BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009835
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 260 YPWLFNLSRNIQYLNL----GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM 315
YP +L+ N+ YLN G N+L G IP A + L +LY+T + G IP F ++
Sbjct: 66 YPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 316 CSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSL-KI 373
+L L YN LSG L I +L +L G+ +GN I+G +PD G FS L
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLP------NLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 374 LVLGENRLNGTI 385
+ + NRL G I
Sbjct: 179 MTISRNRLTGKI 190
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 18/186 (9%)
Query: 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSL-NRLCLPYN 326
+ + L+ +N+L G++P + + +L + N + G IP +G L + + N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 327 KLSGDLSEMIQNLSGG---CTMNSLEG--------------VCLEGNDITGPLPDLGGFS 369
+L+G + NL+ + N LEG + L N + L +G
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 370 SLKILVLGENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIPLGTQLQSFNASVYAGNPEL 429
+L L L NR+ GT+ + N+ G+IP G LQ F+ S YA N L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 430 CGLPLP 435
CG PLP
Sbjct: 305 CGSPLP 310
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 259 VYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSL 318
+ P L N S + L+L FN L G+IP + + LR L L N LEG IP+ + +L
Sbjct: 407 IPPTLSNCSELVS-LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 319 NRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLG 377
L L +N L+G++ + N CT +L + L N +TG +P +G +L IL L
Sbjct: 466 ETLILDFNDLTGEIPSGLSN----CT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 378 ENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIPLGTQLQS 417
N +G I N F G IP QS
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 261 PWLFNLSRN----IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMC 316
P L NL +N +Q L L N G IP L L+L+ N L G IP G +
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 317 SLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILV 375
L L L N L G++ + + + +LE + L+ ND+TG +P L ++L +
Sbjct: 440 KLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 376 LGENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIP 410
L NRL G I K NSF+G IP
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 280 LQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL 339
QG E + + +TS G F S+ L + YN LSG + + I ++
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 340 SGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKXXXXXXXXXXX 398
+N L NDI+G +PD +G L IL L N+L+G I +
Sbjct: 653 PYLFILN------LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 399 XXGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKCP 439
N+ +G IP Q ++F + + NP LCG PLP P
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
F+ + ++ +L++ +N L G IP+ M L L L N++ G IP G + LN L L
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371
NKL G + + + L TM L + L N+++GP+P++G F +
Sbjct: 685 SSNKLDGRIPQAMSAL----TM--LTEIDLSNNNLSGPIPEMGQFETF 726
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P+L + S +Q+L++ N L G A L+ L ++SN+ G IP + SL
Sbjct: 214 PFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 270
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG 367
L L NK +G++ + LSG C ++L G+ L GN G +P G
Sbjct: 271 LSLAENKFTGEIPDF---LSGAC--DTLTGLDLSGNHFYGAVPPFFG 312
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N+ +++L N L G IP+ + +L L L++N G IP G SL L L N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 329 SGDLSEMIQNLSGGCTMNSLEG 350
+G + + SG N + G
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAG 569
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 270 IQYLNLGFNSLQ--GSIPEAFQLMVSLRFLYLTSNELEGG--IPKFFGKMC-SLNRLCLP 324
+++LN+ N+L G + +L SL L L++N + G + C L L +
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 183
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384
NK+SGD+ C +LE + + N+ + +P LG S+L+ L + N+L+G
Sbjct: 184 GNKISGDVD------VSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 385 IDKXXXXXXXXXXXXXGRNSFTGKIP 410
+ N F G IP
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 259 VYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSL 318
+ P L N S + L+L FN L G+IP + + LR L L N LEG IP+ + +L
Sbjct: 410 IPPTLSNCSELVS-LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 319 NRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLG 377
L L +N L+G++ + N CT +L + L N +TG +P +G +L IL L
Sbjct: 469 ETLILDFNDLTGEIPSGLSN----CT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 378 ENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIPLGTQLQS 417
N +G I N F G IP QS
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 261 PWLFNLSRN----IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMC 316
P L NL +N +Q L L N G IP L L+L+ N L G IP G +
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 317 SLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILV 375
L L L N L G++ + + + +LE + L+ ND+TG +P L ++L +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 376 LGENRLNGTIDKXXXXXXXXXXXXXGRNSFTGKIP 410
L NRL G I K NSF+G IP
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 280 LQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL 339
QG E + + +TS G F S+ L + YN LSG + + I ++
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 340 SGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKXXXXXXXXXXX 398
+N L NDI+G +PD +G L IL L N+L+G I +
Sbjct: 656 PYLFILN------LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 399 XXGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKCP 439
N+ +G IP Q ++F + + NP LCG PLP P
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323
F+ + ++ +L++ +N L G IP+ M L L L N++ G IP G + LN L L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371
NKL G + + + L TM L + L N+++GP+P++G F +
Sbjct: 688 SSNKLDGRIPQAMSAL----TM--LTEIDLSNNNLSGPIPEMGQFETF 729
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P+L + S +Q+L++ N L G A L+ L ++SN+ G IP + SL
Sbjct: 217 PFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGG 367
L L NK +G++ + LSG C ++L G+ L GN G +P G
Sbjct: 274 LSLAENKFTGEIPDF---LSGAC--DTLTGLDLSGNHFYGAVPPFFG 315
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N+ +++L N L G IP+ + +L L L++N G IP G SL L L N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 329 SGDLSEMIQNLSGGCTMNSLEG 350
+G + + SG N + G
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAG 572
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 270 IQYLNLGFNSLQ--GSIPEAFQLMVSLRFLYLTSNELEGG--IPKFFGKMC-SLNRLCLP 324
+++LN+ N+L G + +L SL L L++N + G + C L L +
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Query: 325 YNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384
NK+SGD+ C +LE + + N+ + +P LG S+L+ L + N+L+G
Sbjct: 187 GNKISGDVD------VSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238
Query: 385 IDKXXXXXXXXXXXXXGRNSFTGKIP 410
+ N F G IP
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P +F+ + YL+LG+N LQ F + SL+ L L +N+L+ F K+ L
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 321 LCLPYNKLS 329
L L N+L
Sbjct: 186 LKLDNNQLK 194
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
N+ + + L+L N L +AF + LR LYL N+L+ F ++ +L L +
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 325 YNKLSG 330
NKL
Sbjct: 94 DNKLQA 99
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322
+F +N++ L + N LQ F +V+L L L N+L+ P+ F + L L
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 323 LPYNKLSGDLSEMIQNLSGGC--TMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGEN 379
L YN+L Q+L G + SL+ + L N + P + LK L L N
Sbjct: 140 LGYNEL--------QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 380 RL 381
+L
Sbjct: 192 QL 193
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P LF +QYL L N+LQ + F+ + +L L+L N + + F + SL+R
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGEN 379
L L N+++ ++L L + L N+++ P L +L+ L L +N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLG------RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P LF +QYL L N+LQ + F+ + +L L+L N + + F + SL+R
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGEN 379
L L N+++ ++L L + L N+++ P L +L+ L L +N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLG------RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P +F RN+ +L+L L+ P AF + SL+ L + SN+L+ F ++ SL +
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 321 LCLPYN 326
+ L N
Sbjct: 523 IWLHTN 528
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 263 LFNLSRNIQYLNLGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+FN +++ L + NS Q + +P+ F + +L FL L+ +LE P F + SL L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 322 CLPYNKL 328
+ N+L
Sbjct: 500 NMASNQL 506
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+F+ N++ L L N LQ S+P+ F + +L +LYL N+L+ F K+ +L RL
Sbjct: 104 VFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRL 162
Query: 322 CLPYNKLSG 330
L N+L
Sbjct: 163 DLDNNQLQS 171
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N++YL LG N L A + + +L +L LT N+L+ F K+ +L L L N+L
Sbjct: 64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 329 SG 330
Sbjct: 122 QS 123
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N+ YL L N LQ F + +L+ L L N+L+ F K+ +L L L +N+L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 329 SGDLSEMIQNLSGGC--TMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGT 384
Q+L G + +L + L+ N + LP+ + LK L L +N+L
Sbjct: 146 --------QSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 385 ID 386
D
Sbjct: 197 PD 198
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322
+F+ N+ YL L N LQ F + +L L L +N+L+ F K+ L +L
Sbjct: 128 VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLS 187
Query: 323 LPYNKLSG 330
L N+L
Sbjct: 188 LNDNQLKS 195
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331
YL+L NSL+ F + SL LYL N+L+ F K+ SL L L N+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--- 88
Query: 332 LSEMIQNLSGGC--TMNSLEGVCLEGNDITGPLPD--LGGFSSLKILVLGENRLNGTID 386
Q+L G + L+ + L N + LPD + LK L L +N+L D
Sbjct: 89 -----QSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPD 141
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322
+FN ++ YLNL N LQ F + L+ L L +N+L+ F K+ L L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 323 LPYNKL 328
L N+L
Sbjct: 131 LYQNQL 136
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322
+F+ ++ L LG N LQ F + SL +L L++N+L+ F K+ L L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 323 LPYNKL 328
L N+L
Sbjct: 107 LNTNQL 112
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N++YL LG N L A + + +L +L LT N+L+ F K+ +L L L N+L
Sbjct: 64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 329 SG 330
Sbjct: 122 QS 123
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322
+F+ N+ YLNL N LQ F + +L L L+ N+L+ F K+ L L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 323 LPYNKL 328
L N+L
Sbjct: 188 LYQNQL 193
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+F+ N++ L L N LQ S+P+ F + +L +L L N+L+ F K+ +L L
Sbjct: 104 VFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 322 CLPYNKLSG 330
L YN+L
Sbjct: 163 DLSYNQLQS 171
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N+ YL L N LQ F + +L+ L L N+L+ F K+ +L L L +N+L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 329 SG 330
Sbjct: 146 QS 147
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNR 320
+ F + IQ L +GFN+++ P FQ + L L L N+L +P+ F L
Sbjct: 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTT 151
Query: 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359
L + N L E I++ + T SL+ + L N +T
Sbjct: 152 LSMSNNNL-----ERIEDDTFQATT-SLQNLQLSSNRLT 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+ F + IQ L +GFN+++ P FQ + L L L N+L F L L
Sbjct: 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146
Query: 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360
+ N L E I++ + T SL+ + L N +T
Sbjct: 147 SMSNNNL-----ERIEDDTFQAT-TSLQNLQLSSNRLTH 179
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N +YLNL NS+Q + F+ + L L L+ N + F + SLN L L N+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 329 SGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGE 378
+ ++ + LS L + L N I P SL+ L LGE
Sbjct: 96 TTVPTQAFEYLS------KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 286 EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345
+ F+ + L+ LYL N L P F + +L L L N+L+ LS
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--------LSHNDLP 525
Query: 346 NSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRL 381
+LE + + N + P PD+ F SL +L + N+
Sbjct: 526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKF 559
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328
N +YLNL NS+Q + F+ + L L L+ N + F + SLN L L N+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 329 SGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG-PLPDLGGFSSLKILVLGE 378
+ ++ + LS L + L N I P SL+ L LGE
Sbjct: 96 TTVPTQAFEYLS------KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
NL I + L N+++ P AF LR + L++N++ P F + SLN L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 325 YNKLS 329
NK++
Sbjct: 89 GNKIT 93
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324
NL I + L N+++ P AF LR + L++N++ P F + SLN L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 325 YNKLS 329
NK++
Sbjct: 89 GNKIT 93
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 261 PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320
P LF +QYL L N+LQ F+ + +L L+L N + F + SL+R
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 321 LCLPYNKLS 329
L L N ++
Sbjct: 181 LLLHQNHVA 189
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 263 LFNLSRNIQYLNLGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+FN +++ L + NS Q + +P+ F + +L FL L+ +LE P F + SL L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI-TGPLPDLGGF-SSLKILVLGEN 379
+ +N + C +NSL+ + N I T +L F SSL L L +N
Sbjct: 524 NMSHNNFFS-----LDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 380 RLNGTID 386
T +
Sbjct: 578 DFACTCE 584
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 259 VYPWLFNLSRNIQYLNLGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317
+ +FN +++ L + NS Q + +P+ F + +L FL L+ +LE P F + S
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Query: 318 LNRLCLPYN 326
L L + +N
Sbjct: 201 LQVLNMSHN 209
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 263 LFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+F+ + L+L N +Q S+P+ F + L LYL N+L+ F K+ L L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Query: 322 CLPYNKL 328
L N+L
Sbjct: 106 ALDTNQL 112
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNK 327
N Q L L N + P F +++L+ LYL SN+L G +P F + L L L N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 328 LS 329
L+
Sbjct: 100 LT 101
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 263 LFNLSRNIQYLNLGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321
+FN +++ L + NS Q + +P+ F + +L FL L+ +LE P F + SL L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI-TGPLPDLGGF-SSLKILVLGEN 379
+ +N + C +NSL+ + N I T +L F SSL L L +N
Sbjct: 500 NMSHNNFFS-----LDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 380 RLNGTID 386
T +
Sbjct: 554 DFACTCE 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,886,255
Number of Sequences: 62578
Number of extensions: 529512
Number of successful extensions: 964
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 120
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)