Query 009832
Match_columns 524
No_of_seqs 189 out of 1825
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 99.9 2.5E-20 8.5E-25 208.2 37.9 342 24-519 295-650 (741)
2 2v50_A Multidrug resistance pr 99.8 1.5E-20 5.3E-25 218.7 20.9 178 26-204 364-587 (1052)
3 4dx5_A Acriflavine resistance 99.8 4.6E-19 1.6E-23 206.5 31.0 162 26-190 364-564 (1057)
4 3ne5_A Cation efflux system pr 99.8 4.8E-19 1.6E-23 206.4 27.9 162 26-190 369-569 (1054)
5 3aqp_A Probable secdf protein- 99.3 1.3E-11 4.6E-16 137.8 16.0 130 23-153 590-722 (741)
6 4dx5_A Acriflavine resistance 99.2 1.1E-10 3.7E-15 136.1 15.6 128 26-154 897-1029(1057)
7 2v50_A Multidrug resistance pr 99.1 3.3E-10 1.1E-14 131.9 12.9 126 26-152 896-1025(1052)
8 3ne5_A Cation efflux system pr 99.1 3E-10 1E-14 132.3 11.9 129 25-154 902-1045(1054)
9 2kxh_B Peptide of FAR upstream 18.6 1.2E+02 0.0042 18.5 3.0 20 393-412 7-26 (31)
10 3udc_A Small-conductance mecha 13.7 3E+02 0.01 26.0 6.4 77 427-503 5-107 (285)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.89 E-value=2.5e-20 Score=208.21 Aligned_cols=342 Identities=15% Similarity=0.165 Sum_probs=228.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhH
Q 009832 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPS 102 (524)
Q Consensus 24 ~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~~ 102 (524)
++.++..++++.+++++++|++.++|.++|. .+...+.+.+|+++||.+|+.++|+++. ++.+.++++.+++++++.|
T Consensus 295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~ 373 (741)
T 3aqp_A 295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT 373 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4468888899999999999999999999997 6778889999999999999999998874 5678999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------ccccCcchhhhHH
Q 009832 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP-------------ILGLWGVKMVVVS 169 (524)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~-------------~l~~~~~k~~v~~ 169 (524)
++.|++||+++|+.+.+++.+++|.||+..++|++++++.++++.|+++..+.+ .+..-..|..+++
T Consensus 374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 453 (741)
T 3aqp_A 374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTA 453 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccchhhHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999843211 0000011333444
Q ss_pred HHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHhhhcCCCCcEEEEEecCCCCchhhhhhhhhcccccCcccHH
Q 009832 170 VFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLL 249 (524)
Q Consensus 170 ~~~~~~~~si~g~~~i~~~~~~~~~~p~~s~~~~~~~~~~~~f~~~~~v~iv~~~~d~~~~~~~~~~~~~~~~~~~~~l~ 249 (524)
+.++++++++++... .+++ .+ ..|.++.++.+..++ +. +.+ .+.
T Consensus 454 i~~vl~~~~~~~~~~--~~~~------~~-----------~~f~Gg~~i~v~~~~-~~-~~~---------------~l~ 497 (741)
T 3aqp_A 454 ATLLLAALAAGVVFA--KGFN------YS-----------IDFTGGTAYTLRAEP-NV-EVE---------------TLR 497 (741)
T ss_dssp HHHHHHHHHHHHHHH--HTCC------CC-----------HHHHCEEEEEEEECT-TC-CHH---------------HHH
T ss_pred HHHHHHHHHHHHHhh--ccCC------cc-----------eecCCCcEEEEEECC-CC-CHH---------------HHH
Confidence 445555566655421 1111 11 112233344444432 11 000 011
Q ss_pred HHHHHhccCCCCccccCCCCchHHHHHhhcCcCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCcccCCCcccccCC
Q 009832 250 NEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSD 329 (524)
Q Consensus 250 ~~i~~~~~~~~~~~~~~~~~~Wl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (524)
+.+++. ..+ ++ +.
T Consensus 498 ~~l~~~-g~~--------------------------------~~------~~---------------------------- 510 (741)
T 3aqp_A 498 RFLEEK-GFP--------------------------------GK------EA---------------------------- 510 (741)
T ss_dssp HHHHTT-TSC--------------------------------SS------SC----------------------------
T ss_pred HHHHhc-CCC--------------------------------CC------ch----------------------------
Confidence 111110 000 00 00
Q ss_pred CCCCCCChhHHHhhhHHHhhhCCCCcccCCCCCccccceeccCCCCCeeEeeeEEEeecccCChhHHHHHHHHHHHHHHh
Q 009832 330 LVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSR 409 (524)
Q Consensus 330 ~~~~~p~~~~f~~~l~~fl~~~p~~~c~~~~~~~y~~~~~~~~~~~~~I~~sr~~~~~~~~~~~~~~~~~~~~~r~i~~~ 409 (524)
..+. + | .+ .+.+ .++.+...+. +.++..+..+++|+ .
T Consensus 511 ------~v~~-------~-----------g------~~-----~~~~----~~~~v~~~~~-~~~~~~~l~~~l~~---~ 547 (741)
T 3aqp_A 511 ------VITQ-------V-----------Q------AP-----TAAY----REFLVKLPPL-SDERRLELERLFAS---E 547 (741)
T ss_dssp ------EEEE-------C----------------------------C----EEEEEEESCC-CHHHHHHHHHHHHH---H
T ss_pred ------hhhh-------c-----------c------CC-----CcCc----eEEEEEeCCC-CHHHHHHHHHHHHH---h
Confidence 0000 0 0 00 0000 0122222221 23333333333332 2
Q ss_pred hhhccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 009832 410 MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN 489 (524)
Q Consensus 410 ~~~~~~~~~~~~~~~f~f~eq~~~i~~~~~~~l~ia~~~vfvv~llli~~~~~a~l~~l~i~~i~v~v~G~M~l~gI~Ln 489 (524)
++. .+++....|. +....+.++.+..+.+++++++++..+.+ +++.++++++++....++.+|+|+++|+++|
T Consensus 548 ~~~-~~~~~~~vG~-----~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~ 620 (741)
T 3aqp_A 548 LKA-TVLASETVGP-----AIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIVAGMYSLLGLEFS 620 (741)
T ss_dssp SSS-CCCEEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCC-CceEEEEecH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 221 1223222333 44445667788888888888888776655 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhheechhHHHHHHHHhccc
Q 009832 490 AVSVVNLIMSIGIAVEFCVHIVHAFLVSNI 519 (524)
Q Consensus 490 ~iS~i~l~msIG~sVDfsaHi~~~f~~s~~ 519 (524)
..+++.+++.+|++|||++|+.++|....+
T Consensus 621 ~~~i~~~l~liGisvd~~I~l~~r~re~~~ 650 (741)
T 3aqp_A 621 IPTIAALLTIVGYSINDSIVVSDRIRENQK 650 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcceEEehHHHHHHHH
Confidence 999999999999999999999999977543
No 2
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.85 E-value=1.5e-20 Score=218.65 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSI 103 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i 103 (524)
.++..++++.+++++++|++.++|.++|. ++.+...+++|+++||++|++++++++. ++.++++++.++.++.+.|+
T Consensus 364 ~~li~~~~ip~s~~~~~~~l~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi 442 (1052)
T 2v50_A 364 ATLIPTIAVPVVLLGTFGVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGAL 442 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 57778888899999999999999999997 6777788899999999999999997753 57889999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------------------
Q 009832 104 TLASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI----------------------- 157 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~i---p~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~~----------------------- 157 (524)
++|++|+++||+.+.+++. +.++.||+..++|++++++.+++++|+++..+.+.
T Consensus 443 l~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1052)
T 2v50_A 443 VGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFLS 522 (1052)
T ss_dssp HHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccchhhhHHHHHHHH
Confidence 9999999999999999987 58999999999999999999999999987432110
Q ss_pred cccCc---------chhhhHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhH
Q 009832 158 LGLWG---------VKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGY 204 (524)
Q Consensus 158 l~~~~---------~k~~v~~~~~~~~~~si~g~~~i~~~~~~~~---------~~p~~s~~~~~ 204 (524)
+.+.+ +|..+++++++++++++++..+++.++.|.. -+|+++...+.
T Consensus 523 ~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t 587 (1052)
T 2v50_A 523 TTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERT 587 (1052)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHHH
Confidence 00000 1234455566666677788888877765532 36777655433
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.84 E-value=4.6e-19 Score=206.52 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-C-CCCHHHHHHHHHhhhhhHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-M-ELVLETRISNALVEVGPSI 103 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~-~~~~~~~i~~~l~~~g~~i 103 (524)
.++..++++.+++++++|++.++|.++|. ++.+...+++|+++||+++++++++++. + +.++++++.++.++.+.|+
T Consensus 364 ~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi 442 (1057)
T 4dx5_A 364 ATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGAL 442 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999997 6777778899999999999999998763 3 7899999999999999999
Q ss_pred HHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------------------
Q 009832 104 TLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI----------------------- 157 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~~~~----------------------- 157 (524)
++|++|+++||+...+++ .+.++.|++..++|++++++.+++++|+++..+.+.
T Consensus 443 ~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1057)
T 4dx5_A 443 VGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEK 522 (1057)
T ss_dssp HHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCSTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHHHHHHHHHH
Confidence 999999999999999988 677999999999999999999999999998432110
Q ss_pred -----------cccCcchhhhHHHHHHHHHHHHHhhhccccccc
Q 009832 158 -----------LGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (524)
Q Consensus 158 -----------l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~ 190 (524)
..+| |..+++++++++++++++..+++.++-
T Consensus 523 ~~~~y~~~l~~~lr~--~~~~~~~~~~~l~~~~~~~~~l~~~f~ 564 (1057)
T 4dx5_A 523 STHHYTDSVGGILRS--TGRYLVLYLIIVVGMAYLFVRLPSSFL 564 (1057)
T ss_dssp HHHHHHHHHHHHHHS--CTHHHHHHHHHHHHHHHHHHHSCBCSS
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 1112 344566666777778888888877653
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.83 E-value=4.8e-19 Score=206.35 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccC------------CCCHHHHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETRIS 93 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~------------~~~~~~~i~ 93 (524)
.++..++++.+++++++|++.++|.++|. ++.....+++|+++||++++.++++++.+ +.++.+++.
T Consensus 369 ~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~ 447 (1054)
T 3ne5_A 369 SALVAIISLPLGLCIAFIVMHFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVIT 447 (1054)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHHH
Confidence 46778888999999999999999999997 66777788999999999999999876543 567889999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------
Q 009832 94 NALVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH---------------- 154 (524)
Q Consensus 94 ~~l~~~g~~i~~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~---------------- 154 (524)
++.++.++|++.|++|+++||+...+++ .+.++.|++..+.|++++++.++++.|+++..+
T Consensus 448 ~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~ 527 (1054)
T 3ne5_A 448 DASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRF 527 (1054)
T ss_dssp TTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9999999999999999999999999887 788999999999999999999999999988321
Q ss_pred -----h---cccccCcchhhhHHHHHHHHHHHHHhhhccccccc
Q 009832 155 -----A---PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (524)
Q Consensus 155 -----~---~~l~~~~~k~~v~~~~~~~~~~si~g~~~i~~~~~ 190 (524)
. .+..+| +..+++++++++++++++..+++.++-
T Consensus 528 ~~~~y~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~l~~~f~ 569 (1054)
T 3ne5_A 528 LIRVYHPLLLKVLHW--PKTTLLVAALSVLTVLWPLNKVGGEFL 569 (1054)
T ss_dssp HHHHHHHHHHHHTSS--THHHHHHHHHHHHHTHHHHTTCCBCSS
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCceEC
Confidence 1 122233 344556666777788888888877653
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.32 E-value=1.3e-11 Score=137.78 Aligned_cols=130 Identities=12% Similarity=0.245 Sum_probs=117.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccC---CCCHHHHHHHHHhhh
Q 009832 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM---ELVLETRISNALVEV 99 (524)
Q Consensus 23 ~~~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~---~~~~~~~i~~~l~~~ 99 (524)
++..++..+++..+++++++|++.++|.+++. .+.+...+++|+++||++|+.++++++.+ +.+.+|++.+++++.
T Consensus 590 s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~ 668 (741)
T 3aqp_A 590 DWTFGVASILAVAHDVAIVAGMYSLLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQT 668 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45578888999999999999999999999997 55555566799999999999999988643 468999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009832 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (524)
Q Consensus 100 g~~i~~tslT~~~~F~~~~~s~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~ 153 (524)
+.|+++|++|+++||+.+.+++.+.+|.||+..++|++++.+.++++.|+++..
T Consensus 669 ~~~il~Tsltt~~g~~~L~~~g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~ 722 (741)
T 3aqp_A 669 LSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVVA 722 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998843
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.20 E-value=1.1e-10 Score=136.09 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSI 103 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~~i 103 (524)
.++..++++.++++.++|.+.++|.++|. .+.+...+++|+++||++++++++++. +++.+.++++.++.++.+.|+
T Consensus 897 ~~l~~l~~i~~~~~~~~~~l~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpi 975 (1057)
T 4dx5_A 897 IPFSVMLVVPLGVIGALLAATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPI 975 (1057)
T ss_dssp THHHHHTTHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHH
Confidence 56677888889999999999999999997 666777788999999999999999876 457889999999999999999
Q ss_pred HHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009832 104 TLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (524)
Q Consensus 104 ~~tslT~~~~F~~~~~s~---ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~ 154 (524)
++|++|+++||+.+.+++ .+.++.||+..+.|++++.+.++++.|+++...
T Consensus 976 l~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~ 1029 (1057)
T 4dx5_A 976 LMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVV 1029 (1057)
T ss_dssp HHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885 899999999999999999999999999988543
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.09 E-value=3.3e-10 Score=131.90 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhHHH
Q 009832 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSIT 104 (524)
Q Consensus 26 l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~~i~ 104 (524)
.++..++++.++++.++|.+.++|.++|. ...+...+++|+++||++|+++++++.+ ++.+.++++.++.++.+.||+
T Consensus 896 ~~l~il~~ip~~~~g~~~~~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil 974 (1052)
T 2v50_A 896 IPFSVMLVVPLGVIGALLATSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIV 974 (1052)
T ss_dssp TTHHHHTHHHHHHTTHHHHHHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHH
Confidence 34556677788888999999999999997 6666667889999999999999998765 467899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009832 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (524)
Q Consensus 105 ~tslT~~~~F~~~~~s~i---p~v~~f~~~~a~~v~~~~~~~lt~~pa~l~ 152 (524)
+|++|+++||+.+.+++. +..+.||+..+.|++++.+.+++++|+++.
T Consensus 975 ~t~~tt~~g~~pl~~~~~~g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~ 1025 (1052)
T 2v50_A 975 MTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYV 1025 (1052)
T ss_dssp HHHHHHHTTSHHHHTCCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCChhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887 889999999999999999999999999863
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.08 E-value=3e-10 Score=132.33 Aligned_cols=129 Identities=8% Similarity=-0.030 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhhhhhhhhhhchhhHHHHHHHHhhccC------------CCCHHHHH
Q 009832 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETRI 92 (524)
Q Consensus 25 ~l~~~~~~~~~~a~~~~~Gl~~~~G~~~~~~~~~~~Pfl~l~igvd~~~~l~~~~~~~~~------------~~~~~~~i 92 (524)
..++..++++.++++.++|.+.++|.++|. .+.+...+++|+++||++++++++++..+ +.+.++++
T Consensus 902 ~~~l~il~~ip~~~~g~~~~l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai 980 (1054)
T 3ne5_A 902 GEALLIISSVPFALVGGIWLLWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEAL 980 (1054)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHHH
Confidence 357778888899999999999999999997 67777778899999999999987766543 46778999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009832 93 SNALVEVGPSITLASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (524)
Q Consensus 93 ~~~l~~~g~~i~~tslT~~~~F~~~~~s---~ip~v~~f~~~~a~~v~~~~~~~lt~~pa~l~~~ 154 (524)
.++.++.+.|+++|++||++||+.+.++ ..+.++.||+..+.|++++.+.++++.|+++..+
T Consensus 981 ~~a~~~~~rpil~t~ltti~g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~ 1045 (1054)
T 3ne5_A 981 YHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLM 1045 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 4788999999999999999999999999988543
No 9
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=18.60 E-value=1.2e+02 Score=18.45 Aligned_cols=20 Identities=15% Similarity=0.498 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 009832 393 QGDYVNSLRAAREFSSRMSD 412 (524)
Q Consensus 393 ~~~~~~~~~~~r~i~~~~~~ 412 (524)
.+.+.++++.+|+|+.++..
T Consensus 7 ~daFadA~~RaRQIaAKig~ 26 (31)
T 2kxh_B 7 NDAFKDALQRARQIAAKIGG 26 (31)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999988754
No 10
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=13.73 E-value=3e+02 Score=25.98 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hhhhHHHHHHHHHHHHHHHHHHH
Q 009832 427 FFEQYLDIWRVALINIAVALGAIFIVCLLMT--------------------------SSLWSSAIILVVLVMIVIDLLGV 480 (524)
Q Consensus 427 f~eq~~~i~~~~~~~l~ia~~~vfvv~llli--------------------------~~~~~a~l~~l~i~~i~v~v~G~ 480 (524)
.+++............++.++.++++..+.. ......+--++-.+...++++..
T Consensus 5 i~~~l~~~~~~~~~~~~~~il~~lii~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~i~~~~~~~~ 84 (285)
T 3udc_A 5 IYHKLVEIYDIKAVKFLLDVLKILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKIDTLTSLTKNAVRYIIYFLAGASI 84 (285)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcccchHHHHHHHHhhhhhe
Q 009832 481 MAILGIQLNAVSVVNLIMSIGIA 503 (524)
Q Consensus 481 M~l~gI~Ln~iS~i~l~msIG~s 503 (524)
+..||+++.++-+...+.++|++
T Consensus 85 l~~~g~~~~~l~a~~g~~g~aig 107 (285)
T 3udc_A 85 LKLFNIDMTSLLAVAGIGSLAIG 107 (285)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH
Done!