Query 009835
Match_columns 524
No_of_seqs 617 out of 5553
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 17:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.8E-44 1.3E-48 404.0 36.8 284 37-330 27-370 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.7E-33 1E-37 315.2 24.6 297 97-410 75-373 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.7E-34 1.9E-38 277.3 4.6 326 83-431 125-454 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-32 2.4E-37 269.6 6.8 324 84-429 79-429 (873)
5 KOG0444 Cytoskeletal regulator 100.0 5.8E-30 1.3E-34 252.2 -1.1 308 106-435 46-381 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.9E-29 4E-34 248.7 -3.0 302 83-412 7-311 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.8E-26 3.8E-31 217.2 -4.8 282 103-406 194-541 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 5.4E-22 1.2E-26 210.7 17.3 260 86-411 204-463 (788)
9 KOG0618 Serine/threonine phosp 99.9 2.3E-24 4.9E-29 222.2 -2.6 224 189-428 241-488 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 1.3E-24 2.9E-29 204.6 -7.1 251 107-382 60-310 (565)
11 PLN03210 Resistant to P. syrin 99.9 2E-20 4.3E-25 213.1 24.2 102 292-403 778-879 (1153)
12 KOG4237 Extracellular matrix p 99.9 4.4E-23 9.6E-28 194.1 -0.9 298 117-427 69-380 (498)
13 PRK15370 E3 ubiquitin-protein 99.8 2.8E-20 6E-25 198.9 18.8 323 34-406 58-428 (754)
14 PLN03210 Resistant to P. syrin 99.8 7.9E-20 1.7E-24 208.3 22.1 287 84-406 590-906 (1153)
15 KOG0618 Serine/threonine phosp 99.8 8.8E-23 1.9E-27 210.6 -2.1 299 84-406 46-420 (1081)
16 KOG4237 Extracellular matrix p 99.8 3.5E-22 7.5E-27 188.2 -0.8 132 83-226 67-199 (498)
17 PRK15387 E3 ubiquitin-protein 99.8 1.1E-19 2.4E-24 193.1 16.4 258 115-430 201-459 (788)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 193.6 14.2 255 73-382 170-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 6.5E-20 1.4E-24 181.6 6.9 282 120-405 3-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.2E-19 6.9E-24 176.7 2.0 276 102-381 9-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.6E-19 5.6E-24 150.3 -3.6 181 236-429 28-212 (264)
22 PLN03150 hypothetical protein; 99.6 2.7E-14 5.8E-19 152.5 13.8 151 34-200 367-526 (623)
23 KOG0617 Ras suppressor protein 99.6 1.5E-16 3.2E-21 133.9 -3.3 160 186-363 30-190 (264)
24 PLN03150 hypothetical protein; 99.5 2.7E-14 5.8E-19 152.5 11.6 117 317-439 419-538 (623)
25 KOG3207 Beta-tubulin folding c 99.4 3.9E-14 8.4E-19 136.0 0.6 219 161-382 118-339 (505)
26 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 136.9 -1.6 195 187-403 73-270 (722)
27 KOG1909 Ran GTPase-activating 99.3 6.2E-13 1.3E-17 124.6 1.6 256 107-405 22-310 (382)
28 COG4886 Leucine-rich repeat (L 99.2 1.7E-11 3.8E-16 125.0 8.3 197 119-363 97-294 (394)
29 PF14580 LRR_9: Leucine-rich r 99.2 6E-12 1.3E-16 110.8 4.0 131 112-249 16-147 (175)
30 COG4886 Leucine-rich repeat (L 99.2 2.5E-11 5.3E-16 123.9 8.9 197 168-410 97-294 (394)
31 KOG0532 Leucine-rich repeat (L 99.2 8.6E-13 1.9E-17 130.7 -2.1 177 212-407 72-248 (722)
32 KOG3207 Beta-tubulin folding c 99.2 1.8E-12 3.9E-17 124.7 0.1 213 138-360 119-340 (505)
33 KOG1909 Ran GTPase-activating 99.2 4.6E-12 9.9E-17 118.8 2.1 217 81-331 28-285 (382)
34 KOG1259 Nischarin, modulator o 99.2 6.8E-12 1.5E-16 115.1 1.8 130 269-409 285-415 (490)
35 KOG1259 Nischarin, modulator o 99.2 1.7E-11 3.8E-16 112.5 3.7 232 84-332 183-415 (490)
36 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-11 5.6E-16 106.7 4.4 128 84-225 20-150 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 4.9E-10 1.1E-14 122.6 6.7 105 116-225 546-652 (889)
38 KOG0531 Protein phosphatase 1, 99.0 6.4E-11 1.4E-15 121.2 -1.2 129 113-254 70-198 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 2.6E-09 5.6E-14 117.0 6.2 284 111-408 519-809 (889)
40 KOG0531 Protein phosphatase 1, 98.9 5.3E-10 1.2E-14 114.4 0.8 203 107-329 87-290 (414)
41 KOG2120 SCF ubiquitin ligase, 98.8 1.3E-10 2.8E-15 106.8 -3.6 111 165-278 186-296 (419)
42 KOG2120 SCF ubiquitin ligase, 98.8 4.3E-11 9.3E-16 109.9 -6.9 183 141-327 186-374 (419)
43 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.9E-14 76.8 3.3 60 346-405 1-61 (61)
44 PF13855 LRR_8: Leucine rich r 98.8 6.4E-09 1.4E-13 75.2 3.5 60 269-328 2-61 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.7 1.1E-08 2.4E-13 93.1 4.2 172 185-359 88-285 (388)
46 KOG2982 Uncharacterized conser 98.7 3.4E-09 7.3E-14 97.6 0.6 113 164-280 45-158 (418)
47 KOG1859 Leucine-rich repeat pr 98.6 1.4E-09 3E-14 111.1 -4.1 58 269-329 165-222 (1096)
48 PF08263 LRRNT_2: Leucine rich 98.6 6.9E-08 1.5E-12 64.0 4.5 41 38-79 2-43 (43)
49 KOG1859 Leucine-rich repeat pr 98.5 2.7E-09 5.8E-14 109.1 -5.6 176 185-382 105-292 (1096)
50 KOG2982 Uncharacterized conser 98.4 4.4E-08 9.5E-13 90.4 -0.1 87 113-199 69-156 (418)
51 KOG4341 F-box protein containi 98.3 2.3E-08 4.9E-13 96.4 -4.9 111 291-405 319-438 (483)
52 KOG4579 Leucine-rich repeat (L 98.3 8.4E-08 1.8E-12 78.5 -1.9 131 270-410 29-163 (177)
53 KOG3665 ZYG-1-like serine/thre 98.2 2.8E-07 6.1E-12 98.7 0.6 155 115-274 122-281 (699)
54 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.8E-11 75.1 4.6 109 114-225 41-150 (233)
55 COG5238 RNA1 Ran GTPase-activa 98.1 2.9E-06 6.4E-11 77.6 5.0 220 160-382 26-285 (388)
56 KOG4579 Leucine-rich repeat (L 98.1 2.6E-07 5.7E-12 75.7 -2.1 89 242-334 53-141 (177)
57 KOG1644 U2-associated snRNP A' 98.1 5.4E-06 1.2E-10 72.7 5.7 58 269-328 43-100 (233)
58 KOG3665 ZYG-1-like serine/thre 98.0 2.2E-06 4.8E-11 91.9 2.2 141 83-232 122-267 (699)
59 KOG4341 F-box protein containi 98.0 2.8E-07 6E-12 89.1 -4.2 267 111-381 160-438 (483)
60 PRK15386 type III secretion pr 97.9 5.3E-05 1.1E-09 75.3 10.1 141 110-279 47-188 (426)
61 KOG2739 Leucine-rich acidic nu 97.9 4.9E-06 1.1E-10 76.1 2.0 93 107-202 35-129 (260)
62 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.8E-10 52.5 3.9 36 293-329 2-37 (44)
63 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 52.8 3.3 36 116-153 2-37 (44)
64 KOG2739 Leucine-rich acidic nu 97.7 1.4E-05 3.1E-10 73.1 2.4 112 134-248 37-149 (260)
65 KOG2123 Uncharacterized conser 97.6 1.9E-06 4E-11 79.1 -5.2 103 114-221 18-123 (388)
66 PRK15386 type III secretion pr 97.6 0.00018 3.9E-09 71.6 8.2 137 210-380 47-188 (426)
67 PF13306 LRR_5: Leucine rich r 96.9 0.0015 3.3E-08 54.8 5.4 55 269-325 13-67 (129)
68 KOG1947 Leucine rich repeat pr 96.9 0.00022 4.8E-09 74.7 -0.2 176 139-328 187-374 (482)
69 KOG2123 Uncharacterized conser 96.9 5.8E-05 1.2E-09 69.6 -4.0 104 139-248 18-123 (388)
70 KOG1947 Leucine rich repeat pr 96.7 0.00037 8E-09 73.0 -0.2 179 162-359 186-375 (482)
71 PF13306 LRR_5: Leucine rich r 96.5 0.0076 1.6E-07 50.5 6.4 106 110-224 7-112 (129)
72 KOG4308 LRR-containing protein 96.4 3.7E-05 8E-10 79.2 -10.0 189 116-306 88-304 (478)
73 KOG4308 LRR-containing protein 94.9 0.00056 1.2E-08 70.5 -8.2 41 164-204 87-130 (478)
74 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 32.5 0.6 18 371-389 2-19 (22)
75 PF00560 LRR_1: Leucine Rich R 94.5 0.021 4.6E-07 31.4 1.2 18 294-312 2-19 (22)
76 PF13504 LRR_7: Leucine rich r 91.0 0.15 3.3E-06 25.9 1.4 10 371-380 3-12 (17)
77 PF04478 Mid2: Mid2 like cell 90.5 0.22 4.7E-06 42.0 2.6 53 467-519 49-101 (154)
78 PF13516 LRR_6: Leucine Rich r 89.0 0.19 4.2E-06 28.1 0.9 19 316-334 2-20 (24)
79 KOG3864 Uncharacterized conser 88.0 0.2 4.3E-06 44.7 0.7 70 269-338 102-174 (221)
80 smart00369 LRR_TYP Leucine-ric 87.3 0.58 1.3E-05 26.6 2.2 14 317-330 3-16 (26)
81 smart00370 LRR Leucine-rich re 87.3 0.58 1.3E-05 26.6 2.2 14 317-330 3-16 (26)
82 PF02439 Adeno_E3_CR2: Adenovi 87.0 0.59 1.3E-05 29.2 2.1 18 468-485 8-25 (38)
83 KOG0473 Leucine-rich repeat pr 87.0 0.042 9.1E-07 49.9 -4.1 83 242-329 42-124 (326)
84 PF13516 LRR_6: Leucine Rich r 86.9 0.19 4.2E-06 28.1 -0.0 16 369-384 2-17 (24)
85 KOG3864 Uncharacterized conser 86.8 0.081 1.7E-06 47.1 -2.4 35 190-226 102-136 (221)
86 KOG4242 Predicted myosin-I-bin 86.2 3.4 7.3E-05 41.8 8.1 62 141-202 215-281 (553)
87 smart00370 LRR Leucine-rich re 85.9 0.75 1.6E-05 26.2 2.2 14 369-382 2-15 (26)
88 smart00369 LRR_TYP Leucine-ric 85.9 0.75 1.6E-05 26.2 2.2 14 369-382 2-15 (26)
89 PF08693 SKG6: Transmembrane a 85.2 0.43 9.4E-06 30.3 0.9 23 467-489 12-34 (40)
90 KOG0473 Leucine-rich repeat pr 82.8 0.055 1.2E-06 49.1 -5.3 35 348-382 90-124 (326)
91 PF08374 Protocadherin: Protoc 80.3 0.62 1.3E-05 41.6 0.4 29 465-493 36-64 (221)
92 KOG4242 Predicted myosin-I-bin 76.5 8.7 0.00019 39.0 7.0 21 140-160 165-185 (553)
93 PTZ00382 Variant-specific surf 74.4 1.1 2.4E-05 35.2 0.2 25 467-491 66-90 (96)
94 PF01102 Glycophorin_A: Glycop 73.8 1.8 4E-05 35.5 1.4 20 468-487 65-84 (122)
95 smart00368 LRR_RI Leucine rich 73.5 3.6 7.8E-05 23.9 2.2 21 316-336 2-22 (28)
96 smart00365 LRR_SD22 Leucine-ri 72.8 3 6.6E-05 23.9 1.7 14 164-177 2-15 (26)
97 KOG3763 mRNA export factor TAP 69.5 3.1 6.8E-05 43.0 2.2 36 164-199 218-254 (585)
98 PF15102 TMEM154: TMEM154 prot 68.7 3.9 8.4E-05 34.5 2.2 8 488-495 80-87 (146)
99 KOG3763 mRNA export factor TAP 67.3 2.6 5.6E-05 43.5 1.1 39 187-225 216-254 (585)
100 TIGR00864 PCC polycystin catio 65.7 3.7 8.1E-05 50.6 2.2 38 375-412 1-38 (2740)
101 smart00364 LRR_BAC Leucine-ric 65.7 4.1 9E-05 23.3 1.3 13 370-382 3-15 (26)
102 PF01299 Lamp: Lysosome-associ 64.5 4 8.6E-05 39.9 1.8 6 396-401 231-236 (306)
103 PF02439 Adeno_E3_CR2: Adenovi 61.6 5.8 0.00013 24.9 1.5 22 468-489 4-25 (38)
104 PF14575 EphA2_TM: Ephrin type 59.4 7.8 0.00017 28.9 2.2 23 469-491 3-25 (75)
105 PF01034 Syndecan: Syndecan do 56.8 3.4 7.3E-05 29.3 -0.1 17 468-484 14-30 (64)
106 PF12191 stn_TNFRSF12A: Tumour 56.1 4 8.8E-05 33.2 0.2 25 474-498 86-110 (129)
107 PRK00523 hypothetical protein; 50.1 12 0.00027 27.3 1.8 29 470-498 6-34 (72)
108 PF07204 Orthoreo_P10: Orthore 49.9 8.3 0.00018 29.6 1.0 30 465-494 40-69 (98)
109 PRK01844 hypothetical protein; 48.3 13 0.00029 27.1 1.8 26 472-497 7-32 (72)
110 smart00367 LRR_CC Leucine-rich 45.5 20 0.00043 20.2 1.9 12 316-327 2-13 (26)
111 PF03302 VSP: Giardia variant- 44.1 11 0.00024 38.3 1.2 27 465-491 365-391 (397)
112 PF04478 Mid2: Mid2 like cell 42.4 13 0.00028 31.7 1.1 30 463-492 49-78 (154)
113 PF05454 DAG1: Dystroglycan (D 42.1 8.4 0.00018 36.9 0.0 21 470-490 151-171 (290)
114 PF14991 MLANA: Protein melan- 41.3 5.6 0.00012 31.7 -1.1 21 481-503 39-59 (118)
115 PF05545 FixQ: Cbb3-type cytoc 39.6 37 0.0008 22.8 2.8 9 485-493 26-34 (49)
116 PF13120 DUF3974: Domain of un 38.4 20 0.00043 27.4 1.5 14 508-521 39-52 (126)
117 PF05808 Podoplanin: Podoplani 36.8 11 0.00025 32.2 0.0 33 465-497 127-160 (162)
118 PF14610 DUF4448: Protein of u 35.4 24 0.00052 31.7 1.9 27 467-493 159-185 (189)
119 PF01102 Glycophorin_A: Glycop 35.3 26 0.00056 28.9 1.8 29 464-493 65-93 (122)
120 PF15102 TMEM154: TMEM154 prot 33.9 30 0.00064 29.3 2.0 25 472-496 61-85 (146)
121 PF04971 Lysis_S: Lysis protei 33.4 39 0.00085 24.4 2.2 26 467-492 33-58 (68)
122 PF14991 MLANA: Protein melan- 31.7 16 0.00034 29.3 0.0 10 506-515 50-59 (118)
123 PF13908 Shisa: Wnt and FGF in 31.4 31 0.00067 30.6 1.8 15 467-481 79-93 (179)
124 PF12877 DUF3827: Domain of un 28.4 40 0.00086 35.8 2.2 24 463-486 266-289 (684)
125 PF08114 PMP1_2: ATPase proteo 26.4 34 0.00074 21.8 0.8 6 489-494 29-34 (43)
126 PF11770 GAPT: GRB2-binding ad 25.8 33 0.00072 29.0 0.9 28 478-505 21-51 (158)
127 PF15179 Myc_target_1: Myc tar 25.7 50 0.0011 29.0 2.0 27 465-491 22-48 (197)
128 PTZ00382 Variant-specific surf 24.8 43 0.00094 26.3 1.4 27 465-492 68-94 (96)
129 PF02480 Herpes_gE: Alphaherpe 23.6 27 0.00058 36.0 0.0 12 58-71 9-20 (439)
130 PF08374 Protocadherin: Protoc 23.3 1.2E+02 0.0027 27.5 4.1 35 463-498 38-73 (221)
131 PF03229 Alpha_GJ: Alphavirus 21.3 1.7E+02 0.0036 23.7 3.9 26 468-493 84-110 (126)
132 PTZ00208 65 kDa invariant surf 21.2 59 0.0013 32.4 1.8 28 467-494 387-414 (436)
133 PF06809 NPDC1: Neural prolife 21.1 1.7E+02 0.0036 28.4 4.6 11 483-493 215-225 (341)
134 COG3763 Uncharacterized protei 21.0 76 0.0017 23.1 1.9 7 483-489 18-24 (71)
135 PF12768 Rax2: Cortical protei 20.9 65 0.0014 31.0 2.0 12 467-478 229-240 (281)
136 PF10661 EssA: WXG100 protein 20.4 59 0.0013 27.8 1.5 6 487-492 138-143 (145)
137 PF06365 CD34_antigen: CD34/Po 20.3 1.2E+02 0.0026 27.5 3.4 13 479-491 115-127 (202)
138 PF14654 Epiglycanin_C: Mucin, 20.3 68 0.0015 24.9 1.6 24 468-491 20-43 (106)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-44 Score=404.04 Aligned_cols=284 Identities=35% Similarity=0.508 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccceEeCCCCCcEEEEEcCCCCCC----------------CCCC
Q 009835 37 IDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDE----------------NSRG 100 (524)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~----------------~~~~ 100 (524)
.++|+.||++||+++.+|.+.+.+|+ .+.+||.|.||+|++ .++|+.|+|+++.+. ++.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 45799999999999988877889997 577899999999974 468999999886431 3455
Q ss_pred CcceeecCcccc-CCCCCCEEEccCCCCCCC---------------------CCccccCCCCCCCEEEccCCCCCccCCc
Q 009835 101 TVLKGTISPALL-KLHDLRHLDLSNNHFGGS---------------------PLPEFIGSLSRLRYLNLSCGTSLLKVPR 158 (524)
Q Consensus 101 ~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~---------------------~~p~~l~~l~~L~~L~L~~n~~~~~~p~ 158 (524)
|.+.+.+|..+. .+++|++|+|++|.+++. .+|..++.+++|++|+|++|.+.+.+|.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 566666665544 555555555555544332 1344455555555555555555555555
Q ss_pred cccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc----
Q 009835 159 PFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS---- 234 (524)
Q Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---- 234 (524)
.++++++|++|++++|.+.... +..+.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..|..
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEI--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcC--ChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 5555555555555555544221 233445555555555555544321 234444445555555544444333320
Q ss_pred ------------------hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccce
Q 009835 235 ------------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296 (524)
Q Consensus 235 ------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 296 (524)
..+... ++|++|++++|.+.+ .+|..+.... +|+.|++++|.+++.+|..+..+++|+.
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~-~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSG-EIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeecc-CCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 022222 555555555555544 3444443333 6666777777666666667777777777
Q ss_pred EeecCcccccccchhhcCCCCCCEEEccCCCCCC
Q 009835 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 297 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
|++++|.+.+.+|..++.+++|+.|++++|.+++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 7777777776666655555555555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-33 Score=315.22 Aligned_cols=297 Identities=33% Similarity=0.440 Sum_probs=219.3
Q ss_pred CCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCcccc-CCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCC
Q 009835 97 NSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFI-GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSN 175 (524)
Q Consensus 97 ~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (524)
++.++.+.+.++..+..+++|++|+|++|.+.+. +|..+ ..+++|++|+|++|.+++.+|. +.+++|++|+|++|.
T Consensus 75 ~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~ 151 (968)
T PLN00113 75 DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM 151 (968)
T ss_pred EecCCCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc
Confidence 5667888999999999999999999999999876 77654 4899999999999998887774 457888888888888
Q ss_pred CCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCC
Q 009835 176 LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLP 255 (524)
Q Consensus 176 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 255 (524)
+... .+..+.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..|. .+..+ ++|++|++++|.+.
T Consensus 152 ~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l-~~L~~L~L~~n~l~ 225 (968)
T PLN00113 152 LSGE-IPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPR--ELGQM-KSLKWIYLGYNNLS 225 (968)
T ss_pred cccc-CChHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCCh--HHcCc-CCccEEECcCCccC
Confidence 7632 2355778888888888888776553 35677888888888888887777664 44444 77888888888776
Q ss_pred CCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHH
Q 009835 256 SSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEM 335 (524)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 335 (524)
+ .+|..+.... +|++|++++|.+++.+|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|..
T Consensus 226 ~-~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 226 G-EIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred C-cCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 5 6666665555 7778888777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 336 IQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 336 ~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+..++ +|+.|++++|.+++..|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 304 ~~~l~------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 304 VIQLQ------NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred HcCCC------CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 66554 666666666666665554 5666666666666666666666666666666666666666665555
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=8.7e-34 Score=277.30 Aligned_cols=326 Identities=26% Similarity=0.349 Sum_probs=243.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
+|++.|+|.+| .++..-.+++..++.||.||||.|.|+.. --..|..-.++++|+|++|.|+...-..|..
T Consensus 125 ghl~~L~L~~N--------~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 125 GHLEKLDLRHN--------LISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred cceeEEeeecc--------ccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCCceEEeeccccccccccccccc
Confidence 56677777663 45544555666777777777777777664 2344555566777777777777766667777
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+.+|.+|.|+.|+++.++. ..|.++++|+.|+|..|.+.... .-.|.++++|+.|.+..|.+...... .++.+ .
T Consensus 196 lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive--~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l-~ 269 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVE--GLTFQGLPSLQNLKLQRNDISKLDDG--AFYGL-E 269 (873)
T ss_pred cchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeeh--hhhhcCchhhhhhhhhhcCcccccCc--ceeee-c
Confidence 7777777777777776655 55677777777777777766553 23567777777777777777665553 33444 8
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
++++|+|..|++.. .-..+++.+. .|+.|++|+|.|...-++.+...++|+.|+|+.|+++...+.+|..+..|++|+
T Consensus 270 kme~l~L~~N~l~~-vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 270 KMEHLNLETNRLQA-VNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ccceeecccchhhh-hhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 88888888888854 3445666666 888888888888877778888888888888888888877788888888888888
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC----CCCCCCCcEEEccCCcCccccchhhhcCCCCCEE
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD----LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESL 398 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 398 (524)
|++|.++......|..+. +|++|||++|.++..+.+ |.++++|+.|++.+|++..+....|.+++.|+.|
T Consensus 348 Ls~Nsi~~l~e~af~~ls------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLS------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred ccccchHHHHhhHHHHhh------hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 888888877777777766 899999999999886653 7889999999999999997777889999999999
Q ss_pred ECcCCcCeeeCCCCCcccccccccccCCCCCCC
Q 009835 399 SLGRNSFTGKIPLGTQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 399 ~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~ 431 (524)
||.+|.+...-|....-..+++..+..-..+|+
T Consensus 422 dL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPMELKELVMNSSSFLCD 454 (873)
T ss_pred cCCCCcceeecccccccchhhhhhhcccceEEe
Confidence 999999987777654444566666666667776
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-32 Score=269.59 Aligned_cols=324 Identities=23% Similarity=0.215 Sum_probs=210.5
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.+..||+++| .+...-+..|.++++|+.+++.+|.++. +|...+...+|+.|+|.+|.|...-.+++..+
T Consensus 79 ~t~~LdlsnN--------kl~~id~~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 79 QTQTLDLSNN--------KLSHIDFEFFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred ceeeeecccc--------ccccCcHHHHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhH
Confidence 4667888885 4555555556666666666666666655 55555555556666666555555555555555
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc---------
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS--------- 234 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------- 234 (524)
+.|++|||+.|.|+.++. ..|..-.++++|+|++|.++... ...|..+.+|..|.|+.|+++..++..
T Consensus 149 ~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 555555555555554443 22344444555555555554443 134444444444444444444444310
Q ss_pred ------------hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCc
Q 009835 235 ------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN 302 (524)
Q Consensus 235 ------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 302 (524)
...|+.+++|+.|.+..|++ ..+.+..|-.+.++++|+|..|+++..-..++.++++|+.|++|.|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I--~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI--SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCc--ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 01222335555555555555 2334444444557888888888887666677788888888888888
Q ss_pred ccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcC
Q 009835 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRL 381 (524)
Q Consensus 303 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l 381 (524)
.|....++++.-+++|++|+|++|+|+...+..|..+. .|++|+|++|.++..... |..+.+|++|||++|.+
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHH------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 88888888888888888888888888888888888876 888888988888866554 78888899999999988
Q ss_pred ccccc---hhhhcCCCCCEEECcCCcCeeeCCCC--CcccccccccccCCCCC
Q 009835 382 NGTID---KSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNASVYAGNPEL 429 (524)
Q Consensus 382 ~~~~p---~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~gn~~~ 429 (524)
+..+. ..|.++++|+.|++.+|++. .||.. ..+..++...+.+|+..
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence 76654 34777889999999999887 55542 34666777778777753
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=5.8e-30 Score=252.23 Aligned_cols=308 Identities=25% Similarity=0.347 Sum_probs=196.2
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCC-ccCCccccCCCCCcEEEccCCCCCCCCCchh
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSL-LKVPRPFQYLSGLVYLHLENSNLFSLGSLQW 184 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 184 (524)
.+|+.++.+.+|++|.+++|++.. +...++.++.|+.+++..|++. .-+|..+-++..|.+|||++|++...+ ..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP--~~ 121 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP--TN 121 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc--hh
Confidence 566666666677777776666654 4455556666666666665552 234555556666666666666665333 34
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC----------
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL---------- 254 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l---------- 254 (524)
+...+++-.|+||+|++..++. ..+.++..|-.|+|++|.+...+| .+..+ ..|++|+|++|.+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~LPP---Q~RRL-~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEMLPP---QIRRL-SMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhhcCH---HHHHH-hhhhhhhcCCChhhHHHHhcCcc
Confidence 5555566666666666655542 344555555555555555555544 23333 4444444444433
Q ss_pred --------------CCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCE
Q 009835 255 --------------PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNR 320 (524)
Q Consensus 255 --------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 320 (524)
+-..+|.++-.+. +|..+|+|.|++. .+|+.+.++++|+.|+||+|.++ .+....+.-.+|++
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhh-hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 2234455444444 6677777777776 56677777777777777777776 33333444556777
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc--cCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEE
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESL 398 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 398 (524)
|++|.|+++ ..|..+..++ .|+.|.+.+|+++ |++..++.+..|+++..++|.+. ..|+.++.+.+|+.|
T Consensus 273 LNlSrNQLt-~LP~avcKL~------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLT------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred hccccchhc-cchHHHhhhH------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 777777776 4566666655 7888888888775 34444888888888888888887 788889999999999
Q ss_pred ECcCCcCeeeCCCC-CcccccccccccCCCCCCCCCCC
Q 009835 399 SLGRNSFTGKIPLG-TQLQSFNASVYAGNPELCGLPLP 435 (524)
Q Consensus 399 ~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~~~~~ 435 (524)
.|+.|++. .+|+. ..+..++...+..||.+.-+|.+
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 99999988 45544 45677888888889888765543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-29 Score=248.69 Aligned_cols=302 Identities=24% Similarity=0.281 Sum_probs=261.7
Q ss_pred CcEEEEEcCCCCCCCCCCCcce-eecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLK-GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
.-|+.+|++++ .++ +.+|....+++.++.|.|...++.. +|+.++.+.+|++|.+++|+++.. -..++
T Consensus 7 pFVrGvDfsgN--------DFsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~v-hGELs 75 (1255)
T KOG0444|consen 7 PFVRGVDFSGN--------DFSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLISV-HGELS 75 (1255)
T ss_pred ceeecccccCC--------cCCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHhh-hhhhc
Confidence 45788888885 566 6789999999999999999999887 899999999999999999998744 45688
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
.++.|+.+++.+|++...+.+..+..+..|..||||+|++...+ ..+...+++-.|+|++|++..++. .++-.+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP---~~LE~AKn~iVLNLS~N~IetIPn---~lfinL 149 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP---TNLEYAKNSIVLNLSYNNIETIPN---SLFINL 149 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc---hhhhhhcCcEEEEcccCccccCCc---hHHHhh
Confidence 99999999999999998888899999999999999999999885 588999999999999999988766 445444
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc-cccchhhcCCCCCCE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE-GGIPKFFGKMCSLNR 320 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~ 320 (524)
..|-.|||++|++ ..+|+.+..+. .|++|+|++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..
T Consensus 150 tDLLfLDLS~NrL--e~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRL--EMLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred HhHhhhccccchh--hhcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 8999999999999 78899998888 9999999999987544445667788899999887644 467889999999999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
+|+|.|.+. .+|+.+..+. +|+.|+||+|+|+......+.+.+|++|++|.|+++ .+|+.+..+++|+.|.+
T Consensus 227 vDlS~N~Lp-~vPecly~l~------~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPECLYKLR------NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred ccccccCCC-cchHHHhhhh------hhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence 999999987 6788887776 899999999999977666777889999999999998 88999999999999999
Q ss_pred cCCcCe-eeCCCC
Q 009835 401 GRNSFT-GKIPLG 412 (524)
Q Consensus 401 ~~N~l~-~~~p~~ 412 (524)
.+|+++ .-||++
T Consensus 299 n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSG 311 (1255)
T ss_pred ccCcccccCCccc
Confidence 999876 235544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.8e-26 Score=217.18 Aligned_cols=282 Identities=27% Similarity=0.309 Sum_probs=151.9
Q ss_pred ceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccc-cCCCCCcEEEccCCCCCCCCC
Q 009835 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPF-QYLSGLVYLHLENSNLFSLGS 181 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~ 181 (524)
+-+.+|+.++.+..|+.|+|.+|.+.. +| .|.++..|++|.++.|.+. .+|.+. .++.+|.+|||..|++.+.+
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~--lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P- 268 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRF--LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP- 268 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhccccc--CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc-
Confidence 335666666666666666666666654 44 5666666666666655554 344443 36666777777777766544
Q ss_pred chhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCC-----------------------------
Q 009835 182 LQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP----------------------------- 232 (524)
Q Consensus 182 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----------------------------- 232 (524)
..+..+.+|++||+|+|.+++.+. .++++ .|+.|.+.+|.+..+-.
T Consensus 269 -de~clLrsL~rLDlSNN~is~Lp~---sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 269 -DEICLLRSLERLDLSNNDISSLPY---SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred -hHHHHhhhhhhhcccCCccccCCc---ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 345666667777777776666642 56666 66666666665421000
Q ss_pred ---------CchhhhcccCcccEEEccCCCCCCCCCCchhhhccc--cccEEEeeccccccccchhhhcccccceE-eec
Q 009835 233 ---------SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR--NIQYLNLGFNSLQGSIPEAFQLMVSLRFL-YLT 300 (524)
Q Consensus 233 ---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls 300 (524)
..+.-...+.+.+.|++++-++ ..+|...|.... -.+.++++.|++. ++|..+..++.+.+. .++
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql--t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQL--TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLS 420 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhccccccc--ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhh
Confidence 0000001114556666666666 456666665541 2667777777776 455554444443332 222
Q ss_pred CcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCC----------------------
Q 009835 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDI---------------------- 358 (524)
Q Consensus 301 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l---------------------- 358 (524)
+|.+ +.+|..++.+++|..|++++|.+. .+|.+++.+. .|+.|+++.|++
T Consensus 421 nn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv------~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 421 NNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV------RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred cCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh------hhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 2222 244555555555555555555443 3344444433 455555555544
Q ss_pred -ccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 359 -TGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 359 -~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
....++ +.++.+|.+|||.+|.+. .+|..++++.+|++|++.||+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 443333 455555555555555554 45555555555555555555555
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=5.4e-22 Score=210.68 Aligned_cols=260 Identities=25% Similarity=0.283 Sum_probs=207.1
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
..|+++.+ .++ .+|+.+. ++|+.|++++|+++. +|.. +++|++|++++|+++. +|.. .++
T Consensus 204 ~~LdLs~~--------~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~s 263 (788)
T PRK15387 204 AVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLTS-LPVL---PPG 263 (788)
T ss_pred cEEEcCCC--------CCC-cCCcchh--cCCCEEEccCCcCCC--CCCC---CCCCcEEEecCCccCc-ccCc---ccc
Confidence 45788885 666 6787775 489999999999987 5653 5899999999999885 4542 468
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCccc
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIE 245 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 245 (524)
|++|++++|.+..++. ..++|+.|++++|.++..+. ..++|+.|++++|.+.+... .+..|+
T Consensus 264 L~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~Lp~-------lp~~L~ 325 (788)
T PRK15387 264 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASLPA-------LPSELC 325 (788)
T ss_pred cceeeccCCchhhhhh-----chhhcCEEECcCCccccccc------cccccceeECCCCccccCCC-------Cccccc
Confidence 9999999999886553 23679999999999998763 24789999999999987533 126789
Q ss_pred EEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccC
Q 009835 246 TLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325 (524)
Q Consensus 246 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (524)
.|++++|.++ .+|. .+.+|+.|++++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++
T Consensus 326 ~L~Ls~N~L~--~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 326 KLWAYNNQLT--SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSG 391 (788)
T ss_pred ccccccCccc--cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecC
Confidence 9999999994 4553 23489999999999994 5543 4578899999999984 6653 35799999999
Q ss_pred CCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcC
Q 009835 326 NKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 326 n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
|.+++. |.. .++|+.|++++|++++. |.+ ..+|+.|++++|+++ .+|..+.++++|+.|++++|++
T Consensus 392 N~Lt~L-P~l---------~s~L~~LdLS~N~LssI-P~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 392 NRLTSL-PVL---------PSELKELMVSGNRLTSL-PML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CcccCC-CCc---------ccCCCEEEccCCcCCCC-Ccc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 999853 322 13899999999999864 432 357899999999998 7899999999999999999999
Q ss_pred eeeCCC
Q 009835 406 TGKIPL 411 (524)
Q Consensus 406 ~~~~p~ 411 (524)
++.+|.
T Consensus 458 s~~~~~ 463 (788)
T PRK15387 458 SERTLQ 463 (788)
T ss_pred CchHHH
Confidence 988765
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-24 Score=222.23 Aligned_cols=224 Identities=25% Similarity=0.281 Sum_probs=118.2
Q ss_pred CCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcc----------------------cCcccE
Q 009835 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNL----------------------STSIET 246 (524)
Q Consensus 189 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----------------------~~~L~~ 246 (524)
.+|+++++++|+++..+ ..+..+.+|+.++..+|.+..... .++.. .+.|++
T Consensus 241 ~nl~~~dis~n~l~~lp---~wi~~~~nle~l~~n~N~l~~lp~---ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP---EWIGACANLEALNANHNRLVALPL---RISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred ccceeeecchhhhhcch---HHHHhcccceEecccchhHHhhHH---HHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 35666666666666654 467778888888888888754332 22222 255666
Q ss_pred EEccCCCCCCCCCCchhhhcccc-ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccC
Q 009835 247 LDLSDNNLPSSSVYPWLFNLSRN-IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325 (524)
Q Consensus 247 L~L~~n~l~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (524)
|+|..|++ ..+|+.++..... |..|+.+.|++....-..=...+.|+.|++.+|.++...-+.+.+.+.|+.|+|++
T Consensus 315 LdL~~N~L--~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 315 LDLQSNNL--PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeehhccc--cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 66666665 3444443333211 23333333332211100001234456666666666655555566666666666666
Q ss_pred CCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcC
Q 009835 326 NKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 326 n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
|++.......+.++. .|++|+||+|+++..+..+..++.|++|...+|++. ..| .+..+++|+.+|++.|++
T Consensus 393 NrL~~fpas~~~kle------~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLE------ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred cccccCCHHHHhchH------HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 666655555555544 566666666666644433555555666665555555 344 555555666666665555
Q ss_pred eee-CCCCCcccccccccccCCCC
Q 009835 406 TGK-IPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 406 ~~~-~p~~~~~~~~~~~~~~gn~~ 428 (524)
+-. +|...-...++...+.||.+
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcc
Confidence 522 22111113444445555554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.3e-24 Score=204.60 Aligned_cols=251 Identities=28% Similarity=0.348 Sum_probs=123.1
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLS 186 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 186 (524)
+.+.+.++..|.+|++++|.+.. +|.+++.+..++.|+.++|++. .+|+.++.+.+|+.|+.++|.+...+ +.++
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~--~~i~ 134 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELP--DSIG 134 (565)
T ss_pred ccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecC--chHH
Confidence 34445566666666666666654 5566666666666666665554 45555666666666666666555433 3345
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhc
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 266 (524)
.+..|+.++..+|+++..+ .++..+.+|..+++.+|.+....+. ..++ +.|++||...|-+ ..+|+.++.+
T Consensus 135 ~~~~l~dl~~~~N~i~slp---~~~~~~~~l~~l~~~~n~l~~l~~~---~i~m-~~L~~ld~~~N~L--~tlP~~lg~l 205 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLP---EDMVNLSKLSKLDLEGNKLKALPEN---HIAM-KRLKHLDCNSNLL--ETLPPELGGL 205 (565)
T ss_pred HHhhhhhhhccccccccCc---hHHHHHHHHHHhhccccchhhCCHH---HHHH-HHHHhcccchhhh--hcCChhhcch
Confidence 5555555555555555543 2444444555555555555444442 2222 4455555554444 3444444443
Q ss_pred cccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 267 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
- +|+.|++..|++. ..| .|.++..|+.|+++.|.+.....+...+++++..||+..|+++ ..|+.+..+.
T Consensus 206 ~-~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr------ 275 (565)
T KOG0472|consen 206 E-SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR------ 275 (565)
T ss_pred h-hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh------
Confidence 3 4444455555444 333 4444444555555554444222222224444444455544444 2333333322
Q ss_pred CccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCc
Q 009835 347 SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 382 (524)
+|++||+|+|.+++.+++++++ .|+.|-+.+|.+.
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 4444444444444444444444 4444444444443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2e-20 Score=213.12 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=53.3
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L 371 (524)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|......|.+ .++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~--~~nL 848 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDI--STNI 848 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcccccccc--cccc
Confidence 455566666665555556666666666666666654333333222 1235555555555443333332 2455
Q ss_pred cEEEccCCcCccccchhhhcCCCCCEEECcCC
Q 009835 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403 (524)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 403 (524)
+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 55556555555 45555555556666666553
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=4.4e-23 Score=194.13 Aligned_cols=298 Identities=24% Similarity=0.288 Sum_probs=177.4
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccC-CCCCCCCCchhcCCCCCCcEEE
Q 009835 117 LRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLEN-SNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
-..++|..|+|+.. .+.+|+.+++|+.|||++|.|+.+-|++|.++++|.+|-+.+ |+|+.++. ..|.++..|+.|.
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHh
Confidence 34566666666664 455666666666666666666666666666666655555544 55665554 5566666666666
Q ss_pred ccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhh----------h
Q 009835 196 LSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF----------N 265 (524)
Q Consensus 196 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----------~ 265 (524)
+.-|++.-.. .+.+..+++|..|.+.+|.+...... .+..+..++.+.+..|.+...--.++.. .
T Consensus 147 lNan~i~Cir--~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNANHINCIR--QDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred cChhhhcchh--HHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 6666655553 35566666666666666655444331 1222255555555555421100011111 1
Q ss_pred ccccccEEEeeccccccccchhhhc-ccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQL-MVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
.........+.+.++..+-+..|.. ...+..--.+.+...+..| ..|.++++|+.|+|++|+++++-+.+|..+.
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a--- 298 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA--- 298 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh---
Confidence 1111222222333333222222211 1122111122232333334 4688899999999999999999999998877
Q ss_pred CCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCccccccccc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASV 422 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 422 (524)
.+++|.|..|++..+... |.++..|++|+|.+|+|+...|..|..+.+|.+|++-.|++.+.+...+.-.++....
T Consensus 299 ---~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 299 ---ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ---hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 899999999998865544 8889999999999999998899999999999999999999887665433333333333
Q ss_pred ccCCC
Q 009835 423 YAGNP 427 (524)
Q Consensus 423 ~~gn~ 427 (524)
..|||
T Consensus 376 ~~~~~ 380 (498)
T KOG4237|consen 376 VVGNP 380 (498)
T ss_pred CCCCC
Confidence 34444
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=2.8e-20 Score=198.92 Aligned_cols=323 Identities=19% Similarity=0.218 Sum_probs=231.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCCCCcccc----------------eEeCCCCCcEEEEEcCCCC
Q 009835 34 MRCIDEEREALLTFKQSLVDEY---GVLSSWGKDNDKRDCCKWRG----------------VRCSNKTGHVKVLNLRRSD 94 (524)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~W~~~~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~ 94 (524)
.+..++|...++++.+.+.-|. ..-..|+ .+.++|.-.. |.| ..+.|+.+..-+..
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~~~~~~l~~~~~~~~~tv~~--~~~~vt~l~~~g~~ 132 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSENSQEILSIVFNTEGYTVEG--GGKSVTYTRVTESE 132 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCCcchhhheeeecCCceEEec--CCCccccccccccc
Confidence 4557889999999888886553 1234588 5778996544 556 34567777765532
Q ss_pred CCCC---C--------------CCcceeecC---cc-----ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccC
Q 009835 95 DENS---R--------------GTVLKGTIS---PA-----LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC 149 (524)
Q Consensus 95 ~~~~---~--------------~~~l~~~~~---~~-----l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~ 149 (524)
.... . .+...+.-+ .. -+-..+...|+++++.++. +|..+. ++|+.|+|++
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQITTLILDN 208 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cCCcEEEecC
Confidence 2100 0 000000000 01 1223567899999999986 676654 5899999999
Q ss_pred CCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC
Q 009835 150 GTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229 (524)
Q Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 229 (524)
|.+.. +|..+. .+|++|++++|.++.++. .+ .++|+.|++++|.+...+. .+. .+|+.|++++|.+..
T Consensus 209 N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~--~l--~~~L~~L~Ls~N~L~~LP~---~l~--s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 209 NELKS-LPENLQ--GNIKTLYANSNQLTSIPA--TL--PDTIQEMELSINRITELPE---RLP--SALQSLDLFHNKISC 276 (754)
T ss_pred CCCCc-CChhhc--cCCCEEECCCCccccCCh--hh--hccccEEECcCCccCcCCh---hHh--CCCCEEECcCCccCc
Confidence 99884 565543 589999999999987653 22 3589999999999987753 332 589999999999986
Q ss_pred CCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccc
Q 009835 230 INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309 (524)
Q Consensus 230 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 309 (524)
.+. .+ .++|+.|++++|+++ .+|..+ +++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|
T Consensus 277 LP~---~l---~~sL~~L~Ls~N~Lt--~LP~~l---p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 277 LPE---NL---PEELRYLSVYDNSIR--TLPAHL---PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LP 341 (754)
T ss_pred ccc---cc---CCCCcEEECCCCccc--cCcccc---hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CC
Confidence 433 22 268999999999994 455433 2479999999999984 55544 3689999999999984 67
Q ss_pred hhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhh
Q 009835 310 KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSL 389 (524)
Q Consensus 310 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 389 (524)
..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++..++.+. .+|+.|++++|++. .+|..+
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~~-LP~~lp--------~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQITV-LPETLP--------PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred hhhc--CcccEEECCCCCCCc-CChhhc--------CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 6553 699999999999984 455443 289999999999997655543 37999999999998 555544
Q ss_pred ----hcCCCCCEEECcCCcCe
Q 009835 390 ----SQLLKLESLSLGRNSFT 406 (524)
Q Consensus 390 ----~~l~~L~~L~l~~N~l~ 406 (524)
..++.+..|++.+|+++
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 44588899999999987
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=7.9e-20 Score=208.25 Aligned_cols=287 Identities=20% Similarity=0.242 Sum_probs=180.2
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.|++.++. + ..+|..+ ...+|++|++++|.+.. ++..+..+++|++|+|+++.....+| .++.+
T Consensus 590 ~Lr~L~~~~~~--------l-~~lP~~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYP--------L-RCMPSNF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA 656 (1153)
T ss_pred ccEEEEecCCC--------C-CCCCCcC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCC-ccccC
Confidence 46666666532 1 2344433 34556666666655543 44555555566666665554444444 25555
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
++|++|+|++|... ...+..+.++++|++|++++|. +...+. .+ ++++|+.|++++|......|. ...
T Consensus 657 ~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i-~l~sL~~L~Lsgc~~L~~~p~------~~~ 725 (1153)
T PLN03210 657 TNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPT---GI-NLKSLYRLNLSGCSRLKSFPD------IST 725 (1153)
T ss_pred CcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCC---cC-CCCCCCEEeCCCCCCcccccc------ccC
Confidence 55666666554322 1112335555555566555542 222221 11 455555555555543322221 113
Q ss_pred cccEEEccCCCCCCCCCC-----------------------------chhhhccccccEEEeeccccccccchhhhcccc
Q 009835 243 SIETLDLSDNNLPSSSVY-----------------------------PWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS 293 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~-----------------------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 293 (524)
+|++|++++|.+ ..+| +.....+++|+.|++++|...+.+|..++++++
T Consensus 726 nL~~L~L~~n~i--~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 726 NISWLDLDETAI--EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred CcCeeecCCCcc--ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 444555544443 1222 112223458999999999888789999999999
Q ss_pred cceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcE
Q 009835 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKI 373 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~ 373 (524)
|+.|++++|...+.+|..+ .+++|+.|++++|......|.. .++|+.|+|++|.++..+..+..+++|+.
T Consensus 804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------~~nL~~L~Ls~n~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------STNISDLNLSRTGIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------ccccCEeECCCCCCccChHHHhcCCCCCE
Confidence 9999999987655777665 7899999999998654444332 23899999999999976556899999999
Q ss_pred EEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 374 LVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 374 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
|++++|.-...+|..+..+++|+.+++++|.-.
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 999996554468888899999999999998633
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=8.8e-23 Score=210.61 Aligned_cols=299 Identities=29% Similarity=0.396 Sum_probs=179.0
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
++..||++++ ..+.+|..+..+.+|+.|+++.|.|.. .|....++.+|++|.|.+|.+ ...|..+..+
T Consensus 46 ~L~~l~lsnn---------~~~~fp~~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNN---------QISSFPIQITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRL-QSLPASISEL 113 (1081)
T ss_pred eeEEeecccc---------ccccCCchhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchh-hcCchhHHhh
Confidence 4677888873 456888889999999999999999887 688889999999999996654 4788899999
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCC----------------------------------------CCCcE-EEccCCCCC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHL----------------------------------------SSLRH-LDLSYINLT 202 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l----------------------------------------~~L~~-L~Ls~n~l~ 202 (524)
.+|++|+++.|++...+.. +..+ ..|++ |+|++|.+.
T Consensus 114 knl~~LdlS~N~f~~~Pl~--i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~ 191 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLV--IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME 191 (1081)
T ss_pred hcccccccchhccCCCchh--HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh
Confidence 9999999999987654432 1111 12222 444444444
Q ss_pred CCCCchHhhhcccCCCEEEeeCCCCCCCCCCc---------------hhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 203 KSSDWFQVVAKLRSLKTLVLHSCALPPINPSS---------------IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 203 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
.. .+..+++|+.|....|.+....... ....-...+|++++++.|++ ..+|.++....
T Consensus 192 ~~-----dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 192 VL-----DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGACA 264 (1081)
T ss_pred hh-----hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhcc
Confidence 11 2223333333333333322111000 00001125666666666666 34455555544
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC------
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------ 341 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 341 (524)
+|+.++..+|+++ .+|..+....+|+.|.+..|.+. .+|..+.+++.|++|+|..|++...++..+..+..
T Consensus 265 -nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 265 -NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred -cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 6666666666664 55666666666666666666666 56777788999999999999998665544432210
Q ss_pred -------------CCCCCCccEEEcCCCCCccC-CCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 342 -------------GCTMNSLEGVCLEGNDITGP-LPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 342 -------------~~~~~~L~~L~Ls~n~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
...++.|+.|++.+|.++.. .|.+.++++|++|+|++|++.......+.++..|+.|+||||+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 11233445555555555543 233555555555555555555333334455555555555555554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-22 Score=188.15 Aligned_cols=132 Identities=25% Similarity=0.225 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccC-CCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSC-GTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~~~ 161 (524)
...+.|+|..| .++...+.+|+.+++||.|||++|.|+.+ -|++|.+++.|.+|-+.+ |+|+......|+
T Consensus 67 ~~tveirLdqN--------~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQN--------QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccC--------CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 45788888884 78877788999999999999999999998 899999999999988877 788777777899
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 226 (524)
++..|+.|.+.-|++.-+.. +.|..+++|..|.+.+|.+..+.. ..+..+..++.+++..|.
T Consensus 138 gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCc
Confidence 99999999999998875554 778899999999999988877642 467777888888887776
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.1e-19 Score=193.13 Aligned_cols=258 Identities=24% Similarity=0.273 Sum_probs=201.2
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
..-..|+++++.++. +|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++.++. ..++|++|
T Consensus 201 ~~~~~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~-----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCc--CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC-----ccccccee
Confidence 557789999999985 788775 489999999999885 554 35899999999999997653 24799999
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.++..+.. ..+|+.|++++|.++..+. .+++|+.|++++|++. .++. .+.+|+.|+
T Consensus 268 ~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~-------~p~~L~~LdLS~N~L~--~Lp~----lp~~L~~L~ 328 (788)
T PRK15387 268 SIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV-------LPPGLQELSVSDNQLA--SLPA----LPSELCKLW 328 (788)
T ss_pred eccCCchhhhhhc------hhhcCEEECcCCccccccc-------cccccceeECCCCccc--cCCC----Ccccccccc
Confidence 9999998876532 2578899999999986543 1378999999999994 3443 234799999
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+++|.+++ +|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|.++. +|.. ..+|+.|+++
T Consensus 329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---------~~~L~~LdLs 390 (788)
T PRK15387 329 AYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---------PSGLKELIVS 390 (788)
T ss_pred cccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---------ccccceEEec
Confidence 99999984 5542 3589999999999994 5543 3578999999999985 3332 1379999999
Q ss_pred CCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCC
Q 009835 355 GNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELC 430 (524)
Q Consensus 355 ~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C 430 (524)
+|++++.++. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|.. ..+..+..+.+.+|+...
T Consensus 391 ~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 391 GNRLTSLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCcccCCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 9999964432 3689999999999984 66543 46889999999998 67754 346677778899999754
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.4e-19 Score=193.58 Aligned_cols=255 Identities=19% Similarity=0.257 Sum_probs=195.5
Q ss_pred ccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCC
Q 009835 73 WRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS 152 (524)
Q Consensus 73 w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~ 152 (524)
+.-..|.. ...+.|++++. .++ .+|..+. ++|+.|+|++|.++. +|..+. ++|++|++++|.+
T Consensus 170 ~r~~~Cl~--~~~~~L~L~~~--------~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~L 232 (754)
T PRK15370 170 QRMRDCLK--NNKTELRLKIL--------GLT-TIPACIP--EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQL 232 (754)
T ss_pred HHHHhhcc--cCceEEEeCCC--------CcC-cCCcccc--cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCcc
Confidence 44445643 45688999885 444 3555543 479999999999996 676554 5899999999998
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCC
Q 009835 153 LLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINP 232 (524)
Q Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 232 (524)
. .+|..+. .+|+.|+|++|.+..++. .+ .++|++|++++|.++..+. .+ .++|+.|++++|.++....
T Consensus 233 t-sLP~~l~--~~L~~L~Ls~N~L~~LP~--~l--~s~L~~L~Ls~N~L~~LP~---~l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 233 T-SIPATLP--DTIQEMELSINRITELPE--RL--PSALQSLDLFHNKISCLPE---NL--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred c-cCChhhh--ccccEEECcCCccCcCCh--hH--hCCCCEEECcCCccCcccc---cc--CCCCcEEECCCCccccCcc
Confidence 7 4566553 479999999999986653 23 3589999999999987653 23 2589999999999987543
Q ss_pred CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhh
Q 009835 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312 (524)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 312 (524)
.+ .++|+.|++++|.++ .+|..+ +++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 301 ---~l---p~sL~~L~Ls~N~Lt--~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 301 ---HL---PSGITHLNVQSNSLT--ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred ---cc---hhhHHHHHhcCCccc--cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh
Confidence 11 267999999999994 455443 3589999999999985 676553 79999999999998 577665
Q ss_pred cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC----CCCCCCCcEEEccCCcCc
Q 009835 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD----LGGFSSLKILVLGENRLN 382 (524)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~ 382 (524)
. ++|++|++++|.++.. |..+.. +|+.|++++|+++..+.. ...++.+..|++.+|.++
T Consensus 366 p--~~L~~LdLs~N~Lt~L-P~~l~~--------sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 P--PTITTLDVSRNALTNL-PENLPA--------ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred c--CCcCEEECCCCcCCCC-CHhHHH--------HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 6899999999999854 444443 699999999999865433 345688999999999997
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=6.5e-20 Score=181.60 Aligned_cols=282 Identities=25% Similarity=0.222 Sum_probs=150.8
Q ss_pred EEccCCCCCCCCCccccCCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCCCCCCCC-----CchhcCCCCC
Q 009835 120 LDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK----VPRPFQYLSGLVYLHLENSNLFSLG-----SLQWLSHLSS 190 (524)
Q Consensus 120 L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~l~~ 190 (524)
|+|..+.+++......+..+..|++|+++++.++.. ++..+...++|++|+++++.+...+ ....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444444333344444444455555555544321 2333344445555555555443100 0123445556
Q ss_pred CcEEEccCCCCCCCCCchHhhhccc---CCCEEEeeCCCCCCCCCCch-hhhccc-CcccEEEccCCCCCCCCCCchh--
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLR---SLKTLVLHSCALPPINPSSI-WHFNLS-TSIETLDLSDNNLPSSSVYPWL-- 263 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~---~L~~L~L~~n~l~~~~~~~~-~~~~~~-~~L~~L~L~~n~l~~~~~~~~~-- 263 (524)
|++|++++|.+.... ...+..+. +|++|++++|.+.+...... ...... ++|+.|++++|.+++ .....+
T Consensus 83 L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~~~~ 159 (319)
T cd00116 83 LQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-ASCEALAK 159 (319)
T ss_pred eeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-hHHHHHHH
Confidence 666666666555321 22333333 36666666666543111100 011111 566777777777653 111111
Q ss_pred -hhccccccEEEeeccccccc----cchhhhcccccceEeecCcccccc----cchhhcCCCCCCEEEccCCCCCCchhH
Q 009835 264 -FNLSRNIQYLNLGFNSLQGS----IPEAFQLMVSLRFLYLTSNELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSE 334 (524)
Q Consensus 264 -~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 334 (524)
+...++|++|++++|.+++. ++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 12223677777777777642 233344556788888888877633 334456677888888888888764444
Q ss_pred HHHhccCCCCCCCccEEEcCCCCCccCC----C-CCCCCCCCcEEEccCCcCccc----cchhhhcC-CCCCEEECcCCc
Q 009835 335 MIQNLSGGCTMNSLEGVCLEGNDITGPL----P-DLGGFSSLKILVLGENRLNGT----IDKSLSQL-LKLESLSLGRNS 404 (524)
Q Consensus 335 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~-~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~l~~N~ 404 (524)
.+..... ...+.|++|++++|.++... . .+..+++|+.+++++|.++.. ....+... +.|+++++.+|+
T Consensus 240 ~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 240 ALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 4432100 01247888888888876211 1 255567888888888888755 33444444 678888888876
Q ss_pred C
Q 009835 405 F 405 (524)
Q Consensus 405 l 405 (524)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.2e-19 Score=176.66 Aligned_cols=276 Identities=24% Similarity=0.222 Sum_probs=179.3
Q ss_pred cce-eecCccccCCCCCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCc------cCCccccCCCCCcEEEc
Q 009835 102 VLK-GTISPALLKLHDLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLL------KVPRPFQYLSGLVYLHL 171 (524)
Q Consensus 102 ~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L 171 (524)
.++ +.....+..+..|++|+++++.++.. .++..+...+.|++|+++++.+.+ .++..+..+++|++|++
T Consensus 9 ~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 9 LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 444 34445566677788888888887543 145556677788888888877652 23445677888889999
Q ss_pred cCCCCCCCCCchhcCCC---CCCcEEEccCCCCCCC--CCchHhhhcc-cCCCEEEeeCCCCCCCCCCc-hhhhcccCcc
Q 009835 172 ENSNLFSLGSLQWLSHL---SSLRHLDLSYINLTKS--SDWFQVVAKL-RSLKTLVLHSCALPPINPSS-IWHFNLSTSI 244 (524)
Q Consensus 172 ~~n~l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L 244 (524)
++|.+.... ...+..+ ++|++|++++|.+++. ..+...+..+ ++|++|++++|.+++..... ...+....+|
T Consensus 89 ~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 89 SDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred cCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 888876322 2333333 4489999988887743 1123455666 88899999999887532210 1122222689
Q ss_pred cEEEccCCCCCCCCCCchhhhc---cccccEEEeecccccccc----chhhhcccccceEeecCcccccccchhhc----
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNL---SRNIQYLNLGFNSLQGSI----PEAFQLMVSLRFLYLTSNELEGGIPKFFG---- 313 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---- 313 (524)
++|++++|.+.+ .....+... .++|++|++++|.+++.. ...+..+++|++|++++|.+++.....+.
T Consensus 168 ~~L~l~~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 168 KELNLANNGIGD-AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred CEEECcCCCCch-HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 999999998864 222222221 238999999999887443 34456678899999999988753333332
Q ss_pred -CCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC----C-CCCC-CCCcEEEccCCcC
Q 009835 314 -KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP----D-LGGF-SSLKILVLGENRL 381 (524)
Q Consensus 314 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~----~-~~~l-~~L~~L~Ls~N~l 381 (524)
..+.|++|++++|.+++.....+.... ..+++|+++++++|.++.... . +... +.|+.|++.+|.+
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 237899999999988744333332211 123489999999999986522 2 4444 6889999888764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.6e-19 Score=150.35 Aligned_cols=181 Identities=30% Similarity=0.440 Sum_probs=154.3
Q ss_pred hhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCC
Q 009835 236 WHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKM 315 (524)
Q Consensus 236 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 315 (524)
.++.. ..++.|.+++|++ ..+|+.+..+. +|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 28 gLf~~-s~ITrLtLSHNKl--~~vppnia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNM-SNITRLTLSHNKL--TVVPPNIAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccch-hhhhhhhcccCce--eecCCcHHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 34555 7888999999999 67899999988 9999999999998 68889999999999999999998 899999999
Q ss_pred CCCCEEEccCCCCCC-chhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCC
Q 009835 316 CSLNRLCLPYNKLSG-DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLK 394 (524)
Q Consensus 316 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 394 (524)
|.|+.||+.+|++.. ..|..|..+. .|+.|+|++|.+.-.+|+.+++++|+.|.+..|.+. .+|.+++.++.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~------tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred chhhhhhccccccccccCCcchhHHH------HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 999999999999874 4566666554 899999999999988888999999999999999998 78999999999
Q ss_pred CCEEECcCCcCeeeCCCCCcccccc---cccccCCCCC
Q 009835 395 LESLSLGRNSFTGKIPLGTQLQSFN---ASVYAGNPEL 429 (524)
Q Consensus 395 L~~L~l~~N~l~~~~p~~~~~~~~~---~~~~~gn~~~ 429 (524)
|++|.+.+|+++-..|+...+.... ......|||.
T Consensus 175 lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred HHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 9999999999997666544433332 1234667764
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=2.7e-14 Score=152.49 Aligned_cols=151 Identities=26% Similarity=0.387 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC----cccceEeCCC--C--CcEEEEEcCCCCCCCCCCCccee
Q 009835 34 MRCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCC----KWRGVRCSNK--T--GHVKVLNLRRSDDENSRGTVLKG 105 (524)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~~~~~~~~~l~~ 105 (524)
..+.+.|..||+++|.++.++.. .+|. +.+|| .|.||.|... . .+|+.|+|+++ .+.|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~g 432 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLRG 432 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCCC--------Cccc
Confidence 35677899999999999875532 4786 33332 7999999522 1 25899999985 8899
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..++++++|++|+|++|.+.+. +|..++.+++|+.|+|++|.+.+.+|+.++++++|++|+|++|.+..... ..+
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l 510 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP-AAL 510 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC-hHH
Confidence 9999999999999999999999987 99999999999999999999999999999999999999999998874322 333
Q ss_pred CC-CCCCcEEEccCCC
Q 009835 186 SH-LSSLRHLDLSYIN 200 (524)
Q Consensus 186 ~~-l~~L~~L~Ls~n~ 200 (524)
.. ..++..+++.+|.
T Consensus 511 ~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 511 GGRLLHRASFNFTDNA 526 (623)
T ss_pred hhccccCceEEecCCc
Confidence 32 2344555555553
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=133.92 Aligned_cols=160 Identities=29% Similarity=0.407 Sum_probs=80.0
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
.++++.+.|.+++|+++..+. .++.+.+|+.|++++|++...++ .+..+ ++|+.|+++-|++ ...|..++.
T Consensus 30 f~~s~ITrLtLSHNKl~~vpp---nia~l~nlevln~~nnqie~lp~---~issl-~klr~lnvgmnrl--~~lprgfgs 100 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPP---NIAELKNLEVLNLSNNQIEELPT---SISSL-PKLRILNVGMNRL--NILPRGFGS 100 (264)
T ss_pred cchhhhhhhhcccCceeecCC---cHHHhhhhhhhhcccchhhhcCh---hhhhc-hhhhheecchhhh--hcCccccCC
Confidence 344445555555555555432 44455555555555555544443 33333 5555555555555 233444443
Q ss_pred ccccccEEEeecccccc-ccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCC
Q 009835 266 LSRNIQYLNLGFNSLQG-SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 344 (524)
.+ .|+.||++.|++.. .+|..|-.+..|+.|++++|.+. .+|...+++++|+.|.+..|.+- ..|.+++.+.
T Consensus 101 ~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt---- 173 (264)
T KOG0617|consen 101 FP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT---- 173 (264)
T ss_pred Cc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH----
Confidence 33 55555555555542 24555555555555556655555 45555555555555555555543 3444444443
Q ss_pred CCCccEEEcCCCCCccCCC
Q 009835 345 MNSLEGVCLEGNDITGPLP 363 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~~~~~ 363 (524)
.|++|.+++|+++-.+|
T Consensus 174 --~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 174 --RLRELHIQGNRLTVLPP 190 (264)
T ss_pred --HHHHHhcccceeeecCh
Confidence 44444444444443333
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=152.46 Aligned_cols=117 Identities=35% Similarity=0.570 Sum_probs=102.3
Q ss_pred CCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCC
Q 009835 317 SLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKL 395 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 395 (524)
.++.|+|++|.+.+.+|..+..++ +|+.|+|++|.+.+.+|. +..+++|+.|+|++|++++.+|..++++++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~------~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR------HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC------CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 378899999999999999998876 999999999999998886 9999999999999999999999999999999
Q ss_pred CEEECcCCcCeeeCCCCCc--ccccccccccCCCCCCCCCCCCCCC
Q 009835 396 ESLSLGRNSFTGKIPLGTQ--LQSFNASVYAGNPELCGLPLPNKCP 439 (524)
Q Consensus 396 ~~L~l~~N~l~~~~p~~~~--~~~~~~~~~~gn~~~C~~~~~~~c~ 439 (524)
+.|+|++|+++|.+|.... ........+.+|+.+|+.+....|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999999999997532 2233456789999999877656664
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.9e-14 Score=136.04 Aligned_cols=219 Identities=23% Similarity=0.211 Sum_probs=134.4
Q ss_pred cCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcc
Q 009835 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNL 240 (524)
Q Consensus 161 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 240 (524)
.++.+|+.+.|.++.+...+.......|++++.|||+.|-+............+++|+.|+++.|.+...... .....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhh
Confidence 4567788888887777654443456778888888888888887755566777888888888888887654443 11223
Q ss_pred cCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccccccc-chhhcCCCCCC
Q 009835 241 STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGI-PKFFGKMCSLN 319 (524)
Q Consensus 241 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~ 319 (524)
++.|+.|.++.|+++- .-..++....|+|+.|++..|............+..|+.|||++|++.... -...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 3788888888888864 333444455568888888888532233333445667888888888776322 13456677777
Q ss_pred EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccC--CCCCCCCCCCcEEEccCCcCc
Q 009835 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP--LPDLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 320 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~l~~L~~L~Ls~N~l~ 382 (524)
.|+++.+.+....-.....+.....+++|++|+++.|++... ...+..+++|+.|.+..|.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 777777766533211111111112344666666666666432 122444555555555555554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=1.1e-13 Score=136.92 Aligned_cols=195 Identities=27% Similarity=0.322 Sum_probs=142.9
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhc
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 266 (524)
.+..-...|++.|++...+ ..+..+..|+.+.+..|.+..+.. .+.+. ..|..|||+.|++ ...|..++.+
T Consensus 73 ~ltdt~~aDlsrNR~~elp---~~~~~f~~Le~liLy~n~~r~ip~---~i~~L-~~lt~l~ls~Nql--S~lp~~lC~l 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELP---EEACAFVSLESLILYHNCIRTIPE---AICNL-EALTFLDLSSNQL--SHLPDGLCDL 143 (722)
T ss_pred cccchhhhhccccccccCc---hHHHHHHHHHHHHHHhccceecch---hhhhh-hHHHHhhhccchh--hcCChhhhcC
Confidence 3444455667777777664 355666677777777777766555 45555 7888888888888 5567777766
Q ss_pred cccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 267 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
+ |+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++.. +|.++..++
T Consensus 144 p--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp------ 212 (722)
T KOG0532|consen 144 P--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP------ 212 (722)
T ss_pred c--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc------
Confidence 5 888888888887 67777888888888888888888 677778888888888888888874 455555664
Q ss_pred CccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCC---CCCEEECcCC
Q 009835 347 SLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLL---KLESLSLGRN 403 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~l~~N 403 (524)
|..||+|+|+++.++-.|.+|+.|++|-|.+|.+. ..|..++-.- -.++|+..-+
T Consensus 213 -Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 -LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -eeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888888888876666888888888888888887 4555554322 2456676666
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=6.2e-13 Score=124.58 Aligned_cols=256 Identities=21% Similarity=0.271 Sum_probs=118.1
Q ss_pred cCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCCCCc----cCCccccCCCCCcEEEccCCCCCCC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGTSLL----KVPRPFQYLSGLVYLHLENSNLFSL 179 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (524)
+-+.+-.+..++.++|++|.+.... +...+.+.++|+..+++ +-++| .+|+++..+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l---------------- 84 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKML---------------- 84 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHH----------------
Confidence 3345566778888888888775431 23445566677777776 23333 233322100
Q ss_pred CCchhcCCCCCCcEEEccCCCCCCC--CCchHhhhcccCCCEEEeeCCCCCCCCCCch----------hhhcccCcccEE
Q 009835 180 GSLQWLSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLHSCALPPINPSSI----------WHFNLSTSIETL 247 (524)
Q Consensus 180 ~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~----------~~~~~~~~L~~L 247 (524)
...+..+++|++||||+|-+... ..+..-+.++..|++|.|.+|.+.......+ ......+.|+++
T Consensus 85 --~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 85 --SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred --HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 02233444555555555554432 2222334455666666666665432211100 000111455555
Q ss_pred EccCCCCCCCC--CCchhhhccccccEEEeeccccccc----cchhhhcccccceEeecCcccccc----cchhhcCCCC
Q 009835 248 DLSDNNLPSSS--VYPWLFNLSRNIQYLNLGFNSLQGS----IPEAFQLMVSLRFLYLTSNELEGG----IPKFFGKMCS 317 (524)
Q Consensus 248 ~L~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~ 317 (524)
...+|++-... ..+..++..+.|+.+.+..|.|... +...+..+++|+.|||.+|-++.. +...+..+++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 55555542100 1111222223455555555544311 122334445555555555544421 1223334444
Q ss_pred CCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccc----cchhhhcCC
Q 009835 318 LNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT----IDKSLSQLL 393 (524)
Q Consensus 318 L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~ 393 (524)
|+.|++++|.+.......|...- -...|+|++|.+.+|.++.. +...+...+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al------------------------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDAL------------------------KESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred heeecccccccccccHHHHHHHH------------------------hccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 44445554444443333332210 12356666666666666532 223344566
Q ss_pred CCCEEECcCCcC
Q 009835 394 KLESLSLGRNSF 405 (524)
Q Consensus 394 ~L~~L~l~~N~l 405 (524)
.|..|+|++|.+
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 677777777776
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.7e-11 Score=125.01 Aligned_cols=197 Identities=29% Similarity=0.420 Sum_probs=86.8
Q ss_pred EEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCC-CCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 119 HLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLS-GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 119 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
.+++..|.+.. ....+..++.++.|++.+|.++. +|.....+. +|+.|++++|++..++ ..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh--hhhhccccccccccC
Confidence 34455444422 12333334455555555554442 223333332 5555555555554332 124455555555555
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
+|++...+. ..... +.|+.|++++|++ ..++... .....|++|.+++
T Consensus 172 ~N~l~~l~~---~~~~~---------------------------~~L~~L~ls~N~i--~~l~~~~-~~~~~L~~l~~~~ 218 (394)
T COG4886 172 FNDLSDLPK---LLSNL---------------------------SNLNNLDLSGNKI--SDLPPEI-ELLSALEELDLSN 218 (394)
T ss_pred Cchhhhhhh---hhhhh---------------------------hhhhheeccCCcc--ccCchhh-hhhhhhhhhhhcC
Confidence 555544431 22244 4444555555544 2233322 1121355555555
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGND 357 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~ 357 (524)
|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|.++.... ++.+. +++.|++++|.
T Consensus 219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~------~l~~L~~s~n~ 288 (394)
T COG4886 219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLT------NLRELDLSGNS 288 (394)
T ss_pred Ccce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccC------ccCEEeccCcc
Confidence 5322 23334444455555555555444 223444445555555555555543322 22222 55555555555
Q ss_pred CccCCC
Q 009835 358 ITGPLP 363 (524)
Q Consensus 358 l~~~~~ 363 (524)
+...++
T Consensus 289 ~~~~~~ 294 (394)
T COG4886 289 LSNALP 294 (394)
T ss_pred ccccch
Confidence 554443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=6e-12 Score=110.78 Aligned_cols=131 Identities=23% Similarity=0.268 Sum_probs=42.1
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccC-CCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 112 LKLHDLRHLDLSNNHFGGSPLPEFIG-SLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
.+..++++|+|++|.|+.. +.++ .+.+|+.|+|++|.+... +.+..+++|++|++++|.++++.. .....+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence 3444567777777777653 2343 466777777777777643 246667777777777777765542 11235677
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDL 249 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L 249 (524)
|++|++++|++....+ ...+..+++|+.|++.+|.+.....-...+...+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777777766644 356666777777777777665433222222333366666654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=2.5e-11 Score=123.89 Aligned_cols=197 Identities=29% Similarity=0.389 Sum_probs=87.9
Q ss_pred EEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhccc-CCCEEEeeCCCCCCCCCCchhhhcccCcccE
Q 009835 168 YLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR-SLKTLVLHSCALPPINPSSIWHFNLSTSIET 246 (524)
Q Consensus 168 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 246 (524)
.+++..|.+.... ..+..++.++.|++.+|.++.++. ....+. +|+.|++++|.+..... .+... ++|+.
T Consensus 97 ~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i~~---~~~~~~~nL~~L~l~~N~i~~l~~---~~~~l-~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDIPP---LIGLLKSNLKELDLSDNKIESLPS---PLRNL-PNLKN 167 (394)
T ss_pred eeeccccccccCc--hhhhcccceeEEecCCcccccCcc---ccccchhhcccccccccchhhhhh---hhhcc-ccccc
Confidence 4555555542111 223344556666666665555532 222232 45555555555444321 11222 55555
Q ss_pred EEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCC
Q 009835 247 LDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 247 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
|++++|++ ..++....... +|+.|++++|++. .+|........|+.|.+++|.+. ..+..+..+.++
T Consensus 168 L~l~~N~l--~~l~~~~~~~~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-------- 234 (394)
T COG4886 168 LDLSFNDL--SDLPKLLSNLS-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-------- 234 (394)
T ss_pred cccCCchh--hhhhhhhhhhh-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc--------
Confidence 55555554 22333222222 4455555555544 33333333333444444444322 233334444444
Q ss_pred CCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 327 KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 327 ~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
..+.+.+|++...+..+..+++++.|++++|.++...+ ++.+.+++.|++++|.++
T Consensus 235 ----------------------~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 235 ----------------------SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----------------------cccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 44444444444332224445555555555555553222 555555555555555555
Q ss_pred eeCC
Q 009835 407 GKIP 410 (524)
Q Consensus 407 ~~~p 410 (524)
...|
T Consensus 291 ~~~~ 294 (394)
T COG4886 291 NALP 294 (394)
T ss_pred ccch
Confidence 4443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=8.6e-13 Score=130.70 Aligned_cols=177 Identities=20% Similarity=0.309 Sum_probs=150.0
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 291 (524)
-.+.--...+++.|++..... ....+ ..|+.+.+..|.+ ..+++.+..+. .|+.|+++.|+++ ..|..++.+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~---~~~~f-~~Le~liLy~n~~--r~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~l 143 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPE---EACAF-VSLESLILYHNCI--RTIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDL 143 (722)
T ss_pred ccccchhhhhccccccccCch---HHHHH-HHHHHHHHHhccc--eecchhhhhhh-HHHHhhhccchhh-cCChhhhcC
Confidence 344455678889998877655 33444 7788999999998 67888888887 8999999999998 678788777
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSL 371 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L 371 (524)
+ |+.|.+++|+++ .+|..++.++.|..||.+.|.+. ..|..++.+. +|+.|++..|.+...++++..+ .|
T Consensus 144 p-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~------slr~l~vrRn~l~~lp~El~~L-pL 213 (722)
T KOG0532|consen 144 P-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT------SLRDLNVRRNHLEDLPEELCSL-PL 213 (722)
T ss_pred c-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH------HHHHHHHhhhhhhhCCHHHhCC-ce
Confidence 5 999999999999 78888999999999999999987 4556666655 8999999999999888887744 59
Q ss_pred cEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 372 KILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
..||++.|+++ .+|..|.+|+.|++|-|.+|+++.
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 99999999999 899999999999999999999984
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.8e-12 Score=124.70 Aligned_cols=213 Identities=22% Similarity=0.175 Sum_probs=110.7
Q ss_pred CCCCCCEEEccCCCCCccCC-ccccCCCCCcEEEccCCCCCCCCCc-hhcCCCCCCcEEEccCCCCCCCCCchHhhhccc
Q 009835 138 SLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215 (524)
Q Consensus 138 ~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 215 (524)
++++|+...|.++....... .....+++++.|||++|-+..+... .....+++|+.|+++.|.+....+ ...-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhh
Confidence 45555666555444332111 2344556666666666655433221 223456666666666666554321 11222556
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeecccccccc-chhhhccccc
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSI-PEAFQLMVSL 294 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 294 (524)
.|+.|.++.|.++.... .++....++|+.|+|..|... -+...-...+..|+.|||++|++-... ....+.++.|
T Consensus 198 ~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 66677777766653222 133333377777777776321 111222233346777777777665321 1345567777
Q ss_pred ceEeecCcccccc-cchh-----hcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCcc
Q 009835 295 RFLYLTSNELEGG-IPKF-----FGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360 (524)
Q Consensus 295 ~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~ 360 (524)
+.|+++.+.+... .|+. ...+++|++|+++.|++.+. ..+.....+++|+.|.+..|.++.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-----~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-----RSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-----cccchhhccchhhhhhcccccccc
Confidence 7777777766632 1222 34567788888888877532 111111223467777777777764
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=4.6e-12 Score=118.80 Aligned_cols=217 Identities=21% Similarity=0.183 Sum_probs=123.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCCcce----eecCccccCCCCCCEEEccCCCCCCC---CCc-------cccCCCCCCCEEE
Q 009835 81 KTGHVKVLNLRRSDDENSRGTVLK----GTISPALLKLHDLRHLDLSNNHFGGS---PLP-------EFIGSLSRLRYLN 146 (524)
Q Consensus 81 ~~~~v~~L~L~~~~~~~~~~~~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p-------~~l~~l~~L~~L~ 146 (524)
....++.|+|+++ .+. ..+.+.+.+.++|+.-+++.- ++|. .+| ..+..+++|++|+
T Consensus 28 ~~~s~~~l~lsgn--------t~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 28 PMDSLTKLDLSGN--------TFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred ccCceEEEeccCC--------chhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 3467999999996 332 234456777889999999874 2222 133 3345678999999
Q ss_pred ccCCCCCccCCccc----cCCCCCcEEEccCCCCCCCCCc------------hhcCCCCCCcEEEccCCCCCCCC--Cch
Q 009835 147 LSCGTSLLKVPRPF----QYLSGLVYLHLENSNLFSLGSL------------QWLSHLSSLRHLDLSYINLTKSS--DWF 208 (524)
Q Consensus 147 L~~n~~~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~--~~~ 208 (524)
||.|.+....++.| ..+..|++|.|.+|.+...... ...+.-++|+++..+.|++...+ .+.
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 99998876555543 4678888888888877532211 11234456666666666655442 223
Q ss_pred HhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccc----c
Q 009835 209 QVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS----I 284 (524)
Q Consensus 209 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~ 284 (524)
..+...+.|+.+.+..|.+..... ......+..+++|+.|||.+|-++.. +
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~-------------------------~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGV-------------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred HHHHhccccceEEEecccccCchh-------------------------HHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 344455555555555555432211 01111222333555555555555422 2
Q ss_pred chhhhcccccceEeecCcccccccchhh-----cCCCCCCEEEccCCCCCCc
Q 009835 285 PEAFQLMVSLRFLYLTSNELEGGIPKFF-----GKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 285 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~ 331 (524)
...++.+++|+.|++++|.+......++ ...|+|+.|.+.+|.++..
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 3344556666777777766664333222 1346677777777766543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=6.8e-12 Score=115.09 Aligned_cols=130 Identities=26% Similarity=0.283 Sum_probs=90.4
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
.|+++|+|+|.|+ .+.+.+.-.|.++.|++|.|.+... . .+..+++|+.||||+|.++. ...+-..+. ++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLG------NI 354 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLAE-CVGWHLKLG------NI 354 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhHh-hhhhHhhhc------CE
Confidence 6777788887777 5666666777788888888877632 2 36777788888888887653 233333333 77
Q ss_pred cEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcccc-chhhhcCCCCCEEECcCCcCeeeC
Q 009835 349 EGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI-DKSLSQLLKLESLSLGRNSFTGKI 409 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~ 409 (524)
+.|.|++|.+. ....++.+-+|..||+++|++.... -..++++|-|+.+.+.+|++.+.+
T Consensus 355 KtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 355 KTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88888888775 2334666778888888888876332 245788888888888888888544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=1.7e-11 Score=112.47 Aligned_cols=232 Identities=22% Similarity=0.215 Sum_probs=139.0
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
++..|..++...--.+.|-....+|-.+.-+++|..+.++++.-.. +-+....-|.|+++...+..+... | .+-..
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe 258 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDV-P-SLLPE 258 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccc-c-cccch
Confidence 5666666653221112233444566667778888889888875433 222233346788887775443321 1 11111
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
..+....-+.-.....+....+..-+.|+++||++|.++.+. .++.-+|+++.|++++|.+..... ...+++
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~n-----La~L~~ 330 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQN-----LAELPQ 330 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehh-----hhhccc
Confidence 111111111111111111122233356788888888877764 366677888888888888765433 233388
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 322 (524)
|+.|||++|.++ ++..+-.++ .++++|.+++|.+... ..+..+.+|..||+++|++... -...++++|-|+++.
T Consensus 331 L~~LDLS~N~Ls--~~~Gwh~KL-GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 331 LQLLDLSGNLLA--ECVGWHLKL-GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ceEeecccchhH--hhhhhHhhh-cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 888888888873 333333333 3888888888888632 4567788888899999888732 234678888999999
Q ss_pred ccCCCCCCch
Q 009835 323 LPYNKLSGDL 332 (524)
Q Consensus 323 Ls~n~l~~~~ 332 (524)
|.+|.+.+.+
T Consensus 406 L~~NPl~~~v 415 (490)
T KOG1259|consen 406 LTGNPLAGSV 415 (490)
T ss_pred hcCCCccccc
Confidence 9999887654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.6e-11 Score=106.75 Aligned_cols=128 Identities=33% Similarity=0.339 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCcccc-CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccc-c
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALL-KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPF-Q 161 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~-~ 161 (524)
+.++|+|.++ .++. + +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++.. ++.+ .
T Consensus 20 ~~~~L~L~~n--------~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGN--------QIST-I-ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDK 85 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHH
T ss_pred cccccccccc--------cccc-c-cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHH
Confidence 5788999985 4442 2 3455 578999999999999874 3578899999999999999865 3344 4
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCC-chHhhhcccCCCEEEeeCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~L~~n 225 (524)
.+++|++|++++|+|.+......+..+++|++|++.+|+++.... -...+..+|+|+.||-..-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 689999999999999998888889999999999999999987643 2456788999999987643
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=4.9e-10 Score=122.62 Aligned_cols=105 Identities=33% Similarity=0.368 Sum_probs=49.9
Q ss_pred CCCEEEccCCC--CCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 116 DLRHLDLSNNH--FGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 116 ~L~~L~Ls~n~--l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+|++|-+.+|. +... ...+|..++.|+.|||++|.-.+.+|..++++.+|++|+++++.+..+| ..+.+++.|.+
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP--~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP--SGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc--hHHHHHHhhhe
Confidence 45555555553 2222 2333455555555555555555555555555555555555555554333 33555555555
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCC
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 225 (524)
|++..+...... +.....+.+|++|.+...
T Consensus 623 Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccc--cchhhhcccccEEEeecc
Confidence 555544322221 223334555555555443
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=6.4e-11 Score=121.18 Aligned_cols=129 Identities=28% Similarity=0.288 Sum_probs=66.1
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCc
Q 009835 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR 192 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 192 (524)
.+..++.+++..|.+.. +-..+..+++|+.|++..|.+..... .+..+++|++|++++|.|..+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc---hhhccchh
Confidence 34455555566665554 23345556666666666665553321 14556666666666666654443 44455566
Q ss_pred EEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC
Q 009835 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL 254 (524)
Q Consensus 193 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l 254 (524)
.|++++|.++... .+..++.|+.+++++|.+....+. ..... .+++.+++.+|.+
T Consensus 144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~--~~~~~-~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEND--ELSEL-ISLEELDLGGNSI 198 (414)
T ss_pred hheeccCcchhcc----CCccchhhhcccCCcchhhhhhhh--hhhhc-cchHHHhccCCch
Confidence 6666666655543 233355555555555555443331 01122 4555555555554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=2.6e-09 Score=117.03 Aligned_cols=284 Identities=22% Similarity=0.164 Sum_probs=169.9
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC--CCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT--SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHL 188 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~--~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 188 (524)
..+....+...+.+|.+.. ++.... .+.|++|-+..|. +....++.|..++.|++|||++|.-. ..-|..++.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~--~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~L 594 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH--IAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGEL 594 (889)
T ss_pred ccchhheeEEEEeccchhh--ccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhh
Confidence 3344677888888887765 344433 4479999999886 44444455888999999999986532 2334678999
Q ss_pred CCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCC-CCCchhhhcc
Q 009835 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS-SVYPWLFNLS 267 (524)
Q Consensus 189 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~ 267 (524)
-+|++|++++..+...| ..+.++++|.+|++..+......+ .....+++|++|.+........ .....+ ...
T Consensus 595 i~LryL~L~~t~I~~LP---~~l~~Lk~L~~Lnl~~~~~l~~~~---~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~L 667 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLP---SGLGNLKKLIYLNLEVTGRLESIP---GILLELQSLRVLRLPRSALSNDKLLLKEL-ENL 667 (889)
T ss_pred hhhhcccccCCCccccc---hHHHHHHhhheecccccccccccc---chhhhcccccEEEeeccccccchhhHHhh-hcc
Confidence 99999999999988764 699999999999999887655554 3444349999999977653211 122222 222
Q ss_pred ccccEEEeeccccccccchhhhcccccc----eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLR----FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
.+|+.+....... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+...............
T Consensus 668 e~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~ 744 (889)
T KOG4658|consen 668 EHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL 744 (889)
T ss_pred cchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh
Confidence 2555555533322 1111222333333 3333333333 4455678889999999999988654332211111000
Q ss_pred CCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeee
Q 009835 344 TMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
.++++..+...++.....+....-.++|+.|.+..+.....+......+..++.+-+..+.+.+.
T Consensus 745 ~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 745 CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 01123333333322221111123457888888888776655555556666666655666655544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=5.3e-10 Score=114.42 Aligned_cols=203 Identities=28% Similarity=0.323 Sum_probs=140.9
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcC
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLS 186 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 186 (524)
+-..+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|+... .+..++.|+.|++++|.+..+.. +.
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~---~~ 159 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG---LE 159 (414)
T ss_pred hhcccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC---Cc
Confidence 44558889999999999999987 4454888999999999999998764 46778889999999999987665 66
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhc
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNL 266 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 266 (524)
.+++|+.+++++|.+...... . ...+.+++.+.+.+|.+...... .....+..+++..|.+.. + ..+...
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~-----~~~~~l~~~~l~~n~i~~--~-~~l~~~ 229 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGL-----DLLKKLVLLSLLDNKISK--L-EGLNEL 229 (414)
T ss_pred cchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccch-----HHHHHHHHhhccccccee--c-cCcccc
Confidence 799999999999999887521 1 58899999999999988765442 111455556778887733 1 111111
Q ss_pred c-ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 267 S-RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 267 ~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
. .+|+.+++++|.+. ..+..+..+..+..|++.+|.+...- .+...+.+..+....|.+.
T Consensus 230 ~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 230 VMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred hhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 1 02677777777776 23344555666667777666665321 1233344444555555443
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.3e-10 Score=106.78 Aligned_cols=111 Identities=25% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc
Q 009835 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244 (524)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 244 (524)
.|++|||+...|+.......+..|++|+.|.+.++++.+.. ...+++-.+|+.|+++.+.--.......-+.++ +.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc-s~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC-SRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhh-hhH
Confidence 36666666555543222233455666666666666655442 345556666666666655322111111112222 556
Q ss_pred cEEEccCCCCCCCCCCchhhhccccccEEEeecc
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN 278 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 278 (524)
..|+++.+.+....+...+.+..++|+.|+++++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 6666666655442333333344445555555554
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-11 Score=109.86 Aligned_cols=183 Identities=22% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCCEEEccCCCCCc-cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCE
Q 009835 141 RLRYLNLSCGTSLL-KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKT 219 (524)
Q Consensus 141 ~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 219 (524)
.|++|||++..++. .+-.-+..+.+|+.|.|.++++.+ +....+++-.+|+.|+++.+.--.....--.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35555555444432 112223455555556665555542 2223455555666666655432211111234556666666
Q ss_pred EEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCC-CCCCCchhhhccccccEEEeeccc-cccccchhhhcccccceE
Q 009835 220 LVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLP-SSSVYPWLFNLSRNIQYLNLGFNS-LQGSIPEAFQLMVSLRFL 297 (524)
Q Consensus 220 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 297 (524)
|++++|.+...... .......++|+.|+++++.-. +..-.+.+..-+++|.+|||++|. ++......+-.++.|++|
T Consensus 265 LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 66666665433321 122333367777777765320 012233445556688888888874 444445567778888998
Q ss_pred eecCcccccccchh---hcCCCCCCEEEccCCC
Q 009835 298 YLTSNELEGGIPKF---FGKMCSLNRLCLPYNK 327 (524)
Q Consensus 298 ~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~ 327 (524)
.++.|.. .+|.. +...|+|.+||+.++-
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 8888864 45554 4567889999988773
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.2e-09 Score=76.82 Aligned_cols=60 Identities=30% Similarity=0.429 Sum_probs=51.0
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
|+|++|++++|+++...+. |.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3788888888888877765 88889999999999999877778889999999999999875
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=6.4e-09 Score=75.25 Aligned_cols=60 Identities=32% Similarity=0.419 Sum_probs=42.5
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 667777777777755556677777777777777777766666777777777777777753
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.71 E-value=1.1e-08 Score=93.11 Aligned_cols=172 Identities=17% Similarity=0.089 Sum_probs=87.9
Q ss_pred cCCCCCCcEEEccCCCCCCC--CCchHhhhcccCCCEEEeeCCCCCCCCCCch-----------hhhcccCcccEEEccC
Q 009835 185 LSHLSSLRHLDLSYINLTKS--SDWFQVVAKLRSLKTLVLHSCALPPINPSSI-----------WHFNLSTSIETLDLSD 251 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~~~~~L~~L~L~~ 251 (524)
+.+|+.|+..+||+|.+... +....-+++-+.|++|.+++|.+.......+ ...+. +.|++.+...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEecc
Confidence 45666666666666665543 2223445566677777777776543322211 11122 6777777777
Q ss_pred CCCCCCCCCchh----hhccccccEEEeeccccccccc-----hhhhcccccceEeecCccccccc----chhhcCCCCC
Q 009835 252 NNLPSSSVYPWL----FNLSRNIQYLNLGFNSLQGSIP-----EAFQLMVSLRFLYLTSNELEGGI----PKFFGKMCSL 318 (524)
Q Consensus 252 n~l~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L 318 (524)
|++.. .+... +..-.+|+.+.+..|.|..... ..+..+.+|+.|||.+|-++... ...+...+.|
T Consensus 167 NRlen--gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLEN--GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhcc--CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 77622 22211 1222367777777776653211 12234566777777777665322 2233444556
Q ss_pred CEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc
Q 009835 319 NRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359 (524)
Q Consensus 319 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 359 (524)
+.|.+..|-++.....++-.--+-...|+|..|...+|.+.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 67777776666544433322111112334555555555443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=3.4e-09 Score=97.58 Aligned_cols=113 Identities=21% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCcEEEccCCCCCCCCCchhcC-CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLS-HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
.-++.|.+.++.|.+.+....++ .++.++++||.+|.+++..++...+.++|.|+.|+++.|.+...+.. .-... .
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~-~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPL-K 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccc-c
Confidence 34556666666666555544443 56788899999999988877677788899999999999988755442 00222 7
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeecccc
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSL 280 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l 280 (524)
+|++|.|.+..+.= ....++....|.++.|+++.|++
T Consensus 122 nl~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ceEEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccchh
Confidence 88888888877743 33333444445777777777744
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=1.4e-09 Score=111.08 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=28.9
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
.|...+.+.|.+. .+...+.-++.|+.|+|++|+++... .+..++.|++|||++|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence 3444455555554 33444444555555555555555322 4455555555555555544
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.60 E-value=6.9e-08 Score=63.97 Aligned_cols=41 Identities=51% Similarity=1.016 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCcccceEeC
Q 009835 38 DEEREALLTFKQSLV-DEYGVLSSWGKDNDKRDCCKWRGVRCS 79 (524)
Q Consensus 38 ~~~~~~l~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~ 79 (524)
++|++||++||+++. +|.+.+.+|+... +.++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 579999999999999 5668899998311 3799999999995
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=2.7e-09 Score=109.06 Aligned_cols=176 Identities=26% Similarity=0.214 Sum_probs=112.6
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcc-cCCCEEEeeCCC------C---CCCCCCchhhhcccCcccEEEccCCCC
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKL-RSLKTLVLHSCA------L---PPINPSSIWHFNLSTSIETLDLSDNNL 254 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L~~L~L~~n~------l---~~~~~~~~~~~~~~~~L~~L~L~~n~l 254 (524)
+..+.+|++|.+.++.+..... +..+ .+|++|...+.- + .+... ..... ..|...+.+.|.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~G----L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~---ns~~W-n~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKG----LQELRHQLEKLICHNSLDALRHVFASCGGDIS---NSPVW-NKLATASFSYNRL 176 (1096)
T ss_pred eccccceeeEEecCcchhhhhh----hHHHHHhhhhhhhhccHHHHHHHHHHhccccc---cchhh-hhHhhhhcchhhH
Confidence 5667788888888888776432 1111 233333332210 0 01111 00111 5677788888887
Q ss_pred CCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhH
Q 009835 255 PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSE 334 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 334 (524)
...+....+.+.|+.|+|++|+++.. +.+..++.|++|||+.|.+....--...++. |+.|.+++|.++.. .
T Consensus 177 ---~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~ 248 (1096)
T KOG1859|consen 177 ---VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--R 248 (1096)
T ss_pred ---HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--h
Confidence 33455556666899999999999854 3778889999999999998843323334444 88999999877532 2
Q ss_pred HHHhccCCCCCCCccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCc
Q 009835 335 MIQNLSGGCTMNSLEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 335 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~ 382 (524)
.+.++. +|+.||+++|-+.+--. -++.+..|+.|+|.+|.+-
T Consensus 249 gie~Lk------sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 GIENLK------SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHhhh------hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 333433 88888888888775322 2566778888888888875
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=4.4e-08 Score=90.37 Aligned_cols=87 Identities=25% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCCCCEEEccCCCCCCCC-CccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCC
Q 009835 113 KLHDLRHLDLSNNHFGGSP-LPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 191 (524)
.+++++.|||.+|.|++.. +...+.+||+|++|+|+.|.+...+...-..+.+|++|.|.+..+.-......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3455666666666655421 222334566666666665555433211112334555555555444322222233344444
Q ss_pred cEEEccCC
Q 009835 192 RHLDLSYI 199 (524)
Q Consensus 192 ~~L~Ls~n 199 (524)
++|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 44444444
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=2.3e-08 Score=96.42 Aligned_cols=111 Identities=20% Similarity=0.117 Sum_probs=51.2
Q ss_pred ccccceEeecCccc-ccccchhh-cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC-----C
Q 009835 291 MVSLRFLYLTSNEL-EGGIPKFF-GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-----P 363 (524)
Q Consensus 291 l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-----~ 363 (524)
..+|+.|.+++++- +..-...+ .+.+.|+.+++..+..... ..+..+. ...+.|+.+.++++...... .
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls--~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASLS--RNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhhc--cCCchhccCChhhhhhhhhhhhhhhh
Confidence 45555555555542 11111111 1344555555555543211 1232222 12335555555555432211 0
Q ss_pred C-CCCCCCCcEEEccCCcCc-cccchhhhcCCCCCEEECcCCcC
Q 009835 364 D-LGGFSSLKILVLGENRLN-GTIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 364 ~-~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l 405 (524)
. -..+..|+.+.|+++... ...-+.+..++.|+.+++-+++-
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 1 234556677777776543 23344556667777777766643
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=8.4e-08 Score=78.53 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=56.9
Q ss_pred ccEEEeeccccccccchhh---hcccccceEeecCcccccccchhhc-CCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 270 IQYLNLGFNSLQGSIPEAF---QLMVSLRFLYLTSNELEGGIPKFFG-KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
+..++|+.|.+. .+++.. .....|+..+|++|.+. .+|..|. ..+.++.|++++|.+++ +|.+++.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~----- 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMP----- 100 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhH-----
Confidence 444555555443 223222 22333444455555555 3333332 23355555555555553 333344433
Q ss_pred CCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 346 NSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
.|+.|+++.|.+...+..+..+.+|-.|+..+|.+. .+|..+..-+.....++.++++.+..|
T Consensus 101 -aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred -HhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 455555555555433333333455555555555554 333322222222233344455554444
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.22 E-value=2.8e-07 Score=98.71 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=91.6
Q ss_pred CCCCEEEccCCCCCCCCCccccC-CCCCCCEEEccCCCCCc-cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCc
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIG-SLSRLRYLNLSCGTSLL-KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR 192 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 192 (524)
.+|++||+++...-....|..++ .+|.|++|.+++-.+.. .......++++|..||+++++++.+ ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 56777888776543332444444 47788888887655432 2223345677888888888777755 3377777888
Q ss_pred EEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCC---chhhhcccCcccEEEccCCCCCCCCCCchhhhcccc
Q 009835 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPS---SIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269 (524)
Q Consensus 193 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 269 (524)
+|.+.+-.+....+ ...+-.+++|+.||+|.......... -......+|+|+.||.|++.+.. .+.+.+...-++
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~-~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE-EILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH-HHHHHHHHhCcc
Confidence 88777766665443 45666778888888877654433210 01222334777777777766654 333333333334
Q ss_pred ccEEE
Q 009835 270 IQYLN 274 (524)
Q Consensus 270 L~~L~ 274 (524)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 44443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=2.2e-06 Score=75.10 Aligned_cols=109 Identities=27% Similarity=0.313 Sum_probs=80.3
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+.....+||++|.+... ..|..++.|.+|.|.+|+|+.+-|.--.-+++|+.|.|.+|++..++...-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34567788998888653 457778889999999898887777666667889999999998888777777788888888
Q ss_pred EEccCCCCCCCCCc-hHhhhcccCCCEEEeeCC
Q 009835 194 LDLSYINLTKSSDW-FQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 194 L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~n 225 (524)
|.+-+|..+..... .-.+..+++|+.||...-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88888877665221 124556666666666543
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=2.9e-06 Score=77.59 Aligned_cols=220 Identities=17% Similarity=0.134 Sum_probs=110.2
Q ss_pred ccCCCCCcEEEccCCCCCCCCCc---hhcCCCCCCcEEEccCCCCCCCC-C-------chHhhhcccCCCEEEeeCCCCC
Q 009835 160 FQYLSGLVYLHLENSNLFSLGSL---QWLSHLSSLRHLDLSYINLTKSS-D-------WFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 160 ~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~-~-------~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+..+..+..++||+|.|..-... ..+.+-.+|+..++++--..-.. . ...++.+||+|+..+|+.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467788888888877632210 12344567777777654222111 0 2345667788888888888776
Q ss_pred CCCCCch-hhhcccCcccEEEccCCCCCC---CCCCchhhh--------ccccccEEEeeccccccccch-----hhhcc
Q 009835 229 PINPSSI-WHFNLSTSIETLDLSDNNLPS---SSVYPWLFN--------LSRNIQYLNLGFNSLQGSIPE-----AFQLM 291 (524)
Q Consensus 229 ~~~~~~~-~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~~--------~~~~L~~L~Ls~n~l~~~~~~-----~~~~l 291 (524)
...|... .+....+.|++|.+++|.+.. ..+...++. ..|.|+++....|++.. .+. .+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence 5554311 112222677777777777622 111111111 11356666666666642 111 11222
Q ss_pred cccceEeecCcccccc-----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC--
Q 009835 292 VSLRFLYLTSNELEGG-----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-- 364 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-- 364 (524)
.+|+.+.+..|.|... +-..+..+.+|+.|||..|-++-.....++..- |.-+.|++|.+..|-++.....
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchhhccccHHHH
Confidence 4566666666655422 112233456666666666666544333333211 2222456666666555432211
Q ss_pred ---C--CCCCCCcEEEccCCcCc
Q 009835 365 ---L--GGFSSLKILVLGENRLN 382 (524)
Q Consensus 365 ---~--~~l~~L~~L~Ls~N~l~ 382 (524)
| ...|+|+.|-...|...
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhhhhcCCCccccccchhhhc
Confidence 1 12355555555555443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.6e-07 Score=75.70 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=61.2
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
..|+..+|++|.+ ..+|+.+...++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|
T Consensus 53 ~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 5566667777777 4566666666566777777777777 56666777777777777777777 556666667777777
Q ss_pred EccCCCCCCchhH
Q 009835 322 CLPYNKLSGDLSE 334 (524)
Q Consensus 322 ~Ls~n~l~~~~~~ 334 (524)
+..+|.+.....+
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 7777766544444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.4e-06 Score=72.71 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=27.6
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
....+|+++|.+... ..|..++.|..|.+++|+|+...|.--.-+++|..|.|.+|.|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 445555555555421 2344455555555555555544343333334455555555544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=2.2e-06 Score=91.93 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=108.1
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCcccc-CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALL-KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..++.||++|. ..+...-|..++ .+|.|++|.+++-.+..........++++|..||+|+.+++.. ..++
T Consensus 122 ~nL~~LdI~G~-------~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGS-------ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HhhhhcCcccc-------chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 45778888774 133444444554 5899999999998876654556678999999999999988765 6788
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc----hHhhhcccCCCEEEeeCCCCCCCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW----FQVVAKLRSLKTLVLHSCALPPINP 232 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~ 232 (524)
++++|++|.+.+=.+........+.++++|+.||+|.......... .+.-..+|+|+.||.+++.+....-
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 9999999999998888766667788999999999999876655421 1223458999999999888765443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=2.8e-07 Score=89.06 Aligned_cols=267 Identities=17% Similarity=0.087 Sum_probs=135.5
Q ss_pred ccCCCCCCEEEccCCC-CCCCCCccccCCCCCCCEEEccCCC-CCccCCc-cccCCCCCcEEEccCCC-CCCCCCchhcC
Q 009835 111 LLKLHDLRHLDLSNNH-FGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPR-PFQYLSGLVYLHLENSN-LFSLGSLQWLS 186 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 186 (524)
...++++++|++.++. +++...-..-..+++|++|+|..|. ++...-+ --..+++|++|+++.+. +++-+......
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 3456777777777664 2222112222356777777776633 2222222 22356777777777654 33222223345
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC-CCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA-LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
+++.++.+.+.++.-.+...+...-+.+..+..+++..|. +++... ..+......|+.|+.+++...+......+..
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 5666666655554322222112222334445555555543 222211 1222333667777777665433244445555
Q ss_pred ccccccEEEeeccc-cccccchhh-hcccccceEeecCcccccc--cchhhcCCCCCCEEEccCCCCC-CchhHHHHhcc
Q 009835 266 LSRNIQYLNLGFNS-LQGSIPEAF-QLMVSLRFLYLTSNELEGG--IPKFFGKMCSLNRLCLPYNKLS-GDLSEMIQNLS 340 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 340 (524)
..++|+.|.++.++ ++..--..+ .+.+.|+.+++.++..... +...-.+++.|+.|.++++... +.....+..
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~-- 395 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS-- 395 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh--
Confidence 55677777777775 332222222 2456777777777654321 2222235677777777777543 221111211
Q ss_pred CCCCCCCccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcC
Q 009835 341 GGCTMNSLEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRL 381 (524)
Q Consensus 341 ~~~~~~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l 381 (524)
..+.+..|+.+.|+++....... .+..+++|+.+++-+++-
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 12445577777777776553221 256677777777777643
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=5.3e-05 Score=75.28 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=89.2
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCC-CCCCCCCchhcCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENS-NLFSLGSLQWLSHL 188 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l 188 (524)
.+..+.++++|++++|.++. +|. -..+|++|++++|.-...+|..+ .++|++|++++| .+..++
T Consensus 47 r~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------
Confidence 35556889999999998776 562 23469999998866656667655 358999999988 444222
Q ss_pred CCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccc
Q 009835 189 SSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSR 268 (524)
Q Consensus 189 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 268 (524)
.+|+.|+++.+.......+|. +|+.|.+.++........ . ..++++|++|++++|.. ...|+. ++.
T Consensus 112 ~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~l--p-~~LPsSLk~L~Is~c~~--i~LP~~---LP~ 177 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARI--D-NLISPSLKTLSLTGCSN--IILPEK---LPE 177 (426)
T ss_pred cccceEEeCCCCCcccccCcc------hHhheecccccccccccc--c-cccCCcccEEEecCCCc--ccCccc---ccc
Confidence 468888887766544332222 466777644321110000 0 12347899999998876 233332 345
Q ss_pred cccEEEeeccc
Q 009835 269 NIQYLNLGFNS 279 (524)
Q Consensus 269 ~L~~L~Ls~n~ 279 (524)
+|+.|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 89999998764
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.90 E-value=4.9e-06 Score=76.11 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=48.5
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCC--CCCccCCccccCCCCCcEEEccCCCCCCCCCchh
Q 009835 107 ISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG--TSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQW 184 (524)
Q Consensus 107 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 184 (524)
+..-.-.+..|+.|++.+..++.. ..+..|++|++|.++.| ++.+.++.....+++|++|++++|++..+.....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 444444555666666666655542 23445666777777766 4444444444445666666666666554333333
Q ss_pred cCCCCCCcEEEccCCCCC
Q 009835 185 LSHLSSLRHLDLSYINLT 202 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~ 202 (524)
+..+.+|..|++.+|..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 344444444444444433
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.8e-05 Score=52.51 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=18.4
Q ss_pred ccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 293 SLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 293 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.6e-05 Score=52.75 Aligned_cols=36 Identities=42% Similarity=0.538 Sum_probs=18.3
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCC
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSL 153 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~ 153 (524)
+|++|++++|+|+. +|..+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555554 4444555555555555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.75 E-value=1.4e-05 Score=73.10 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=61.9
Q ss_pred cccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCc-hhcCCCCCCcEEEccCCCCCCCCCchHhhh
Q 009835 134 EFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL-QWLSHLSSLRHLDLSYINLTKSSDWFQVVA 212 (524)
Q Consensus 134 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 212 (524)
.....+..|+.|++.+..++.. ..|-.+++|++|.++.|.......+ .....+++|++|++++|.+..... ...+.
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~ 113 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLK 113 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhh
Confidence 3334455666666665555433 2355677778888887743321221 223345777777777777765432 34556
Q ss_pred cccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEE
Q 009835 213 KLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLD 248 (524)
Q Consensus 213 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 248 (524)
.+.+|..|++.+|..+...-.....+.++++|++||
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666667777766665543332233444445554444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=1.9e-06 Score=79.14 Aligned_cols=103 Identities=25% Similarity=0.247 Sum_probs=80.6
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+.+.+.|+.-++.+.++ ..+.+|+.|+.|.|+-|.|+..- .+..+++|++|.|..|.|.++.....+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45677788888888775 45677899999999989887654 47788999999999999998888888889999999
Q ss_pred EEccCCCCCCCCC---chHhhhcccCCCEEE
Q 009835 194 LDLSYINLTKSSD---WFQVVAKLRSLKTLV 221 (524)
Q Consensus 194 L~Ls~n~l~~~~~---~~~~l~~l~~L~~L~ 221 (524)
|.|..|.-.+... -...+.-+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988765521 123566677777775
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00018 Score=71.55 Aligned_cols=137 Identities=16% Similarity=0.276 Sum_probs=85.8
Q ss_pred hhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeecc-ccccccchhh
Q 009835 210 VVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFN-SLQGSIPEAF 288 (524)
Q Consensus 210 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~ 288 (524)
.+..+.+++.|++++|.++..+ ..+.+|++|+++++.--. .+|..+ +++|++|++++| .+. .+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-------~LP~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~Cs~L~-sLP--- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-------VLPNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHCPEIS-GLP--- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-------CCCCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCccccc-ccc---
Confidence 3456789999999999776653 234789999998754322 444432 458999999988 444 444
Q ss_pred hcccccceEeecCcccc--cccchhhcCCCCCCEEEccCCC-CCC-chhHHHHhccCCCCCCCccEEEcCCCCCccCCCC
Q 009835 289 QLMVSLRFLYLTSNELE--GGIPKFFGKMCSLNRLCLPYNK-LSG-DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
.+|+.|+++.+... +.+|. +|+.|.+.+++ ... ..+.. +| ++|++|++++|.....++.
T Consensus 112 ---~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~---LP-----sSLk~L~Is~c~~i~LP~~ 174 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL---IS-----PSLKTLSLTGCSNIILPEK 174 (426)
T ss_pred ---cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc---cC-----CcccEEEecCCCcccCccc
Confidence 35777888766543 12332 56677775432 110 11111 22 3799999998886643333
Q ss_pred CCCCCCCcEEEccCCc
Q 009835 365 LGGFSSLKILVLGENR 380 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~ 380 (524)
+. .+|+.|.++.|.
T Consensus 175 LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 175 LP--ESLQSITLHIEQ 188 (426)
T ss_pred cc--ccCcEEEecccc
Confidence 33 588889888763
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0015 Score=54.85 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=20.5
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPY 325 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 325 (524)
+|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+.+.+..
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 455555442 233233334444545555555443 3333333445554555555543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.89 E-value=0.00022 Score=74.70 Aligned_cols=176 Identities=23% Similarity=0.138 Sum_probs=78.2
Q ss_pred CCCCCEEEccCCCCCcc--CCccccCCCCCcEEEccCC-C-CCCCC--CchhcCCCCCCcEEEccCCC-CCCCCCchHhh
Q 009835 139 LSRLRYLNLSCGTSLLK--VPRPFQYLSGLVYLHLENS-N-LFSLG--SLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVV 211 (524)
Q Consensus 139 l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n-~-l~~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l 211 (524)
++.|+.|.+..+.-... .-.....+++|+.|+++++ . +...+ .......+++|+.|+++++. +++.. ...+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~--l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG--LSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh--HHHH
Confidence 45555555554433222 1123345566666666542 1 11000 11223445666666666665 33331 2222
Q ss_pred h-cccCCCEEEeeCCC-CCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh
Q 009835 212 A-KLRSLKTLVLHSCA-LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ 289 (524)
Q Consensus 212 ~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 289 (524)
. .+++|++|.+.++. +++..-. .+....+.|++|+++.+..........+...+++++.|.+....-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~--~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLV--SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHH--HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 2 26667777665555 3332221 333334667777777665422111122223344555544322211
Q ss_pred cccccceEeecCcccc---cccchhhcCCCCCCEEEccCCCC
Q 009835 290 LMVSLRFLYLTSNELE---GGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 290 ~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
++.++.+.+.+.... ......+..++.++.+.+..+..
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 333444443332221 12223345666777777766653
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=5.8e-05 Score=69.58 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCC
Q 009835 139 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLK 218 (524)
Q Consensus 139 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 218 (524)
+.+.+.|++-++.+.++ ....+++.|++|.|+-|.|+++.. +..|++|++|+|..|.|.+..+ ..-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhh
Confidence 45566777777776643 224577888888888888776654 6778888888888888777654 45677778888
Q ss_pred EEEeeCCCCCCCCCCch--hhhcccCcccEEE
Q 009835 219 TLVLHSCALPPINPSSI--WHFNLSTSIETLD 248 (524)
Q Consensus 219 ~L~L~~n~l~~~~~~~~--~~~~~~~~L~~L~ 248 (524)
.|.|..|.-.+..+... .....+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887776655444211 1223346666665
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.72 E-value=0.00037 Score=73.00 Aligned_cols=179 Identities=21% Similarity=0.108 Sum_probs=99.4
Q ss_pred CCCCCcEEEccCCCCC-CCCCchhcCCCCCCcEEEccCC-C-CCCCC-CchHhhhcccCCCEEEeeCCC-CCCCCCCchh
Q 009835 162 YLSGLVYLHLENSNLF-SLGSLQWLSHLSSLRHLDLSYI-N-LTKSS-DWFQVVAKLRSLKTLVLHSCA-LPPINPSSIW 236 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n-~-l~~~~-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 236 (524)
.++.|+.|.+..+.-. ..........+++|++|+++++ . ..... ........+++|+.|+++++. +++..-. .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~--~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS--A 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH--H
Confidence 4688888888876433 2222345667888888888873 1 11111 012344566888888888887 4433322 3
Q ss_pred hhcccCcccEEEccCCC-CCCCCCCchhhhccccccEEEeeccccccc--cchhhhcccccceEeecCcccccccchhhc
Q 009835 237 HFNLSTSIETLDLSDNN-LPSSSVYPWLFNLSRNIQYLNLGFNSLQGS--IPEAFQLMVSLRFLYLTSNELEGGIPKFFG 313 (524)
Q Consensus 237 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 313 (524)
+....++|++|.+.++. +++ .....+....++|++|+++.+..... +.....++++|+.|.+....-
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 33334788888877776 555 44455556666788888887765311 223344466666655433221
Q ss_pred CCCCCCEEEccCCCCCC---chhHHHHhccCCCCCCCccEEEcCCCCCc
Q 009835 314 KMCSLNRLCLPYNKLSG---DLSEMIQNLSGGCTMNSLEGVCLEGNDIT 359 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 359 (524)
++.++.+.+....... ....... .++.++.+.+..+...
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~------~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILR------SCPKLTDLSLSYCGIS 375 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHh------cCCCcchhhhhhhhcc
Confidence 3445555444432211 1111122 2347777777776633
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.48 E-value=0.0076 Score=50.51 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=46.1
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.|..+++|+.+.+.. .+... -...|..+++|+.+++..+ +.......|.++++|+.+.+.+ .+..++. ..|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccc
Confidence 455566666666653 34332 3445666666666666543 4444444566666666666654 3332332 3455666
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+|+.+++..+ +.... ...+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~--~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIG--SSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEH--TTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEc--hhhhcCC-CceEEEECC
Confidence 6666666543 33332 1245555 666666554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.38 E-value=3.7e-05 Score=79.16 Aligned_cols=189 Identities=29% Similarity=0.280 Sum_probs=108.7
Q ss_pred CCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCCCCccCCc----cccCC-CCCcEEEccCCCCCCCCCc---hh
Q 009835 116 DLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGTSLLKVPR----PFQYL-SGLVYLHLENSNLFSLGSL---QW 184 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~~~p~----~~~~l-~~L~~L~L~~n~l~~~~~~---~~ 184 (524)
.+..|.|.+|.+.... +...+...+.|+.|++++|.+.+.--. .+... ..|++|++..|.++..... +.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777788888776652 224455677788888888877632211 22232 4567777777776643322 33
Q ss_pred cCCCCCCcEEEccCCCCCCC--CCchHhhh----cccCCCEEEeeCCCCCCCCCC--chhhhcccCc-ccEEEccCCCCC
Q 009835 185 LSHLSSLRHLDLSYINLTKS--SDWFQVVA----KLRSLKTLVLHSCALPPINPS--SIWHFNLSTS-IETLDLSDNNLP 255 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~-L~~L~L~~n~l~ 255 (524)
+.....++.++++.|.+... ......+. ...++++|++.+|.++...-. ...+... +. +..|++..|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~-~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG-ESLLRELDLASNKLG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc-chhhHHHHHHhcCcc
Confidence 44567778888888877533 11123333 366778888888776622111 0011122 33 556788888774
Q ss_pred CCCCC----chhhhccccccEEEeecccccccc----chhhhcccccceEeecCccccc
Q 009835 256 SSSVY----PWLFNLSRNIQYLNLGFNSLQGSI----PEAFQLMVSLRFLYLTSNELEG 306 (524)
Q Consensus 256 ~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~ 306 (524)
+ ... +.+......++.++++.|.++... ...+..++.++.|.+++|.+..
T Consensus 247 d-~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 D-VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred h-HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 211 122222135678888888877543 3344556678888888887764
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.86 E-value=0.00056 Score=70.53 Aligned_cols=41 Identities=39% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCCcEEEccCCCCCCCCCc---hhcCCCCCCcEEEccCCCCCCC
Q 009835 164 SGLVYLHLENSNLFSLGSL---QWLSHLSSLRHLDLSYINLTKS 204 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~ 204 (524)
..+..|.|.+|.+...+.. ..+.....|+.|++++|.+.+.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~ 130 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE 130 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH
Confidence 3477788888877654322 2345666777777777777643
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.82 E-value=0.011 Score=32.53 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=8.4
Q ss_pred CcEEEccCCcCccccchhh
Q 009835 371 LKILVLGENRLNGTIDKSL 389 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~ 389 (524)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344433
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.48 E-value=0.021 Score=31.36 Aligned_cols=18 Identities=44% Similarity=0.768 Sum_probs=8.3
Q ss_pred cceEeecCcccccccchhh
Q 009835 294 LRFLYLTSNELEGGIPKFF 312 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l 312 (524)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.00 E-value=0.15 Score=25.91 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=3.1
Q ss_pred CcEEEccCCc
Q 009835 371 LKILVLGENR 380 (524)
Q Consensus 371 L~~L~Ls~N~ 380 (524)
|++|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 77
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.50 E-value=0.22 Score=42.04 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=25.2
Q ss_pred ceehhhHHHHHHHHHHHHhhhhcccccchhHHHHhhcccceeEeeehhHHHhh
Q 009835 467 GFYVGLILGFFVGFWGVCGTLMLNRSWRHGYYNFLTGMKDWLYVTAALNIAKL 519 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (524)
.+++++++|+.+++++++++++|+++.|++--.|++--...++..++-+..+|
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvvtay~~n~~~~~ 101 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSNKLTKW 101 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEEEEEcCchHHHH
Confidence 36666666665544444333333222222223466655555555444444443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.01 E-value=0.19 Score=28.07 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=8.4
Q ss_pred CCCCEEEccCCCCCCchhH
Q 009835 316 CSLNRLCLPYNKLSGDLSE 334 (524)
Q Consensus 316 ~~L~~L~Ls~n~l~~~~~~ 334 (524)
++|++|+|++|.+++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4455555555555444333
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=0.2 Score=44.70 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=31.9
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhc-CCCCCCEEEccCC-CCCCchhHHHHh
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFG-KMCSLNRLCLPYN-KLSGDLSEMIQN 338 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~~~ 338 (524)
.++.++-++..|..+.-+.+..++.++.|.+.++.-.+. --+-++ -.++|+.|+|++| +|++..-..+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence 455566666555544444555555555555555532211 001111 1245555555555 344433344443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.28 E-value=0.58 Score=26.63 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCCC
Q 009835 317 SLNRLCLPYNKLSG 330 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~ 330 (524)
+|++|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.28 E-value=0.58 Score=26.63 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCCC
Q 009835 317 SLNRLCLPYNKLSG 330 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~ 330 (524)
+|++|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444443
No 82
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=87.03 E-value=0.59 Score=29.16 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=8.4
Q ss_pred eehhhHHHHHHHHHHHHh
Q 009835 468 FYVGLILGFFVGFWGVCG 485 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (524)
+++++++|+++.+++++.
T Consensus 8 IIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFY 25 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445554444444433
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.97 E-value=0.042 Score=49.87 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=62.8
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
...+.||++.|++ ......+.... .+..|+++.|.+. ..|..++....+..+++.+|..+ ..|.+++..+.++++
T Consensus 42 kr~tvld~~s~r~--vn~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 42 KRVTVLDLSSNRL--VNLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ceeeeehhhhhHH--HhhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 6777888888876 33333333333 7888888888887 67888888888888888888887 778888888889988
Q ss_pred EccCCCCC
Q 009835 322 CLPYNKLS 329 (524)
Q Consensus 322 ~Ls~n~l~ 329 (524)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888754
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.91 E-value=0.19 Score=28.07 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=7.2
Q ss_pred CCCcEEEccCCcCccc
Q 009835 369 SSLKILVLGENRLNGT 384 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~~~ 384 (524)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.76 E-value=0.081 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=18.9
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 226 (524)
.++.+|-++..+.... ...+..++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHH--HHHHhccchhhhheecccc
Confidence 4566666666555442 3345555555555555543
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.18 E-value=3.4 Score=41.85 Aligned_cols=62 Identities=19% Similarity=0.061 Sum_probs=33.2
Q ss_pred CCCEEEccCCCCCccCCccccC---CCCCcEEEccCCCCCCC--CCchhcCCCCCCcEEEccCCCCC
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQY---LSGLVYLHLENSNLFSL--GSLQWLSHLSSLRHLDLSYINLT 202 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~---l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~ 202 (524)
.+.+++|+.|.....+|..+.. -..++.++.+...+.-. -..-..+.-++|+..+++.|...
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 4677777777766666654432 23456666665544311 11112334456777777666543
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.87 E-value=0.75 Score=26.15 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=7.5
Q ss_pred CCCcEEEccCCcCc
Q 009835 369 SSLKILVLGENRLN 382 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~ 382 (524)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.87 E-value=0.75 Score=26.15 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=7.5
Q ss_pred CCCcEEEccCCcCc
Q 009835 369 SSLKILVLGENRLN 382 (524)
Q Consensus 369 ~~L~~L~Ls~N~l~ 382 (524)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 89
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=85.23 E-value=0.43 Score=30.33 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=13.0
Q ss_pred ceehhhHHHHHHHHHHHHhhhhc
Q 009835 467 GFYVGLILGFFVGFWGVCGTLML 489 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~ 489 (524)
.+.+++++.+++++++++.++++
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhhe
Confidence 45666666666655555555543
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.76 E-value=0.055 Score=49.12 Aligned_cols=35 Identities=6% Similarity=-0.174 Sum_probs=16.9
Q ss_pred ccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCc
Q 009835 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~ 382 (524)
+..+++..|..+..+-+++..+.++.+++..|.+.
T Consensus 90 ~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 90 TVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 34444444444433334555555555555555543
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=80.28 E-value=0.62 Score=41.64 Aligned_cols=29 Identities=3% Similarity=0.140 Sum_probs=19.8
Q ss_pred hcceehhhHHHHHHHHHHHHhhhhccccc
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLMLNRSW 493 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
...|++++++|++++++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 44577788888877777776666665444
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.49 E-value=8.7 Score=39.03 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=11.9
Q ss_pred CCCCEEEccCCCCCccCCccc
Q 009835 140 SRLRYLNLSCGTSLLKVPRPF 160 (524)
Q Consensus 140 ~~L~~L~L~~n~~~~~~p~~~ 160 (524)
+.+++++++.|.+....|-.+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 446666666666655544433
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=74.35 E-value=1.1 Score=35.21 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=13.9
Q ss_pred ceehhhHHHHHHHHHHHHhhhhccc
Q 009835 467 GFYVGLILGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
..++++++++++++.+++++++|++
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w~f 90 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCWWF 90 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhhee
Confidence 4566666666655555555554433
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.85 E-value=1.8 Score=35.48 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=10.4
Q ss_pred eehhhHHHHHHHHHHHHhhh
Q 009835 468 FYVGLILGFFVGFWGVCGTL 487 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~ 487 (524)
.++++++|++++++++++++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHH
Confidence 44555566555555444433
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.53 E-value=3.6 Score=23.94 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=12.5
Q ss_pred CCCCEEEccCCCCCCchhHHH
Q 009835 316 CSLNRLCLPYNKLSGDLSEMI 336 (524)
Q Consensus 316 ~~L~~L~Ls~n~l~~~~~~~~ 336 (524)
++|++|||++|.+.......+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456777777777665444433
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.84 E-value=3 Score=23.88 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=6.9
Q ss_pred CCCcEEEccCCCCC
Q 009835 164 SGLVYLHLENSNLF 177 (524)
Q Consensus 164 ~~L~~L~L~~n~l~ 177 (524)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.53 E-value=3.1 Score=42.95 Aligned_cols=36 Identities=36% Similarity=0.463 Sum_probs=15.3
Q ss_pred CCCcEEEccCCCCCCCCCchhcC-CCCCCcEEEccCC
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLS-HLSSLRHLDLSYI 199 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n 199 (524)
+.+..++|++|++..+.....+. ..++|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44444445555444333322221 2344455555544
No 98
>PF15102 TMEM154: TMEM154 protein family
Probab=68.73 E-value=3.9 Score=34.47 Aligned_cols=8 Identities=13% Similarity=0.190 Sum_probs=3.8
Q ss_pred hcccccch
Q 009835 488 MLNRSWRH 495 (524)
Q Consensus 488 ~~~~~~~~ 495 (524)
+++||||.
T Consensus 80 ~~~kRkr~ 87 (146)
T PF15102_consen 80 IYYKRKRT 87 (146)
T ss_pred eEEeeccc
Confidence 34455543
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.32 E-value=2.6 Score=43.51 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=19.3
Q ss_pred CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCC
Q 009835 187 HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 225 (524)
+.+.+..+.|++|++.....+..--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555666655554332223334455555555555
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=65.72 E-value=3.7 Score=50.57 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=28.7
Q ss_pred EccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC
Q 009835 375 VLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 375 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 412 (524)
||++|+|+...+..|..+++|+.|+|++|+|.|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 57778887666667777888888888888888777653
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.71 E-value=4.1 Score=23.30 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=6.1
Q ss_pred CCcEEEccCCcCc
Q 009835 370 SLKILVLGENRLN 382 (524)
Q Consensus 370 ~L~~L~Ls~N~l~ 382 (524)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 102
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=64.45 E-value=4 Score=39.91 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.5
Q ss_pred CEEECc
Q 009835 396 ESLSLG 401 (524)
Q Consensus 396 ~~L~l~ 401 (524)
+.+.+.
T Consensus 231 q~i~lt 236 (306)
T PF01299_consen 231 QSINLT 236 (306)
T ss_pred CEEEec
Confidence 344443
No 103
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=61.56 E-value=5.8 Score=24.87 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=16.3
Q ss_pred eehhhHHHHHHHHHHHHhhhhc
Q 009835 468 FYVGLILGFFVGFWGVCGTLML 489 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ 489 (524)
..+++++++++++.+++.++++
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 4578888888888777766654
No 104
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=59.36 E-value=7.8 Score=28.85 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=10.5
Q ss_pred ehhhHHHHHHHHHHHHhhhhccc
Q 009835 469 YVGLILGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
++++++|+++++++++++++++|
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~r 25 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFR 25 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCT
T ss_pred EehHHHHHHHHHHhheeEEEEEe
Confidence 34445555544444444444433
No 105
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=56.79 E-value=3.4 Score=29.32 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHHHH
Q 009835 468 FYVGLILGFFVGFWGVC 484 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~ 484 (524)
++++.++|+++++++++
T Consensus 14 vIaG~Vvgll~ailLIl 30 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLIL 30 (64)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 106
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=56.06 E-value=4 Score=33.19 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcccccchhHH
Q 009835 474 LGFFVGFWGVCGTLMLNRSWRHGYY 498 (524)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (524)
.++++++.++.++++|+|++|++.|
T Consensus 86 l~v~lVl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 86 LSVVLVLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhccccC
Confidence 3333444444466677776666655
No 107
>PRK00523 hypothetical protein; Provisional
Probab=50.08 E-value=12 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHhhhhcccccchhHH
Q 009835 470 VGLILGFFVGFWGVCGTLMLNRSWRHGYY 498 (524)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (524)
++++++++.+++++++-+++-|++-..|+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554444443
No 108
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=49.92 E-value=8.3 Score=29.56 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=18.1
Q ss_pred hcceehhhHHHHHHHHHHHHhhhhcccccc
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLMLNRSWR 494 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
.+|.+++...|++++++++..+++++.||+
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 356666666666666666555555555554
No 109
>PRK01844 hypothetical protein; Provisional
Probab=48.32 E-value=13 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhhhhcccccchhH
Q 009835 472 LILGFFVGFWGVCGTLMLNRSWRHGY 497 (524)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
++++++.+++++++.+++-|++-..|
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555544443333
No 110
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.52 E-value=20 Score=20.22 Aligned_cols=12 Identities=25% Similarity=0.058 Sum_probs=7.0
Q ss_pred CCCCEEEccCCC
Q 009835 316 CSLNRLCLPYNK 327 (524)
Q Consensus 316 ~~L~~L~Ls~n~ 327 (524)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 111
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=44.15 E-value=11 Score=38.27 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.6
Q ss_pred hcceehhhHHHHHHHHHHHHhhhhccc
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
....|++|.|++||+|..+|+|+.||+
T Consensus 365 stgaIaGIsvavvvvVgglvGfLcWwf 391 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLVGFLCWWF 391 (397)
T ss_pred cccceeeeeehhHHHHHHHHHHHhhhe
Confidence 445788888888888988999887754
No 112
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.36 E-value=13 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=21.0
Q ss_pred chhcceehhhHHHHHHHHHHHHhhhhcccc
Q 009835 463 FMTLGFYVGLILGFFVGFWGVCGTLMLNRS 492 (524)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
...+.+.|++.+++++++++++.+++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecc
Confidence 356789999988888776666655555443
No 113
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=42.09 E-value=8.4 Score=36.91 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhcc
Q 009835 470 VGLILGFFVGFWGVCGTLMLN 490 (524)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~ 490 (524)
.++++++++++.+++++++|+
T Consensus 151 paVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 151 PAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333333333444444444444
No 114
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=41.34 E-value=5.6 Score=31.68 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHhhhhcccccchhHHHHhhc
Q 009835 481 WGVCGTLMLNRSWRHGYYNFLTG 503 (524)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
+++++++|+ |+|.+|....++
T Consensus 39 LLliGCWYc--kRRSGYk~L~~k 59 (118)
T PF14991_consen 39 LLLIGCWYC--KRRSGYKTLRDK 59 (118)
T ss_dssp -----------------------
T ss_pred HHHHhheee--eecchhhhhhhc
Confidence 334444333 334455544443
No 115
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.59 E-value=37 Score=22.75 Aligned_cols=9 Identities=0% Similarity=-0.355 Sum_probs=3.6
Q ss_pred hhhhccccc
Q 009835 485 GTLMLNRSW 493 (524)
Q Consensus 485 ~~~~~~~~~ 493 (524)
+++.|+++.
T Consensus 26 ~~w~~~~~~ 34 (49)
T PF05545_consen 26 VIWAYRPRN 34 (49)
T ss_pred HHHHHcccc
Confidence 333444433
No 116
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=38.42 E-value=20 Score=27.44 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=7.9
Q ss_pred eEeeehhHHHhhhc
Q 009835 508 LYVTAALNIAKLQK 521 (524)
Q Consensus 508 ~~~~~~~~~~~~~~ 521 (524)
-|.++-.+..+++|
T Consensus 39 pykrahesieklsn 52 (126)
T PF13120_consen 39 PYKRAHESIEKLSN 52 (126)
T ss_pred hhhHHHhHHHHhcc
Confidence 35556566666654
No 117
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=36.78 E-value=11 Score=32.24 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=0.0
Q ss_pred hcceehhhHHHHHHHHHHHHhhhh-cccccchhH
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLM-LNRSWRHGY 497 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 497 (524)
....++++++|+++++.++.++++ +.||++-||
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp ----------------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 345677888888887776665554 344444444
No 118
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=35.41 E-value=24 Score=31.67 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=12.0
Q ss_pred ceehhhHHHHHHHHHHHHhhhhccccc
Q 009835 467 GFYVGLILGFFVGFWGVCGTLMLNRSW 493 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+++++=+++++++++++++++++|+.
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~ 185 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKK 185 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeeccc
Confidence 344444444444444444444444433
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.25 E-value=26 Score=28.87 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=16.3
Q ss_pred hhcceehhhHHHHHHHHHHHHhhhhccccc
Q 009835 464 MTLGFYVGLILGFFVGFWGVCGTLMLNRSW 493 (524)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
....|++++++|++. +++++.+++.|+++
T Consensus 65 ~i~~Ii~gv~aGvIg-~Illi~y~irR~~K 93 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIG-IILLISYCIRRLRK 93 (122)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHHHS-
T ss_pred ceeehhHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 345677777776654 44566666644443
No 120
>PF15102 TMEM154: TMEM154 protein family
Probab=33.88 E-value=30 Score=29.31 Aligned_cols=25 Identities=4% Similarity=0.091 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHhhhhcccccchh
Q 009835 472 LILGFFVGFWGVCGTLMLNRSWRHG 496 (524)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
+++..++++++++.++++..+.||+
T Consensus 61 IlIP~VLLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 61 ILIPLVLLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred EeHHHHHHHHHHHHHHHheeEEeec
Confidence 3444444444444555565555443
No 121
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=33.45 E-value=39 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=15.3
Q ss_pred ceehhhHHHHHHHHHHHHhhhhcccc
Q 009835 467 GFYVGLILGFFVGFWGVCGTLMLNRS 492 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
+..++++.++++++...+.=+||+++
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 45566666666666665555555443
No 122
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=31.73 E-value=16 Score=29.26 Aligned_cols=10 Identities=20% Similarity=-0.144 Sum_probs=0.0
Q ss_pred ceeEeeehhH
Q 009835 506 DWLYVTAALN 515 (524)
Q Consensus 506 ~~~~~~~~~~ 515 (524)
|..|...+++
T Consensus 50 RSGYk~L~~k 59 (118)
T PF14991_consen 50 RSGYKTLRDK 59 (118)
T ss_dssp ----------
T ss_pred cchhhhhhhc
Confidence 4455555443
No 123
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=31.36 E-value=31 Score=30.65 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=7.3
Q ss_pred ceehhhHHHHHHHHH
Q 009835 467 GFYVGLILGFFVGFW 481 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~ 481 (524)
.++++++++++++++
T Consensus 79 ~iivgvi~~Vi~Iv~ 93 (179)
T PF13908_consen 79 GIIVGVICGVIAIVV 93 (179)
T ss_pred eeeeehhhHHHHHHH
Confidence 455555555444433
No 124
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.36 E-value=40 Score=35.78 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=15.2
Q ss_pred chhcceehhhHHHHHHHHHHHHhh
Q 009835 463 FMTLGFYVGLILGFFVGFWGVCGT 486 (524)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~ 486 (524)
..+.||++++++.+++++++++++
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil 289 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIIL 289 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHH
Confidence 346788888877666655544433
No 125
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.40 E-value=34 Score=21.79 Aligned_cols=6 Identities=33% Similarity=1.215 Sum_probs=2.8
Q ss_pred cccccc
Q 009835 489 LNRSWR 494 (524)
Q Consensus 489 ~~~~~~ 494 (524)
.+|+|.
T Consensus 29 iYRKw~ 34 (43)
T PF08114_consen 29 IYRKWQ 34 (43)
T ss_pred HHHHHH
Confidence 345553
No 126
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=25.83 E-value=33 Score=28.98 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhcccccc---hhHHHHhhccc
Q 009835 478 VGFWGVCGTLMLNRSWR---HGYYNFLTGMK 505 (524)
Q Consensus 478 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 505 (524)
+++++.+|++++|+++. ....+|++++.
T Consensus 21 lLl~cgiGcvwhwkhr~~~~ftLPkflqRRs 51 (158)
T PF11770_consen 21 LLLLCGIGCVWHWKHRDSTRFTLPKFLQRRS 51 (158)
T ss_pred HHHHHhcceEEEeeccCccccchHHHHHhhh
Confidence 34444456665544332 34566665543
No 127
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.72 E-value=50 Score=28.98 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=15.1
Q ss_pred hcceehhhHHHHHHHHHHHHhhhhccc
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
.+.+.+.+++|++++.++.+.+.+..|
T Consensus 22 IlaF~vSm~iGLviG~li~~LltwlSR 48 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLTWLSR 48 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666776666555555444433
No 128
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.80 E-value=43 Score=26.27 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=11.4
Q ss_pred hcceehhhHHHHHHHHHHHHhhhhcccc
Q 009835 465 TLGFYVGLILGFFVGFWGVCGTLMLNRS 492 (524)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
...+.+++++++.+++.+++ .++++||
T Consensus 68 iagi~vg~~~~v~~lv~~l~-w~f~~r~ 94 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC-WWFVCRG 94 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh-heeEEee
Confidence 44455554544433333333 3344443
No 129
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=23.56 E-value=27 Score=35.98 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 009835 58 LSSWGKDNDKRDCC 71 (524)
Q Consensus 58 ~~~W~~~~~~~~~c 71 (524)
..+|.+ ...++|
T Consensus 9 ~~~W~~--l~~~~~ 20 (439)
T PF02480_consen 9 TETWTF--LPTPCC 20 (439)
T ss_dssp --------------
T ss_pred eeeEEE--ecCCCC
Confidence 456764 334444
No 130
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.34 E-value=1.2e+02 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=17.7
Q ss_pred chhcceehhhHHHHHHHHHHHHhhhhcc-cccchhHH
Q 009835 463 FMTLGFYVGLILGFFVGFWGVCGTLMLN-RSWRHGYY 498 (524)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 498 (524)
...++++.|++++++|+++++ ++-+++ +..+.+|-
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v-~vR~CRq~~~k~g~Q 73 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVV-LVRYCRQSPHKKGYQ 73 (221)
T ss_pred eeeeeeecchhhhHHHHHHHH-HHHHHhhccccchhh
Confidence 444556666555555544444 445444 44444443
No 131
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=21.27 E-value=1.7e+02 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.223 Sum_probs=11.4
Q ss_pred eehhhHHHHHH-HHHHHHhhhhccccc
Q 009835 468 FYVGLILGFFV-GFWGVCGTLMLNRSW 493 (524)
Q Consensus 468 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 493 (524)
.++..++|.++ +...+++..+..+|.
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~ 110 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRC 110 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444554444 334444444443333
No 132
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=21.18 E-value=59 Score=32.39 Aligned_cols=28 Identities=4% Similarity=0.024 Sum_probs=15.1
Q ss_pred ceehhhHHHHHHHHHHHHhhhhcccccc
Q 009835 467 GFYVGLILGFFVGFWGVCGTLMLNRSWR 494 (524)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
+|++++++.++|++++.+++|++.||+|
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 4555555655555555555555555444
No 133
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=21.08 E-value=1.7e+02 Score=28.36 Aligned_cols=11 Identities=9% Similarity=-0.016 Sum_probs=4.6
Q ss_pred HHhhhhccccc
Q 009835 483 VCGTLMLNRSW 493 (524)
Q Consensus 483 ~~~~~~~~~~~ 493 (524)
+++.++|+|-|
T Consensus 215 iva~~cW~Rlq 225 (341)
T PF06809_consen 215 IVAGYCWYRLQ 225 (341)
T ss_pred HHhhheEEEec
Confidence 33444444443
No 134
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.00 E-value=76 Score=23.06 Aligned_cols=7 Identities=14% Similarity=0.601 Sum_probs=2.6
Q ss_pred HHhhhhc
Q 009835 483 VCGTLML 489 (524)
Q Consensus 483 ~~~~~~~ 489 (524)
+++-+++
T Consensus 18 ~~~G~fi 24 (71)
T COG3763 18 LIGGFFI 24 (71)
T ss_pred HHHHHHH
Confidence 3333333
No 135
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.92 E-value=65 Score=30.99 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=5.1
Q ss_pred ceehhhHHHHHH
Q 009835 467 GFYVGLILGFFV 478 (524)
Q Consensus 467 ~~~~~~~~~~~~ 478 (524)
++.+++.+++.+
T Consensus 229 VVlIslAiALG~ 240 (281)
T PF12768_consen 229 VVLISLAIALGT 240 (281)
T ss_pred EEEEehHHHHHH
Confidence 344444444443
No 136
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.43 E-value=59 Score=27.76 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.3
Q ss_pred hhcccc
Q 009835 487 LMLNRS 492 (524)
Q Consensus 487 ~~~~~~ 492 (524)
+++|+-
T Consensus 138 ~~~r~~ 143 (145)
T PF10661_consen 138 VVLRKV 143 (145)
T ss_pred HHHHHh
Confidence 334433
No 137
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=20.30 E-value=1.2e+02 Score=27.47 Aligned_cols=13 Identities=15% Similarity=-0.013 Sum_probs=4.9
Q ss_pred HHHHHHhhhhccc
Q 009835 479 GFWGVCGTLMLNR 491 (524)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (524)
++++..+++++.|
T Consensus 115 a~~~~~~Y~~~~R 127 (202)
T PF06365_consen 115 AILLGAGYCCHQR 127 (202)
T ss_pred HHHHHHHHHhhhh
Confidence 3333333344433
No 138
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.27 E-value=68 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=14.3
Q ss_pred eehhhHHHHHHHHHHHHhhhhccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
|+++.++.+++++.++++.+++.|
T Consensus 20 IfLItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666666666666665544
Done!