK-----PAASWLDDFLVWTSPE--AFGCCRKFVNGTYCP------PDDQPPCCSPDEEPCGVNG 316 (524)
Q Consensus 250 ~~i~~~~~~~~~~~~~~-----~~~~Wl~~f~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 316 (524)
+++.+ ++.+.+|+-+ ..+.|+.-|++|+..- +||.+ +..|.+.+ .+++.. ..+.-.|.-+.
T Consensus 719 ~dyh~--sf~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~~fded--~a~G~~~~~~~v~n~S~d~~--lA~kL~~qtG~ 792 (1143)
T KOG1935|consen 719 DDYHQ--SFGSSKYVIKNENEQLPKYWLHLFRDWLQSLQRAFDED--WAKGRFTLTSGVSNGSEDAR--LAYKLLCQTGS 792 (1143)
T ss_pred HHHHH--HhccCceeecCCCCCCchHHHHHHHHHHHHHHHHHHHH--HhcCccccccCCCCCChHHH--HHHHHHHhcCC
Confidence 33332 2333444432 2468999999999762 23221 11222211 111100 00000000111
Q ss_pred cccCCCcccccCCC-CCCCCChhHHHhhhHHHhhhCCC-----CcccCCCCCccccceeccC--CCCCeeEeeeEEEeec
Q 009832 317 VCKDCTTCFRHSDL-VNNRPSTEQFREKLPWFLNALPS-----ADCAKGGHGAYSTSVDLNG--YESGIIQASEFRTFHT 388 (524)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~p~~~~f~~~l~~fl~~~p~-----~~c~~~~~~~y~~~~~~~~--~~~~~I~~sr~~~~~~ 388 (524)
. .+|.....+..+ ..+..|++.||++|..|.+..|- +--.-..+..+..+.+..+ .....+..++|++++.
T Consensus 793 ~-~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~ 871 (1143)
T KOG1935|consen 793 L-DNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLN 871 (1143)
T ss_pred c-cchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHh
Confidence 1 123222222222 22466789999999877664211 1000011223333321111 1234566678999999
Q ss_pred ccCChhHHHHHHHHHHHHHHhhhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 009832 389 PLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (524)
Q Consensus 389 ~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l 468 (524)
++.++.+++++++++|..++++. +.|.+.||.|.+|+|||||..++.++++.+++-++++|++|.++..|+|++.++..
T Consensus 872 gL~dTa~Ivk~I~~iR~~c~~~~-s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~Liv~ 950 (1143)
T KOG1935|consen 872 GLTDTADIVKAIESIRASCEEYT-SLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAGLIVC 950 (1143)
T ss_pred hhhhHHHHHHHHHHHHHHHhhcc-cCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999999999998 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhcccc
Q 009832 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIR 520 (524)
Q Consensus 469 ~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~~~ 520 (524)
++.+..++++|+|++.||++|+++.|+++.+||++|+|++|+...|.++..+
T Consensus 951 sL~~mt~eL~G~Mgl~GIKlS~i~aViLi~sVGigveFtvhv~l~FlTs~G~ 1002 (1143)
T KOG1935|consen 951 SLAIMTVELFGFMGLLGIKLSAIPAVILIASVGIGVEFTVHVALGFLTALGT 1002 (1143)
T ss_pred HHHHHHHHHHHHHHhhceeeccchhHHHHHHhhhchhhhHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999988653
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=9.6e-43 Score=378.31 Aligned_cols=409 Identities=20% Similarity=0.290 Sum_probs=308.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccC-CCCHHHHHHHHHhhhh
Q 009832 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM-ELVLETRISNALVEVG 100 (524)
Q Consensus 22 s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~-~~~~~~~i~~~l~~~g 100 (524)
++++-++.+++++++|++|++|+++|+|.|++. +++.+|.+++|+|+||++|+.|+|.++++ +++.+|++.+|++++|
T Consensus 218 r~~~~~llpL~~~l~sv~~tlG~m~llG~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g 296 (727)
T COG1033 218 RSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTG 296 (727)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Confidence 345557999999999999999999999999998 88999999999999999999999988754 5889999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h----------------------h
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV---H----------------------A 155 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~---~----------------------~ 155 (524)
+|++++.+||++||+++.++++|++++||+.+++|+..+++.+++++|+++.. . +
T Consensus 297 ~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~~~~~~k~~~~~~~~~~l~~i~ 376 (727)
T COG1033 297 PAVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVLPALLILIPKGRKKREEKKDSKKGKLEKRLSKIA 376 (727)
T ss_pred cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhhhhhcccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997621 1 0
Q ss_pred cccccCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCCCcEEEEEecCCCCchhhhhh
Q 009832 156 PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTN 235 (524)
Q Consensus 156 ~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~~v~iv~~~~d~~~~~~~~~ 235 (524)
....++ ++.++++.+++.+++.||..+++.+.|.++++|+|+|..+.++.++++|++..+.+++++..|-.||+. .+
T Consensus 377 ~~~~~~--~~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~~-l~ 453 (727)
T COG1033 377 KIIARH--PVTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPEV-LR 453 (727)
T ss_pred HHhHhh--hHHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChHH-HH
Confidence 112223 345677777888889999999999999999999999999999999999998899999999766677742 22
Q ss_pred hhhcccccCcccHHHHHHHhccCCCCccccCCCCchHHHHHhhcCcCcccccccccCCcccCCCCCCCCCCCCCCCCCCC
Q 009832 236 QLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVN 315 (524)
Q Consensus 236 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (524)
. .+++.+.+++. ++...+ .+.+-+..+. .|+.
T Consensus 454 ~--------md~l~~~l~~~------~~~V~s-~~siv~~vk~------------~~~~--------------------- 485 (727)
T COG1033 454 W--------MDELEEELEKG------EEHVFS-ASSIVDLVKQ------------VNGG--------------------- 485 (727)
T ss_pred H--------HHHHHHHHHhc------ceeeec-cchHHHHHHH------------HhcC---------------------
Confidence 1 11222222221 110000 0111111110 1111
Q ss_pred CcccCCCcccccCCCCCCCCChhHHHhhhHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCChhH
Q 009832 316 GVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGD 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~ 395 (524)
..|++.+ ++.-++..|+.. ..+| +++ +...--++.. -..+.|
T Consensus 486 -----------------~~p~~~~----~~~i~~~~~~~~-----~~~~-----~s~---~~~~~~~~~~----~~~~~~ 527 (727)
T COG1033 486 -----------------IIPDKSK----IQIILEELPESI-----KKRY-----ISG---DQLNLLGYSL----GDTQGE 527 (727)
T ss_pred -----------------CCCcchh----HHHHHHhcchhH-----hhcc-----cCC---Cceeeeeccc----ccchhH
Confidence 1122211 111222222210 1111 111 1111111111 123445
Q ss_pred HHHHHHHHHHHHHhhhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 009832 396 YVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVI 475 (524)
Q Consensus 396 ~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v 475 (524)
..+..++..+..++...+.|++++.+|.+.++.|....+.+++..+..++.++|+.++++..|+|..++..++|+.+...
T Consensus 528 ~~~~~~~~~~~i~~~~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~~~i~~iipi~~~v~ 607 (727)
T COG1033 528 LEDVGREILRDIEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVG 607 (727)
T ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHH
Confidence 55555444333333333467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhcccc
Q 009832 476 DLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIR 520 (524)
Q Consensus 476 ~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~~~ 520 (524)
+.+|+|++.||++|+.|+....+.+|++|||++|++++|..++++
T Consensus 608 ~~~~~M~l~gI~~~~~ta~v~ai~lGiGvDYsIh~~ery~eer~~ 652 (727)
T COG1033 608 WNFGLMGLLGIPLTPATATLGAIILGIGVDYSIHITERYREERKK 652 (727)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHhhhccchhhhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987765
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=3.8e-37 Score=347.27 Aligned_cols=405 Identities=14% Similarity=0.150 Sum_probs=295.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhH
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPS 102 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~ 102 (524)
+..++.+++++.+++++++|+++++|.+++. .+.++|.+++|+|+||++|++++|+++ +++.+.+|++.++++++|+|
T Consensus 217 ~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~ 295 (719)
T TIGR00921 217 WWRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRA 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHH
Confidence 4467888999999999999999999999997 788899999999999999999999876 45788999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------------
Q 009832 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA--------------------------- 155 (524)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~--------------------------- 155 (524)
+++|++|+++||+++.++++|++|+||+++++|++++++.+++++|+++....
T Consensus 296 i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv~~~~l~~l~~lPall~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (719)
T TIGR00921 296 VLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVKKEIIAIGGKSSEIEEELSKV 375 (719)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999983110
Q ss_pred -cccccCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCC-CcEEEEEecCCCCchhhh
Q 009832 156 -PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG-PPLYFVVKDYNYSSESRH 233 (524)
Q Consensus 156 -~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~-~~v~iv~~~~d~~~~~~~ 233 (524)
.+..+| ++.++++.+++.+++.+|..+++.+.|..+++|+|++.++.++.++++|++. .+.++++++.+..+++.
T Consensus 376 ~~~~~r~--~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~~- 452 (719)
T TIGR00921 376 LSITVRH--PVPALVAALIITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPEL- 452 (719)
T ss_pred HHHHHhC--CcHhHHHHHHHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHHH-
Confidence 111122 2345566667778899999999999999999999999999999999999865 67888888666655532
Q ss_pred hhhhhcccccCcccHHHHHHHhccCCCCccccCCCCchHHHHHhhcCcCcccccccccCCcccCCCCCCCCCCCCCCCCC
Q 009832 234 TNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCG 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (524)
.++ .+.+.+.+++ .+....+.++ .-+.++.+..+ +.. +
T Consensus 453 l~~--------l~~l~~~l~~---~~~v~~v~~~--~si~~~~~~~~------------~~~-~---------------- 490 (719)
T TIGR00921 453 VRF--------MDELSRDIKA---TGVAARVFGA--PSIIDLVKEVE------------GLP-A---------------- 490 (719)
T ss_pred HHH--------HHHHHHHHhh---ccccCcccCC--CCHHHHHHHhc------------CCC-C----------------
Confidence 111 1112222222 1111111111 11222221111 100 0
Q ss_pred CCCcccCCCcccccCCCCCCCCChhHHHhhhHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCCh
Q 009832 314 VNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQ 393 (524)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~ 393 (524)
|+...+ +.+ |+. ..+.|. .+ +.. +..+...+. +.
T Consensus 491 ---------------------~~~~~~-~~l-------p~~-----~~~~~i-----~~---~~~---~v~~~~~~~-~~ 524 (719)
T TIGR00921 491 ---------------------PERSAL-EPI-------PED-----EEGGYI-----SG---GQI---KVAVIQVQL-KQ 524 (719)
T ss_pred ---------------------CCchHH-HhC-------CHH-----Hhccee-----cC---Cce---EEEEEecCC-cc
Confidence 000000 001 100 000110 00 000 222211221 22
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 009832 394 GDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMI 473 (524)
Q Consensus 394 ~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i 473 (524)
++..+..++..+..++.....|+++...|...++.|....+.++..+...++++.++++.++.++|++.+++.++++.+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~~~~l~~~i~~~~~ 604 (719)
T TIGR00921 525 GEPKVQGRKILRDVQHEHPPPGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSG 604 (719)
T ss_pred hhHHHHHHHHHHHHhccCCCCCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 23333444433222221112467888899999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhcccc
Q 009832 474 VIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIR 520 (524)
Q Consensus 474 ~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~~~ 520 (524)
.+..+|+|+++|+++|+.+++.+.+.+|+||||++|+.++|..+.+|
T Consensus 605 ~~~~~g~~~~~gi~l~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~ 651 (719)
T TIGR00921 605 ILWAIGLMGLRGIPSFLAMATTISIILGLGMDYSIHLAERYFEERKE 651 (719)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999877654
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=100.00 E-value=1.2e-29 Score=290.87 Aligned_cols=204 Identities=19% Similarity=0.240 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcc----chhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhh
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKS----TLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVG 100 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~----~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g 100 (524)
.++.+++++.+++++++|++.++|.+. +..+...++.+++|+|+||++|++++|+++ +++.++++++.++++++|
T Consensus 199 ~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g 278 (910)
T TIGR00833 199 TMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTG 278 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 567788888999999999999999863 332334456788999999999999999987 456789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------cccc
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------------PILG 159 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~---------------------~~l~ 159 (524)
++++.+++|+++||+.+.++++|.+|.||+.+++|++++++..+|++|+++.... .+..
T Consensus 279 ~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gvl~a~l~~ltllPall~l~g~~~~~~~~~~~~~~~~~~~l~~~v~ 358 (910)
T TIGR00833 279 KAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGREGLMKPGRKSKIRFIWRRLGTAVV 358 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccchHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999984321 1222
Q ss_pred cCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCC--CcEEEEEec-CCCCchh
Q 009832 160 LWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG--PPLYFVVKD-YNYSSES 231 (524)
Q Consensus 160 ~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~--~~v~iv~~~-~d~~~~~ 231 (524)
+| +..+++++++++++++++..+++.+.|..+++|+|++.++.++.++++|+.+ .|++++++. .+..+|+
T Consensus 359 r~--p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~ 431 (910)
T TIGR00833 359 RR--PWPILVTTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPA 431 (910)
T ss_pred hc--cHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHH
Confidence 33 3345566777788889999999999999999999999999999999999766 788898885 4666663
No 10
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.97 E-value=9.7e-28 Score=274.74 Aligned_cols=431 Identities=17% Similarity=0.223 Sum_probs=274.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~~i~ 104 (524)
..+..++++.+++++++|++.++|.++|. ++.+.+.+++|+|+||++|++++|+++. ++.+.++++.+++++.|+|++
T Consensus 295 ~~l~~l~~i~~s~~~~~~~~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~ 373 (862)
T TIGR03480 295 LVFAVLVTLIVGLILTAAFATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALL 373 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999997 7888899999999999999999998764 567789999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------cccccCcchhhh
Q 009832 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-----------------PILGLWGVKMVV 167 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~-----------------~~l~~~~~k~~v 167 (524)
++++||++||++...+++|++++||+.+++|++++++.+++++|+++.... .+..+| +..+
T Consensus 374 ~s~lTt~~gf~~l~~~~~~~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 451 (862)
T TIGR03480 374 LAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGYATLAPLDAFLRRH--RRPV 451 (862)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCccchhHHHHHHHHHhc--cHHH
Confidence 999999999999999999999999999999999999999999999984321 122222 3345
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCCC-cEEEEEecCCCCchhhhhhhhhcccccCcc
Q 009832 168 VSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGP-PLYFVVKDYNYSSESRHTNQLCSISQCDSN 246 (524)
Q Consensus 168 ~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~-~v~iv~~~~d~~~~~~~~~~~~~~~~~~~~ 246 (524)
++++++++++++++..+++.+.|+.+++|++++..+.++.+.+.+..+. +..++.++ +++.+
T Consensus 452 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~vl~~~-----~~~~~------------ 514 (862)
T TIGR03480 452 LGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAPS-----APEAR------------ 514 (862)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEEecCC-----HHHHH------------
Confidence 5667777888999999999999999999999999999888888775443 23333322 21111
Q ss_pred cHHHHHHHhccCCCCccccCCCCchHHHHH---------------hhcCcCcccccccccCC-cccCCCCCCCCCCCCCC
Q 009832 247 SLLNEISRASSIPELSYIAKPAASWLDDFL---------------VWTSPEAFGCCRKFVNG-TYCPPDDQPPCCSPDEE 310 (524)
Q Consensus 247 ~l~~~i~~~~~~~~~~~~~~~~~~Wl~~f~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 310 (524)
.+.+++++ .++.+.+ ..+.+|. +-+.+ ..+. ...+....+ .
T Consensus 515 ~~~~~l~~---~~~V~~v-----~sl~~~v~~~q~~kl~~i~~~~~~l~~--------~~~~~~~~~~~~~~-------~ 571 (862)
T TIGR03480 515 ALTERLEA---LPEVDQV-----VTLPDFVPDDQEAKLALIADLALVLGP--------TLNPGEADPAPSAE-------E 571 (862)
T ss_pred HHHHHHhC---CCCcceE-----eehhhcCCCCHHHHHHHHHHHHHHhCc--------ccCCccCCCCCChH-------H
Confidence 12223332 2222211 1122221 11110 0000 000000000 0
Q ss_pred CCCCCCcccCCCcccccCCCCCCCCCh---hHHHhhhHHHhhh------------------CCCCc-----ccCCCC---
Q 009832 311 PCGVNGVCKDCTTCFRHSDLVNNRPST---EQFREKLPWFLNA------------------LPSAD-----CAKGGH--- 361 (524)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~f~~~l~~fl~~------------------~p~~~-----c~~~~~--- 361 (524)
... .. +...+.+.........++. ....+.++.+++. .|... -.+..+
T Consensus 572 ~~~--~l-~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 648 (862)
T TIGR03480 572 VAA--AL-RRLAARLRAAAAKSQDPDAAAAGRLAASLDRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVTL 648 (862)
T ss_pred HHH--HH-HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHccCCCCCh
Confidence 000 00 0000000000000000110 0011111111110 00000 000000
Q ss_pred ----CccccceeccCCCCCeeEeeeEEEeec-ccCChhHHHHHHHHHHHHHHhhhhccCCcccccchhhhhHHHHHHHHH
Q 009832 362 ----GAYSTSVDLNGYESGIIQASEFRTFHT-PLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWR 436 (524)
Q Consensus 362 ----~~y~~~~~~~~~~~~~I~~sr~~~~~~-~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~ 436 (524)
...+++ +.+ +++. .|..+..+ +.++.+ ++++..++..+ .....+|.+..+.+....+..
T Consensus 649 ~~lp~~~~~~--~~~-~~~~---~~l~v~~~~~~~~~~-------~l~~~~~~v~~---~~~~~tG~~~~~~~~~~~i~~ 712 (862)
T TIGR03480 649 EDLPPDLRRR--WVA-KDGR---ARLEVFPKEDLNDNE-------ALRRFVRAVRK---VAPDATGAPVSILESGDTVVG 712 (862)
T ss_pred hhCCHHHHHh--HcC-CCCC---EEEEEecCCCcchHH-------HHHHHHHHHHh---hCCCccChHHHHHHHHHHHHH
Confidence 000000 100 1111 23333222 111221 22222222221 111245777777887788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHh
Q 009832 437 VALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV 516 (524)
Q Consensus 437 ~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~ 516 (524)
...+.+.++++++++++++.++++..++++.+|++...+..+|+|+++|+++|..+++.+.+.+|++|||++|+.++|..
T Consensus 713 ~~~~~~~~a~~~i~lll~~~frs~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~ 792 (862)
T TIGR03480 713 AFLQAFIYALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRN 792 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 009832 517 SN 518 (524)
Q Consensus 517 s~ 518 (524)
..
T Consensus 793 ~~ 794 (862)
T TIGR03480 793 GV 794 (862)
T ss_pred hc
Confidence 65
No 11
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.94 E-value=6e-26 Score=205.97 Aligned_cols=135 Identities=51% Similarity=0.824 Sum_probs=130.2
Q ss_pred eeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhh
Q 009832 19 YVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVE 98 (524)
Q Consensus 19 ~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~ 98 (524)
+||||.||++.+++++++|+++++|++.++|.+++++...++||+++++|+||++++.++|++.+++.+.++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999866669999999999999999999999998888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 99 ~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
+|++++.|++|++++|+++..+++|++|+||+++++++++++++++|+|||+|..
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsl 135 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSL 135 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999943
No 12
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.92 E-value=3.7e-25 Score=239.71 Aligned_cols=144 Identities=24% Similarity=0.409 Sum_probs=137.1
Q ss_pred CeeehhhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHh
Q 009832 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (524)
Q Consensus 1 ~~~~v~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~ 80 (524)
||+|+.+.|++.. -++||++||++|++++++|++++.|++.++|.+++. +..++|||+|+||+||+|.| ..|+
T Consensus 72 mflYis~~l~~l~-----~v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~-I~eViPFLvLaIGVDnifiL-a~~~ 144 (886)
T TIGR00920 72 AVLYIYYQFCNLR-----QLGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTG-LNEALPFFLLLIDLSKASAL-AKFA 144 (886)
T ss_pred HHHHHHHHhCCcc-----ccCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHhHHHhhhchhhHHHH-Hhhh
Confidence 7899999999975 499999999999999999999999999999999998 59999999999999999999 5566
Q ss_pred -hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 81 -RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 81 -~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
+..++.+.++|++++|++.||+|++|++|..++|++|.++++|++|.||+|++++++++|++|+||||++|
T Consensus 145 ~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~L 216 (886)
T TIGR00920 145 LSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACL 216 (886)
T ss_pred hccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999
No 13
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.79 E-value=1.5e-17 Score=188.18 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=187.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcC-CCCcEEEEEecCCCCchhhhhhhhhcccc
Q 009832 164 KMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLR-VGPPLYFVVKDYNYSSESRHTNQLCSISQ 242 (524)
Q Consensus 164 k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~-~~~~v~iv~~~~d~~~~~~~~~~~~~~~~ 242 (524)
|..++++++++++++.||+.+++.+.|+.+++|+|++.+++++.++++|+ +..++.+++++.|..+|+. .++
T Consensus 4 ~~~v~~~~~~l~~~~~~g~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~fg~~~~~~~v~v~~~~~~~~~~-l~~------ 76 (719)
T TIGR00921 4 RTAIILVFLALLILSAYGAQHLNVESDTEKQLPKDFESYKWYHVLQREFGTSTKTLLVVIEGDDVTRKPV-LDY------ 76 (719)
T ss_pred chhhHHHHHHHHHHHHHhcccceeccChhhhCCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeCCCCCHHH-HHH------
Confidence 44567778888889999999999999999999999999999999999996 4566788888777777643 222
Q ss_pred cCcccHHHHHHHhccCCCCccccCCCCchHHHHHhhcCcCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCcccCCC
Q 009832 243 CDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCT 322 (524)
Q Consensus 243 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (524)
.+.+.++++ +.+++.+ ..++.++.+.. ++.+
T Consensus 77 --i~~l~~~l~------~~~~V~~--v~s~~~~~~~~------------~~~~--------------------------- 107 (719)
T TIGR00921 77 --MRRLEQRLR------EKPYVTN--VRSAADIMRQI------------PGNF--------------------------- 107 (719)
T ss_pred --HHHHHHHHh------cCCCcce--eecHHHHHHHh------------cCCC---------------------------
Confidence 112222222 2223221 22344432211 1110
Q ss_pred cccccCCCCCCCCC-hhHHHhhhHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHH
Q 009832 323 TCFRHSDLVNNRPS-TEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLR 401 (524)
Q Consensus 323 ~~~~~~~~~~~~p~-~~~f~~~l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~ 401 (524)
..|+ .++..+.+ +..|. +.+. ..+. ++ +..++.+..++-.+..+..+.++
T Consensus 108 ----------~~p~~~~~~~~~~----~~~~~----------~~~~-~~s~--d~--~~~~i~v~~~~~~~~~~~~~~~~ 158 (719)
T TIGR00921 108 ----------PLPVTMPEVRPLM----SEYPR----------SKEM-FLSK--DH--TVAIIIVQLKSDADYKQVVPIYN 158 (719)
T ss_pred ----------cCCCCHHHHHHHH----HhCcH----------HHHh-ccCC--CC--ceEEEEEEecCCCChHHHHHHHH
Confidence 0111 12222111 11121 1000 0110 11 23345555454334444556677
Q ss_pred HHHHHHHhhhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009832 402 AAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVM 481 (524)
Q Consensus 402 ~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M 481 (524)
++|+..++.....|+++...|.+....|....+.++......++++.+++++++++++++.+++..+++....+..+|+|
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~~~~~~~l~~~~~~~~~~~g~~ 238 (719)
T TIGR00921 159 DVERSLERTNPPSGKFLDVTGSPAINYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIM 238 (719)
T ss_pred HHHHHHhccCCCCCcEEEecCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776433346778888988888888888988888889999999999999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHhhhhheechhHHHHHHHHhcc
Q 009832 482 AILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSN 518 (524)
Q Consensus 482 ~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~ 518 (524)
+++|+++|.+|++...+.+|++|||++|+.++|....
T Consensus 239 ~~~g~~l~~~~~~~~~l~lgi~vd~~ihl~~r~~~~~ 275 (719)
T TIGR00921 239 GWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEER 275 (719)
T ss_pred HHhCCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998654
No 14
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=173.82 Aligned_cols=132 Identities=17% Similarity=0.297 Sum_probs=123.0
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhh
Q 009832 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVG 100 (524)
Q Consensus 21 ~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g 100 (524)
..++.-++++++.++.++.|++|+|+++|+|+++ .+..+--+++|+|+||++|+.++|++++++..++|++.++++++|
T Consensus 589 fRs~~~~i~~iipi~~~v~~~~~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G 667 (727)
T COG1033 589 FRSPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTG 667 (727)
T ss_pred HhchHHhHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhc
Confidence 3455568899999999999999999999999998 788888899999999999999999998765449999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
++++.+++|++.||+++.+|++|.+++||+.++++++++.+.+++++|+++..
T Consensus 668 ~ail~s~ltt~~GF~aLi~S~f~i~snfGll~~~~il~sl~asl~~lPall~~ 720 (727)
T COG1033 668 KAILASALTTAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLVLLPALLVL 720 (727)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999854
No 15
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.69 E-value=2.2e-14 Score=160.58 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++.++++..++++.++|++.++|.++|. ....-..+++|+++|+.+++.++++++ +++.+.++++.++.++.+.|++
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il 368 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTIL 368 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 67788888899999999999999999997 677777888999999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
.|++||+++|+.+.+...+++|.|++..++|++++++.++++.|+++.
T Consensus 369 ~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l~~ 416 (755)
T PRK13024 369 DSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLE 416 (755)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999999983
No 16
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.68 E-value=2.6e-16 Score=161.72 Aligned_cols=136 Identities=26% Similarity=0.438 Sum_probs=118.3
Q ss_pred eecchhhHHHHHHHHHHHHHHHHHH----HHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHH
Q 009832 20 VSSKVLLGLSGVILVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISN 94 (524)
Q Consensus 20 v~s~~~l~~~~~~~~~~a~~~~~Gl----~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~ 94 (524)
.|| +..++.+++++++++++++|+ ..+.|.+++..+..++..+++|+|+||.+|++++|+++. ++.+.++++++
T Consensus 164 fRs-~~~~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~ 242 (333)
T PF03176_consen 164 FRS-VRAALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRR 242 (333)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 344 556888999999999999999 345677887644445556889999999999999999874 46788899999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009832 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (524)
Q Consensus 95 ~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~ 156 (524)
+++++|.+++.+++|+++||+++.++++|++|+||+.+++|++++++.+++++|+++....+
T Consensus 243 a~~~~g~~i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~ 304 (333)
T PF03176_consen 243 AVRSTGRAILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGR 304 (333)
T ss_pred HHhccCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999854433
No 17
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.63 E-value=4.9e-13 Score=155.91 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++...+++.++++.+++++.++|.++|. ++.....+.+|+.+||++++.++.+++ +++.++.+++.++.++.+.|++
T Consensus 358 ~~li~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~ 436 (1025)
T PRK10614 358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVL 436 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35666778889999999999999999997 666677778899999999988776554 3567889999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------c----------
Q 009832 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------P---------- 156 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~i---p~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~---------------~---------- 156 (524)
.|++|++++|+-..+++- +.++.|++..+.|++++++.++|+.|++...+. +
T Consensus 437 ~stltti~~f~Pl~~~~g~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~ 516 (1025)
T PRK10614 437 SMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQKRLRGFGRMLVALQQGYG 516 (1025)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhhHHHHHHHHHHHHH
Confidence 999999999999887665 569999999999999999999999999873321 0
Q ss_pred ----ccccCcchhhhHHHHHHHHHHHHHhhhccccccccc---------ccCCCCchhhhHHHH
Q 009832 157 ----ILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGYFDN 207 (524)
Q Consensus 157 ----~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~---------~~~p~~s~~~~~~~~ 207 (524)
+..+ +|..+++++++++++++++..+++.++-|. -..|+++.+.+..+.
T Consensus 517 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~ 578 (1025)
T PRK10614 517 RSLKWVLN--HTRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGK 578 (1025)
T ss_pred HHHHHHHh--chHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHH
Confidence 1111 234455666667777877776666554431 123666665544333
No 18
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.56 E-value=9.6e-13 Score=153.59 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
++...+++.++++.+++++.++|.++|. ++.+-..+.+|+.+||++++++++++. .++.++.+++.++.++.++|++
T Consensus 365 ~li~~~~iP~s~~~~~~~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~ 443 (1044)
T TIGR00915 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5666677788999999999999999997 666666778889999999999888764 3467899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
.|++|++++|+-..+.+ -+.++.|++..+.+++++++.++++.|++.
T Consensus 444 ~ttltti~~flPl~~~~G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~ 493 (1044)
T TIGR00915 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 (1044)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877653 577899999999999999999999999876
No 19
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.55 E-value=7.2e-12 Score=145.84 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~~ 105 (524)
++..++++-++++.+++.+.++|.++|. ++..-..+.+|+.+||++++++++++. .++.++.+++.++.++.+.|++.
T Consensus 358 ~l~~~~~IP~s~~~~~~~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~ 436 (1017)
T PRK09579 358 VLIPVVTIPLSMIGVLFFMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVS 436 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4445677889999999999999999997 566666677889999999999888765 45678999999999999999999
Q ss_pred HHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 106 tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
|++||+++|+-..+.+ -+.++.|++..+.|++++++.++++.|++..
T Consensus 437 stlTti~~f~Pl~f~~g~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~ 486 (1017)
T PRK09579 437 MTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCA 486 (1017)
T ss_pred HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876643 2678999999999999999999999998873
No 20
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.54 E-value=7.8e-12 Score=146.48 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cC-----C-----CCHHHHHHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-----E-----LVLETRISNA 95 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~-----~-----~~~~~~i~~~ 95 (524)
++...+++-++++.++.++.++|+++|. ++. . .+++|+-+||+++++.+..+. .+ + .++.+++.++
T Consensus 368 ~liv~~~iP~s~~~~~~~m~~~g~sln~-~sl-~-~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g 444 (1051)
T TIGR00914 368 ALIAATVIPLSLLITFIGMVFQGISANL-MSL-G-ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAA 444 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHH-H-HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHH
Confidence 5566677788999999999999999997 443 3 456799999999988764332 11 2 4677889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------
Q 009832 96 LVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------ 154 (524)
Q Consensus 96 l~~~g~~i~~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~------------------ 154 (524)
.++.+.|++.|++||+++|+=..+.+ -..++.|++..+.+++..++.++++.|++...+
T Consensus 445 ~~~~~~pil~stlTti~~flPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~ 524 (1051)
T TIGR00914 445 SREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKR 524 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence 99999999999999999998876543 267899999999999999999999999987422
Q ss_pred --hccc---ccCcchhhhHHHHHHHHHHHHHhhhccccccc
Q 009832 155 --APIL---GLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (524)
Q Consensus 155 --~~~l---~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~ 190 (524)
.+++ .+| |+.+++++++++++++++..+++.++-
T Consensus 525 ~Y~~~l~~~l~~--~~~~i~~~~~ll~~~~~~~~~l~~~f~ 563 (1051)
T TIGR00914 525 RYEPLLERVLAW--PAVVLGAAAVSIVLVVWIASRVGGEFI 563 (1051)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCcCcC
Confidence 1111 122 445666677777778887777766553
No 21
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.53 E-value=3.3e-12 Score=148.98 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++...+++.++++.+++++.++|.++|. ++.....+.+|+.+||++++..++++. +++.++.+++.++.++.+.|++
T Consensus 367 ~~~i~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl 445 (1040)
T PRK10503 367 ATIIPGVAVPLSLIGTFAVMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTII 445 (1040)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46667788889999999999999999997 555666677888899999999887765 3456778999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~i---p~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
.+++||+++|+-..+++- +.++.|++..+.++++.++.+++++|.+..
T Consensus 446 ~~tltti~~f~Pl~~~~g~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~ 496 (1040)
T PRK10503 446 SLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCA 496 (1040)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887665 789999999999999999999999998763
No 22
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.51 E-value=2e-11 Score=136.79 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++...++..+.++.++|++.++|.++|. ....--.+.+|+++|+.+++.++.+|+ +++.+..+++.++.++++.+++
T Consensus 396 ~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il 474 (855)
T PRK14726 396 LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIV 474 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 67778888899999999999999999997 444444577889999999999999877 4567889999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
.+++||+++|+.+.+....++|.|++..++|++..++.++++.|.++.
T Consensus 475 ~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~ 522 (855)
T PRK14726 475 DANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVA 522 (855)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888899999999999999999999999999874
No 23
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.48 E-value=9.5e-12 Score=145.15 Aligned_cols=125 Identities=20% Similarity=0.235 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i~ 104 (524)
++..++++-++++.+++++.++|+++|. ++.....+.+|+.+||++++++++++.. ++.++.+++.++.++.++|++
T Consensus 364 ~liv~~~iP~s~~~~~~~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~ 442 (1032)
T PRK09577 364 TLIPTLVVPVALLGTFGVMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIV 442 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5667778889999999999999999997 6777778889999999999999887753 467899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
.+++|++++|+-..+.+ -+.++.|++..+++++++++.++++.|++..
T Consensus 443 ~~tlt~~~~flPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~ 493 (1032)
T PRK09577 443 GITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCA 493 (1032)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776544 4557999999999999999999999998763
No 24
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.46 E-value=2.6e-11 Score=141.57 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i~ 104 (524)
++..++++.++++.++|++.++|+++|. ++.+.+.+.+|+.+||++|+++++++.. ++.++.+++.++.++.+.|++
T Consensus 365 ~li~~~~iP~si~~t~~~~~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~ 443 (1037)
T PRK10555 365 TLIPTIAVPVVLMGTFSVLYAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALV 443 (1037)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5567778889999999999999999998 6778888889999999999999988763 467899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
.+++|++++|+=..+.+ -.-++.|++..+.+++++++.++++.|++..
T Consensus 444 ~stltti~~flPl~~~~G~~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~ 494 (1037)
T PRK10555 444 GIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCA 494 (1037)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877643 2456889999999999999999999998773
No 25
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.45 E-value=4.4e-13 Score=154.25 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHH
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i 103 (524)
+..++..++..++++++++|+++++|+++|. .+.++-.+++|||+||++|+.++|+++.++.. ..-+++|+++
T Consensus 736 ~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~-~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~------~~~~~~g~ai 808 (862)
T TIGR03480 736 VRDVLLVLAPLLLAGLLTVAAMVLLGIPFNF-ANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN------LLQSSTARAV 808 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHhhhhhhHHHHHHHHHHhccchh------HHHhhhHHHH
Confidence 3457888999999999999999999999997 56666668899999999999999988753211 1124679999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
++|++|+++||+++.+++.|++++||+.+++|++++++.+++++|+++
T Consensus 809 ~~saltt~~gf~~l~~s~~~~~~~~G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 809 FFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999986
No 26
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.44 E-value=2.5e-11 Score=141.82 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i~ 104 (524)
++...+++-++++.+++++.++|.++|. ++.+...+.+|+.+||+++++++++++. .+.++.+++.++.++.++|++
T Consensus 365 ~li~~~~iP~sl~~~~~~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~ 443 (1049)
T PRK15127 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5566777788999999999999999997 6667777889999999999999887753 467899999999999999999
Q ss_pred HHHHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s---~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
.+++|++++|+-..+. .-..++.|++..+.+++++++.++++.|++.
T Consensus 444 ~~tltt~~~f~Pl~~~~G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~ 493 (1049)
T PRK15127 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 (1049)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988773 3455789999999999999999999999876
No 27
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.43 E-value=1.3e-10 Score=128.94 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.|+...++..+.++.++|++.++|.++|. ....--.+.+|+++|+.+++.++++++ +++.+.++++.++.++++.+++
T Consensus 302 ~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il 380 (758)
T PRK13023 302 LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIV 380 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57778888899999999999999999997 566666788899999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
.|++||+++|+.+.+...+++|.|++...+|++.+++.++++.|+++.
T Consensus 381 ~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~~ 428 (758)
T PRK13023 381 DANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIA 428 (758)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888999999999999999999999999999884
No 28
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.39 E-value=8.4e-12 Score=143.74 Aligned_cols=209 Identities=16% Similarity=0.227 Sum_probs=167.9
Q ss_pred eecchhhHHHHHHHHHHHHHHHHHHHHhhcCcc----chhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHH
Q 009832 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKS----TLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISN 94 (524)
Q Consensus 20 v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~----~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~ 94 (524)
++..+..+++.++++.++...+.|+..++.... +.........+.+|+|+||++.++.+|+|+. ++.+++++++.
T Consensus 204 vf~s~i~a~lpL~t~~~s~~~a~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~ 283 (937)
T COG2409 204 VYRSVITAFLPLITVGLSLLVAQGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGT 283 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 444556788899999999999999988554433 3334555667889999999999999999774 45789999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------
Q 009832 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH-------------------- 154 (524)
Q Consensus 95 ~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~-------------------- 154 (524)
+++.+|..+..++.|-++++..+.+.++|.++.+++.+++++.++.+..+|++|+++...
T Consensus 284 a~~tag~~V~~sg~tV~~a~~~l~~a~~~~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~~~~~~~~~~w~~ 363 (937)
T COG2409 284 AYRTAGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPDPKRASESRFWRR 363 (937)
T ss_pred HHHhccceeehhhhHHHHHHHHHHhcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCCcchhhhcchhhh
Confidence 999999999999999999999999999999999999999999999999999999999422
Q ss_pred -hcccccCcchhhhHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCC--CcEEEEEec-CCCCch
Q 009832 155 -APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG--PPLYFVVKD-YNYSSE 230 (524)
Q Consensus 155 -~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~--~~v~iv~~~-~d~~~~ 230 (524)
+.++.+||.. +++..++.++....-...++.+.+..+.+|.+.+.++.++..+++|+.+ .|..++++. .+..+|
T Consensus 364 ~~~~v~~~P~~--~l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~ 441 (937)
T COG2409 364 VGTLVVRRPLA--ILVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTP 441 (937)
T ss_pred heeEEeeccHH--HHHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcCh
Confidence 2233444432 2334444455556667889999999999999999999999999999653 578888885 444433
No 29
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.37 E-value=2.2e-12 Score=121.64 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHhhhhhH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVGPS 102 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g~~ 102 (524)
.++..++.+..++++++|++.++|.++|. .+...+.+++|+++||++|+.++++++. ++.+.++++.++.++.++|
T Consensus 72 ~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~ 150 (192)
T TIGR00916 72 GAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSR 150 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCeEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 45566777778899999999999999997 7888888889999999999999998753 4678999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Q 009832 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQ 143 (524)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~ 143 (524)
++.|++||+++|+...+++.+++|.|++...+|++.+++.+
T Consensus 151 il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 151 IIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 30
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.33 E-value=1e-11 Score=143.22 Aligned_cols=129 Identities=24% Similarity=0.204 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCc-----cchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhh
Q 009832 25 LLGLSGVILVMLSVLGSVGFFSAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEV 99 (524)
Q Consensus 25 ~l~~~~~~~~~~a~~~~~Gl~~~~G~~-----~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~ 99 (524)
...+..++++++++.+++|+..|++.+ ++..+..+++.+++|+|+||.+|++++|+|+..+. .++++.++++++
T Consensus 769 ~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g-~~~av~~a~~~t 847 (910)
T TIGR00833 769 VAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPAG-NRTGIIRALGST 847 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcC-ccHHHHHHHHHh
Confidence 467788899999999999999876544 33323345577889999999999999999986433 468899999999
Q ss_pred hhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 009832 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD-FFLQVTAFVALIEVH 154 (524)
Q Consensus 100 g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~-~~~~lt~~pa~l~~~ 154 (524)
|.+|+.+++|++++|+++.++++|++++||+..++|++++ ++..++++|+++...
T Consensus 848 g~~I~~a~~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~ 903 (910)
T TIGR00833 848 GGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLL 903 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999995 666688889988543
No 31
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.32 E-value=2.3e-10 Score=134.32 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cC-CCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-ELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~-~~~~~~~i~~~l~~~g~~i~ 104 (524)
++...+++-++++.++.++.++|+++|. ++..--.+.+|+=|||++++....++. .+ +.++.++..++.++.+.|++
T Consensus 358 ~liv~~~IPisi~~t~~~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~ 436 (1021)
T PF00873_consen 358 ALIVALSIPISILGTFIFMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPIL 436 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5556677788999999999999999997 444433444555589999998776554 44 88999999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------h
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV---------------------------H 154 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~---------------------------~ 154 (524)
.+++||+++|+=..+.+ -.-++.|++..++++++.++.++|+.|++..+ |
T Consensus 437 ~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 437 ASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccch
Confidence 99999999998887766 55678899999999999999999999987721 2
Q ss_pred hccc---ccCcchhhhHHHHHHHHHHHHHhhhcccccc
Q 009832 155 APIL---GLWGVKMVVVSVFLAFTVASIALSTRIEAGL 189 (524)
Q Consensus 155 ~~~l---~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~ 189 (524)
.+.+ .+| |..++++++++++++++...+++.++
T Consensus 517 ~~lL~~~L~~--~~~~l~i~l~l~i~s~~l~~~l~~ef 552 (1021)
T PF00873_consen 517 RRLLRWALRH--PKLVLLIALLLLILSLFLFPFLPKEF 552 (1021)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHHHHHHHCTSEBES
T ss_pred hhhhhhhhhc--ccchhhhhhhhhhhhhcccccCCccc
Confidence 2211 122 44456666677777888777766544
No 32
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.29 E-value=1.1e-11 Score=124.23 Aligned_cols=129 Identities=10% Similarity=0.186 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHhhhh
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g 100 (524)
+..++..++++..+++.++|++.++|.++|. ........++|+++||++++.++++++. ++.+.+|++.++.++..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~ 228 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDL-TVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTL 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 3468889999999999999999999999997 6777778889999999999999998763 25789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
.|++.|++||+++|+...+...++++.|++...+|++.+.+.++++.|+++..
T Consensus 229 ~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~Gli~~~~~sl~i~p~l~~~ 281 (289)
T PRK13022 229 SRTIITSLTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLLW 281 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999998743
No 33
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.27 E-value=3.5e-10 Score=116.31 Aligned_cols=137 Identities=17% Similarity=0.260 Sum_probs=113.1
Q ss_pred EEEeecccCChhHHHHHHHHHHHHHHhhhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 009832 383 FRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWS 462 (524)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~ 462 (524)
+.+..+.-.+..+..+..+++++..++..+..|.+++..|.+.+..|....+.++......++++++++++++++++++.
T Consensus 90 ~~v~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~~~ 169 (333)
T PF03176_consen 90 VVVQLKGDPGSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSVRA 169 (333)
T ss_pred EEEEecCCcchhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHH
Confidence 33344432344556677888888888877556889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHhcccchHHH-HHHHHhhhhheechhHHHHHHHHhccc
Q 009832 463 SAIILVVLVMIVIDLLGV----MAILGIQLNAVS-VVNLIMSIGIAVEFCVHIVHAFLVSNI 519 (524)
Q Consensus 463 a~l~~l~i~~i~v~v~G~----M~l~gI~Ln~iS-~i~l~msIG~sVDfsaHi~~~f~~s~~ 519 (524)
+++..+++....+..+|+ +.++|+++|.++ ++..++.+|+++||++|+.++|.++.+
T Consensus 170 ~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~ 231 (333)
T PF03176_consen 170 ALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELR 231 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHH
Confidence 999999998888888887 567788998765 455678999999999999999987654
No 34
>COG4258 Predicted exporter [General function prediction only]
Probab=99.22 E-value=4.5e-09 Score=109.81 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHH
Q 009832 29 SGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLAS 107 (524)
Q Consensus 29 ~~~~~~~~a~~~~~Gl~~-~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ts 107 (524)
+|+++++.+.+.+.--.. .+| ++.. ++.++-+-++|+.+||.+++...-+..-...|+-+ ..+|..|.+...-
T Consensus 285 Lgvls~gig~laglvAt~laFg-~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~r----saaev~paL~lal 358 (788)
T COG4258 285 LGVLSIGIGALAGLVATLLAFG-ELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPWR----SAAEVRPALLLAL 358 (788)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh-hHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChhH----HHHHhhHHHHHHH
Confidence 455555555555543332 333 3454 56677778899999999886543322211233333 3788899999999
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhcccccC-cchhhhHHHHHHHH
Q 009832 108 LSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-----------VHAPILGLW-GVKMVVVSVFLAFT 175 (524)
Q Consensus 108 lT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~-----------~~~~~l~~~-~~k~~v~~~~~~~~ 175 (524)
+||.+||.+..++++|.+|++++|+..|+..+++.+.+++|.+.. ..++++.-+ .-|+......+++.
T Consensus 359 lTtvlayatmlfs~fpgLrQLa~faivGL~aAaltvrfllP~L~~~a~~rpv~~~arlarwlaa~~~~~w~la~llVal~ 438 (788)
T COG4258 359 LTTVLAYATMLFSPFPGLRQLAIFAIVGLLAAALTVRFLLPWLCRGAPVRPVPAMARLARWLAAWRRNKWLLAGLLVALA 438 (788)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHhcccccchhhhHHHHHH
Confidence 999999999999999999999999999999999999999999882 122232211 11111122222222
Q ss_pred H--HHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCC-CCcEEEEEec
Q 009832 176 V--ASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRV-GPPLYFVVKD 224 (524)
Q Consensus 176 ~--~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~-~~~v~iv~~~ 224 (524)
+ ...-|....+.+.|...+-|-+-.+..-.+.+....+. ...-++++++
T Consensus 439 ~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~Gapdvry~fvv~g 490 (788)
T COG4258 439 LASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALTGAPDVRYWFVVYG 490 (788)
T ss_pred HHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 2 23568889999999999988887666555555555542 2223455554
No 35
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.18 E-value=3.9e-10 Score=130.09 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=115.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhH
Q 009832 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (524)
Q Consensus 23 ~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~ 102 (524)
+++-++..++++++.++..+|+|.+.|+++|+ ++++.-.+-+|+|||++.|+.++|... ..++++|+.+||+++|.|
T Consensus 988 ~~~~a~iv~l~v~~i~v~v~G~M~lwgI~Lna-VS~vnLimsIGisVefsaHI~~~F~~~--~~~r~eR~~~AL~~~G~p 1064 (1145)
T TIGR00918 988 NPWTAGLIVLVLALMTVELFGMMGLLGIKLSA-IPVVILIASVGIGVEFTVHIALGFLTA--IGDRNRRAVLALEHMFAP 1064 (1145)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCccH-HHHHHHHHHHhhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHhhHH
Confidence 45556667778888888999999999999998 677777788999999999999999854 245799999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009832 103 ITLASLSEFLAFAVGSFIPMP-ACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (524)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip-~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~ 156 (524)
++.+++||++|.+++++++.+ .++.|+...+++|+++++..++++|.+|...+|
T Consensus 1065 Vl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp 1119 (1145)
T TIGR00918 1065 VLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGP 1119 (1145)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987 789999999999999999999999999965443
No 36
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.14 E-value=9.9e-09 Score=118.21 Aligned_cols=182 Identities=19% Similarity=0.266 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~t 106 (524)
++...+++-++++.+|++|.++|+++|. ++...-.|.+|+=|||+++.+..-+|..++.++.|+..++++|.+-|++-+
T Consensus 356 tlI~~iaiPlsLlgtf~~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~ 434 (1009)
T COG0841 356 TLIPALAVPVSLLGTFAVMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAI 434 (1009)
T ss_pred eEEeeeechHHHHHHHHHHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445566778999999999999999997 555555566666789999988766554338999999999999999999999
Q ss_pred HHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------hh---
Q 009832 107 SLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV-------------------------HA--- 155 (524)
Q Consensus 107 slT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~-------------------------~~--- 155 (524)
++|.+++|.=..+.+ =.-.|+|++..++++++.++..+|+.|.+=.+ |.
T Consensus 435 TlvliaVF~Pi~f~~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~~~~~~~~~~~~~~~~~Y~~~l 514 (1009)
T COG0841 435 TLVLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFFDRLEDRYQRGL 514 (1009)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence 999999997665433 35689999999999999999999999986521 10
Q ss_pred cccccCcchhhhHHHHHHHHHHHHHhhhccccccccc---------ccCCCCchhhhH---HHHHhhh
Q 009832 156 PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGY---FDNTTEY 211 (524)
Q Consensus 156 ~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~~~---------~~~p~~s~~~~~---~~~~~~~ 211 (524)
.++.+| |+.++++++++++.++|+..+++.++=|. -..|+++.+.+. .+..+++
T Consensus 515 ~~~L~~--~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~ 580 (1009)
T COG0841 515 RWVLRR--RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDW 580 (1009)
T ss_pred HHHHhh--HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 112223 66777888888888899999988877442 235777554433 3444544
No 37
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=98.98 E-value=2.4e-09 Score=105.12 Aligned_cols=121 Identities=12% Similarity=0.224 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-c--CCCCHHHHHHHHHhhhh
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-P--MELVLETRISNALVEVG 100 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~--~~~~~~~~i~~~l~~~g 100 (524)
+-.++..++++.++++.++|++.++|+++|. .+..-..+++|+.+||++++.++++|+ + ++.+.++++.++.++..
T Consensus 121 ~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~ 199 (246)
T TIGR00966 121 WRFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTL 199 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccCeEEEehHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 3367888889999999999999999999997 677777788999999999999988865 2 36789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVT 145 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt 145 (524)
+|++.|++||+++|+...+.+-+.+|.|++....|++...+.+++
T Consensus 200 ~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 200 SRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888899999999999999999888775
No 38
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=98.93 E-value=4.1e-09 Score=110.08 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++...++..+.++.++|++.++|.++|. ....--.+++|+++|+.+++.++++++ +++.+.++++.++.++++.+++
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~ 350 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIF 350 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeeeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999997 566666688899999999999999876 4567889999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~ 150 (524)
.|++|++++|+.+.+...+.+|.|++...+|+++.++.++++.+.+
T Consensus 351 ~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~~ 396 (397)
T TIGR01129 351 DANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396 (397)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998876777899999999999999999999987665
No 39
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=98.93 E-value=4.5e-09 Score=112.28 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++.+.++..++++.++|++.++|.++|. ....--.+.+|+++|+.+++.++.+++ +++.+..+++.++.+++..+++
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il 435 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTIL 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68888899999999999999999999997 566666788899999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
.|++||+++|+.+.+....++|.|++...+|++.+++.++++.|+++..
T Consensus 436 ~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l~~~ 484 (498)
T PRK05812 436 DSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNL 484 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876667899999999999999999999999998753
No 40
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=98.92 E-value=9.5e-09 Score=117.68 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=110.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHH
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i 103 (524)
+..++...++++.-.+-.+|.|.+.|+++|+ ++++.-.+.+|++||++.|+.++|.+...+ ++++|+++|+++.|.|+
T Consensus 669 ~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv 746 (798)
T PF02460_consen 669 PRSSLIVTLSILSIDVGVIGFMSLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPV 746 (798)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHH
Confidence 3344444445444455567999999999998 677777788899999999999999876544 89999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
+-++++|++|...+.+++.+.++.|.-...+.+++.++..+.++|++|.
T Consensus 747 ~~~~~st~l~~~~l~f~~~~~~~~ff~~~~l~~~~~~~hglv~lPv~ls 795 (798)
T PF02460_consen 747 LQGALSTFLGVLPLAFSPSYIFRVFFKTVFLVIIFGLLHGLVFLPVLLS 795 (798)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999873
No 41
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=98.89 E-value=5.5e-08 Score=91.33 Aligned_cols=131 Identities=17% Similarity=0.230 Sum_probs=110.5
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHh
Q 009832 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALV 97 (524)
Q Consensus 21 ~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~ 97 (524)
|-|...++.+++.....++.++|++.++|.++|. .....-.+++|.++||.+++.++.+|+. ++.+.++++.++++
T Consensus 51 rf~~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~ 129 (189)
T PF02355_consen 51 RFRWRFALAAIIALIHDVLITLGIFSLFGIELTL-PSIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIK 129 (189)
T ss_dssp HCTHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHH
Confidence 3344457888888888899999999999999997 5666667888999999999999999872 46789999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 98 ~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
++...+..|++|+.++.....+..-.+++.|++...+|++.+...++.+-++++.
T Consensus 130 ~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~ss~~ia~~l~~ 184 (189)
T PF02355_consen 130 QTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYSSLFIARPLLY 184 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888999999999999999999999988887764
No 42
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=98.83 E-value=2.5e-08 Score=100.14 Aligned_cols=123 Identities=12% Similarity=0.176 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHH
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i 103 (524)
++.++..+++....++.++|++.++|.++|. .+...-..++|+++||++++.+++++.. .+.+|++.+++++.
T Consensus 158 ~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~-~~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~---- 230 (292)
T PRK08578 158 PVPSLAVILSAFSDIIIALALMNLFGIELSL-ATVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG---- 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----
Confidence 4567778888889999999999999999997 4444444678999999999999997653 57888998888543
Q ss_pred HHHHHHHHHHHHhhccc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 104 TLASLSEFLAFAVGSFI----PMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s----~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
..+++||+++|+...+. ..+.+|.|++...+|++++++.++++-++++..
T Consensus 231 i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l~~Gli~s~~~tl~~~~~~l~~ 284 (292)
T PRK08578 231 ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLADLMNTWLLNAGILRW 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999987643 579999999999999999999999999998854
No 43
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.82 E-value=3.3e-08 Score=112.54 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~~ 105 (524)
++...+.+.+.++.++|++.++|.++|. ....--.+++|+++|+.+++..+.+++ +.+.+..+++.++.+++..+|+.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666777888899999999999997 555566688899999999999999876 45678999999999999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 106 ASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 106 tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
|++||+++++.+.+....+++.|++...+|++...+.++++.|+++.
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~ 1059 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFM 1059 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877667779999999999999999999999999874
No 44
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.78 E-value=2.5e-08 Score=112.23 Aligned_cols=130 Identities=12% Similarity=0.216 Sum_probs=116.1
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHh
Q 009832 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALV 97 (524)
Q Consensus 21 ~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~ 97 (524)
|-++-.++.++++.+.-++.++|++.++|.++|. .....-..++|.++||.+++.+++||+. ++.+.++.+.+++.
T Consensus 597 rF~~~~~~~aiial~~dvii~~g~~~l~~~~~~~-~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~ 675 (755)
T PRK13024 597 RFEWTFSLGAILALLHDVLIVIGFFSLFRLEVDL-TFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSIN 675 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceEcH-HHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHH
Confidence 3355578889999999999999999999999997 5555556778999999999999999863 45789999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 98 ~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
++....+.|++||+++++++.+...+.+|.|++.+.+|++.+...++++-++++
T Consensus 676 ~tl~rti~ts~tt~~~~~~L~~~g~~~i~~fa~~l~iGii~g~~ssifia~~l~ 729 (755)
T PRK13024 676 QTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLW 729 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766
No 45
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=98.71 E-value=6.4e-08 Score=96.83 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHhhhh
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g 100 (524)
+..++..+++...+++.++|.+.++|.+++. ...+--..++|++++|.+++.++.+|+. ++.+.+|++.++.++.-
T Consensus 149 ~~~~l~al~al~~dv~~~l~~l~l~g~~l~~-~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~l 227 (297)
T PRK13021 149 WRLASGALFALVHDVIFVLAFFALTQMEFNL-TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATF 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4467788889999999999999999999996 5666667888999999999999998763 45689999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
.|+++|++|++++.+.+.+..-+.+|.|++....|++.....++.+-++++
T Consensus 228 rr~l~TslTt~l~llpL~l~G~~~~~~fA~~li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 228 SRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988878899999999999999999999998766665
No 46
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=98.65 E-value=1.5e-07 Score=101.51 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-cCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~-G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i 103 (524)
.|+...++..+.++.++|++.++ |.++|. ....--.+.+|+.+|+.+++..+.+++ +++.+..+++.+..+++..++
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~I 542 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTI 542 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 47777788889999999999998 999996 555555677899999999999999876 456788999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
+.+++||+++|+.+.+..-.++|.|++..++|++..++.++++.|+++.
T Consensus 543 ldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l~~ 591 (604)
T PRK12933 543 FDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALIN 591 (604)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887666779999999999999999999999998874
No 47
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.56 E-value=2.2e-07 Score=109.31 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++..++++-++++.++..+.++|.++|. .+.+-..+++|+.+||++++++++++. +++.+.++++.++.++-..||+
T Consensus 904 ~~lii~~~iPl~~~g~~~~l~~~g~~l~~-~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl 982 (1051)
T TIGR00914 904 DALLVFTGIPFALTGGVFALWLRGIPLSI-SAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVL 982 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHH
Confidence 35556667777777777777889999997 666667778899999999999999865 4568899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
+|++||++||+-..+.+ .+..+.+++..+.|++++.+.++++.|+++.
T Consensus 983 ~ttltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~ 1033 (1051)
T TIGR00914 983 MTALVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYR 1033 (1051)
T ss_pred HHHHHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHHHHHH
Confidence 99999999999887653 4567789999999999999999999999874
No 48
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=98.50 E-value=5e-07 Score=85.30 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHH
Q 009832 434 IWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHA 513 (524)
Q Consensus 434 i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~ 513 (524)
..++...++..+++.+++++++..+ .+.++.+.+++....+..+|+|+++|+++|..+++.+++.+|++||+++|+..+
T Consensus 45 ~~~~~~~~l~~a~~lv~l~l~~~~r-~~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e~ 123 (192)
T TIGR00916 45 LIKAGIIALLIGLVLVLLYMLLRYE-WRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFDR 123 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehHH
Confidence 4456777888898999988888877 555666666666668889999999999999999999999999999999999999
Q ss_pred HHhcc
Q 009832 514 FLVSN 518 (524)
Q Consensus 514 f~~s~ 518 (524)
|.+..
T Consensus 124 ~~~~~ 128 (192)
T TIGR00916 124 IREEL 128 (192)
T ss_pred HHHHH
Confidence 97654
No 49
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=98.48 E-value=6.7e-07 Score=100.87 Aligned_cols=131 Identities=13% Similarity=0.207 Sum_probs=111.2
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHh
Q 009832 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALV 97 (524)
Q Consensus 21 ~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~ 97 (524)
|=++-.++.++++.+.-+++++|++.++|.+++. .....-..++|++++|++++.++++|+. ++.+.++.+..++.
T Consensus 692 RF~~~fa~~avial~hDv~i~~g~~~l~g~~ls~-~~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~ 770 (855)
T PRK14726 692 RFEWQFAVGAIIATLHDVILTLGLFVLTGIEFNL-TSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASIN 770 (855)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHH
Confidence 3344468888999999999999999999999997 5666666788999999999999998753 34566667777777
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 98 ~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
++...+++|++||+++++.+.+...+.++.|++...+|++.+...++++-++++.
T Consensus 771 ~tl~Rii~TslTTll~llpL~l~G~~~i~~fai~li~Gli~gt~sSifvAspll~ 825 (855)
T PRK14726 771 QTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLI 825 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777799999999999999988788999999999999999999999988888763
No 50
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=98.45 E-value=3e-06 Score=100.13 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHH
Q 009832 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 25 ~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
+-++...+++.++++-.+|+|.+.|+++|. ++.+.-.+.+|++|+.+-|+.++|.+. +..++++|+.++++++|.|++
T Consensus 1074 ~~aliv~l~I~~i~~~~~g~M~~~gisLN~-vSlv~Li~avGisV~f~~hI~~~f~~~-~~~~~~~ra~~al~~vg~~v~ 1151 (1204)
T TIGR00917 1074 LSAVNVVISVGMIVVNLVGIMHLWNISLNA-VSVVNLVMAKGISIEFCSHINAQFSTS-KHFSRNHRAKEALGGMGSSVF 1151 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Confidence 345666677788888899999999999998 666766777899999999999988754 345789999999999999999
Q ss_pred HH-HHHHHHHHHhhcccCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009832 105 LA-SLSEFLAFAVGSFIPMPACRVFSMFAALAV-LLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~t-slT~~~~F~~~~~s~ip~v~~f~~~~a~~v-~~~~~~~lt~~pa~l~ 152 (524)
.. ++|+++||+.+.+++...++.|---+-+++ ++..+=.+.|+|.+|.
T Consensus 1152 ~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS 1201 (1204)
T TIGR00917 1152 SGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLS 1201 (1204)
T ss_pred HHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 689999999999999999998766565544 7788888999998874
No 51
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=98.38 E-value=1.8e-06 Score=101.48 Aligned_cols=121 Identities=10% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhhhc--cCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 009832 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (524)
Q Consensus 395 ~~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~ 472 (524)
+..+..+++|+..++..+. .|+++...+.. .+.......+...++.+++++++++++++++++..++++.+++-.
T Consensus 298 n~~~v~~~v~~~l~~~~~~lp~g~~~~~~~d~---~~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r~~li~~~~iP~ 374 (1037)
T PRK10555 298 NEMATAKLVLNRLDELAQYFPHGLEYKVAYET---TSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPV 374 (1037)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhhHH
Confidence 3345555555555554322 14443333211 122234455677888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhcc
Q 009832 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSN 518 (524)
Q Consensus 473 i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~ 518 (524)
..++.+|+|+++|+++|.+|++.+++++|+.||+++|+..++.+..
T Consensus 375 si~~t~~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvve~i~~~~ 420 (1037)
T PRK10555 375 VLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 420 (1037)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhhheecCeEEeHHHHHHHH
Confidence 9999999999999999999999999999999999999999997653
No 52
>PRK09579 multidrug efflux protein; Reviewed
Probab=98.33 E-value=3.2e-06 Score=99.06 Aligned_cols=118 Identities=15% Similarity=0.320 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHhhhhcc--CCcccccchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 009832 394 GDYVNSLRAAREFSSRMSDTL--KINIFPYSVFYIFFEQY---LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (524)
Q Consensus 394 ~~~~~~~~~~r~i~~~~~~~~--~~~~~~~~~~f~f~eq~---~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l 468 (524)
.+..+..+++|+..++..+.. |++.... +||- .....++..++..+++.++++++++++++..++++.+
T Consensus 290 ~n~~~v~~~v~~~l~~~~~~lP~g~~~~~~------~d~~~~i~~~~~~~~~~l~~~~ilv~lvl~lfl~~~r~~l~~~~ 363 (1017)
T PRK09579 290 ANPLDVIKEVRAIMPELESQLPPNLKVSIA------YDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVV 363 (1017)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCcEEEEE------ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456666666666666543321 3443322 2332 2334556778888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhc
Q 009832 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS 517 (524)
Q Consensus 469 ~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s 517 (524)
++-...++.+++|.++|.+||.+|++.+++++|+.||.++|+..++.+.
T Consensus 364 ~IP~s~~~~~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e~i~~~ 412 (1017)
T PRK09579 364 TIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRH 412 (1017)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHHHHHHH
Confidence 9989999999999999999999999999999999999999999887654
No 53
>PRK09577 multidrug efflux protein; Reviewed
Probab=98.33 E-value=2.1e-06 Score=100.77 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhhhhc--cCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 009832 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (524)
Q Consensus 395 ~~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~ 472 (524)
+..+..+++++..++..+. .|++....+.. .+....-..++..++.++++.++++++++++++..++++.+++-.
T Consensus 297 n~~~v~~~v~~~l~~~~~~lP~g~~~~~~~d~---~~~i~~~i~~~~~~l~~~~ilv~lvl~l~l~s~r~~liv~~~iP~ 373 (1032)
T PRK09577 297 NAVATEKRVRATMDELSRYFPPGVKYQIPYET---SSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPV 373 (1032)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEEecC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555555555554321 24544333221 111122345667788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhc
Q 009832 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS 517 (524)
Q Consensus 473 i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s 517 (524)
..++.+++|.++|+++|.+|++.+++++|+.||+++|+..++.+.
T Consensus 374 s~~~~~~~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie~i~~~ 418 (1032)
T PRK09577 374 ALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERL 418 (1032)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHheeeEecCcEEEehHHHHH
Confidence 999999999999999999999999999999999999999988664
No 54
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.30 E-value=4e-06 Score=98.56 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++..++++-+|++-++-.+.++|.+++. .+.+--.+++||-++|++++++++++.+ ++.+.++++.++.++-..||+
T Consensus 896 ~pliI~~~iPlsl~G~~~~l~~~g~~l~~-~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIl 974 (1044)
T TIGR00915 896 IPVSVMLVVPLGIIGALLATSLRGLSNDV-YFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPIL 974 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHH
Confidence 35555667777777777667789999997 5555556778999999999999998654 467899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~ 154 (524)
+|++||++||+=.++.. -+..+.+++....|++++.+.++++.|+++...
T Consensus 975 mTtltti~gllPla~~~g~g~~~~~plai~vigGL~~st~ltL~vvP~ly~~~ 1027 (1044)
T TIGR00915 975 MTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVV 1027 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877653 356888999999999999999999999987543
No 55
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=98.29 E-value=2.7e-06 Score=99.99 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~~i~ 104 (524)
++..++++-+|++.++..+.++|.++|. .+.+--.+++||-++|+++++.+.++. +++.+..+++.++.++-..||+
T Consensus 898 pliI~~~IPls~~Ga~~~l~~~g~~l~~-~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIl 976 (1049)
T PRK15127 898 PFSVMLVVPLGVIGALLAATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPIL 976 (1049)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHH
Confidence 5556667778888888888899999997 555555677899999999999998764 3478899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
+|++||++||+=..+.. -+..+-+++....|++++.+.++++.|+++..
T Consensus 977 mTtlTti~gllPl~l~~G~g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~ 1028 (1049)
T PRK15127 977 MTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVV 1028 (1049)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887654 45677799999999999999999999998743
No 56
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=98.26 E-value=3.7e-06 Score=98.76 Aligned_cols=119 Identities=15% Similarity=0.210 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhhhhc--cCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 009832 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (524)
Q Consensus 395 ~~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~ 472 (524)
+..+..+++|+..++..+. .|++....+. ..+.......++..++.++++.++++++++++++..++++.+++-.
T Consensus 292 n~~~v~~~v~~~l~~~~~~lP~g~~~~~~~d---~~~~i~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r~~li~~~~ip~ 368 (1025)
T PRK10614 292 NIIQTVDRIRAKLPELRETIPAAIDLQIAQD---RSPTIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPV 368 (1025)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEeec---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555555555443321 1444332221 1222233445677788899999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHh
Q 009832 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV 516 (524)
Q Consensus 473 i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~ 516 (524)
..++.+++|+++|+++|.+|+..+++++|+.||+++|+..++.+
T Consensus 369 s~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv~e~i~~ 412 (1025)
T PRK10614 369 SLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISR 412 (1025)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhheeecCcEEEEeHHHH
Confidence 99999999999999999999999999999999999999866544
No 57
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=98.19 E-value=1.2e-05 Score=79.11 Aligned_cols=84 Identities=25% Similarity=0.302 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHH
Q 009832 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (524)
Q Consensus 433 ~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~ 512 (524)
.+.++.+..+.++++++++...+-.+ ++.++++.+++....++.+|.|.+.|+++|..++..+++.+|++||.++++..
T Consensus 95 ~~~~~~~~~~~la~i~i~l~l~~~f~-~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~d 173 (246)
T TIGR00966 95 ELARKAVLALLAALVLILIYITVRFE-WRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFD 173 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEeh
Confidence 34444445555554444443333223 67899999999999999999999999999999999999999999999999987
Q ss_pred HHHhc
Q 009832 513 AFLVS 517 (524)
Q Consensus 513 ~f~~s 517 (524)
++.+.
T Consensus 174 ~i~e~ 178 (246)
T TIGR00966 174 RIREN 178 (246)
T ss_pred HHHHH
Confidence 77643
No 58
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.19 E-value=1.2e-05 Score=84.59 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 009832 35 MLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAF 114 (524)
Q Consensus 35 ~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F 114 (524)
...++..+|++.++|.++|. ....--.+.+|+++|+.+++.++.+++.+ .+.++++.+.++++..+++.|++||++++
T Consensus 296 ~~~v~~~lg~l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~ 373 (417)
T PRK08343 296 LSEVIIILGFAALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAM 373 (417)
T ss_pred HHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999996 56666678889999999998877765422 36788889999999999999999999999
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 115 AVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 115 ~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
+.+.+....++|.|++...+|+++..+.+=-.+--++
T Consensus 374 lpL~~~g~g~ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 374 SPLAVMGLGDLKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888766677999999999999997665554444333
No 59
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=98.18 E-value=4.6e-06 Score=96.50 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHhhhhc--cCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 009832 394 GDYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLV 471 (524)
Q Consensus 394 ~~~~~~~~~~r~i~~~~~~~--~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~ 471 (524)
.+-++..+.+|+-.++..+. .|++.... +--.+.-..-.++...+++.|++.|++|+++|+++.++++++.+++-
T Consensus 288 aN~v~v~~~V~~~l~~l~~~lP~gv~~~~~---~D~t~~V~~si~~v~~tL~~a~~lVv~Vi~lFL~~~ratlI~~iaiP 364 (1009)
T COG0841 288 ANALDTAKAVKAKLAELQANLPQGVDIAIP---YDTTEFIKASIEEVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVP 364 (1009)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcEEEEe---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeEEeeeech
Confidence 34455555555555555443 14443221 11122233445678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHH
Q 009832 472 MIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHI 510 (524)
Q Consensus 472 ~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi 510 (524)
...++.|++|+++|.+||.+|+..+++|||+-||.++-+
T Consensus 365 lsLlgtf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVV 403 (1009)
T COG0841 365 VSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVV 403 (1009)
T ss_pred HHHHHHHHHHHHhCccchHhHHHHHHHhhheeEeccEEE
Confidence 999999999999999999999999999999999998643
No 60
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.16 E-value=7.1e-06 Score=96.40 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhh--ccCCCCHHHHHHHHHhhhhhHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR--QPMELVLETRISNALVEVGPSI 103 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~--~~~~~~~~~~i~~~l~~~g~~i 103 (524)
.++.-++++-+|++-++..+.++|.++|. ++.+--.+++||-+||+++++++..+ ..++.+++|++.++.++-..||
T Consensus 890 ~pliI~~tIPls~~G~~~~l~l~g~~l~~-~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPI 968 (1040)
T PRK10503 890 HPITILSTLPTAGVGALLALMIAGSELDV-IAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPI 968 (1040)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhH
Confidence 45555666677777776666789999997 56666667889999999999987654 3457889999999999999999
Q ss_pred HHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 104 TLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
++|++||++||+=.++.+ -+..+-+++....|++++.+.++++.|++...
T Consensus 969 lmTtltti~gllPlal~~G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~ 1021 (1040)
T PRK10503 969 LMTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLL 1021 (1040)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877643 34678899999999999999999999998743
No 61
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.16 E-value=7.5e-07 Score=99.27 Aligned_cols=129 Identities=20% Similarity=0.343 Sum_probs=111.9
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHH-hhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc----------------
Q 009832 21 SSKVLLGLSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---------------- 83 (524)
Q Consensus 21 ~s~~~l~~~~~~~~~~a~~~~~Gl~~-~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---------------- 83 (524)
.+..+..++++..+.++...++++.. .+|+.+-+.+..+.-++++|||.||.|.+.+.|+|..
T Consensus 346 t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~ 425 (999)
T KOG3664|consen 346 TGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLE 425 (999)
T ss_pred cCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccc
Confidence 34777899999999999999998886 5677877766777778899999999999999994411
Q ss_pred ---CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 84 ---MELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA 149 (524)
Q Consensus 84 ---~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa 149 (524)
.....+++....+.+...+|++|++|++.+|++...++++.+|.|+++++..+.+++..+++++|+
T Consensus 426 l~~~~~ll~~~~~l~~~h~~~smfvt~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa 494 (999)
T KOG3664|consen 426 LSDHTELLENVFALTLRHASFSMFVTSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPA 494 (999)
T ss_pred cccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccc
Confidence 113356677889999999999999999999999999999999999999999999999999999999
No 62
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=98.14 E-value=9.5e-06 Score=91.89 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=102.3
Q ss_pred HHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc
Q 009832 41 SVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFI 120 (524)
Q Consensus 41 ~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s 120 (524)
.+|.+.+-|+++++ ++++.-.+-+|-+||.+-|+.-+|.+.+++.++++|++.+++..|.|++-++++|++|...+.+.
T Consensus 718 V~G~lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V 796 (868)
T KOG1934|consen 718 VFGFLSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFV 796 (868)
T ss_pred HhhhhHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhc
Confidence 46888899999999 67777667777788999999877776655568999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009832 121 PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (524)
Q Consensus 121 ~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~ 156 (524)
|...++.|--..-+.+.+.++=.+.++|.+|..+.+
T Consensus 797 ~sYmv~vF~KTv~LVv~~GllHGLv~LPviLs~f~~ 832 (868)
T KOG1934|consen 797 PSYMVQVFFKTVVLVVTLGLLHGLVFLPVILSLFPP 832 (868)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999865443
No 63
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.13 E-value=2e-05 Score=78.96 Aligned_cols=135 Identities=11% Similarity=0.217 Sum_probs=114.6
Q ss_pred eeecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHH
Q 009832 19 YVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNA 95 (524)
Q Consensus 19 ~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~ 95 (524)
++|=++-.++.++++.+-=++.++|++.++|+++|. .....-.-++|-+++|.+++.++-||.. +..+..|.+..+
T Consensus 152 ~~RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~s 230 (305)
T COG0341 152 FFRFEWRFALAAILALLHDVIITLGFFSLFGIEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTS 230 (305)
T ss_pred heeeehHHHHHHHHHHHHHHHHHHHHHHHhheeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHH
Confidence 356666679999999999999999999999999997 5555556777889999999999999853 356677899999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009832 96 LVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (524)
Q Consensus 96 l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~ 154 (524)
+.++-.-...|++||.++..++.+-.-+.+++|++..-+|++.+...++.+=++++..+
T Consensus 231 i~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~llvGii~gtySSifiA~pll~~~ 289 (305)
T COG0341 231 INQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLLL 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99998888999999999988877666699999999999999999999998888877433
No 64
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=98.13 E-value=9.4e-06 Score=81.59 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHH
Q 009832 434 IWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHA 513 (524)
Q Consensus 434 i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~ 513 (524)
..++...++.+|+++|++++.+.+++++.++.+.+++..-.++.+|+|.++|+++|..++..+++.+|++||.++++..+
T Consensus 132 ~~~~~~~al~~alilI~i~l~l~F~s~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~dr 211 (292)
T PRK08578 132 FQEQALKAVGFAFIGMAVVVFLIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTR 211 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHHHHHheeecCcEEEehH
Confidence 45567789999999999999989999999999999999999999999999999999999999999999999999999888
Q ss_pred HHh
Q 009832 514 FLV 516 (524)
Q Consensus 514 f~~ 516 (524)
+..
T Consensus 212 i~~ 214 (292)
T PRK08578 212 VLK 214 (292)
T ss_pred HHH
Confidence 754
No 65
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=98.06 E-value=4.2e-05 Score=90.29 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.+.-++++-+|++-++-.+.++|.+++. ...+=-..+.||-+.|++++++++++.+ ++.+.+|++.++-++=-.||+
T Consensus 889 PliIm~~IPla~~G~~~~l~i~g~~l~~-~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIl 967 (1021)
T PF00873_consen 889 PLIIMLTIPLALIGVLLGLFITGQPLSF-MSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPIL 967 (1021)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTBEBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccchhhHHHHHHHhhccccccc-cceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 3344444555555555455688999996 5555556788999999999999998764 467899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~i---p~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
+|++||++|++=+++..- +-.+-+++...-|++++.+++++++|+++
T Consensus 968 mTtlTti~G~lPla~~~g~g~~~~~pla~~iigGL~~stllTL~vvP~ly 1017 (1021)
T PF00873_consen 968 MTTLTTILGMLPLALGIGEGAEFWQPLAIVIIGGLLFSTLLTLIVVPVLY 1017 (1021)
T ss_dssp HHHHHHHHHHHHHHTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccccccccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877553 56788999999999999999999999975
No 66
>COG4258 Predicted exporter [General function prediction only]
Probab=98.00 E-value=3.1e-05 Score=81.71 Aligned_cols=110 Identities=24% Similarity=0.332 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHH
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~t 106 (524)
++..++...+++.+++....+.|+++|. ..-+.-.|++|+|++|+..+.++= +++ .|... +-.++.+.
T Consensus 672 glrvllP~v~a~~~~~A~~a~aGvplnL-fhllal~LvlgvG~nYalFfs~~~---~~~---ae~lt-----tl~alala 739 (788)
T COG4258 672 GLRVLLPSVLALGCGLAVLAMAGVPLNL-FHLLALVLVLGVGINYALFFSNAG---DPR---AEPLT-----TLLALALA 739 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHcccchhhhhhccc---CCC---CchHH-----HHHHHHHH
Confidence 4445666778999999999999999996 666777899999999997765433 111 11111 56778899
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 107 SLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFV 148 (524)
Q Consensus 107 slT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~p 148 (524)
++||.++|+.+.+|.+|.++.||+..+.|++.+|++....-|
T Consensus 740 ~ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlApL~mp 781 (788)
T COG4258 740 MLTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLAPLAMP 781 (788)
T ss_pred HHHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999988765443
No 67
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=97.97 E-value=4.3e-05 Score=80.05 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHH
Q 009832 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (524)
Q Consensus 433 ~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~ 512 (524)
...+..+.++.+++++|++++++..+ ..++++.+++..-.+..+|+|++.|.++|..++.-+++++|++||+++++..
T Consensus 245 ~~i~~~~~a~~ig~ilV~l~~~~~yr--~~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~e 322 (397)
T TIGR01129 245 DSIEAGIKAGLIGLVLVLVFMILYYR--LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYE 322 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEeH
Confidence 34556778888999999999988888 5688888888888999999999999999999999999999999999999998
Q ss_pred HHHhcc
Q 009832 513 AFLVSN 518 (524)
Q Consensus 513 ~f~~s~ 518 (524)
++....
T Consensus 323 rire~l 328 (397)
T TIGR01129 323 RIKEEL 328 (397)
T ss_pred HHHHHH
Confidence 887643
No 68
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=97.96 E-value=0.0046 Score=69.15 Aligned_cols=159 Identities=22% Similarity=0.193 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHH-HHHhhcc----CCCCHHHHHHHHHhhhhh
Q 009832 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV-NAVKRQP----MELVLETRISNALVEVGP 101 (524)
Q Consensus 27 ~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~-~~~~~~~----~~~~~~~~i~~~l~~~g~ 101 (524)
++..+.+.-+|++.+|-.|..+|++-|.+ +.-=-.+-+|+=+|+++++. |+|++-. ....+-+.+.++.+|.++
T Consensus 361 Ali~~~~lPLS~li~f~~M~~~gi~~NlM-SLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~ 439 (1027)
T COG3696 361 ALIVIISLPLSLLIAFIVMNFFGISANLM-SLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGR 439 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhh-cccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhh
Confidence 45566677899999999999999998852 22211333444568876655 6776643 234456678889999999
Q ss_pred HHHHHHHHHHHHHHhhc-ccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhhccc
Q 009832 102 SITLASLSEFLAFAVGS-FIPMP--ACRVFSMFAALAVLLDFFLQVTAFVALIE--------------------VHAPIL 158 (524)
Q Consensus 102 ~i~~tslT~~~~F~~~~-~s~ip--~v~~f~~~~a~~v~~~~~~~lt~~pa~l~--------------------~~~~~l 158 (524)
|++++.+.-.+.|+=.. ++... .++=++..-.++++.+.+.++|+.|++.. .|.|.+
T Consensus 440 ~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~r~~~r~Y~plL 519 (1027)
T COG3696 440 PVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLMRFLIRVYAPLL 519 (1027)
T ss_pred hHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 99999888887775432 23222 22334555566777788899999999872 245544
Q ss_pred c---cCcchhhhHHHHHHHHHHHHHhhhccccc
Q 009832 159 G---LWGVKMVVVSVFLAFTVASIALSTRIEAG 188 (524)
Q Consensus 159 ~---~~~~k~~v~~~~~~~~~~si~g~~~i~~~ 188 (524)
. ++ +..+++..++.++++.+...++--+
T Consensus 520 ~~~l~~--p~~vl~~A~~~~~~s~~l~~~lG~e 550 (1027)
T COG3696 520 EFVLKL--PKLVLLGAVLSLVASLVLLPKLGRE 550 (1027)
T ss_pred HHHHcC--chHHHHHHHHHHHHHHHHHHhcchh
Confidence 2 22 2334555556666677777665543
No 69
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=97.93 E-value=4.5e-05 Score=76.65 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHH
Q 009832 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (524)
Q Consensus 432 ~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~ 511 (524)
..+.++....+.+++++|++...+.+ ++..++++++++..-.++.+|.|.+.|+++|..++..+++.+|++||.++|+.
T Consensus 123 ~~~~~~~~~a~~~al~~i~i~l~~~F-~~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG~sVnd~Ivv~ 201 (289)
T PRK13022 123 KELAQKGLLALLVALVGILIYIAFRF-EWRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIGYSLNDTVVVF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHheeceEEEe
Confidence 45667777888888888887766555 47788999999999999999999999999999999999999999999999998
Q ss_pred HHHHhc
Q 009832 512 HAFLVS 517 (524)
Q Consensus 512 ~~f~~s 517 (524)
.++...
T Consensus 202 drire~ 207 (289)
T PRK13022 202 DRIREN 207 (289)
T ss_pred eHHHHH
Confidence 887654
No 70
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.89 E-value=5e-05 Score=87.31 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=106.5
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHhh-----cCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHH
Q 009832 21 SSKVLLGLSGVILVMLSVLGSVGFFSAI-----GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRI 92 (524)
Q Consensus 21 ~s~~~l~~~~~~~~~~a~~~~~Gl~~~~-----G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i 92 (524)
|=++-.|+.+++..+-=++.++|++.++ |.++|. .....-.-++|-+++|++++.++.||.. ++.+.++-+
T Consensus 1254 RFEW~FAvgAVIALlHDVLItLGifsl~~f~lfgiEfdl-tfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eII 1332 (1403)
T PRK12911 1254 RFEWRYAFSAICALIHDLLATCAVLVALHFFLQKIQIDL-QAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILI 1332 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeEEcH-HHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHH
Confidence 3344568888888887788888887765 899996 4445555677889999999999999863 345677888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 93 SNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 93 ~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
-.++.++-.-.++||+||+++.+++.+-.-+.+++|.+.+.+|+++....++++-++++
T Consensus 1333 N~SINQTLsRTI~TSlTTLLallaLllFGG~sI~~FAlALLIGIIvGTYSSIFIASPLl 1391 (1403)
T PRK12911 1333 NDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLL 1391 (1403)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777899999999999999888899999999999999999999998777665
No 71
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=97.86 E-value=6.5e-05 Score=80.69 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=114.4
Q ss_pred eecchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc-cCCCCHHHHHHHHHhh
Q 009832 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVE 98 (524)
Q Consensus 20 v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~ 98 (524)
++-| ..|+.+.+...+.++..+|++.++|.+++. ....--.+.+|.+||.-+++..+-+++ +.+.+...++.+.+++
T Consensus 362 ~~Yr-~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~r 439 (506)
T COG0342 362 LYYR-LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKR 439 (506)
T ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHH
Confidence 3445 568888888888999999999999999996 555555688889999999999999876 5578999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 99 ~g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
+...|+=+.+||+++=..+..-..-++|-|++..++|++...+.++++.-.+++.
T Consensus 440 Af~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~~ 494 (506)
T COG0342 440 AFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNL 494 (506)
T ss_pred HHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999999999988999999999999999999999999877666543
No 72
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.86 E-value=7.4e-05 Score=83.65 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc---CCCCHHHHHHHHHhhh
Q 009832 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (524)
Q Consensus 23 ~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~ 99 (524)
++-.++.++++.+-=++.++|++.++|.++|. .....-..++|-+++|.+++.+|.||.. ++.+.+|.+-.++.++
T Consensus 600 ~~~fav~AviALiHDvlivlg~fsl~~~e~~l-~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqT 678 (758)
T PRK13023 600 RWQLALGAVLSTLHDVVILSGMFIVFRMEFNL-WSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQT 678 (758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCceecH-HHHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 44457778888888889999999999999997 5555556778899999999999999863 3467888899999998
Q ss_pred hhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 100 g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
-.-.+.||+||+++.+++.+-.-+++|+|++-+.+|++.....++++-++++
T Consensus 679 l~RTI~TS~TTll~~l~L~ifGg~~i~~Fal~lliGiv~GtySSIfIAspl~ 730 (758)
T PRK13023 679 LSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLL 730 (758)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888899999999999999888899999999999999999888887666655
No 73
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=97.46 E-value=0.00037 Score=74.95 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHH
Q 009832 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (524)
Q Consensus 433 ~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~ 512 (524)
...+..+.++++++++|++++++..+ ..++++.+++..-.+..+|+|.+.|.++|..++.-+++++|++||.++.+..
T Consensus 330 ~~i~~~~~A~lig~ilV~i~m~~~yr--~~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~E 407 (498)
T PRK05812 330 DSIRAGLIAGLIGLALVLLFMILYYR--LFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFE 407 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeH
Confidence 34566778888888889888888888 4688888888889999999999999999999999999999999999999988
Q ss_pred HHHhc
Q 009832 513 AFLVS 517 (524)
Q Consensus 513 ~f~~s 517 (524)
++...
T Consensus 408 rIree 412 (498)
T PRK05812 408 RIREE 412 (498)
T ss_pred HHHHH
Confidence 87654
No 74
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=97.19 E-value=0.003 Score=69.38 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=106.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhH
Q 009832 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (524)
Q Consensus 23 ~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~ 102 (524)
.+|-+.+.+.+......--+|+|++.|+++++ +-.++-...+|||+....|..-.|--.- .++.+|...++++...|
T Consensus 941 npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~-i~aViLi~sVGigveFtvhv~l~FlTs~--G~rs~R~s~al~~~F~P 1017 (1143)
T KOG1935|consen 941 NPWAAGLIVCSLAIMTVELFGFMGLLGIKLSA-IPAVILIASVGIGVEFTVHVALGFLTAL--GTRSQRASSALQHMFVP 1017 (1143)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhceeecc-chhHHHHHHhhhchhhhHHHHHHHHHhh--ccchhHhHHhhhhcchh
Confidence 46667666666666667778999999999998 6777777888999999998887775432 34567889999999999
Q ss_pred HHHHHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009832 103 ITLASLSEFLAFAVGSFIPMP-ACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (524)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip-~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~ 156 (524)
....+++|..|-+-++.++.. .+|.|+..+.+-+.+..+-.+.++|.+|...+|
T Consensus 1018 v~hG~lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP 1072 (1143)
T KOG1935|consen 1018 VSHGALSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGP 1072 (1143)
T ss_pred hhhhHHHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 999999999998888877765 578999988888888888888888887755443
No 75
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=97.18 E-value=0.0037 Score=58.80 Aligned_cols=85 Identities=27% Similarity=0.361 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHH
Q 009832 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (524)
Q Consensus 433 ~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~ 512 (524)
...++.+..++++++++++...+-.+. ..++.+.+.+..-.+-++|+|++.|+++|.-+...+++.+|.|||.++=+..
T Consensus 28 ~~~~~~~~a~~~al~~i~iyi~~rf~~-~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~IVifd 106 (189)
T PF02355_consen 28 DLLKSALIALIIALIAILIYIFLRFRW-RFALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDNIVIFD 106 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcceeehH
Confidence 345667778888888888877666663 3466666666666778999999999999999999999999999999999888
Q ss_pred HHHhcc
Q 009832 513 AFLVSN 518 (524)
Q Consensus 513 ~f~~s~ 518 (524)
+-.+..
T Consensus 107 RIre~~ 112 (189)
T PF02355_consen 107 RIREEL 112 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877663
No 76
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=97.16 E-value=0.0048 Score=65.09 Aligned_cols=79 Identities=28% Similarity=0.330 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHH
Q 009832 437 VALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFL 515 (524)
Q Consensus 437 ~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~ 515 (524)
..+....++++.|++.+++..+.+..++.+.+++.+-.+.++|+|.++|.+||..++.-+++++|++||..+.+.....
T Consensus 262 ~~l~a~ii~~ilVl~~m~~~yr~~~~i~~iaL~~~~~v~~~lg~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~ 340 (417)
T PRK08343 262 GSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVL 340 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHH
Confidence 4455666666777776777777766665555554555677899999999999999999999999999999998876543
No 77
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=97.16 E-value=0.0027 Score=74.07 Aligned_cols=125 Identities=22% Similarity=0.189 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-----hcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhh
Q 009832 26 LGLSGVILVMLSVLGSVGFFSA-----IGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVG 100 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~-----~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g 100 (524)
-+...+.++.++..+++|+..+ .|.+.....-...-.+++++|.||.+.++++.+|+.+....++ +.++++.+|
T Consensus 783 ~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g~~~~-ii~a~~~tg 861 (937)
T COG2409 783 APAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAGLRTG-IIRAMRGTG 861 (937)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhccccchh-hhhhhccCC
Confidence 3444455566777778777443 5666554222222236789999999999999999876555566 999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (524)
Q Consensus 101 ~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l 151 (524)
..++-..+.-+.+|++...+++..+++-|.-.++|++++-+..-+++++-+
T Consensus 862 ~Vit~ag~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~ 912 (937)
T COG2409 862 GVITAAGLIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAI 912 (937)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999988877776544
No 78
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=96.66 E-value=0.0052 Score=66.93 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheechhHHHHHH
Q 009832 437 VALINIAVALGAIFIVCLLMTSSL--WSSAIILVVLVMIVIDLLGVMAIL-GIQLNAVSVVNLIMSIGIAVEFCVHIVHA 513 (524)
Q Consensus 437 ~~~~~l~ia~~~vfvv~llli~~~--~~a~l~~l~i~~i~v~v~G~M~l~-gI~Ln~iS~i~l~msIG~sVDfsaHi~~~ 513 (524)
+.+.+...|++.++++++++.... ..++++.+++..-.+.++|+|+++ |.+||..++.-+++++|++||-++-+..+
T Consensus 437 ~~i~~gl~A~iig~vlV~lFm~~~Yr~~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~ER 516 (604)
T PRK12933 437 ENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFER 516 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEehH
Confidence 455566666666666666565544 568888889999999999999998 99999999999999999999998866554
Q ss_pred H
Q 009832 514 F 514 (524)
Q Consensus 514 f 514 (524)
-
T Consensus 517 I 517 (604)
T PRK12933 517 I 517 (604)
T ss_pred H
Confidence 4
No 79
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=96.33 E-value=0.015 Score=58.46 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHH
Q 009832 434 IWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHA 513 (524)
Q Consensus 434 i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~ 513 (524)
+.++.+..+.+|+++|++...+-+. +..++.+.+++..-.++.+|++.+.|.++|..+++-+++.+|++++.++=+.-+
T Consensus 124 ~~~~~~~a~~~ali~I~lyl~~rF~-~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~dr 202 (297)
T PRK13021 124 LAEQGGLALLVAMLCILGYLSYRFE-WRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADR 202 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEeeH
Confidence 4566777888888888887765555 677788888888889999999999999999999999999999999999877666
Q ss_pred HHhc
Q 009832 514 FLVS 517 (524)
Q Consensus 514 f~~s 517 (524)
+.+.
T Consensus 203 ire~ 206 (297)
T PRK13021 203 IREL 206 (297)
T ss_pred HHHH
Confidence 6543
No 80
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.039 Score=61.97 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=74.8
Q ss_pred HHHHHhhhhccCCcccccchhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009832 404 REFSSRMSDTLKINIFPYSVFYIFFEQYL---DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGV 480 (524)
Q Consensus 404 r~i~~~~~~~~~~~~~~~~~~f~f~eq~~---~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~ 480 (524)
+++-+..|+ |+++.++ +||-. .-..+.-.++.=..+.|.+++++|+.|+.+++++...+-....--|-+
T Consensus 307 ~elk~~LP~--gVki~~~------ydRs~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~RsAli~~~~lPLS~li~f~~ 378 (1027)
T COG3696 307 EELKKSLPE--GVKIVTT------YDRSELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRSALIVIISLPLSLLIAFIV 378 (1027)
T ss_pred HHHHhhCCC--CcEEEEE------eeHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 6666554 33333 223455666676778899999999999999999888875555555668
Q ss_pred HHHhcccchHHHHHHHHhhhhheechhHHHHH
Q 009832 481 MAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (524)
Q Consensus 481 M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~ 512 (524)
|..+|++.|..|.=-+.++||.-||-++-+..
T Consensus 379 M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vE 410 (1027)
T COG3696 379 MNFFGISANLMSLGGLAIAIGAMVDAAIVVVE 410 (1027)
T ss_pred HHHcCCcchhhcccchheeeeeeecceEEeeh
Confidence 99999999999999999999999999875543
No 81
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=95.96 E-value=0.022 Score=57.36 Aligned_cols=78 Identities=23% Similarity=0.390 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHH
Q 009832 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (524)
Q Consensus 433 ~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~ 511 (524)
.+.++.+..+++|+++|++-..+-+.-.. |+-++++.+.=.+-.+|+|++.|+++|.-+...+++-||.||+.++=+.
T Consensus 131 eL~~~~~~Al~~alv~I~iYV~~RFe~~~-a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvf 208 (305)
T COG0341 131 ELARQGLLALLLALVGILIYVFFRFEWRF-ALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVF 208 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeehHH-HHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHeeeccCCeEEEE
Confidence 35667777888888888777665555444 7777777777777789999999999999999999999999999887443
No 82
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=93.79 E-value=0.23 Score=53.73 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheechhHHHHHH
Q 009832 436 RVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHA 513 (524)
Q Consensus 436 ~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~ 513 (524)
+..+....+++++|++..++..+ ..++++.+.+..-.+-++|.|++.|.+|+.-++.-++++||++||--+-|...
T Consensus 343 ~~gi~Agl~g~~~V~vfm~~~Yr--~~Gvia~ial~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ER 418 (506)
T COG0342 343 KAGLIAGLIGLALVAVFMLLYYR--LAGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFER 418 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHhhhhcccccEEeeHH
Confidence 34555666777777777776667 45677777776667778999999999999999999999999999976555443
No 83
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=92.92 E-value=0.34 Score=43.92 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheechhHHHHHHHHhcccc
Q 009832 459 SLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSV-VNLIMSIGIAVEFCVHIVHAFLVSNIR 520 (524)
Q Consensus 459 ~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~-i~l~msIG~sVDfsaHi~~~f~~s~~~ 520 (524)
+++.++..++.+++..+.-+|+.++.|++++++.. +.--+.+|+|+|...|+.+++.+.+..
T Consensus 5 ~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~ 67 (153)
T PF12349_consen 5 RFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSS 67 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhccc
Confidence 35556666667776777778999999999999987 666688999999999999999876643
No 84
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=67.49 E-value=36 Score=31.51 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=11.4
Q ss_pred hhHHHhhhHHHhhhCCC
Q 009832 337 TEQFREKLPWFLNALPS 353 (524)
Q Consensus 337 ~~~f~~~l~~fl~~~p~ 353 (524)
+++|.+.|+..|+..|.
T Consensus 3 k~efL~~L~~~L~~lp~ 19 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPE 19 (181)
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 56777777777765554
No 85
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=66.31 E-value=0.71 Score=54.30 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHH-HHHHHHHHHHH
Q 009832 37 SVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSIT-LASLSEFLAFA 115 (524)
Q Consensus 37 a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~-~tslT~~~~F~ 115 (524)
.++--.|+|...|++.|. .+.+--..-+||+++...|+.+.+..... .+.++|..+++...|.++. -.++|...+-.
T Consensus 1057 ~~v~l~g~m~~~~I~~Na-vS~vNlvm~vgi~vef~~hi~~sf~~s~~-~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~ 1134 (1201)
T KOG1933|consen 1057 ILVNLVGFMYLWGISLNA-VSLVNLVMSVGIAVEFCVHITHSFATSSG-PDATERAEEALNSIGSSVFSGITLTKFGGII 1134 (1201)
T ss_pred hhhhHHHHHHhhceeehh-hhhhhhhhhcchhhhHHHHhhcceeeccC-CchhHHHHHHHhccCcceecceeehhcCceE
Confidence 334456999999999997 55554566789999999999998875533 3789999999999988863 23455566666
Q ss_pred hhcccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 009832 116 VGSFIPMPACRVFSMFAALAVLLDF-FLQVTAFVALI 151 (524)
Q Consensus 116 ~~~~s~ip~v~~f~~~~a~~v~~~~-~~~lt~~pa~l 151 (524)
.+.+.+...++.|+.-+-+|+++.- +.-+.|+|.++
T Consensus 1135 vl~fa~s~i~~~~~f~~~l~~~l~~a~hGliflpvll 1171 (1201)
T KOG1933|consen 1135 VLSFAKSQIFQVFYFRMYLGIVLVGALHGLIFLPVLL 1171 (1201)
T ss_pred EEeeccccEEEEEeehHHHHHHHHHheeeeeehhhHH
Confidence 6667666666665544444443322 22255555554
No 86
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=45.75 E-value=1.9e+02 Score=24.60 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=10.4
Q ss_pred cCchHHHHHHHHHHHHHHH
Q 009832 120 IPMPACRVFSMFAALAVLL 138 (524)
Q Consensus 120 s~ip~v~~f~~~~a~~v~~ 138 (524)
.+.|..++.+...+..+.+
T Consensus 88 ~~~p~~~~a~~~l~~~~~~ 106 (111)
T PF09946_consen 88 NSYPEYTDAGFVLAFSLAF 106 (111)
T ss_pred ccChhHhHHHHHHHHHHHH
Confidence 3566766666554444433
No 87
>COG4709 Predicted membrane protein [Function unknown]
Probab=39.89 E-value=2.4e+02 Score=26.45 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred ChhHHHhhhHHHhhhCCCCcccC--CCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHhhhhc
Q 009832 336 STEQFREKLPWFLNALPSADCAK--GGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT 413 (524)
Q Consensus 336 ~~~~f~~~l~~fl~~~p~~~c~~--~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~ 413 (524)
++.+|.+.|+.+|+.+|..+-.+ ..+..|=++-.-+|.+.++| .+++.+..|....++.-+.+-+.-.
T Consensus 2 tk~efL~eL~~yL~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI--------~~~LG~P~eiA~ei~s~~~~k~~~~-- 71 (195)
T COG4709 2 TKTEFLNELEQYLEGLPREERREIMYDYEEHFREAQEAGKSEEEI--------AKDLGDPKEIAAEILSERGIKKEEV-- 71 (195)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHH--------HHHhCCHHHHHHHHHHHccchHHhc--
Q ss_pred cCCcccccchhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH------HHHHHHHHHHH
Q 009832 414 LKINIFPYSVFYIFFEQYLDIWRV-----ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLV------MIVIDLLGVMA 482 (524)
Q Consensus 414 ~~~~~~~~~~~f~f~eq~~~i~~~-----~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~------~i~v~v~G~M~ 482 (524)
.+.+++-..-+....-+.+... +...++.+++.+++..+.++.+++.-+...+... +...-..+++.
T Consensus 72 --~~~~~n~~~aii~~~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~agil~g~~~~~e~~~~i~~~i~a 149 (195)
T COG4709 72 --KPTQKNVRRAIIALIGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILGVESLFLIGSSISA 149 (195)
T ss_pred --cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q ss_pred HhcccchHHHHHHHHhhhhheechhHHHHHHHHhcccc
Q 009832 483 ILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSNIR 520 (524)
Q Consensus 483 l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~~~ 520 (524)
....-=.....+.+.+.+=..+.|+..+.-.|..-..|
T Consensus 150 ~f~~IGs~lLgl~~~~~if~iv~~~~rl~~~~i~w~ik 187 (195)
T COG4709 150 FFIGIGSLLLGLGLGIVIFAIVKYASRLTGKYIKWHIK 187 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 88
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=39.46 E-value=3.9e+02 Score=26.85 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhH---HHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHH
Q 009832 31 VILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM---CILVNAVKRQPMELVLETRISNALVEVGPSITLAS 107 (524)
Q Consensus 31 ~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~---~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~ts 107 (524)
++.+.++.=++|=+-...|+||=. +-.+|.+-+.-|+.-+ ..+....++.. +.++--.+.+.+...++..+-
T Consensus 140 i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~~---~~~~~~~~~~~r~~~~v~~~e 214 (305)
T COG3301 140 ILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTRE---NPHSTESKFLHRFEIPVVVTE 214 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcCC---CccchhhHHHHHHHHHHHHHH
Confidence 344444444555566688999754 3578877776655442 22222332221 233445678889999999999
Q ss_pred HHHHHHHHhhc-ccCchHHHHHH
Q 009832 108 LSEFLAFAVGS-FIPMPACRVFS 129 (524)
Q Consensus 108 lT~~~~F~~~~-~s~ip~v~~f~ 129 (524)
+-...+|..+. +-+.-+.|.+.
T Consensus 215 ll~la~f~~l~~~G~~a~~~a~~ 237 (305)
T COG3301 215 LLLLAAFFVLLSLGGVAAARALA 237 (305)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999998875 55555555443
No 89
>PF14184 YrvL: Regulatory protein YrvL
Probab=38.40 E-value=1.2e+02 Score=26.79 Aligned_cols=54 Identities=20% Similarity=0.493 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHH----HhhhhheechhHHHHHHHHhcc
Q 009832 465 IILVVLVMIVIDLLGVMAILGIQLNAVSVVNL----IMSIGIAVEFCVHIVHAFLVSN 518 (524)
Q Consensus 465 l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l----~msIG~sVDfsaHi~~~f~~s~ 518 (524)
+.....+....+..|+|.+.|++-|++..+.+ ...+|+..|.-.+..-+.+...
T Consensus 13 ~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~ 70 (132)
T PF14184_consen 13 LLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFL 70 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344455778889999999999999998765 4455666776666655554443
No 90
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=37.04 E-value=68 Score=34.00 Aligned_cols=15 Identities=33% Similarity=0.915 Sum_probs=8.8
Q ss_pred HHHHHhhhhheechhH
Q 009832 493 VVNLIMSIGIAVEFCV 508 (524)
Q Consensus 493 ~i~l~msIG~sVDfsa 508 (524)
.+-+..++|.| ||++
T Consensus 234 g~~la~aV~~S-DFC~ 248 (406)
T PF04906_consen 234 GLELAAAVGLS-DFCV 248 (406)
T ss_pred HHHHHhccchh-hhcc
Confidence 45566666666 5553
No 91
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.56 E-value=98 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HhhcCccchhhhhhhhhhhhhhc--hhhHHHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFF--SAIGVKSTLIIMEVIPFLVLAVG--VDNMCILV 76 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~--~~~G~~~~~~~~~~~Pfl~l~ig--vd~~~~l~ 76 (524)
++.+|.+...+++..-.|+. -|+...+..-....++++++|++ .-++.+.+
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444444 36666655323455667777654 44444443
No 92
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=34.39 E-value=93 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009832 447 GAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGI 486 (524)
Q Consensus 447 ~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI 486 (524)
..++++..+++.|. +.|..++++|+-.+|+|
T Consensus 42 Gi~~~~~Sl~~~~~---------~~S~llgv~g~s~lWsI 72 (94)
T PF14898_consen 42 GIACIIASLFVSNV---------IWSALLGVLGFSCLWSI 72 (94)
T ss_pred HHHHHHHHHHHcch---------HHHHHHHHHHHHHHHhH
Confidence 34444455555553 35677899999999986
No 93
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=33.45 E-value=6e+02 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHhhhhheechhH
Q 009832 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCV 508 (524)
Q Consensus 473 i~v~v~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsa 508 (524)
...|++.+..-|. ...+-+..++|.| ||+.
T Consensus 242 s~~g~l~l~~~W~-----~~~~~l~~~v~~s-DfC~ 271 (418)
T cd07912 242 SVCGLFALIISWL-----SLGLYLASAVALS-DFCV 271 (418)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhhh-hhhc
Confidence 3444444444554 2244455556555 5554
No 94
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=30.29 E-value=2.5e+02 Score=28.15 Aligned_cols=61 Identities=20% Similarity=0.068 Sum_probs=32.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCH
Q 009832 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVL 88 (524)
Q Consensus 22 s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~ 88 (524)
.||+--.++++.+.++...++. -+..++. ...++ .++-++.+.-..-+.|.|.+.+++.|.
T Consensus 6 ~Rp~tl~~s~~pv~lG~alA~~----~~~~f~~-~~~ll-~li~~l~~q~~~N~~Ndy~D~~~G~D~ 66 (285)
T TIGR02235 6 IKPPLYSVAVMPILVGTAVAWG----QGGVFHL-DRFAL-FLIAAILILAWINLTNDVFDSDTGIDR 66 (285)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH----cCCCcCH-HHHHH-HHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 3555445566666666555532 3336665 22222 233345555566778888876654443
No 95
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=28.81 E-value=1.9e+02 Score=29.34 Aligned_cols=59 Identities=14% Similarity=-0.000 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCC
Q 009832 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELV 87 (524)
Q Consensus 23 ~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~ 87 (524)
||+--.++++.+.++...++ +.+..++. ....+ .++-++.+.-...+.|.|.+.+++.|
T Consensus 20 RP~tl~asl~pv~lG~a~a~----~~~~~f~~-~~~ll-~ll~~~l~q~~~N~~NDy~D~~~G~D 78 (304)
T PRK07419 20 KPPMYSVAIMPILVGTAWAL----GETGVFRL-DQFIT-FLLAAILILAWENLSNDVFDADTGID 78 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HcCCCccH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66544455655555555543 33446665 22222 23333444555667888877655444
No 96
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=28.79 E-value=86 Score=34.63 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=24.1
Q ss_pred hhhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 009832 6 SVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGV 50 (524)
Q Consensus 6 ~~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~ 50 (524)
.++++.++..+.++.|=-.+.++.+.++.+++....|.++++.+.
T Consensus 343 L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~ 387 (629)
T KOG3659|consen 343 LIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMAT 387 (629)
T ss_pred hhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666665455566655555655555555544444444444433
No 97
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=27.41 E-value=18 Score=41.86 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHhcccchHHHHHHHHhhhhheechhHHHHHHHHhcc
Q 009832 465 IILVVLVMIVIDL---LGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSN 518 (524)
Q Consensus 465 l~~l~i~~i~v~v---~G~M~l~gI~Ln~iS~i~l~msIG~sVDfsaHi~~~f~~s~ 518 (524)
+.+.++...+.+. +..|.+.|..+...-++++.+.+|.++||+.|+.+++....
T Consensus 833 ~~t~~i~~~i~~~~e~laa~~~~g~~~~~~ea~~lp~~~~ssfdytlh~vs~~~d~~ 889 (999)
T KOG3664|consen 833 LLTVAIHYSIGTEVEPLAASPLLGWRLGVLEATILPIGVGSSFDYTLHIVSALSDTG 889 (999)
T ss_pred HHhhHhhhhhcccccccccchhhhhhhhhceeccCceeeecchhheeeeeeeecccc
Confidence 3344444444444 48999999999999999999999999999999999775543
No 98
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.94 E-value=4.6e+02 Score=28.05 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHh--hcccCchHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------Hh
Q 009832 90 TRISNALVEVGPSITLASLSEFLAFAV--GSFIPMPACRVFSMFAALAVLLDFFLQVT----AFVALI----------EV 153 (524)
Q Consensus 90 ~~i~~~l~~~g~~i~~tslT~~~~F~~--~~~s~ip~v~~f~~~~a~~v~~~~~~~lt----~~pa~l----------~~ 153 (524)
+.-.++.|.+..++++=.+|=++-|+. ..-.++.++|..=+-.|+.++...+.++. |-.|.+ ..
T Consensus 289 d~Y~~~~Ra~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~ 368 (430)
T PF06123_consen 289 DHYQKSERAVKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISL 368 (430)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 344556666667777777666655555 33568999998877777777665554432 111111 23
Q ss_pred hhcccccCcchhhhHHHHHHHHHHHHHhhhccc
Q 009832 154 HAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186 (524)
Q Consensus 154 ~~~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~ 186 (524)
|...+.+.+++..+....++.+-.-+|++.+.|
T Consensus 369 Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~E 401 (430)
T PF06123_consen 369 YLSSVLKSWKRGLIFAGLLAALYGFLYVLLQSE 401 (430)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666566555555555556667776654
No 99
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=25.74 E-value=20 Score=28.69 Aligned_cols=21 Identities=14% Similarity=0.002 Sum_probs=11.8
Q ss_pred hhhcCccccceeeeecchhhH
Q 009832 7 VALGDTPRFSSFYVSSKVLLG 27 (524)
Q Consensus 7 ~~l~~~~~~~~~~v~s~~~l~ 27 (524)
+++|.|+.+.+-+|+++|+++
T Consensus 19 ~~lG~wfHIvarLV~~~P~mA 39 (93)
T PF09679_consen 19 FSLGFWFHIVARLVYRQPEMA 39 (93)
T ss_pred hHHHHHHHHHHHHHHhChHHH
Confidence 445555544445566666655
No 100
>PRK11715 inner membrane protein; Provisional
Probab=25.18 E-value=4.4e+02 Score=28.20 Aligned_cols=95 Identities=12% Similarity=-0.013 Sum_probs=56.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHh--hcccCchHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------Hhhh
Q 009832 92 ISNALVEVGPSITLASLSEFLAFAV--GSFIPMPACRVFSMFAALAVLLDFFLQVT----AFVALI----------EVHA 155 (524)
Q Consensus 92 i~~~l~~~g~~i~~tslT~~~~F~~--~~~s~ip~v~~f~~~~a~~v~~~~~~~lt----~~pa~l----------~~~~ 155 (524)
-.++-|.+..++++=.+|=++-|+. ..-.++.++|..=+-.|++++...+.++. |-.|-+ ..|.
T Consensus 297 Y~~~~RA~KYgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~ 376 (436)
T PRK11715 297 YQKTERAVKYAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYL 376 (436)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 3445555566677766666555554 34578999998877777777665555442 111111 2355
Q ss_pred cccccCcchhhhHHHHHHHHHHHHHhhhccc
Q 009832 156 PILGLWGVKMVVVSVFLAFTVASIALSTRIE 186 (524)
Q Consensus 156 ~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~ 186 (524)
..+.+.+++..+....++.+-.-+|++.|.|
T Consensus 377 ~~vl~~~k~g~~~~~~L~~LYg~Ly~lLq~E 407 (436)
T PRK11715 377 SAVLRSWKRGLLFAAALAALYGVLYGLLQSE 407 (436)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666655555555556667776654
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.03 E-value=1.1e+02 Score=28.36 Aligned_cols=15 Identities=0% Similarity=-0.177 Sum_probs=6.1
Q ss_pred HHHHHHHhhcCccch
Q 009832 40 GSVGFFSAIGVKSTL 54 (524)
Q Consensus 40 ~~~Gl~~~~G~~~~~ 54 (524)
.+.+.+.++|..+.+
T Consensus 21 ~gI~~Lv~~~~~l~~ 35 (191)
T PF04156_consen 21 SGIAALVLFISGLGA 35 (191)
T ss_pred HHHHHHHHHHhhhHH
Confidence 333334444443443
No 102
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=21.72 E-value=4.3e+02 Score=26.87 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHH
Q 009832 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLE 89 (524)
Q Consensus 23 ~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~ 89 (524)
||+--.++++.+.++...+. +-+.+++. .. .+-+++-++.++-.--+.|.|.+.+++.|.+
T Consensus 11 Rp~tl~~s~~pvllG~a~a~----~~~~~~~~-~~-~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~ 71 (317)
T PRK13387 11 EIHTKIASFFPVILGTLFSL----YVAKIFDW-LL-FLAFMVAMLAFDIATTAINNYMDFKKALDTA 71 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HhCCCccH-HH-HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcc
Confidence 45444455555555554443 33346664 21 2222222233455556778887765554443
No 103
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=21.69 E-value=26 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.015 Sum_probs=21.7
Q ss_pred hhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCc
Q 009832 7 VALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVK 51 (524)
Q Consensus 7 ~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~ 51 (524)
+++|.|...-+-+|+++||+++. +|-+.+.|+..+-|+.
T Consensus 19 ~~lG~wfhiVarlVy~~P~mA~~------laeliav~lVl~G~YR 57 (80)
T TIGR02741 19 FSLGIWFHIVSRLVYRKPWMAFF------LAELIAVILVLWGAYR 57 (80)
T ss_pred hHhhHHHHHHHHHHHcChHHHHH------HHHHHHHHHHHhhHHH
Confidence 45666654445568888887643 3444444444444443
No 104
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=21.57 E-value=5.9e+02 Score=22.81 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=34.0
Q ss_pred hhhchhhHHHHHH-HHhhccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHH
Q 009832 65 LAVGVDNMCILVN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPAC 125 (524)
Q Consensus 65 l~igvd~~~~l~~-~~~~~~~~~~~~~~i~~~l~~~g~~i~~tslT~~~~F~~~~~s~ip~v 125 (524)
++-++.+++-|.- .|-.++.+++.+++ .| ...++++.++|..+...|+-|.
T Consensus 37 l~~~iA~a~SMa~G~YlS~kse~d~~~~---------~p-~~~al~s~~sf~~g~~iPllp~ 88 (149)
T cd02431 37 LIVGIAAALSMAIGAYLSTKSESGVKES---------NP-VKSALYTGIAYIIGVVIPILPY 88 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHhc---------ch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677766654 77666554444444 34 5888999999999987775554
No 105
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=21.39 E-value=4.8e+02 Score=25.95 Aligned_cols=15 Identities=13% Similarity=-0.124 Sum_probs=8.7
Q ss_pred hhHHHHHHHHhhccC
Q 009832 70 DNMCILVNAVKRQPM 84 (524)
Q Consensus 70 d~~~~l~~~~~~~~~ 84 (524)
.-.-...|.|.+.++
T Consensus 51 ~~~~n~~Ndy~D~~~ 65 (293)
T PRK06080 51 QIATNLANDYGDYVK 65 (293)
T ss_pred HHHHHHHHhHHHhcc
Confidence 445566777766543
No 106
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=21.28 E-value=3.7e+02 Score=26.95 Aligned_cols=61 Identities=8% Similarity=-0.074 Sum_probs=28.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCH
Q 009832 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVL 88 (524)
Q Consensus 22 s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~ 88 (524)
.||+--.++++.+.++...+. +-+..++. .. .+-+++-++.+.-+--+.|.|.+.+++.|.
T Consensus 11 ~Rp~tl~~s~~~v~lG~a~a~----~~~~~f~~-~~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~ 71 (296)
T PRK05951 11 TRPWSFVMTAIVAFFSIAYGY----YLFRSFDP-LL-GALMLLGYFLLHASLNVFNDYKDYVLDCDH 71 (296)
T ss_pred HhHHHHHHHHHHHHHHHHHHH----HhcCCcCH-HH-HHHHHHHHHHHHHHHHHHHhHHHHhcCCcc
Confidence 355544555555555444433 22335664 22 122222223344455567777664444333
No 107
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=21.21 E-value=4.3e+02 Score=26.76 Aligned_cols=68 Identities=22% Similarity=0.450 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHH
Q 009832 28 LSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (524)
Q Consensus 28 ~~~~~~~~~a~~~~~Gl~~-~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~t 106 (524)
+++++++...++.++.+.+ -+|.+--. .....|.++++..++.+-+ -|+|+- .++++.+.+-|.+.+
T Consensus 194 isaVli~VI~ii~~~sv~~~klGl~~gl-sVtfFPmIILawTIERmSi---lWEEeG--------~~ev~~qg~GSLlvA 261 (313)
T PF14402_consen 194 ISAVLIVVILIIAAFSVLSYKLGLEEGL-SVTFFPMIILAWTIERMSI---LWEEEG--------AKEVLKQGGGSLLVA 261 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCC-eeehHHHHHHHHHHHHHHh---hhhhcC--------cHHHHHHhhhHHHHH
Confidence 3455555566666666665 47777554 5668999999888876533 366543 355666666665443
Q ss_pred H
Q 009832 107 S 107 (524)
Q Consensus 107 s 107 (524)
.
T Consensus 262 v 262 (313)
T PF14402_consen 262 V 262 (313)
T ss_pred H
Confidence 3
No 108
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.72 E-value=3e+02 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.431 Sum_probs=25.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhh
Q 009832 455 LMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSI 500 (524)
Q Consensus 455 lli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln~iS~i~l~msI 500 (524)
++.+++|... +...+....+|.++.+|-.-..++...++++|
T Consensus 18 l~~~~~~l~~----~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v 59 (284)
T PF12805_consen 18 LLFPYPWLLI----LVLALLTFFFGMLGVYGPRAATIGFATLLVAV 59 (284)
T ss_pred HHhhccHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445554432 33344556777888888877777766665443
No 109
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=20.72 E-value=28 Score=27.03 Aligned_cols=39 Identities=18% Similarity=0.017 Sum_probs=22.7
Q ss_pred hhhcCccccceeeeecchhhHHHHHHHHHHHHHHHHHHHHhhcCc
Q 009832 7 VALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVK 51 (524)
Q Consensus 7 ~~l~~~~~~~~~~v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~ 51 (524)
+++|.|...-+-+|+++|++++. +|-+.+.|+..+-|+.
T Consensus 19 ~~lG~wfhiVarlVy~~PemA~~------laeiiav~lVl~GgYR 57 (80)
T PRK13727 19 FSLGVWFHIVARLVYSKPWMAFF------LAELIAAILVLFGAYR 57 (80)
T ss_pred hhhhHHHHHHHHHHHcChHHHHH------HHHHHHHHHHhhhHHH
Confidence 45666665555578888887643 4444555555444444
No 110
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=20.42 E-value=1e+03 Score=25.17 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=29.0
Q ss_pred eecchhhHHHHHHHHHHHHHHHHHHHHhhc-------Cccchhhhhhhhhhhhhhchhh
Q 009832 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIG-------VKSTLIIMEVIPFLVLAVGVDN 71 (524)
Q Consensus 20 v~s~~~l~~~~~~~~~~a~~~~~Gl~~~~G-------~~~~~~~~~~~Pfl~l~igvd~ 71 (524)
.|.-||+....++...-..+..+.+..+-+ -..-......+-|++.|+|+.-
T Consensus 47 ~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~ 105 (403)
T PF03209_consen 47 WRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHA 105 (403)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhH
Confidence 355666665555555555555565554433 1212224566778888888743
No 111
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.28 E-value=5.8e+02 Score=22.18 Aligned_cols=90 Identities=26% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhhhh-hhhhhhc-------------hhhHHHHHHHHhhccCCCC---HHHH---------HHHHHhhhhhHHHHHHHHH
Q 009832 57 MEVIP-FLVLAVG-------------VDNMCILVNAVKRQPMELV---LETR---------ISNALVEVGPSITLASLSE 110 (524)
Q Consensus 57 ~~~~P-fl~l~ig-------------vd~~~~l~~~~~~~~~~~~---~~~~---------i~~~l~~~g~~i~~tslT~ 110 (524)
+.+.| |++-||| +|-.=.+.+.+++..++.. .+|. ++.++.-...+....+++.
T Consensus 1 lavaP~fLlsaig~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i 80 (130)
T PF11026_consen 1 LAVAPAFLLSAIGLLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVI 80 (130)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 111 FLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAF 147 (524)
Q Consensus 111 ~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~ 147 (524)
+..|..... +.+.-..-.+.-..++++-....+.|+
T Consensus 81 ~~lf~~~~~-~~~~~~~~~~lF~~am~~l~~sl~~fl 116 (130)
T PF11026_consen 81 LLLFLSALL-SIDLSWLVAILFVLAMLLLIASLVLFL 116 (130)
T ss_pred HHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHHH
No 112
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=20.16 E-value=8.6e+02 Score=24.26 Aligned_cols=56 Identities=9% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccCCCCHHHH
Q 009832 29 SGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETR 91 (524)
Q Consensus 29 ~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~~~~~~~~ 91 (524)
++++.+.++...+ .+-| .++. ...++- ++-++.+.-..-+.|.|.+.+++.|.++|
T Consensus 7 ~s~~pv~lG~ala----~~~~-~f~~-~~~ll~-~~~~~~~q~~~N~~NDy~D~~~G~D~~~~ 62 (284)
T TIGR00751 7 LAIAPIVAGTALA----AWLH-AFVW-LVALLA-LATAVLLQILSNYANDYGDGIKGSDTDDR 62 (284)
T ss_pred HHHHHHHHHHHHH----HHcC-CccH-HHHHHH-HHHHHHHHHHHHHHHhHHHHhcCCChhhc
Confidence 3444444444443 2335 7775 222222 22334445456677888777665555444
Done!