Query 009835
Match_columns 524
No_of_seqs 617 out of 5553
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.1E-47 1.4E-51 418.0 35.1 173 268-441 490-751 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.2E-43 1.1E-47 345.8 22.1 304 35-438 2-312 (313)
3 4eco_A Uncharacterized protein 100.0 2.6E-41 9E-46 363.7 22.5 367 35-427 26-547 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 2.8E-39 9.5E-44 354.5 27.7 362 33-427 263-787 (876)
5 3v47_A TOLL-like receptor 5B a 100.0 1.1E-38 3.9E-43 330.3 27.4 348 67-433 4-412 (455)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-38 5.3E-43 353.3 27.5 148 71-229 14-162 (844)
7 2id5_A Lingo-1, leucine rich r 100.0 3.8E-37 1.3E-41 320.8 23.2 338 73-433 13-360 (477)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-36 1.1E-40 323.3 27.4 163 269-433 377-562 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 7E-36 2.4E-40 316.9 26.0 348 70-432 3-513 (549)
10 3v47_A TOLL-like receptor 5B a 100.0 6.7E-36 2.3E-40 309.5 22.9 315 82-415 53-417 (455)
11 2id5_A Lingo-1, leucine rich r 100.0 7.1E-35 2.4E-39 303.7 25.3 328 75-431 6-335 (477)
12 3o6n_A APL1; leucine-rich repe 100.0 5.3E-35 1.8E-39 296.6 22.7 310 83-431 45-354 (390)
13 3rgz_A Protein brassinosteroid 100.0 4.2E-35 1.4E-39 322.4 22.4 293 100-408 377-742 (768)
14 4eco_A Uncharacterized protein 100.0 6.7E-35 2.3E-39 313.8 22.8 322 82-430 205-601 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 9E-35 3.1E-39 306.3 22.7 321 83-431 21-483 (520)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-34 4.7E-39 307.7 23.9 321 83-431 52-512 (562)
17 2z63_A TOLL-like receptor 4, v 100.0 2.8E-34 9.6E-39 305.9 25.9 159 269-433 348-535 (570)
18 3t6q_A CD180 antigen; protein- 100.0 6.7E-34 2.3E-38 305.3 27.7 327 83-427 33-436 (606)
19 3oja_B Anopheles plasmodium-re 100.0 2.8E-34 9.5E-39 307.2 24.5 309 84-431 52-360 (597)
20 3t6q_A CD180 antigen; protein- 100.0 1.8E-34 6.3E-39 309.7 23.1 308 84-412 255-566 (606)
21 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-33 8.7E-38 304.9 28.7 314 83-410 25-422 (680)
22 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-33 3.9E-38 303.4 25.0 164 242-413 399-565 (606)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-33 6.3E-38 303.2 26.6 331 83-431 52-582 (635)
24 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-33 8.6E-38 304.9 27.1 324 102-433 259-626 (680)
25 4ecn_A Leucine-rich repeat pro 100.0 9.5E-34 3.2E-38 310.7 22.6 326 82-428 447-818 (876)
26 3o6n_A APL1; leucine-rich repe 100.0 2.9E-33 9.8E-38 283.8 22.5 309 83-432 69-377 (390)
27 2z63_A TOLL-like receptor 4, v 100.0 2.5E-33 8.6E-38 298.5 20.2 141 269-415 397-540 (570)
28 2z7x_B TOLL-like receptor 1, v 100.0 2E-32 6.8E-37 288.4 26.5 311 86-429 3-457 (520)
29 3oja_B Anopheles plasmodium-re 100.0 5.3E-33 1.8E-37 297.2 22.4 310 83-433 75-384 (597)
30 4fmz_A Internalin; leucine ric 100.0 9.3E-32 3.2E-36 268.3 29.6 303 82-428 43-345 (347)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.6E-32 2.2E-36 287.0 28.2 311 86-429 34-486 (562)
32 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-32 4.6E-37 291.6 19.9 316 82-411 49-515 (549)
33 4fcg_A Uncharacterized protein 100.0 6.2E-33 2.1E-37 274.2 15.7 273 34-328 22-313 (328)
34 1o6v_A Internalin A; bacterial 100.0 3.1E-31 1.1E-35 275.2 28.6 304 83-430 68-389 (466)
35 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-32 1.5E-36 301.5 21.6 288 115-430 266-561 (844)
36 1xku_A Decorin; proteoglycan, 100.0 6.3E-31 2.1E-35 260.4 27.3 275 106-404 45-330 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-31 1.2E-35 262.5 22.0 274 106-404 47-331 (332)
38 4fmz_A Internalin; leucine ric 100.0 5E-30 1.7E-34 255.7 28.4 281 82-406 65-346 (347)
39 1o6v_A Internalin A; bacterial 100.0 7.1E-30 2.4E-34 265.0 30.2 303 83-428 46-365 (466)
40 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-30 4.3E-35 281.0 23.1 314 83-412 76-586 (635)
41 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-30 9.1E-35 256.1 20.9 287 71-380 33-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 2E-29 6.8E-34 249.6 25.5 270 116-407 32-307 (330)
43 3bz5_A Internalin-J, INLJ; leu 100.0 2E-29 6.7E-34 260.1 25.4 280 83-407 42-353 (457)
44 2z80_A TOLL-like receptor 2, v 100.0 3.4E-29 1.2E-33 250.3 20.6 287 67-411 26-319 (353)
45 3bz5_A Internalin-J, INLJ; leu 100.0 9.3E-29 3.2E-33 255.1 23.5 263 106-410 33-303 (457)
46 2z80_A TOLL-like receptor 2, v 100.0 1.7E-29 5.7E-34 252.6 17.1 279 112-432 28-317 (353)
47 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-28 5.8E-33 260.7 20.1 286 57-411 11-302 (622)
48 2z66_A Variable lymphocyte rec 100.0 6.6E-29 2.2E-33 243.1 14.2 253 118-411 10-266 (306)
49 1jl5_A Outer protein YOPM; leu 100.0 2.8E-27 9.7E-32 243.8 25.6 249 115-407 131-410 (454)
50 2z66_A Variable lymphocyte rec 100.0 2.2E-28 7.7E-33 239.3 14.9 276 87-412 11-293 (306)
51 3zyi_A Leucine-rich repeat-con 100.0 5.6E-27 1.9E-31 242.2 23.1 239 106-410 68-307 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 5.9E-27 2E-31 241.2 23.1 240 106-411 57-297 (440)
53 3zyi_A Leucine-rich repeat-con 100.0 3.1E-27 1.1E-31 244.1 20.9 227 83-328 75-302 (452)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-27 5.4E-32 230.8 16.6 209 86-338 14-223 (285)
55 3zyj_A Leucine-rich repeat-con 99.9 3.8E-27 1.3E-31 242.6 20.3 228 83-329 64-292 (440)
56 1jl5_A Outer protein YOPM; leu 99.9 4.1E-26 1.4E-30 235.1 26.6 201 83-330 91-291 (454)
57 1ozn_A Reticulon 4 receptor; N 99.9 3.1E-27 1.1E-31 228.8 16.5 231 190-433 33-265 (285)
58 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-28 1.3E-32 238.4 9.8 227 83-380 76-302 (313)
59 4fcg_A Uncharacterized protein 99.9 1E-26 3.5E-31 229.6 18.9 235 113-382 79-314 (328)
60 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-29 5.4E-34 262.0 -1.6 332 84-427 29-409 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-28 4.5E-33 242.2 4.0 257 102-410 21-280 (317)
62 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-28 5.1E-33 254.7 0.9 308 83-408 56-413 (461)
63 3oja_A Leucine-rich immune mol 99.9 6.4E-27 2.2E-31 243.4 11.8 233 141-400 35-269 (487)
64 1wwl_A Monocyte differentiatio 99.9 3.1E-28 1.1E-32 238.9 1.2 251 111-407 39-310 (312)
65 1wwl_A Monocyte differentiatio 99.9 8E-28 2.7E-32 236.0 2.0 258 135-429 38-309 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-26 7.3E-31 226.4 9.3 238 118-407 13-251 (317)
67 3oja_A Leucine-rich immune mol 99.9 2.2E-26 7.5E-31 239.4 8.4 218 162-406 32-250 (487)
68 2o6q_A Variable lymphocyte rec 99.9 2.5E-24 8.5E-29 206.6 20.8 218 68-330 2-219 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-23 5.1E-28 222.7 28.0 258 115-430 40-298 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 7.4E-24 2.5E-28 204.0 18.7 215 164-413 28-244 (276)
71 2z62_A TOLL-like receptor 4, v 99.9 2.9E-23 1E-27 199.8 19.9 211 115-384 28-239 (276)
72 2o6q_A Variable lymphocyte rec 99.9 5.4E-23 1.9E-27 197.2 20.3 185 216-411 38-223 (270)
73 3goz_A Leucine-rich repeat-con 99.9 1.4E-24 4.7E-29 217.6 7.3 260 120-384 3-299 (362)
74 3rfs_A Internalin B, repeat mo 99.9 2.2E-23 7.7E-28 200.1 14.0 131 269-412 110-241 (272)
75 3goz_A Leucine-rich repeat-con 99.9 7.3E-24 2.5E-28 212.3 9.6 259 144-410 2-301 (362)
76 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.5E-28 199.8 12.9 185 212-411 38-223 (272)
77 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 7.9E-27 194.7 19.7 204 110-329 5-208 (290)
78 2ast_B S-phase kinase-associat 99.9 3.4E-24 1.2E-28 212.4 5.2 267 69-364 35-311 (336)
79 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.3E-27 195.4 17.0 206 185-410 6-212 (290)
80 2ca6_A RAN GTPase-activating p 99.9 9.2E-24 3.1E-28 213.5 4.3 42 368-409 273-319 (386)
81 3ogk_B Coronatine-insensitive 99.9 1.2E-23 4.1E-28 224.8 5.4 307 83-408 164-528 (592)
82 2ca6_A RAN GTPase-activating p 99.9 3.4E-23 1.2E-27 209.3 7.5 263 106-386 23-320 (386)
83 3m19_A Variable lymphocyte rec 99.9 6E-22 2.1E-26 187.8 14.8 211 216-441 15-232 (251)
84 2ast_B S-phase kinase-associat 99.9 2.6E-23 8.9E-28 206.0 5.2 252 117-412 49-312 (336)
85 2xwt_C Thyrotropin receptor; s 99.9 1E-21 3.6E-26 184.7 14.9 196 116-326 32-236 (239)
86 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.9E-26 190.4 16.7 193 111-328 37-229 (308)
87 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.9E-27 197.8 9.1 231 113-360 62-308 (310)
88 3m19_A Variable lymphocyte rec 99.9 4.8E-21 1.6E-25 181.5 18.5 192 69-283 3-194 (251)
89 1h6u_A Internalin H; cell adhe 99.9 2.6E-21 8.8E-26 189.1 16.6 194 160-406 37-230 (308)
90 3ogk_B Coronatine-insensitive 99.9 3.2E-23 1.1E-27 221.6 2.5 325 84-427 139-524 (592)
91 4glp_A Monocyte differentiatio 99.9 3.6E-22 1.2E-26 195.5 9.7 232 83-330 64-308 (310)
92 4ay9_X Follicle-stimulating ho 99.9 4.4E-21 1.5E-25 191.1 16.2 230 106-379 23-256 (350)
93 2xwt_C Thyrotropin receptor; s 99.9 5.6E-21 1.9E-25 179.7 14.5 198 83-303 31-237 (239)
94 2p1m_B Transport inhibitor res 99.8 2.9E-23 9.8E-28 222.0 -2.5 108 83-199 105-221 (594)
95 3cvr_A Invasion plasmid antige 99.8 1.2E-20 4.2E-25 197.9 14.6 205 67-340 39-254 (571)
96 2o6s_A Variable lymphocyte rec 99.8 5.8E-20 2E-24 168.9 15.9 163 114-292 27-189 (208)
97 4ay9_X Follicle-stimulating ho 99.8 4.4E-20 1.5E-24 183.8 15.4 235 71-326 9-256 (350)
98 2p1m_B Transport inhibitor res 99.8 6.8E-22 2.3E-26 211.3 1.8 304 83-406 130-519 (594)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-20 9E-25 172.6 11.2 158 244-412 13-172 (220)
100 2v9t_B SLIT homolog 2 protein 99.8 3.6E-20 1.2E-24 171.7 10.4 157 244-411 13-170 (220)
101 3cvr_A Invasion plasmid antige 99.8 5.7E-19 2E-23 185.3 20.3 143 188-364 99-248 (571)
102 2o6s_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 160.8 16.5 181 118-317 10-190 (208)
103 3e6j_A Variable lymphocyte rec 99.8 7.8E-19 2.7E-23 163.8 13.5 159 242-411 19-177 (229)
104 3e6j_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 157.7 18.1 160 66-256 14-173 (229)
105 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.3E-23 166.2 14.9 171 112-305 43-213 (291)
106 1h6t_A Internalin B; cell adhe 99.8 4.9E-18 1.7E-22 164.3 16.4 173 211-407 42-214 (291)
107 2xot_A Amphoterin-induced prot 99.8 9.4E-19 3.2E-23 174.9 11.3 179 218-410 21-206 (361)
108 1m9s_A Internalin B; cell inva 99.8 4E-18 1.4E-22 180.8 16.0 174 111-307 39-212 (605)
109 2xot_A Amphoterin-induced prot 99.8 1.2E-18 3.9E-23 174.3 11.1 177 244-431 20-204 (361)
110 4ezg_A Putative uncharacterize 99.8 9.1E-18 3.1E-22 152.7 14.1 152 242-407 44-195 (197)
111 2v9t_B SLIT homolog 2 protein 99.7 4.2E-18 1.4E-22 157.7 11.9 153 270-431 13-167 (220)
112 1m9s_A Internalin B; cell inva 99.7 3.6E-18 1.2E-22 181.1 12.4 193 141-363 22-214 (605)
113 1w8a_A SLIT protein; signaling 99.7 2E-18 6.8E-23 156.4 8.3 155 271-434 11-167 (192)
114 1dce_A Protein (RAB geranylger 99.7 3.1E-21 1E-25 203.5 -13.1 216 137-400 346-567 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-17 5.3E-22 153.9 13.4 156 218-386 14-170 (220)
116 4b8c_D Glucose-repressible alc 99.7 1.2E-18 4.1E-23 189.3 5.1 262 36-329 129-404 (727)
117 4ezg_A Putative uncharacterize 99.7 6.5E-17 2.2E-21 147.0 13.7 154 212-383 41-195 (197)
118 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.2E-22 149.2 10.0 180 244-438 10-192 (192)
119 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.7E-22 164.3 7.7 263 114-400 48-328 (329)
120 1xeu_A Internalin C; cellular 99.7 3E-17 1E-21 156.3 8.3 147 242-408 41-187 (263)
121 2wfh_A SLIT homolog 2 protein 99.7 7.4E-17 2.5E-21 146.0 8.6 131 271-411 13-144 (193)
122 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.9E-21 139.4 11.5 131 268-406 24-160 (168)
123 4b8c_D Glucose-repressible alc 99.7 3.7E-17 1.3E-21 177.6 6.6 181 209-408 218-406 (727)
124 1xeu_A Internalin C; cellular 99.7 4.5E-16 1.5E-20 148.2 13.2 150 111-306 37-186 (263)
125 2je0_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 134.8 10.0 127 268-402 17-149 (149)
126 1dce_A Protein (RAB geranylger 99.6 7.2E-19 2.5E-23 185.4 -9.1 192 186-412 346-552 (567)
127 2ell_A Acidic leucine-rich nuc 99.6 7.7E-16 2.6E-20 136.0 10.1 137 83-230 24-162 (168)
128 2o6r_A Variable lymphocyte rec 99.6 1.3E-15 4.3E-20 135.9 11.2 133 270-411 9-142 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 132.3 7.8 130 83-223 17-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 132.0 11.9 129 244-384 12-141 (193)
131 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 129.4 12.0 133 243-386 8-141 (177)
132 3sb4_A Hypothetical leucine ri 99.6 2.8E-15 9.7E-20 147.6 7.1 261 82-376 48-328 (329)
133 4fdw_A Leucine rich hypothetic 99.5 2.3E-13 7.9E-18 137.2 19.1 263 114-404 112-381 (401)
134 4fdw_A Leucine rich hypothetic 99.5 2.4E-13 8.2E-18 137.0 17.9 253 103-382 124-383 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.4E-19 127.7 9.0 127 269-406 20-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 9.8E-19 126.9 8.7 113 110-228 14-126 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 9.8E-16 3.3E-20 139.3 -3.4 131 262-406 43-185 (198)
138 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 121.5 9.9 109 294-411 11-120 (170)
139 2r9u_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 119.0 9.8 107 295-410 15-122 (174)
140 1ds9_A Outer arm dynein; leuci 99.4 1.2E-14 4E-19 132.1 -1.5 135 187-331 16-155 (198)
141 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 115.8 9.7 108 269-385 10-118 (170)
142 3un9_A NLR family member X1; l 99.4 8.1E-14 2.8E-18 139.1 1.2 141 242-385 101-255 (372)
143 2r9u_A Variable lymphocyte rec 99.4 6.3E-12 2.2E-16 111.3 12.7 106 86-204 15-120 (174)
144 3un9_A NLR family member X1; l 99.3 3.6E-13 1.2E-17 134.4 4.8 163 242-407 72-253 (372)
145 4fs7_A Uncharacterized protein 99.3 7.2E-11 2.5E-15 119.1 17.2 122 268-402 253-375 (394)
146 2ifg_A High affinity nerve gro 99.2 1.9E-11 6.6E-16 121.0 11.0 99 102-205 20-119 (347)
147 2ifg_A High affinity nerve gro 99.2 1.2E-11 4.1E-16 122.6 7.7 103 272-383 12-117 (347)
148 4fs7_A Uncharacterized protein 99.1 6.3E-10 2.2E-14 112.1 15.4 268 108-403 64-353 (394)
149 4gt6_A Cell surface protein; l 99.1 2.9E-09 9.9E-14 107.2 20.1 110 285-404 258-368 (394)
150 4gt6_A Cell surface protein; l 99.0 3.5E-09 1.2E-13 106.6 16.6 278 103-405 75-390 (394)
151 2ra8_A Uncharacterized protein 99.0 1.2E-09 4.1E-14 108.0 10.2 153 242-404 172-341 (362)
152 2ra8_A Uncharacterized protein 98.9 2.8E-09 9.6E-14 105.4 8.1 143 262-407 166-321 (362)
153 4h09_A Hypothetical leucine ri 98.8 3.3E-07 1.1E-11 91.6 20.6 285 84-402 47-342 (379)
154 3rw6_A Nuclear RNA export fact 98.7 5.8E-10 2E-14 104.8 -4.5 64 138-202 168-233 (267)
155 1io0_A Tropomodulin; LRR prote 98.7 2.1E-08 7.3E-13 89.4 5.7 118 287-406 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 5.8E-09 2E-13 93.1 -0.8 125 103-227 24-163 (185)
157 4h09_A Hypothetical leucine ri 98.5 8.9E-06 3.1E-10 81.0 19.7 277 83-393 69-356 (379)
158 3rw6_A Nuclear RNA export fact 98.5 1.1E-07 3.8E-12 89.2 4.9 79 314-399 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.9E-11 75.3 3.4 83 115-199 61-149 (176)
160 3e4g_A ATP synthase subunit S, 98.1 3E-06 1E-10 73.8 4.7 13 367-379 137-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 2.4E-05 8.2E-10 69.4 4.5 93 311-405 65-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 5.9E-05 2E-09 66.9 4.6 112 269-382 42-170 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0015 5.3E-08 53.8 7.0 60 349-410 11-72 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0061 2.1E-07 50.1 6.8 56 119-176 12-67 (130)
165 2ks1_B Epidermal growth factor 89.6 0.2 7E-06 31.8 2.3 27 468-494 13-39 (44)
166 2l2t_A Receptor tyrosine-prote 89.0 0.2 6.7E-06 31.8 1.9 27 468-494 12-38 (44)
167 2jwa_A Receptor tyrosine-prote 85.9 0.27 9.4E-06 31.1 1.2 26 468-493 13-38 (44)
168 2l9u_A Receptor tyrosine-prote 81.5 0.52 1.8E-05 27.5 1.0 28 468-495 8-35 (40)
169 2k1k_A Ephrin type-A receptor 78.3 1.2 4E-05 27.3 2.0 19 468-486 12-30 (38)
170 2k9y_A Ephrin type-A receptor 72.3 2.3 8E-05 26.4 2.3 24 468-491 15-38 (41)
171 1iij_A ERBB-2 receptor protein 72.2 0.96 3.3E-05 27.0 0.4 23 470-492 11-33 (35)
172 2lz0_A Uncharacterized protein 57.2 15 0.0005 28.0 4.7 37 135-172 15-51 (100)
173 2l34_A TYRO protein tyrosine k 51.1 9.2 0.00031 22.5 2.0 23 468-490 8-30 (33)
174 2lz0_A Uncharacterized protein 42.5 32 0.0011 26.0 4.5 45 152-198 8-52 (100)
175 2klu_A T-cell surface glycopro 29.8 29 0.001 23.8 2.0 10 473-482 13-22 (70)
176 2llm_A Amyloid beta A4 protein 30.5 16 0.00054 22.8 0.0 23 469-491 19-42 (43)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-47 Score=418.03 Aligned_cols=173 Identities=35% Similarity=0.586 Sum_probs=137.4
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC------
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------ 341 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 341 (524)
++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+.....
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 37888888888888888888888888888888888877777777777777766666666666555543322100
Q ss_pred --------------------------------------------------------------------------------
Q 009835 342 -------------------------------------------------------------------------------- 341 (524)
Q Consensus 342 -------------------------------------------------------------------------------- 341 (524)
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence
Q ss_pred --CCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCccccc
Q 009835 342 --GCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSF 418 (524)
Q Consensus 342 --~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 418 (524)
...+++|+.|+|++|+++|.+|. ++++++|++|||++|+++|.+|..+.++++|++||+++|+++|.+|...++.++
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 01234788888888888887776 888999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCC
Q 009835 419 NASVYAGNPELCGLPLPNKCPDE 441 (524)
Q Consensus 419 ~~~~~~gn~~~C~~~~~~~c~~~ 441 (524)
....+.|||.+||.|.. .|...
T Consensus 730 ~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp CGGGGCSCTEEESTTSC-CCCSC
T ss_pred CHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999886 78654
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.2e-43 Score=345.82 Aligned_cols=304 Identities=31% Similarity=0.491 Sum_probs=228.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc--ccceEeCCCC--CcEEEEEcCCCCCCCCCCCccee--ecC
Q 009835 35 RCIDEEREALLTFKQSLVDEYGVLSSWGKDNDKRDCCK--WRGVRCSNKT--GHVKVLNLRRSDDENSRGTVLKG--TIS 108 (524)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~~--~~~ 108 (524)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |.||+|+... ++|+.|+|+++ .+.+ .+|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~--------~l~~~~~~~ 69 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIP 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEECC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCC--------CccCCcccC
Confidence 589999999999999998776 688997 4778998 9999997654 79999999995 7788 889
Q ss_pred ccccCCCCCCEEEccC-CCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCC
Q 009835 109 PALLKLHDLRHLDLSN-NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSH 187 (524)
Q Consensus 109 ~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 187 (524)
+.+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+.+.+|..|.++++|++|++++|.+....
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------- 141 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL------- 141 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-------
T ss_pred hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-------
Confidence 9999999999999995 888876 8888888888888888888888788877777777777777666554211
Q ss_pred CCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 188 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 188 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
+..+..+ ++|++|++++|.+++ .++..+....
T Consensus 142 --------------------p~~~~~l---------------------------~~L~~L~L~~N~l~~-~~p~~l~~l~ 173 (313)
T 1ogq_A 142 --------------------PPSISSL---------------------------PNLVGITFDGNRISG-AIPDSYGSFS 173 (313)
T ss_dssp --------------------CGGGGGC---------------------------TTCCEEECCSSCCEE-ECCGGGGCCC
T ss_pred --------------------ChHHhcC---------------------------CCCCeEECcCCcccC-cCCHHHhhhh
Confidence 1122233 333333333333322 2333333333
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
++|++|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------------- 233 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL------------------- 233 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-------------------
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-------------------
Confidence 3677777777777766666666665 66666666666666666665555555555555544
Q ss_pred ccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCC
Q 009835 348 LEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNP 427 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~ 427 (524)
++.++.+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|+
T Consensus 234 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 -----------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -----------CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred -----------eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 444444566789999999999999999999999999999999999999999998888999999999999
Q ss_pred CCCCCCCCCCC
Q 009835 428 ELCGLPLPNKC 438 (524)
Q Consensus 428 ~~C~~~~~~~c 438 (524)
++||.|.. .|
T Consensus 303 ~lc~~p~~-~C 312 (313)
T 1ogq_A 303 CLCGSPLP-AC 312 (313)
T ss_dssp EEESTTSS-CC
T ss_pred CccCCCCC-CC
Confidence 99998765 46
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-41 Score=363.72 Aligned_cols=367 Identities=17% Similarity=0.200 Sum_probs=258.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCCCcc---cceEeCCCCCcEEEEEcCCCCCCCCCCCcc
Q 009835 35 RCIDEEREALLTFKQSLVDEYG--------VLSSWGKDNDKRDCCKW---RGVRCSNKTGHVKVLNLRRSDDENSRGTVL 103 (524)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~--------~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l 103 (524)
.....|+.||.++++++.++.. ...+|+ .+.++|.| .||+|+.. +||+.|+|+++ .+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~--------~l 93 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGF--------GA 93 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTS--------CC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCc--------cc
Confidence 3456799999999999875432 123798 57899999 99999754 89999999995 88
Q ss_pred eeecCccccCCCCCCEEEccCCCC--------------------------------------------------------
Q 009835 104 KGTISPALLKLHDLRHLDLSNNHF-------------------------------------------------------- 127 (524)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~Ls~n~l-------------------------------------------------------- 127 (524)
.|.+|++++++++|++|+|++|.+
T Consensus 94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 999999999999999999998843
Q ss_pred ----------------------CCCCCccccCCCCCCCEEEccCCCCCcc-----------------CCcccc--CCCCC
Q 009835 128 ----------------------GGSPLPEFIGSLSRLRYLNLSCGTSLLK-----------------VPRPFQ--YLSGL 166 (524)
Q Consensus 128 ----------------------~~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~~~--~l~~L 166 (524)
++ +|..++++++|++|+|++|.+++. +|..++ ++++|
T Consensus 174 ~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 174 SIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 12 677888999999999999999886 888888 99999
Q ss_pred cEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCC-CCCchHhhhcc------cCCCEEEeeCCCCCCCCCCchhhh
Q 009835 167 VYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKL------RSLKTLVLHSCALPPINPSSIWHF 238 (524)
Q Consensus 167 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~ 238 (524)
++|++++|.+.+. .+..+.++++|++|++++|. +++ . ++..+..+ ++|++|++++|.++ ..|....+.
T Consensus 252 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 252 TDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp CEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 9999999987743 33678889999999999998 765 2 14455555 88888888888887 444211233
Q ss_pred cccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccc-cceEeecCcccccccchhhcCCC-
Q 009835 239 NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS-LRFLYLTSNELEGGIPKFFGKMC- 316 (524)
Q Consensus 239 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~- 316 (524)
.+ ++|++|++++|.+.+ .++ .+.... +|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 328 ~l-~~L~~L~L~~N~l~g-~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 328 KM-KKLGMLECLYNQLEG-KLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp TC-TTCCEEECCSCCCEE-ECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred cC-CCCCEEeCcCCcCcc-chh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 33 778888888887754 555 333333 6666666666665 55555555555 666666666555 4444443332
Q ss_pred -CCCEEEccCCCCCCchhHHHH-------hccC------------------CCCCCCccEEEcCCCCCccCCCC-CCCC-
Q 009835 317 -SLNRLCLPYNKLSGDLSEMIQ-------NLSG------------------GCTMNSLEGVCLEGNDITGPLPD-LGGF- 368 (524)
Q Consensus 317 -~L~~L~Ls~n~l~~~~~~~~~-------~l~~------------------~~~~~~L~~L~Ls~n~l~~~~~~-~~~l- 368 (524)
+|++|++++|.+++..|..+. .++. ...+++|++|++++|+++..++. +...
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 444444444444444433333 1100 00134788888888888854444 3322
Q ss_pred ------CCCcEEEccCCcCccccchhhh--cCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCC
Q 009835 369 ------SSLKILVLGENRLNGTIDKSLS--QLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 369 ------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~ 427 (524)
++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|.. ..+..+....+.+|.
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 38999999999998 6787776 89999999999999998 6653 345666667776554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-39 Score=354.47 Aligned_cols=362 Identities=19% Similarity=0.237 Sum_probs=227.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEeCCCCCcEEEEEcCCCCCC
Q 009835 33 VMRCIDEEREALLTFKQSLVDEYGVLSSWGKDN--DKRDC--CKW------------RGVRCSNKTGHVKVLNLRRSDDE 96 (524)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~ 96 (524)
...+..+|+.||++||+++.+| +|+... ...++ |.| .||+|+. .+||+.|+|+++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 3445678999999999999876 676321 02345 999 9999975 689999999995
Q ss_pred CCCCCcceeecCccccCCCCCCEEEc-cCCCCCCC---------------------------------------------
Q 009835 97 NSRGTVLKGTISPALLKLHDLRHLDL-SNNHFGGS--------------------------------------------- 130 (524)
Q Consensus 97 ~~~~~~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~--------------------------------------------- 130 (524)
++.|.+|++++++++|++|+| ++|.+.+.
T Consensus 334 -----~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 334 -----GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp -----CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred -----CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 788888888888888888888 66643221
Q ss_pred ------------------------------CCccccCCCCCCCEEEccCCCCCc-----------------cCCcccc--
Q 009835 131 ------------------------------PLPEFIGSLSRLRYLNLSCGTSLL-----------------KVPRPFQ-- 161 (524)
Q Consensus 131 ------------------------------~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~~~-- 161 (524)
.+|..++++++|++|+|++|.+++ .+|..++
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 056777888888888888888887 3777776
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCC-CCCchHhhhccc-------CCCEEEeeCCCCCCCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTK-SSDWFQVVAKLR-------SLKTLVLHSCALPPINP 232 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~ 232 (524)
++++|++|+|++|.+.... +..+.++++|++|++++|. +++ . ++..+..++ +|++|++++|.+. ..|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred cCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 8888888888888766433 3667788888888888886 654 1 123344443 6777777777666 333
Q ss_pred CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccc-cceEeecCcccccccchh
Q 009835 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVS-LRFLYLTSNELEGGIPKF 311 (524)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~ 311 (524)
....+..+ ++|++|++++|.+. .+| .+... ++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus 565 ~~~~l~~L-~~L~~L~Ls~N~l~--~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 565 ASASLQKM-VKLGLLDCVHNKVR--HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp CHHHHTTC-TTCCEEECTTSCCC--BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ChhhhhcC-CCCCEEECCCCCcc--cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 10012233 66666666666652 333 33222 25555555555555 45555555555 555555555555 34433
Q ss_pred hcCC-------------------------------CCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCcc
Q 009835 312 FGKM-------------------------------CSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG 360 (524)
Q Consensus 312 l~~l-------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~ 360 (524)
+..+ ++|+.|++++|.++...+..+..++ +|+.|+|++|+++.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~------~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS------PISTIILSNNLMTS 711 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC------CCSEEECCSCCCSC
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC------CCCEEECCCCcCCc
Confidence 3322 2455555555555543333333333 67777777777764
Q ss_pred CCCC-CC-------CCCCCcEEEccCCcCccccchhhh--cCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCC
Q 009835 361 PLPD-LG-------GFSSLKILVLGENRLNGTIDKSLS--QLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 361 ~~~~-~~-------~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~ 427 (524)
.++. +. ++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|.. ..+..+....+.+|+
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 4333 22 1226777777777776 5666665 67777777777777776 4432 334455555555544
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-38 Score=330.33 Aligned_cols=348 Identities=22% Similarity=0.236 Sum_probs=255.9
Q ss_pred CCCCCcccc--eEeCCCC--------CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCcccc
Q 009835 67 KRDCCKWRG--VRCSNKT--------GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFI 136 (524)
Q Consensus 67 ~~~~c~w~g--v~c~~~~--------~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l 136 (524)
..+.|.|.+ +.|+... .+++.|+|+++ .+++..|..+.++++|++|++++|.+.+...+..|
T Consensus 4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECcccc
Confidence 445666665 7776432 57899999995 78888899999999999999999999765246789
Q ss_pred CCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCC-CCchhcCCCCCCcEEEccCCCCCCCCCchHhhhccc
Q 009835 137 GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSL-GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLR 215 (524)
Q Consensus 137 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 215 (524)
.++++|++|+|++|.+.+..|..|+++++|++|++++|.+.+. .....+..+++|++|++++|.+++... ...+.+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~ 154 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMR 154 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCC
Confidence 9999999999999999999999999999999999999998742 222348899999999999999988742 23488999
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch---------hhhccccccEEEeeccccccccch
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW---------LFNLSRNIQYLNLGFNSLQGSIPE 286 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---------~~~~~~~L~~L~Ls~n~l~~~~~~ 286 (524)
+|++|++++|.+.+..+........ .+|+.|++++|.+.+ +++. ++.. ++|++|++++|.+++..|.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~-~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQD--MNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTT-CEEEEEECTTCBCTT--CSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHH
T ss_pred cccEEeCCCCcccccChhhhhcccc-ccccccccccCcccc--cchhhcccccccccccc-ceeeeEecCCCcccccchh
Confidence 9999999999999887753333333 566777777776633 2211 1112 2566677766666655554
Q ss_pred hhhcc---------------------------------------cccceEeecCcccccccchhhcCCCCCCEEEccCCC
Q 009835 287 AFQLM---------------------------------------VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK 327 (524)
Q Consensus 287 ~~~~l---------------------------------------~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 327 (524)
.+... ++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 44322 467777777777777777777777777777777777
Q ss_pred CCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 328 LSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 328 l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
+++..+..+..++ +|++|++++|.+++..+. +..+++|++|+|++|++++..|..+..+++|++|++++|+++
T Consensus 311 l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 311 INKIDDNAFWGLT------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CCEECTTTTTTCT------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccChhHhcCcc------cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 7777666666554 777777777777776655 677777777777777777777777777777777777777777
Q ss_pred eeCCCC-CcccccccccccCCCCCCCCC
Q 009835 407 GKIPLG-TQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 407 ~~~p~~-~~~~~~~~~~~~gn~~~C~~~ 433 (524)
+..+.. ..+..+....+.+|++.|+.+
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 544432 345666667777777777544
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=353.30 Aligned_cols=148 Identities=23% Similarity=0.196 Sum_probs=81.1
Q ss_pred CcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCC
Q 009835 71 CKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCG 150 (524)
Q Consensus 71 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n 150 (524)
|+|..|.+ ...+++.|+|+++ .+++..+..|.++++|++|+|++|...+...|..|.++++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCcCEEECCCC--------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 44555655 4467888888885 5555555556666666666666654433312455555666666666666
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCC-CCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC
Q 009835 151 TSLLKVPRPFQYLSGLVYLHLENSNLFSL-GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP 229 (524)
Q Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 229 (524)
.+.+..|..|+++++|++|+|++|.+.+. +....+.++++|++|++++|.+++... ...+.++++|++|++++|.+.+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCe
Confidence 55555555555556666666655555431 111235555555555555555554421 2345555555555555555443
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=320.82 Aligned_cols=338 Identities=21% Similarity=0.259 Sum_probs=282.6
Q ss_pred ccceEeCCC---------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCC
Q 009835 73 WRGVRCSNK---------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLR 143 (524)
Q Consensus 73 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~ 143 (524)
|..|.|... ..+++.|+|+++ .+++..+..|.++++|++|+|++|.+++. .|..|.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKN--------RIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCC--------ccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCC
Confidence 456777532 246889999985 78888888999999999999999999986 788999999999
Q ss_pred EEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEee
Q 009835 144 YLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLH 223 (524)
Q Consensus 144 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~ 223 (524)
+|+|++|.+.+..+..|.++++|++|+|++|.+..... ..+.++++|++|++++|.+.... +..+..+++|++|+++
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLE 160 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEE
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeC--hhhccCCCCCCEEECC
Confidence 99999999998777789999999999999999986543 56889999999999999998775 3578899999999999
Q ss_pred CCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 224 SCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 224 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
+|.+.+..+. .+..+ ++|+.|++++|.+.+ +++..+...++|+.|++++|.+.+.+|.......+|+.|++++|.
T Consensus 161 ~n~l~~~~~~--~l~~l-~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 161 KCNLTSIPTE--ALSHL-HGLIVLRLRHLNINA--IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp SCCCSSCCHH--HHTTC-TTCCEEEEESCCCCE--ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred CCcCcccChh--Hhccc-CCCcEEeCCCCcCcE--eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 9999877652 33444 999999999999944 444444455599999999998887888777777799999999999
Q ss_pred cccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCc
Q 009835 304 LEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLN 382 (524)
Q Consensus 304 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 382 (524)
+++..+..+..+++|++|+|++|.+++..+..|..++ +|++|+|++|++++..+. +..+++|+.|+|++|+++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccc------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 9966667899999999999999999988777777655 899999999999998776 899999999999999999
Q ss_pred cccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCCCCCCC
Q 009835 383 GTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 383 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~ 433 (524)
+..+..|..+++|+.|++++|++.+.++..+.+.......+.++...|..|
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred eeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 887888899999999999999999887754444444445566777777544
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-36 Score=323.28 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=109.5
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCCCchhHHHHhccC------
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG------ 341 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------ 341 (524)
+|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..++.
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 66666666666553 33445555555555555555554444 34444555555555555544444433332221
Q ss_pred -------------CCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 342 -------------GCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 342 -------------~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
...+++|++|++++|++++.+|. +.++++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE- 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence 12345899999999999888776 888999999999999999888999999999999999999988
Q ss_pred eCCCC-Cccc-ccccccccCCCCCCCCC
Q 009835 408 KIPLG-TQLQ-SFNASVYAGNPELCGLP 433 (524)
Q Consensus 408 ~~p~~-~~~~-~~~~~~~~gn~~~C~~~ 433 (524)
.+|.. ..+. .+....+.+||+.|+.+
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 45543 2333 47778899999999654
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-36 Score=316.89 Aligned_cols=348 Identities=23% Similarity=0.240 Sum_probs=232.1
Q ss_pred CCcccceEeCCC-----------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCC
Q 009835 70 CCKWRGVRCSNK-----------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGS 138 (524)
Q Consensus 70 ~c~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~ 138 (524)
.|.|.|+ |+.. ..+++.|+|+++ .+++..|..+.++++|++|++++|.+++. .|..|.+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence 4778887 7532 247899999995 78888888999999999999999999986 6788999
Q ss_pred CCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCC
Q 009835 139 LSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSL 217 (524)
Q Consensus 139 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L 217 (524)
+++|++|+|++|.+.+..|..|+++++|++|++++|.+...+.+..+.++++|++|++++|. +...+ ...+.++++|
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC--Hhhhhccccc
Confidence 99999999999999988888899999999999999999876655678999999999999998 44433 3478889999
Q ss_pred CEEEeeCCCCCCCCCCchh---------------------hhcccCcccEEEccCCCCCCCCCCc-hh------------
Q 009835 218 KTLVLHSCALPPINPSSIW---------------------HFNLSTSIETLDLSDNNLPSSSVYP-WL------------ 263 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~---------------------~~~~~~~L~~L~L~~n~l~~~~~~~-~~------------ 263 (524)
++|++++|.+.+..+..+. ....+++|++|++++|.+.+..+.+ .+
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 9999999998876554211 1122478888888888875421000 00
Q ss_pred ---------------------------------------------------------------------------hhccc
Q 009835 264 ---------------------------------------------------------------------------FNLSR 268 (524)
Q Consensus 264 ---------------------------------------------------------------------------~~~~~ 268 (524)
....+
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 01112
Q ss_pred cccEEEeeccccccccchhh-hcccccceEeecCcccccccch---hhcCCCCCCEEEccCCCCCCchh--HHHHhccC-
Q 009835 269 NIQYLNLGFNSLQGSIPEAF-QLMVSLRFLYLTSNELEGGIPK---FFGKMCSLNRLCLPYNKLSGDLS--EMIQNLSG- 341 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~- 341 (524)
+|+.|++++|.++ .+|..+ ..+++|++|++++|.+++.+|. .++.+++|++|++++|++++..+ ..+..++.
T Consensus 311 ~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 3444555555444 344443 3566677777777766655432 24556666666666666665432 33444330
Q ss_pred ----------------CCCCCCccEEEcCCCCCccCCCC------------------CCCCCCCcEEEccCCcCccccch
Q 009835 342 ----------------GCTMNSLEGVCLEGNDITGPLPD------------------LGGFSSLKILVLGENRLNGTIDK 387 (524)
Q Consensus 342 ----------------~~~~~~L~~L~Ls~n~l~~~~~~------------------~~~l~~L~~L~Ls~N~l~~~~p~ 387 (524)
...+++|++|++++|.+++.... ...+++|++|+|++|+++ .+|.
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC
Confidence 01122333444444333321111 124566666777777666 4554
Q ss_pred hhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCCCC
Q 009835 388 SLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELCGL 432 (524)
Q Consensus 388 ~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~~ 432 (524)
...+++|++|++++|++++.+|.. ..+..+....+.+|++.|+.
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 356677777777777777666642 34566667778888887753
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.7e-36 Score=309.50 Aligned_cols=315 Identities=24% Similarity=0.254 Sum_probs=260.7
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeec-CccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcc-
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTI-SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRP- 159 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~- 159 (524)
..+++.|+++++ .+.+.+ +..|..+++|++|+|++|.+++. .|..++++++|++|++++|.+.+..|..
T Consensus 53 l~~L~~L~L~~n--------~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 53 LQDLQFLKVEQQ--------TPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp CTTCCEEECCCC--------STTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred CccccEEECcCC--------cccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcc
Confidence 357899999985 666555 56789999999999999999886 7899999999999999999998865555
Q ss_pred -ccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcc--cCCCEEEeeCCCCCCCCCCchh
Q 009835 160 -FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL--RSLKTLVLHSCALPPINPSSIW 236 (524)
Q Consensus 160 -~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~ 236 (524)
|.++++|++|++++|.+........+.++++|++|++++|.+++.. +..+..+ .+|+.|++++|.+.+..+....
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC--EEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC--TTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC--hhhhhccccccccccccccCcccccchhhcc
Confidence 8999999999999999987765455889999999999999998874 2345544 5777777877777665543111
Q ss_pred ------hhcccCcccEEEccCCCCCCCCCCchhhhc--------------------------------------cccccE
Q 009835 237 ------HFNLSTSIETLDLSDNNLPSSSVYPWLFNL--------------------------------------SRNIQY 272 (524)
Q Consensus 237 ------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--------------------------------------~~~L~~ 272 (524)
.+.. ++|++|++++|.+.+ ..+..+... .++|+.
T Consensus 202 ~~~~~~~~~~-~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 202 WEKCGNPFKN-TSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp HHHHCCTTTT-CEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred cccccccccc-ceeeeEecCCCcccc-cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 1223 567777777776643 222222211 147999
Q ss_pred EEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEE
Q 009835 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVC 352 (524)
Q Consensus 273 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 352 (524)
|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..++ +|++|+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~ 353 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD------KLEVLD 353 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT------TCCEEE
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc------cCCEEE
Confidence 99999999998899999999999999999999988899999999999999999999988888888766 999999
Q ss_pred cCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcc
Q 009835 353 LEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQL 415 (524)
Q Consensus 353 Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 415 (524)
+++|++++..|. +..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999998776 999999999999999999877778899999999999999999999965433
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-35 Score=303.68 Aligned_cols=328 Identities=20% Similarity=0.163 Sum_probs=280.2
Q ss_pred ceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCc
Q 009835 75 GVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL 154 (524)
Q Consensus 75 gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~ 154 (524)
+..|.... +.++.++. .++ .+|..+. +++++|+|++|.+++. .+..|.++++|++|+|++|.+.+
T Consensus 6 ~C~C~~~~---~~v~c~~~--------~l~-~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~ 70 (477)
T 2id5_A 6 RCECSAQD---RAVLCHRK--------RFV-AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSA 70 (477)
T ss_dssp TCEEETTT---TEEECCSC--------CCS-SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCE
T ss_pred CCeECCCC---CEEEeCCC--------CcC-cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCE
Confidence 34565322 24566664 343 4565553 5899999999999986 67899999999999999999999
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc
Q 009835 155 KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS 234 (524)
Q Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 234 (524)
..|..|.++++|++|+|++|.+..++. ..+.++++|++|++++|.+.... +..+..+++|++|++++|.+.+..+.
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~- 146 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHR- 146 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCSCCT-TSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTT-
T ss_pred eChhhhhCCccCCEEECCCCcCCccCc-ccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChh-
Confidence 999999999999999999999997664 56889999999999999998774 35789999999999999999887774
Q ss_pred hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcC
Q 009835 235 IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGK 314 (524)
Q Consensus 235 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 314 (524)
.+..+ ++|++|++++|.+. .+++..+...++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.....
T Consensus 147 -~~~~l-~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 147 -AFSGL-NSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp -SSTTC-TTCCEEEEESCCCS--SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred -hccCC-CCCCEEECCCCcCc--ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 34444 99999999999994 566665555669999999999999888888999999999999999988888877777
Q ss_pred CCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC
Q 009835 315 MCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL 393 (524)
Q Consensus 315 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 393 (524)
..+|++|++++|.+++..+..+..++ +|+.|+|++|.+++..+. +..+++|+.|+|++|++++..|..|..++
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLV------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCT------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred CccccEEECcCCcccccCHHHhcCcc------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 78999999999999988778888766 999999999999988776 89999999999999999999999999999
Q ss_pred CCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCCC
Q 009835 394 KLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 394 ~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~ 431 (524)
+|+.|++++|++++..+.. ..+..+..+.+.+||+.|+
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999755432 3456778889999999986
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-35 Score=296.59 Aligned_cols=310 Identities=20% Similarity=0.217 Sum_probs=260.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.++++++ .++...+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..|++
T Consensus 45 ~~l~~l~l~~~--------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp CCCSEEEEESC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEecCC--------chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45677777774 55544444578899999999999999885 6678999999999999999999988999999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.+...+ +..+..+++|++|++++|.+.+... ... +
T Consensus 116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l-~ 186 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDL-----SLI-P 186 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCCG-----GGC-T
T ss_pred CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCcccc-----ccc-c
Confidence 9999999999999997664 55789999999999999998875 3578999999999999999887532 333 8
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+.+. ...++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|++|+
T Consensus 187 ~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp TCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ccceeeccccccccc-------CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEE
Confidence 999999999988542 1234899999999999854 432 357899999999999854 5788999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
+++|.+++..|..+..++ +|++|++++|++++....+..+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus 255 Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQ------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CCSSCCCEEESGGGTTCS------SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred CCCCcCCCcChhHccccc------cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCC
Confidence 999999998888888766 999999999999987666888999999999999998 5677788999999999999
Q ss_pred CcCeeeCCCCCcccccccccccCCCCCCC
Q 009835 403 NSFTGKIPLGTQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 403 N~l~~~~p~~~~~~~~~~~~~~gn~~~C~ 431 (524)
|+++.. | ...+..+....+.+|++.|+
T Consensus 328 N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 328 NSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred Ccccee-C-chhhccCCEEEcCCCCccch
Confidence 999854 4 34567788888999999885
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-35 Score=322.42 Aligned_cols=293 Identities=27% Similarity=0.325 Sum_probs=234.9
Q ss_pred CCcceeecCccccC--CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCC
Q 009835 100 GTVLKGTISPALLK--LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLF 177 (524)
Q Consensus 100 ~~~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (524)
+|.+++.+|+.+.. +++|++|++++|.+++. +|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 34666666666665 67777777777777765 7777888888888888888888888888888888888888888877
Q ss_pred CCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCC
Q 009835 178 SLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSS 257 (524)
Q Consensus 178 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 257 (524)
+.. +..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|. ++..+ ++|++|++++|.+.+
T Consensus 456 ~~~-p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l-~~L~~L~L~~N~l~~- 528 (768)
T 3rgz_A 456 GEI-PQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIPK--WIGRL-ENLAILKLSNNSFSG- 528 (768)
T ss_dssp SCC-CGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCG--GGGGC-TTCCEEECCSSCCEE-
T ss_pred CcC-CHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCEEEccCCccCCcCCh--HHhcC-CCCCEEECCCCcccC-
Confidence 433 356778888888888888887653 35678888888888888888877774 44555 888888888888866
Q ss_pred CCCchhhhccccccEEEeeccccccccchhh-------------------------------------------------
Q 009835 258 SVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF------------------------------------------------- 288 (524)
Q Consensus 258 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~------------------------------------------------- 288 (524)
.+|..+.... +|+.|++++|.++|.+|..+
T Consensus 529 ~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 6676666655 88888888888877666543
Q ss_pred ---------------------hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 289 ---------------------QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 289 ---------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
..+++|+.|++++|+++|.+|..++.+++|+.|+|++|.+++.+|..++.++ +
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~------~ 681 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR------G 681 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT------T
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC------C
Confidence 3356789999999999999999999999999999999999999999999877 9
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeee
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
|+.|+|++|+++|.+|. +.++++|++|++++|+++|.+|.. +.+..+....+.+|+-.+-
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999999999987 999999999999999999999964 3445556667778875543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.7e-35 Score=313.82 Aligned_cols=322 Identities=20% Similarity=0.238 Sum_probs=201.1
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceee-----------------cCcccc--CCCCCCEEEccCCCCCCCCCccccCCCCCC
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGT-----------------ISPALL--KLHDLRHLDLSNNHFGGSPLPEFIGSLSRL 142 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L 142 (524)
..+++.|+|+++ .+++. +|+.++ ++++|++|++++|.+.+. +|..++++++|
T Consensus 205 l~~L~~L~Ls~n--------~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 275 (636)
T 4eco_A 205 LTKLRQFYMGNS--------PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEM 275 (636)
T ss_dssp CTTCCEEEEESC--------CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSC
T ss_pred ccCCCEEECcCC--------ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCC
Confidence 357899999995 67775 999999 999999999999999987 99999999999
Q ss_pred CEEEccCCC-CCc-cCCccccCC------CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCC-CCCCchHhhhc
Q 009835 143 RYLNLSCGT-SLL-KVPRPFQYL------SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT-KSSDWFQVVAK 213 (524)
Q Consensus 143 ~~L~L~~n~-~~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~l~~ 213 (524)
++|++++|. +++ .+|..++++ ++|++|++++|.++.++....+.++++|++|++++|.++ ..+ .+..
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~ 351 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGS 351 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCC
Confidence 999999998 888 888888776 899999999999985553237889999999999999888 333 4455
Q ss_pred ccCCCEEEeeCCCCCCCCCCchhhhcccCc-ccEEEccCCCCCCCCCCchhhhc-cccccEEEeeccccccccchhhh--
Q 009835 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTS-IETLDLSDNNLPSSSVYPWLFNL-SRNIQYLNLGFNSLQGSIPEAFQ-- 289 (524)
Q Consensus 214 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~-- 289 (524)
+++|++|++++|.+.. .|. .+... ++ |++|++++|.+. .+|..+... .++|++|++++|.+++.+|..+.
T Consensus 352 l~~L~~L~L~~N~l~~-lp~--~l~~l-~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 352 EIKLASLNLAYNQITE-IPA--NFCGF-TEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EEEESEEECCSSEEEE-CCT--TSEEE-CTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCCCEEECCCCcccc-ccH--hhhhh-cccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 5555555555555542 221 22333 44 555555555542 233322211 11344444444444444444333
Q ss_pred -----------------------------cccccceEeecCcccccccch-hhcCCC-------CCCEEEccCCCCCCch
Q 009835 290 -----------------------------LMVSLRFLYLTSNELEGGIPK-FFGKMC-------SLNRLCLPYNKLSGDL 332 (524)
Q Consensus 290 -----------------------------~l~~L~~L~Ls~n~l~~~~p~-~l~~l~-------~L~~L~Ls~n~l~~~~ 332 (524)
.+++|++|++++|.++ .+|. .+.... +|++|++++|.++ .+
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 3455555555555555 2222 222111 5555555555555 23
Q ss_pred hHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEc------cCCcCccccchhhhcCCCCCEEECcCCcCe
Q 009835 333 SEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVL------GENRLNGTIDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 333 ~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
|..+.. ..+++|+.|+|++|++++.+..+.++++|++|+| ++|++.+.+|..+..+++|++|++++|++
T Consensus 504 p~~~~~----~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 504 SDDFRA----TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp CGGGST----TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred Chhhhh----ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 333320 0123666666666666663333666666666666 34555666666666666666666666666
Q ss_pred eeCCCCCcccccccccccCCCCCC
Q 009835 407 GKIPLGTQLQSFNASVYAGNPELC 430 (524)
Q Consensus 407 ~~~p~~~~~~~~~~~~~~gn~~~C 430 (524)
+.+|.... ..+....+.+|+..|
T Consensus 579 ~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred CccCHhHh-CcCCEEECcCCCCcc
Confidence 55665422 555556666666655
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9e-35 Score=306.26 Aligned_cols=321 Identities=23% Similarity=0.264 Sum_probs=197.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..|..|..+++|++|++++|.+++. .|..|.++++|++|+|++|.+.. +|.. .
T Consensus 21 ~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVK-ISCH--P 88 (520)
T ss_dssp TTCSEEECCSS--------CCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCE-EECC--C
T ss_pred ccccEEECCCC--------cccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceee-cCcc--c
Confidence 46777777774 55555556677777777777777777664 56677777777777777777663 4433 6
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCC--CEEEeeCCCC--CCCCCCchhhh
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL--KTLVLHSCAL--PPINPSSIWHF 238 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~ 238 (524)
+++|++|++++|.+..++.+..++++++|++|++++|.++.. .+..+++| ++|++++|.+ .+..|..+...
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeeccccccccccccccccc
Confidence 677777777777776555445667777777777777766541 34444555 5555555555 22222110000
Q ss_pred c------------------------c------------------------------------------------------
Q 009835 239 N------------------------L------------------------------------------------------ 240 (524)
Q Consensus 239 ~------------------------~------------------------------------------------------ 240 (524)
. +
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 0 0
Q ss_pred --cCcccEEEccCCCCCCCCCCchh----------------------------h------------------------hc
Q 009835 241 --STSIETLDLSDNNLPSSSVYPWL----------------------------F------------------------NL 266 (524)
Q Consensus 241 --~~~L~~L~L~~n~l~~~~~~~~~----------------------------~------------------------~~ 266 (524)
.++|++|++++|.+.+ .+|..+ . ..
T Consensus 244 ~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHTSSCSEEEEEEEEEES-CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhCcccEEEeecccccC-ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 0134444444444332 222222 0 22
Q ss_pred cccccEEEeeccccccccchhhhcccccceEeecCccccc--ccchhhcCCCCCCEEEccCCCCCCchhHH-HHhccCCC
Q 009835 267 SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG--GIPKFFGKMCSLNRLCLPYNKLSGDLSEM-IQNLSGGC 343 (524)
Q Consensus 267 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~~~ 343 (524)
.++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----- 397 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----- 397 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-----
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-----
Confidence 2356666666666666566666666666666666666664 34455666666666666666666533332 333
Q ss_pred CCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC--Cccccccc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNA 420 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~ 420 (524)
+++|++|++++|++++..+. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+..
T Consensus 398 -l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 398 -TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp -CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred -CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 23677777777777665543 32 67888888888887 67777778899999999999888 46653 34666777
Q ss_pred ccccCCCCCCC
Q 009835 421 SVYAGNPELCG 431 (524)
Q Consensus 421 ~~~~gn~~~C~ 431 (524)
..+.+||+.|+
T Consensus 473 L~l~~N~~~c~ 483 (520)
T 2z7x_B 473 IWLHTNPWDCS 483 (520)
T ss_dssp EECCSSCBCCC
T ss_pred EECcCCCCccc
Confidence 78899998885
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=307.67 Aligned_cols=321 Identities=22% Similarity=0.250 Sum_probs=224.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+..|..+++|++|+|++|.+++. .|..|.++++|++|+|++|.+. .+|.. .
T Consensus 52 ~~L~~L~Ls~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQN--------SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSS--------CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCC--------CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 57888999885 67777777899999999999999999886 6888999999999999999887 45555 7
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCC--CEEEeeCCCC--CCCCCCchhhh
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSL--KTLVLHSCAL--PPINPSSIWHF 238 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~ 238 (524)
+++|++|++++|.+..++.+..+.++++|++|++++|.++.. .+..+++| ++|++++|.+ .+..+..+...
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCccccccc
Confidence 899999999999988776667788999999999999988763 23444555 8888888877 44443311100
Q ss_pred c-----------------------cc------------------------------------------------------
Q 009835 239 N-----------------------LS------------------------------------------------------ 241 (524)
Q Consensus 239 ~-----------------------~~------------------------------------------------------ 241 (524)
. .+
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 0 00
Q ss_pred -CcccEEEccCCCCCCCCCCchhh----------------------------------------------------hccc
Q 009835 242 -TSIETLDLSDNNLPSSSVYPWLF----------------------------------------------------NLSR 268 (524)
Q Consensus 242 -~~L~~L~L~~n~l~~~~~~~~~~----------------------------------------------------~~~~ 268 (524)
++|++|++++|.+.+ .+|..++ ...+
T Consensus 275 ~~~L~~L~l~~n~l~~-~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 275 PRPVEYLNIYNLTITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TSSEEEEEEEEEEECS-CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred cccccEEEEeccEeec-cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 145555555555543 3333221 2233
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCccccc--ccchhhcCCCCCCEEEccCCCCCCchhH-HHHhccCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG--GIPKFFGKMCSLNRLCLPYNKLSGDLSE-MIQNLSGGCTM 345 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~~~~~ 345 (524)
+|++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+.. +
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------l 427 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------A 427 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC------C
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC------c
Confidence 66666666666666666666666677777777776664 2244566666777777777766653332 2333 2
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC--Cccccccccc
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNASV 422 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~ 422 (524)
++|++|++++|++++..+. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+....
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 3677777777777665544 22 68888888888887 67777778899999999999998 45553 4566777778
Q ss_pred ccCCCCCCC
Q 009835 423 YAGNPELCG 431 (524)
Q Consensus 423 ~~gn~~~C~ 431 (524)
+.+||+.|+
T Consensus 504 l~~N~~~c~ 512 (562)
T 3a79_B 504 LHDNPWDCT 512 (562)
T ss_dssp CCSCCBCCC
T ss_pred ecCCCcCCC
Confidence 899999885
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=305.90 Aligned_cols=159 Identities=22% Similarity=0.250 Sum_probs=103.5
Q ss_pred cccEEEeecccccccc--chhhhcccccceEeecCcccc-----------------------cccc-hhhcCCCCCCEEE
Q 009835 269 NIQYLNLGFNSLQGSI--PEAFQLMVSLRFLYLTSNELE-----------------------GGIP-KFFGKMCSLNRLC 322 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~-----------------------~~~p-~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+++.. +..+..+++|++|++++|.+. +..+ ..+..+++|++|+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 5556666666555332 444555555555555555444 3333 2344555555555
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc-cCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT-GPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
+++|.+.+..+..+..+ ++|++|++++|.++ +..|. +..+++|++|++++|++++..|..+..+++|++|++
T Consensus 428 l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CTTSCCEECCTTTTTTC------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcccccchhhhhcC------CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 55555555554444443 47888888888876 34454 788888888888888888777888888888888888
Q ss_pred cCCcCeeeCCCC-CcccccccccccCCCCCCCCC
Q 009835 401 GRNSFTGKIPLG-TQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 401 ~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C~~~ 433 (524)
++|++++..|.. ..+..+....+.+|++.|+.+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 888888766643 346667777888888887543
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-34 Score=305.27 Aligned_cols=327 Identities=19% Similarity=0.175 Sum_probs=207.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.|+|+++ .+++..|..|.++++|++|+|++|.+.+. .|..|.++++|++|+|++|.+.+..|..|++
T Consensus 33 ~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFN--------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTTC--------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccCC--------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 57899999995 77777788888888888888888888876 6788888888888888888888888888888
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.+.+... ..+..+++|++|++++|.+.+..+. .+... +
T Consensus 104 l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l-~ 177 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLDFQNNAIHYLSKE--DMSSL-Q 177 (606)
T ss_dssp CTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCC--CTTCCCTTCCEEECCSSCCCEECHH--HHHTT-T
T ss_pred cccccEeeccccCcccCCc-chhccCCcccEEECCCCcccccCc--ccccCCcccCEEEcccCcccccChh--hhhhh-c
Confidence 8888888888888876432 347788888888888888776521 1333467777777777776655442 22222 5
Q ss_pred ccc--EEEccCCCCCCCCCCchhhhcc---------------------------------------------------cc
Q 009835 243 SIE--TLDLSDNNLPSSSVYPWLFNLS---------------------------------------------------RN 269 (524)
Q Consensus 243 ~L~--~L~L~~n~l~~~~~~~~~~~~~---------------------------------------------------~~ 269 (524)
+|+ +|++++|.+.+ +++..+... .+
T Consensus 178 ~L~~l~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAG--IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TCCSEEEECTTCCCCE--ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred ccceeEEecCCCccCc--cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 555 56666665532 111111100 03
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC--------
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG-------- 341 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------- 341 (524)
|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..++.
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 455555555555544444555555666666665555 44555555555666666655555554544444330
Q ss_pred -----------CCCCCCccEEEcCCCCCccCC--C-CCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 342 -----------GCTMNSLEGVCLEGNDITGPL--P-DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 342 -----------~~~~~~L~~L~Ls~n~l~~~~--~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
...+++|++|++++|.+++.. + .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 112336666666666666543 2 26666667777777776666666666667777777777777666
Q ss_pred eCCCC--CcccccccccccCCC
Q 009835 408 KIPLG--TQLQSFNASVYAGNP 427 (524)
Q Consensus 408 ~~p~~--~~~~~~~~~~~~gn~ 427 (524)
..|.. ..+..+....+.+|.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCC
T ss_pred cccchhhhCcccCCEEECCCCc
Confidence 55432 234555555555554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-34 Score=307.17 Aligned_cols=309 Identities=20% Similarity=0.217 Sum_probs=250.9
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.+++++ +.+....+..+..+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+.+..|..|+++
T Consensus 52 ~l~~l~l~~--------~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKN--------STMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESS--------CEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeC--------CCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 345666666 366655555678899999999999999986 67799999999999999999999988899999
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
++|++|+|++|.+..++. ..|.++++|++|++++|.+++.+ +..+..+++|++|++++|.+.+... ..+ ++
T Consensus 123 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-----~~l-~~ 193 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDL-----SLI-PS 193 (597)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCSBCCG-----GGC-TT
T ss_pred CCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCCCcCh-----hhh-hh
Confidence 999999999999997664 55789999999999999998875 3578999999999999999987632 233 88
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
|+.|++++|.+.+.. .+.+|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+++|+.|+|
T Consensus 194 L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 194 LFHANVSYNLLSTLA-------IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDL 261 (597)
T ss_dssp CSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred hhhhhcccCcccccc-------CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEEC
Confidence 999999999885421 223788999999988743 3222 3678899999998885 356888889999999
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCC
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 403 (524)
++|.+++..|..+..++ +|+.|+|++|.+++.+..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 262 s~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQ------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CSSCCCEEESGGGTTCS------SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CCCccCCCCHHHhcCcc------CCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 99998888888887765 899999999998887666777889999999999888 57777888889999999999
Q ss_pred cCeeeCCCCCcccccccccccCCCCCCC
Q 009835 404 SFTGKIPLGTQLQSFNASVYAGNPELCG 431 (524)
Q Consensus 404 ~l~~~~p~~~~~~~~~~~~~~gn~~~C~ 431 (524)
++++. | ...+..+..+.+.+||+.|.
T Consensus 335 ~l~~~-~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 335 SIVTL-K-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCc-C-hhhcCCCCEEEeeCCCCCCh
Confidence 88754 3 23456777778888888774
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-34 Score=309.67 Aligned_cols=308 Identities=22% Similarity=0.206 Sum_probs=251.7
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.|+++++ .+++..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+..|..+.++
T Consensus 255 ~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKH--------YFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTC--------CCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecC--------ccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 6888888885 6777667778889999999999998885 78888889999999999999888888888999
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
++|++|++++|.+........+..+++|++|++++|.+.+....+..+..+++|++|++++|.+.+..+. .+... ++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l-~~ 401 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE--AFKEC-PQ 401 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT--TTTTC-TT
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH--HhcCC-cc
Confidence 9999999999987743333557889999999999998877632245688889999999999988877664 33444 88
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc---cchhhcCCCCCCE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG---IPKFFGKMCSLNR 320 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~ 320 (524)
|++|++++|.+.+ ..++..+...++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 402 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEEC-CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCeEECCCCcCCC-cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 9999999998865 44444344445899999999999888888888899999999999988763 2356888899999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEE
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 399 (524)
|++++|.+++..|..+..++ +|++|++++|++++..|. +.++++| .|++++|++++..|..+..+++|+.|+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLK------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp EECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred EECCCCccCccChhhhcccc------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 99999999888888777765 899999999999888776 8888899 999999999988888888889999999
Q ss_pred CcCCcCeeeCCCC
Q 009835 400 LGRNSFTGKIPLG 412 (524)
Q Consensus 400 l~~N~l~~~~p~~ 412 (524)
+++|++.|.++..
T Consensus 554 l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 554 LRQNPLDCTCSNI 566 (606)
T ss_dssp CTTCCEECSGGGH
T ss_pred CCCCCccccCCcH
Confidence 9999999887753
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-33 Score=304.88 Aligned_cols=314 Identities=24% Similarity=0.306 Sum_probs=183.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+..|.++++|++|++++|.+++. .|..++++++|++|+|++|.+.+..+..|++
T Consensus 25 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN--------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS--------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 57888999885 56655555677777777777777777765 6667777777777777777776655556777
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+..+..... +
T Consensus 96 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-S 171 (680)
T ss_dssp CTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT-C
T ss_pred CCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhcccc-c
Confidence 7777777777777765443 44667777777777777776653 235566777777777777766655432222233 5
Q ss_pred cccEEEccCCCCCCCCCCchhhhc--------------------------cccccEEEeeccccccccchhhhcccc--c
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNL--------------------------SRNIQYLNLGFNSLQGSIPEAFQLMVS--L 294 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~--------------------------~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L 294 (524)
+|++|++++|.+.+ ..+..+... .++|+.|++++|.+++..|..+..++. |
T Consensus 172 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 172 SLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp EESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred cccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 66666666666643 222111110 023444555555555444444444433 5
Q ss_pred ceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhcc---------------------------CCCCCCC
Q 009835 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS---------------------------GGCTMNS 347 (524)
Q Consensus 295 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------~~~~~~~ 347 (524)
+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..++ ....+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555555555544444455555555555555554444433332221 1122446
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEc----------------------------cCCcCccccchhhhcCCCCCEE
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVL----------------------------GENRLNGTIDKSLSQLLKLESL 398 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~L----------------------------s~N~l~~~~p~~~~~l~~L~~L 398 (524)
|++|++++|.+++..+. +.++++|++|++ ++|++++..|..+..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 66666666666665543 444444444443 4444555556666777777777
Q ss_pred ECcCCcCeeeCC
Q 009835 399 SLGRNSFTGKIP 410 (524)
Q Consensus 399 ~l~~N~l~~~~p 410 (524)
++++|++++.+|
T Consensus 411 ~L~~N~l~~~~~ 422 (680)
T 1ziw_A 411 DLGLNEIGQELT 422 (680)
T ss_dssp ECCSSCCEEECC
T ss_pred eCCCCcCccccC
Confidence 777777776665
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-33 Score=303.45 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=129.1
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccccc-ccchhhcCCCCCCE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNR 320 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 320 (524)
++|++|++++|.+.+ ..+...+...++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++
T Consensus 399 ~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 399 EELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp TTCCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCeeECCCCccCC-ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 344444444444433 2221223333478888888888877777778888888888888888886 36778888889999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC-CCCEE
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESL 398 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L 398 (524)
|++++|.+++..|..+..++ +|++|++++|++++..|. +.++++|++|++++|+++ .+|..+..++ +|++|
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLH------RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp EECTTSCCCEECTTTTTTCT------TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred EECCCCcCCccChhhhcccc------cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 99999998888887777665 999999999999998776 999999999999999999 6777799987 59999
Q ss_pred ECcCCcCeeeCCCCC
Q 009835 399 SLGRNSFTGKIPLGT 413 (524)
Q Consensus 399 ~l~~N~l~~~~p~~~ 413 (524)
++++|++.+.++...
T Consensus 551 ~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 551 NLTNNSVACICEHQK 565 (606)
T ss_dssp ECCSCCCCCSSTTHH
T ss_pred EccCCCcccCCccHH
Confidence 999999999888643
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-33 Score=303.15 Aligned_cols=331 Identities=23% Similarity=0.219 Sum_probs=242.8
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..+++|||+++ .+++..+.+|.++++|++|||++|.+++. .+.+|.++++|++|+|++|++.+..+..|.+
T Consensus 52 ~~~~~LdLs~N--------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCC--------CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 47899999995 78877778899999999999999998875 5677889999999999999988877778899
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchh------
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIW------ 236 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------ 236 (524)
+++|++|+|++|+++.++. ..|+++++|++|++++|.++.... +..+..+++|++|++++|.+.+..+..+.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCccccccccccccchhhhh
Confidence 9999999999998887654 457888999999999998876532 45778888888888888876543221000
Q ss_pred --------------------------------------------------------------------------------
Q 009835 237 -------------------------------------------------------------------------------- 236 (524)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (524)
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ------------------------------------------hhcc----------------------------------
Q 009835 237 ------------------------------------------HFNL---------------------------------- 240 (524)
Q Consensus 237 ------------------------------------------~~~~---------------------------------- 240 (524)
....
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 0000
Q ss_pred ---------cCcccEEEccCCCCCCC-CCCchhhhccccccEEEeecccc-----------------------cccc-ch
Q 009835 241 ---------STSIETLDLSDNNLPSS-SVYPWLFNLSRNIQYLNLGFNSL-----------------------QGSI-PE 286 (524)
Q Consensus 241 ---------~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~l-----------------------~~~~-~~ 286 (524)
+++|+.|+++.|.+... ..+...... .+|+.+++..+.+ .... +.
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred CCCCcccccccccccchhhccccccccccccchhhh-hhhhhhhccccccccccccccccccccchhhhhcccccccccc
Confidence 02223333333322110 001111111 2445555544433 3222 23
Q ss_pred hhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC-CchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-
Q 009835 287 AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS-GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD- 364 (524)
Q Consensus 287 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~- 364 (524)
.+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..++ +|++|+|++|++++.+|.
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------ccCEEECCCCccCCcChHH
Confidence 4556777788888888888777778888888888888888643 34555565554 999999999999998887
Q ss_pred CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCc-c-cccccccccCCCCCCC
Q 009835 365 LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQ-L-QSFNASVYAGNPELCG 431 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~gn~~~C~ 431 (524)
|.++++|++|+|++|++++..|..|.++++|++||+++|++++..|.... + ..+....+.+|||.|+
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999998899999999999999999999998886532 2 5677788999999996
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-33 Score=304.90 Aligned_cols=324 Identities=23% Similarity=0.187 Sum_probs=191.0
Q ss_pred cceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCc-----cCCc----cccCCCCCcEEEcc
Q 009835 102 VLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL-----KVPR----PFQYLSGLVYLHLE 172 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~-----~~p~----~~~~l~~L~~L~L~ 172 (524)
.+++..|..+..+++|++|++++|.+.+. .|..+..+++|++|++++|...+ .+|. .|..+++|++|+++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 45555555555556666666666555554 44455555555555555433221 1221 34455555555555
Q ss_pred CCCCCCCCCchhcCCCCCCcEEEccCCCC----------------------------CCCCCchHhhhcccCCCEEEeeC
Q 009835 173 NSNLFSLGSLQWLSHLSSLRHLDLSYINL----------------------------TKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 173 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l----------------------------~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+|.+..... ..+.++++|++|++++|.+ ++.. +..+..+++|++|++++
T Consensus 338 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 338 DNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp SCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCS
T ss_pred CCccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC--hhhhhCCCCCCEEeCCC
Confidence 555554332 3345555555555555442 2221 12334444444444444
Q ss_pred CCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccc--cccchhhhcccccceEeecCc
Q 009835 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQ--GSIPEAFQLMVSLRFLYLTSN 302 (524)
Q Consensus 225 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n 302 (524)
|.+.+..+. ..+..+++|++|++++|.+.+ +.+..+...++|+.|++++|.+. +.+|..+..+++|+.|++++|
T Consensus 415 N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 415 NEIGQELTG--QEWRGLENIFEIYLSYNKYLQ--LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp SCCEEECCS--GGGTTCTTCCEEECCSCSEEE--CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred CcCccccCc--ccccCcccccEEecCCCCcce--eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 444332221 111222444444444444422 12222222335555555555544 345666777777777777777
Q ss_pred ccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhc--cCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCC
Q 009835 303 ELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL--SGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGEN 379 (524)
Q Consensus 303 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N 379 (524)
.+++..+..+.++++|++|++++|.+++..+..+... .....+++|++|++++|+++..++. +.++++|+.|+|++|
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 7776666667777778888888877765433221110 0123355899999999999976665 889999999999999
Q ss_pred cCccccchhhhcCCCCCEEECcCCcCeeeCCCCC--cccccccccccCCCCCCCCC
Q 009835 380 RLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGT--QLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 380 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~gn~~~C~~~ 433 (524)
++++..+..|..+++|+.|++++|++++..|... .+..+....+.+|||.|+..
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9997777778899999999999999997666432 45677888899999999654
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.5e-34 Score=310.70 Aligned_cols=326 Identities=17% Similarity=0.179 Sum_probs=208.9
Q ss_pred CCcEEEEEcCCCCCCCCCCCccee-----------------ecCcccc--CCCCCCEEEccCCCCCCCCCccccCCCCCC
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKG-----------------TISPALL--KLHDLRHLDLSNNHFGGSPLPEFIGSLSRL 142 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L 142 (524)
..+++.|+|+++ .+++ .+|+.++ ++++|++|+|++|.+.+. +|..+.++++|
T Consensus 447 L~~L~~L~Ls~N--------~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L 517 (876)
T 4ecn_A 447 LTKLQIIYFANS--------PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPEL 517 (876)
T ss_dssp CTTCCEEEEESC--------CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSC
T ss_pred CCCCCEEECcCC--------cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCC
Confidence 357899999986 5666 4899888 999999999999998887 89999999999
Q ss_pred CEEEccCCC-CCc-cCCccccCCC-------CCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhc
Q 009835 143 RYLNLSCGT-SLL-KVPRPFQYLS-------GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAK 213 (524)
Q Consensus 143 ~~L~L~~n~-~~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 213 (524)
++|+|++|. +++ .+|..+++++ +|++|+|++|.+..++....+.++++|++|++++|.++..+ .+..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC----CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch----hhcC
Confidence 999999998 887 7787665554 89999999998885553236888888889998888887443 6777
Q ss_pred ccCCCEEEeeCCCCCCCCCCchhhhcccCc-ccEEEccCCCCCCCCCCchhhhcc-ccccEEEeeccccccccchh---h
Q 009835 214 LRSLKTLVLHSCALPPINPSSIWHFNLSTS-IETLDLSDNNLPSSSVYPWLFNLS-RNIQYLNLGFNSLQGSIPEA---F 288 (524)
Q Consensus 214 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~---~ 288 (524)
+++|+.|++++|.+. ..|. .+..+ ++ |++|++++|.+. .+|..+.... ++|+.|++++|.+++.+|.. +
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~--~l~~l-~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPE--DFCAF-TDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp TSEESEEECCSSCCS-CCCT--TSCEE-CTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CCcceEEECcCCccc-cchH--HHhhc-cccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 888888888888877 3442 44555 66 888888888773 4554433322 13777777777776554421 1
Q ss_pred h--cccccceEeecCcccccccchh-hcCCCCCCEEEccCCCCCCchhHHHHhcc-CCCCCCCccEEEcCCCCCccCCCC
Q 009835 289 Q--LMVSLRFLYLTSNELEGGIPKF-FGKMCSLNRLCLPYNKLSGDLSEMIQNLS-GGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 289 ~--~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
. .+++|+.|++++|.++ .+|.. +..+++|+.|+|++|.++...+..+.... ....+++|+.|+|++|+++..+..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 1 2335666666666666 33333 33566666666666666633222221110 011122566666666666533333
Q ss_pred CC--CCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC------CcCeeeCCCC-CcccccccccccCCCC
Q 009835 365 LG--GFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR------NSFTGKIPLG-TQLQSFNASVYAGNPE 428 (524)
Q Consensus 365 ~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~-~~~~~~~~~~~~gn~~ 428 (524)
+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|.. ..+..+....+.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 43 55666666666666654 455555666666666544 4555555533 2244444455555543
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-33 Score=283.81 Aligned_cols=309 Identities=22% Similarity=0.205 Sum_probs=260.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++..+..+..+++|++|++++|.+++. .|..++.+++|++|++++|.+....+..|.+
T Consensus 69 ~~L~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCC--------cccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 57889999985 78887788999999999999999999986 7788999999999999999999766666899
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++. ..+.++++|++|++++|.++..+ +..+++|+.|++++|.+.+... .+
T Consensus 140 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~~~~~--------~~ 205 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAI--------PI 205 (390)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCSEEEC--------CS
T ss_pred CCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc-----cccccccceeecccccccccCC--------CC
Confidence 9999999999999986654 56899999999999999998763 5778999999999998875433 27
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+.. ++.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 206 ~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 206 AVEELDASHNSINV--VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp SCSEEECCSSCCCE--EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cceEEECCCCeeee--cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 89999999999943 3332 235899999999999864 5788999999999999999988899999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
+++|.+++. +..+. .+++|++|++++|++++.++.+..+++|+.|++++|.+++. + +..+++|+.|++++
T Consensus 279 L~~n~l~~~-~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 279 ISNNRLVAL-NLYGQ------PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCSSCCCEE-ECSSS------CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCCCcCccc-CcccC------CCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCC
Confidence 999999864 33333 34599999999999997766788899999999999999854 3 67889999999999
Q ss_pred CcCeeeCCCCCcccccccccccCCCCCCCC
Q 009835 403 NSFTGKIPLGTQLQSFNASVYAGNPELCGL 432 (524)
Q Consensus 403 N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~ 432 (524)
|++.+.... ..+..+....+.+++..|..
T Consensus 349 N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 349 NDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp SCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CCccchhHH-HHHHHHHhhcccccCceecc
Confidence 999976432 33445555567777777754
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=298.54 Aligned_cols=141 Identities=20% Similarity=0.285 Sum_probs=122.4
Q ss_pred cccEEEeeccccccccc-hhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC-CchhHHHHhccCCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIP-EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS-GDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~~~~~ 346 (524)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++ +..|..+..++
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~------ 470 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------ 470 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc------
Confidence 66666666666665544 46778899999999999999989999999999999999999987 46776666655
Q ss_pred CccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcc
Q 009835 347 SLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQL 415 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 415 (524)
+|++|++++|++++..|. +..+++|++|++++|++++..|..+.++++|+.|++++|+++|.+|....+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999998776 899999999999999999888888999999999999999999999976544
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=288.36 Aligned_cols=311 Identities=21% Similarity=0.228 Sum_probs=237.8
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.+|++++ .++ .+|..+. ++|++|++++|.+++. .|..|.++++|++|+|++|.+.+..|..|+++++
T Consensus 3 ~~l~ls~n--------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKN--------GLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTS--------CCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCC--------Ccc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 35788885 666 5777666 8999999999999986 6789999999999999999999999999999999
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc-
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI- 244 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L- 244 (524)
|++|+|++|.++.++.. .+++|++|++++|.+++.+. +..++++++|++|++++|.+.+. .+... ++|
T Consensus 71 L~~L~Ls~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~-p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l-~~L~ 139 (520)
T 2z7x_B 71 LEYLDLSHNKLVKISCH----PTVNLKHLDLSFNAFDALPI-CKEFGNMSQLKFLGLSTTHLEKS-----SVLPI-AHLN 139 (520)
T ss_dssp CCEEECCSSCCCEEECC----CCCCCSEEECCSSCCSSCCC-CGGGGGCTTCCEEEEEESSCCGG-----GGGGG-TTSC
T ss_pred CCEEecCCCceeecCcc----ccCCccEEeccCCccccccc-hhhhccCCcceEEEecCcccchh-----hcccc-ccce
Confidence 99999999999866542 89999999999999987532 46899999999999999998762 33334 777
Q ss_pred -cEEEccCCCC--CCCCCCchhhhc-------------------------------------------------------
Q 009835 245 -ETLDLSDNNL--PSSSVYPWLFNL------------------------------------------------------- 266 (524)
Q Consensus 245 -~~L~L~~n~l--~~~~~~~~~~~~------------------------------------------------------- 266 (524)
++|++++|.+ .+ ..+..+...
T Consensus 140 L~~L~l~~n~l~~~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 140 ISKVLLVLGETYGEK-EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218 (520)
T ss_dssp EEEEEEEECTTTTSS-CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG
T ss_pred eeEEEeecccccccc-cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc
Confidence 9999999988 33 223222210
Q ss_pred ---------------------------cccccEEEeeccccccccchhh-------------------------------
Q 009835 267 ---------------------------SRNIQYLNLGFNSLQGSIPEAF------------------------------- 288 (524)
Q Consensus 267 ---------------------------~~~L~~L~Ls~n~l~~~~~~~~------------------------------- 288 (524)
.++|++|++++|.+++.+|..+
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 1268888888888876666544
Q ss_pred ----------------------hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCC--chhHHHHhccCCCC
Q 009835 289 ----------------------QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSG--DLSEMIQNLSGGCT 344 (524)
Q Consensus 289 ----------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~~~~ 344 (524)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ ..|..+..++
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~---- 374 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK---- 374 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT----
T ss_pred cccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC----
Confidence 455677777777777777777777778888888888888776 3445666554
Q ss_pred CCCccEEEcCCCCCccCCC-C-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-Ccccccccc
Q 009835 345 MNSLEGVCLEGNDITGPLP-D-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNAS 421 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~ 421 (524)
+|++|++++|.+++.+| . +..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|.. ..+..+...
T Consensus 375 --~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 375 --SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp --TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred --CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 78888888888887333 3 67778888888888888777666553 67888888888887 55542 345666666
Q ss_pred cccCCCCC
Q 009835 422 VYAGNPEL 429 (524)
Q Consensus 422 ~~~gn~~~ 429 (524)
.+.+|...
T Consensus 450 ~L~~N~l~ 457 (520)
T 2z7x_B 450 NVASNQLK 457 (520)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 77777643
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-33 Score=297.22 Aligned_cols=310 Identities=22% Similarity=0.201 Sum_probs=263.6
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..|..|..+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+.+..+..|++
T Consensus 75 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDL--------QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 46888999885 78888888999999999999999999996 7788999999999999999999777777899
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|+|++|.+...+. ..+.++++|++|++++|.+++.+ +..+++|+.|++++|.+.+... +.
T Consensus 146 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l~~--------~~ 211 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAI--------PI 211 (597)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEEEC--------CT
T ss_pred CCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccccccC--------Cc
Confidence 9999999999999986654 56899999999999999998763 5678999999999998876433 27
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|+.|++++|.+.. ++... .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 212 ~L~~L~ls~n~l~~--~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 212 AVEELDASHNSINV--VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp TCSEEECCSSCCCE--EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred hhheeeccCCcccc--ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 89999999999843 33322 2489999999999986 36789999999999999999999999999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
|++|.+++. |..+.. +++|+.|+|++|.+++.++.+..+++|+.|+|++|.+++. + +..+++|+.|++++
T Consensus 285 Ls~N~l~~l-~~~~~~------l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 285 ISNNRLVAL-NLYGQP------IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CTTSCCCEE-ECSSSC------CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCCCCCCCC-Cccccc------CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeC
Confidence 999999874 333333 4599999999999997666688899999999999999865 3 67789999999999
Q ss_pred CcCeeeCCCCCcccccccccccCCCCCCCCC
Q 009835 403 NSFTGKIPLGTQLQSFNASVYAGNPELCGLP 433 (524)
Q Consensus 403 N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~ 433 (524)
|++.|.... ..+..+....+.+++..|+.+
T Consensus 355 N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 355 NDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 999987543 334555566678888888753
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.3e-32 Score=268.26 Aligned_cols=303 Identities=20% Similarity=0.299 Sum_probs=253.2
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..+++.|+++++ .+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+... +.+.
T Consensus 43 l~~L~~L~l~~~--------~i~-~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGE--------KVA-SIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQ 107 (347)
T ss_dssp HTTCSEEECCSS--------CCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccccEEEEeCC--------ccc-cch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHc
Confidence 357889999986 443 233 48889999999999999987 444 99999999999999988764 4699
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
++++|++|++++|.+...+. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +...
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~----~~~l- 176 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTP----IANL- 176 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCGG----GGGC-
T ss_pred CCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccc---cchhhCCCCcEEEecCCCcCCchh----hccC-
Confidence 99999999999999986654 889999999999999655543 358999999999999999877644 3344
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+.+ +++ +.. .++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 177 ~~L~~L~l~~n~l~~--~~~-~~~-l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 248 (347)
T 4fmz_A 177 TDLYSLSLNYNQIED--ISP-LAS-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248 (347)
T ss_dssp TTCSEEECTTSCCCC--CGG-GGG-CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCEEEccCCcccc--ccc-ccC-CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE
Confidence 999999999999944 333 444 4599999999999986544 8889999999999999996544 8899999999
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++++|.+++. ..+.. +++|++|++++|.+++. +.+..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 249 ~l~~n~l~~~--~~~~~------l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 249 EIGTNQISDI--NAVKD------LTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp ECCSSCCCCC--GGGTT------CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred ECCCCccCCC--hhHhc------CCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 9999999875 33444 44999999999999975 568899999999999999999999999999999999999
Q ss_pred CCcCeeeCCCCCcccccccccccCCCC
Q 009835 402 RNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 402 ~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
+|++++..| ...+..+....+.+|+.
T Consensus 320 ~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 320 QNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCccccccC-hhhhhccceeehhhhcc
Confidence 999998777 55677788888888874
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.6e-32 Score=287.01 Aligned_cols=311 Identities=23% Similarity=0.236 Sum_probs=241.8
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.++++++ .+++ +|..+. ++|++|++++|.+++. .|..|.++++|++|+|++|.+.+..|..|.++++
T Consensus 34 ~~l~ls~~--------~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNR--------NLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTS--------CCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCC--------CCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 77899885 6664 776664 8999999999999986 6789999999999999999999999999999999
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc-
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI- 244 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L- 244 (524)
|++|++++|.++.++.. .+++|++|++++|.++..+. +..++++++|++|++++|.+.+... ... ++|
T Consensus 102 L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~~~~~-----~~l-~~L~ 170 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFRQLDL-----LPV-AHLH 170 (562)
T ss_dssp CCEEECTTSCCCEECSC----CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCCTTTT-----GGG-TTSC
T ss_pred CCEEECCCCcCCccCcc----ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCccccCch-----hhh-hhce
Confidence 99999999999976642 89999999999999988642 4689999999999999999876322 222 555
Q ss_pred -cEEEccCCCC--CCCCCCchhhhc-------------------------------------------------------
Q 009835 245 -ETLDLSDNNL--PSSSVYPWLFNL------------------------------------------------------- 266 (524)
Q Consensus 245 -~~L~L~~n~l--~~~~~~~~~~~~------------------------------------------------------- 266 (524)
++|++++|.+ ++ ..+..+...
T Consensus 171 L~~L~L~~n~l~~~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 171 LSCILLDLVSYHIKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp EEEEEEEESSCCCCS-SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeEEEeecccccccc-cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 9999999988 43 222222110
Q ss_pred -------------------------cccccEEEeeccccccccchhh---------------------------------
Q 009835 267 -------------------------SRNIQYLNLGFNSLQGSIPEAF--------------------------------- 288 (524)
Q Consensus 267 -------------------------~~~L~~L~Ls~n~l~~~~~~~~--------------------------------- 288 (524)
.++|++|++++|.+++.+|..+
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 0167788888888876666543
Q ss_pred --------------------hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCc--hhHHHHhccCCCCCC
Q 009835 289 --------------------QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD--LSEMIQNLSGGCTMN 346 (524)
Q Consensus 289 --------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~~~~~ 346 (524)
..+++|++|++++|.+++..|..+..+++|++|++++|++++. .|..+..++
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~------ 403 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS------ 403 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT------
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC------
Confidence 4567888888888888877888888888888888888888863 344555544
Q ss_pred CccEEEcCCCCCccCCC-C-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC-CCcccccccccc
Q 009835 347 SLEGVCLEGNDITGPLP-D-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL-GTQLQSFNASVY 423 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~ 423 (524)
+|++|++++|++++.+| . +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|. ...+..+....+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 88888888888887444 3 77888888888888888876666543 68888888888888 5554 334566777777
Q ss_pred cCCCCC
Q 009835 424 AGNPEL 429 (524)
Q Consensus 424 ~gn~~~ 429 (524)
.+|...
T Consensus 481 ~~N~l~ 486 (562)
T 3a79_B 481 ASNQLK 486 (562)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 777653
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-32 Score=291.58 Aligned_cols=316 Identities=22% Similarity=0.278 Sum_probs=215.7
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCc-cCCccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLL-KVPRPF 160 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~~ 160 (524)
..+++.|+|+++ .+++..|..|..+++|++|++++|.+++. .|..++++++|++|++++|.+.+ ..|..+
T Consensus 49 l~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSS--------RINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCC--------CcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 357899999985 78888888999999999999999999986 66779999999999999999886 467788
Q ss_pred cCCCCCcEEEccCCCC-CCCCCchhcCCCCCCcEEEccCCCCCCCC-Cc--------------------hH-hhhcccCC
Q 009835 161 QYLSGLVYLHLENSNL-FSLGSLQWLSHLSSLRHLDLSYINLTKSS-DW--------------------FQ-VVAKLRSL 217 (524)
Q Consensus 161 ~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~--------------------~~-~l~~l~~L 217 (524)
+++++|++|++++|.+ ..++ ...+.++++|++|++++|.+++.. .. +. .+..+++|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 198 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred hccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccc
Confidence 9999999999999984 4332 245788888888988888877531 10 11 12457899
Q ss_pred CEEEeeCCCCCCCCCCchh-------------------------------------------------------------
Q 009835 218 KTLVLHSCALPPINPSSIW------------------------------------------------------------- 236 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~------------------------------------------------------------- 236 (524)
++|++++|.+.+.......
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 278 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhh
Confidence 9999999988764200000
Q ss_pred --------------------------hhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccc-----
Q 009835 237 --------------------------HFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP----- 285 (524)
Q Consensus 237 --------------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----- 285 (524)
......+|++|++++|.+ ..+|..++...++|++|++++|.+++.+|
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l--~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC--CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc--ccCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 001113444555555554 23444444333355555555555554332
Q ss_pred ------------------------hhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC
Q 009835 286 ------------------------EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341 (524)
Q Consensus 286 ------------------------~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 341 (524)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++........+..
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~ 435 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSE
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceE
Confidence 23444555555555555555 34445555555555555555554322111011100
Q ss_pred -----------CCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 342 -----------GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 342 -----------~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
...+++|++|++++|+++ .+|....+++|++|+|++|++++..|..+..+++|+.|++++|+++|.+|
T Consensus 436 L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 436 LDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 024678999999999998 45556778999999999999999888899999999999999999999988
Q ss_pred C
Q 009835 411 L 411 (524)
Q Consensus 411 ~ 411 (524)
.
T Consensus 515 ~ 515 (549)
T 2z81_A 515 R 515 (549)
T ss_dssp H
T ss_pred c
Confidence 4
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=6.2e-33 Score=274.17 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=184.2
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCCCCCCCCCCC-CCCCCCCcccceEeC--------CCCCcEEEEEcCCCCCCCCCCCcc
Q 009835 34 MRCIDEEREALLTFKQSLV-DEYGVLSSWGKD-NDKRDCCKWRGVRCS--------NKTGHVKVLNLRRSDDENSRGTVL 103 (524)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~--------~~~~~v~~L~L~~~~~~~~~~~~l 103 (524)
..+..+|+.||++||+.+. ++.++..+|... ....++|.|.|+.|. ....+|+.|+|+++ .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--------PL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS--------CC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC--------Cc
Confidence 4467789999999999884 776777888310 146789999999994 23468899999885 56
Q ss_pred eeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCch
Q 009835 104 KGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQ 183 (524)
Q Consensus 104 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 183 (524)
+ .+|+.++++++|++|+|++|.++ . +|..++.+++|++|+|++|.+. .+|..+.++++|++|++++|++..... .
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p-~ 168 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-E 168 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC-S
T ss_pred h-hcChhhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC-h
Confidence 5 78888888999999999999998 3 8888899999999999999888 778889999999999999876553222 2
Q ss_pred h---------cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC
Q 009835 184 W---------LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL 254 (524)
Q Consensus 184 ~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l 254 (524)
. +.++++|++|++++|.++..+ ..+..+++|++|++++|.+.+..+ .+..+ ++|++|++++|.+
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l-~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNSPLSALGP---AIHHL-PKLEELDLRGCTA 241 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESSCCCCCCG---GGGGC-TTCCEEECTTCTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCCCCCcCch---hhccC-CCCCEEECcCCcc
Confidence 2 233666666666666666443 346666666666666666665333 23333 5666666666555
Q ss_pred CCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 255 PSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 255 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
.+ .++..+.... +|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++..+.+
T Consensus 242 ~~-~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 242 LR-NYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CC-BCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hh-hhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 44 4444433333 555555555555555555555555555555555555555555555555555555555443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-31 Score=275.16 Aligned_cols=304 Identities=25% Similarity=0.325 Sum_probs=226.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++.. + +..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+..+ +.+
T Consensus 68 ~~L~~L~Ls~n--------~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNN--------QLTDIT-P-LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDIDP--LKN 132 (466)
T ss_dssp TTCCEEECCSS--------CCCCCG-G-GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred cCCCEEECCCC--------ccCCch-h-hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCCChH--HcC
Confidence 56888888885 555433 3 88888888888888888774 33 8888888888888888776533 788
Q ss_pred CCCCcEEEccCCCCCCCCCc------------------hhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeC
Q 009835 163 LSGLVYLHLENSNLFSLGSL------------------QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+++|++|++++|.+...+.. ..+.++++|++|++++|.+...+ .+..+++|++|++++
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEecC
Confidence 88888888888877654321 12556677777777777766553 467777888888888
Q ss_pred CCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCccc
Q 009835 225 CALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNEL 304 (524)
Q Consensus 225 n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 304 (524)
|.+.+..+ +.. +++|++|++++|.+.+ + +.+... ++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 209 n~l~~~~~----~~~-l~~L~~L~l~~n~l~~--~-~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 209 NQISDITP----LGI-LTNLDELSLNGNQLKD--I-GTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp SCCCCCGG----GGG-CTTCCEEECCSSCCCC--C-GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred Cccccccc----ccc-cCCCCEEECCCCCccc--c-hhhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 87776544 223 3788888888888743 2 334444 488888888888876544 77788888888888888
Q ss_pred ccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccc
Q 009835 305 EGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 305 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 384 (524)
++..+ +..+++|++|++++|.+++..+ +..+ ++|+.|++++|++++..+ +..+++|+.|++++|.+++.
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l------~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNL------KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC------TTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh--hcCC------CCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc
Confidence 85444 7788888888888888887655 4444 489999999999887766 77889999999999998865
Q ss_pred cchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCCCC
Q 009835 385 IDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPELC 430 (524)
Q Consensus 385 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C 430 (524)
..+..+++|+.|++++|++++..| ...+..+....+.+|++..
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred --hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 468889999999999999998877 4566777777788887654
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=301.53 Aligned_cols=288 Identities=25% Similarity=0.232 Sum_probs=124.0
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++|++|++++|.+.+. .+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+..... ..+..+++|++|
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-CSCSSCTTCCEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-HHhcCCCCCCEE
Confidence 3445555555544443 34444445555555555554444444444445555555555554443322 334444455555
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.+...+ ...+..+++|++|++++|.+.+... +++|+.|++++|++. .++.. ..+++.|+
T Consensus 344 ~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~--~l~~~----~~~l~~L~ 407 (844)
T 3j0a_A 344 DLQKNHIAIIQ--DQTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLV--TLPKI----NLTANLIH 407 (844)
T ss_dssp ECCSCCCCCCC--SSCSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCC--CCCCC----CTTCCEEE
T ss_pred ECCCCCCCccC--hhhhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCcc--ccccc----ccccceee
Confidence 55555444443 1234444455555555544443221 144444455444442 22221 12444444
Q ss_pred eeccccccc-cchhhhcccccceEeecCcccccccch-hhcCCCCCCEEEccCCCCCCch-----hHHHHhccCCCCCCC
Q 009835 275 LGFNSLQGS-IPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDL-----SEMIQNLSGGCTMNS 347 (524)
Q Consensus 275 Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~~~~~~~ 347 (524)
+++|++++. .+..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++... +..|..+ ++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l------~~ 481 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL------SH 481 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB------CC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc------cc
Confidence 444444432 111223444444444444444432221 2233444444444444443211 1122222 24
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCC
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGN 426 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn 426 (524)
|+.|+|++|.+++.++. +.++++|+.|+|++|++++..+..+. ++|+.|++++|++++..|.. +..+....+.+|
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N 557 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN 557 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC
Confidence 44444444444444443 44444444444444444433333332 44444444444444444432 223334444444
Q ss_pred CCCC
Q 009835 427 PELC 430 (524)
Q Consensus 427 ~~~C 430 (524)
|+.|
T Consensus 558 p~~C 561 (844)
T 3j0a_A 558 KFIC 561 (844)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 4444
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=6.3e-31 Score=260.40 Aligned_cols=275 Identities=19% Similarity=0.154 Sum_probs=227.6
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. ++|++|++++|.+++. .+..+.++++|++|+|++|.+.+..|..|.++++|++|++++|.+..++.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~---- 117 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---- 117 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS----
T ss_pred ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh----
Confidence 3454443 6899999999999985 56689999999999999999999989999999999999999999986654
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC--CCCCchhhhcccCcccEEEccCCCCCCCCCCchh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP--INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 263 (524)
.-.++|++|++++|.++..+ ...+..+++|++|++++|.+.. ..+. .+..+ ++|++|++++|.+. .++..+
T Consensus 118 ~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l-~~L~~L~l~~n~l~--~l~~~~ 190 (330)
T 1xku_A 118 KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENG--AFQGM-KKLSYIRIADTNIT--TIPQGL 190 (330)
T ss_dssp SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTT--GGGGC-TTCCEEECCSSCCC--SCCSSC
T ss_pred hhcccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccCcChh--hccCC-CCcCEEECCCCccc--cCCccc
Confidence 12379999999999998876 4678999999999999999864 3342 44444 99999999999994 455544
Q ss_pred hhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 264 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++
T Consensus 191 ~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--- 263 (330)
T 1xku_A 191 P---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK--- 263 (330)
T ss_dssp C---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS---
T ss_pred c---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC---
Confidence 3 58999999999999888889999999999999999999888888999999999999999998 4555565544
Q ss_pred CCCCccEEEcCCCCCccCCCC-CC------CCCCCcEEEccCCcCcc--ccchhhhcCCCCCEEECcCCc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LG------GFSSLKILVLGENRLNG--TIDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~------~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~ 404 (524)
+|++|++++|++++..+. +. ..+.|+.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 264 ---~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 264 ---YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ---CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 899999999999987665 43 24789999999998864 567788899999999999985
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.4e-31 Score=262.51 Aligned_cols=274 Identities=21% Similarity=0.176 Sum_probs=229.0
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+..++.. +
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~ 121 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--L 121 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS--C
T ss_pred ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc--c
Confidence 4565553 6899999999999885 677899999999999999999998899999999999999999999866641 2
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCC--CCCCchhhhcccCcccEEEccCCCCCCCCCCchh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPP--INPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWL 263 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 263 (524)
. ++|++|++++|.++..+ ...+..+++|++|++++|.+.. ..+ ..+..+ +|++|++++|.+. .++..+
T Consensus 122 ~--~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l-~L~~L~l~~n~l~--~l~~~~ 191 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGL-KLNYLRISEAKLT--GIPKDL 191 (332)
T ss_dssp C--TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSC-CCSCCBCCSSBCS--SCCSSS
T ss_pred c--ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCc---ccccCC-ccCEEECcCCCCC--ccCccc
Confidence 2 89999999999999876 3568999999999999999863 334 233342 8999999999994 455544
Q ss_pred hhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCC
Q 009835 264 FNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGC 343 (524)
Q Consensus 264 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~ 343 (524)
. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++
T Consensus 192 ~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--- 264 (332)
T 2ft3_A 192 P---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK--- 264 (332)
T ss_dssp C---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT---
T ss_pred c---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc---
Confidence 3 58999999999999888888999999999999999999888888999999999999999998 5566676655
Q ss_pred CCCCccEEEcCCCCCccCCCC-CCC------CCCCcEEEccCCcCc--cccchhhhcCCCCCEEECcCCc
Q 009835 344 TMNSLEGVCLEGNDITGPLPD-LGG------FSSLKILVLGENRLN--GTIDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 344 ~~~~L~~L~Ls~n~l~~~~~~-~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~N~ 404 (524)
+|++|++++|++++..+. +.. .++|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 265 ---~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 ---LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999987665 433 467999999999987 6778889999999999999985
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5e-30 Score=255.68 Aligned_cols=281 Identities=23% Similarity=0.325 Sum_probs=235.0
Q ss_pred CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
..+++.|+++++ .+++ ++. +..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +.
T Consensus 65 ~~~L~~L~l~~n--------~i~~-~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 65 LTNLEYLNLNGN--------QITD-ISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp CTTCCEEECCSS--------CCCC-CGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred cCCccEEEccCC--------cccc-chh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh--hc
Confidence 357999999995 5554 333 9999999999999999987 44 68999999999999999886543 89
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
.+++|++|++++|...... ..+..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+ +...
T Consensus 130 ~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~l- 198 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIEDISP----LASL- 198 (347)
T ss_dssp TCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCCCGG----GGGC-
T ss_pred cCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCch----hhccCCCCCEEEccCCccccccc----ccCC-
Confidence 9999999999999655332 44899999999999999988774 38899999999999999887543 3344
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|+.|++++|.+.+ .++ +. ..++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 199 ~~L~~L~l~~n~l~~--~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 199 TSLHYFTAYVNQITD--ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp TTCCEEECCSSCCCC--CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CccceeecccCCCCC--Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 999999999999954 333 44 44599999999999986544 88999999999999999854 468899999999
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
++++|.+++. ..+..++ +|++|++++|.+++..+. +..+++|++|++++|.+++..| +..+++|++|++
T Consensus 271 ~l~~n~l~~~--~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 271 NVGSNQISDI--SVLNNLS------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp ECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred EccCCccCCC--hhhcCCC------CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 9999999876 3455544 999999999999988776 8899999999999999997766 889999999999
Q ss_pred cCCcCe
Q 009835 401 GRNSFT 406 (524)
Q Consensus 401 ~~N~l~ 406 (524)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 999986
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7.1e-30 Score=264.99 Aligned_cols=303 Identities=23% Similarity=0.292 Sum_probs=218.5
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+. .+| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.+
T Consensus 46 ~~l~~L~l~~~--------~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 46 DQVTTLQADRL--------GIK-SID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HTCCEEECCSS--------CCC-CCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred ccccEEecCCC--------CCc-cCc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccChh--hcC
Confidence 46888999885 443 244 488899999999999999984 44 9999999999999999987655 999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc-----------------hHhhhcccCCCEEEeeCC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW-----------------FQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------------~~~l~~l~~L~~L~L~~n 225 (524)
+++|++|++++|.+...+. +.++++|++|++++|.+...+.+ ...+..+++|++|++++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 9999999999999987653 89999999999999988775321 012455566666666666
Q ss_pred CCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.+.+.. .+..+ ++|++|++++|.+.+ .++ +.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~----~l~~l-~~L~~L~l~~n~l~~--~~~-~~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 188 KVSDIS----VLAKL-TNLESLIATNNQISD--ITP-LGI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCCCCG----GGGGC-TTCSEEECCSSCCCC--CGG-GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCCh----hhccC-CCCCEEEecCCcccc--ccc-ccc-cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 665431 22333 677777777777643 222 223 34777777777777643 34666777777777777777
Q ss_pred cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcccc
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
+..+ +..+++|++|++++|.+++..+ +..+ ++|+.|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGL------TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC------TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCC------CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCch
Confidence 5444 6677777777777777776544 4443 478888888888876544 677788888888888887665
Q ss_pred chhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCC
Q 009835 386 DKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 386 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
| +..+++|++|++++|++++. +....+..+....+.+|..
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred h--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCcc
Confidence 5 67788888888888888764 4444556666666777764
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-30 Score=281.04 Aligned_cols=314 Identities=22% Similarity=0.216 Sum_probs=245.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+.+|.++++|++|+|++|++++. .+..|.++++|++|+|++|.+.+..+..|++
T Consensus 76 ~~L~~L~Ls~N--------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 76 PELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred CCCCEEECCCC--------cCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 47889999885 78887788899999999999999999885 5678999999999999999999888888999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCC-ch---------------------------------
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD-WF--------------------------------- 208 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~--------------------------------- 208 (524)
+++|++|++++|.+.....+..+..+++|++|++++|.+++... ..
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 99999999999999877777788899999999999987754310 00
Q ss_pred --------------------------------------------------------------------------------
Q 009835 209 -------------------------------------------------------------------------------- 208 (524)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (524)
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence
Q ss_pred ---------------HhhhcccCCCEEEeeCCCCCCCCC-----------------------------------------
Q 009835 209 ---------------QVVAKLRSLKTLVLHSCALPPINP----------------------------------------- 232 (524)
Q Consensus 209 ---------------~~l~~l~~L~~L~L~~n~l~~~~~----------------------------------------- 232 (524)
..+.....|+.|++.+|.+.....
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 000111223444444332211100
Q ss_pred --Cchhhhcc----------------------cCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhh
Q 009835 233 --SSIWHFNL----------------------STSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288 (524)
Q Consensus 233 --~~~~~~~~----------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 288 (524)
........ +++|+.+++..+.... ..+...+...++++.++++.|.+.+..+..+
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc-ccccccccccccccccccccccccccccccc
Confidence 00011111 1344444554444433 2233334444589999999999998888899
Q ss_pred hcccccceEeecCcccc-cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CC
Q 009835 289 QLMVSLRFLYLTSNELE-GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LG 366 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~ 366 (524)
..+++|+.|++++|.+. +..|..|..+++|++|+|++|++++..|..|..++ +|++|+|++|++++..+. +.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~------~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTTSCCCBCCCGGGT
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC------CCCEEECCCCcCCCCChhHHh
Confidence 99999999999999854 45788899999999999999999999999988876 999999999999998887 89
Q ss_pred CCCCCcEEEccCCcCccccchhhhcC-CCCCEEECcCCcCeeeCCCC
Q 009835 367 GFSSLKILVLGENRLNGTIDKSLSQL-LKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 367 ~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~ 412 (524)
++++|++|+|++|++++..|..+.++ ++|++|++++|++.|.+...
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999999999999999999999988 68999999999999988743
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.7e-30 Score=256.08 Aligned_cols=287 Identities=19% Similarity=0.244 Sum_probs=236.0
Q ss_pred CcccceEeCCC---------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCC
Q 009835 71 CKWRGVRCSNK---------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSR 141 (524)
Q Consensus 71 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~ 141 (524)
|.|..+.|... ..+++.|+++++ .+++..+..+.++++|++|++++|.+++. .|..+.++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCC
Confidence 78999999632 247899999985 78887788999999999999999999986 7899999999
Q ss_pred CCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEE
Q 009835 142 LRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLV 221 (524)
Q Consensus 142 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 221 (524)
|++|++++|.+. .+|..+. ++|++|++++|.+..++. ..+.++++|++|++++|.++.....+..+..+ +|++|+
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 999999999988 4555554 899999999999997664 56899999999999999997532224566777 999999
Q ss_pred eeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecC
Q 009835 222 LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTS 301 (524)
Q Consensus 222 L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 301 (524)
+++|.+.+.... . .++|++|++++|.+.+ ..+..+... ++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 179 l~~n~l~~l~~~---~---~~~L~~L~l~~n~i~~-~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 179 ISEAKLTGIPKD---L---PETLNELHLDHNKIQA-IELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCSSBCSSCCSS---S---CSSCSCCBCCSSCCCC-CCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CcCCCCCccCcc---c---cCCCCEEECCCCcCCc-cCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 999999885442 2 2799999999999955 333444444 4999999999999988888899999999999999
Q ss_pred cccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCc--cCCCC-CCCCCCCcEEEccC
Q 009835 302 NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDIT--GPLPD-LGGFSSLKILVLGE 378 (524)
Q Consensus 302 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~--~~~~~-~~~l~~L~~L~Ls~ 378 (524)
|.++ .+|..+..+++|++|++++|.+++..+..|.........++|+.|++++|.+. +..+. +..+++|+.+++++
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 9999 78888999999999999999999888877765432223458999999999987 45555 88999999999999
Q ss_pred Cc
Q 009835 379 NR 380 (524)
Q Consensus 379 N~ 380 (524)
|+
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 85
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-29 Score=249.58 Aligned_cols=270 Identities=19% Similarity=0.226 Sum_probs=219.7
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEE
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLD 195 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 195 (524)
+++.++++++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+..+.. ..+.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEE
Confidence 57899999998886 666553 789999999999998888899999999999999999986543 6689999999999
Q ss_pred ccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEe
Q 009835 196 LSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNL 275 (524)
Q Consensus 196 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 275 (524)
+++|.++..+. .+ .++|++|++++|.+.+..+ ..+..+++|++|++++|.+......+..+...++|++|++
T Consensus 107 Ls~n~l~~l~~---~~--~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 107 LSKNQLKELPE---KM--PKTLQELRVHENEITKVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCSSCCSBCCS---SC--CTTCCEEECCSSCCCBBCH---HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCCcCCccCh---hh--cccccEEECCCCcccccCH---hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999987753 22 2789999999999987665 3333349999999999988432233334444559999999
Q ss_pred eccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCC
Q 009835 276 GFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355 (524)
Q Consensus 276 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 355 (524)
++|.++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++ +|++|++++
T Consensus 179 ~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~ 249 (330)
T 1xku_A 179 ADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHLNN 249 (330)
T ss_dssp CSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST------TCCEEECCS
T ss_pred CCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC------CCCEEECCC
Confidence 9999884 555443 7899999999999988888899999999999999999888777777765 899999999
Q ss_pred CCCccCCCCCCCCCCCcEEEccCCcCccccchhhhc------CCCCCEEECcCCcCee
Q 009835 356 NDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQ------LLKLESLSLGRNSFTG 407 (524)
Q Consensus 356 n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~l~~N~l~~ 407 (524)
|+++..+..+..+++|++|++++|++++..+..|.. .+.++.|++++|++..
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 999966556888999999999999998776666643 3678899999998863
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2e-29 Score=260.10 Aligned_cols=280 Identities=22% Similarity=0.198 Sum_probs=187.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+.+. + +++
T Consensus 42 ~~L~~L~Ls~n--------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 42 ATLTSLDCHNS--------SITD-MT-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TTCCEEECCSS--------CCCC-CT-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred CCCCEEEccCC--------Cccc-Ch-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 46777888874 5554 34 57778888888888888877 33 77788888888888887764 3 777
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+..++ +..+++|++|++++|.+++.+ +..+++|++|++++|...+..+ +... +
T Consensus 105 l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~----~~~l-~ 170 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKITKLD----VTPQ-T 170 (457)
T ss_dssp CTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSCCCCCC----CTTC-T
T ss_pred CCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCcccccc----cccC-C
Confidence 888888888888877643 677788888888888777652 5667777777777775433332 2233 6
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|++++ ++ +... ++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|++|+
T Consensus 171 ~L~~L~ls~n~l~~--l~--l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 171 QLTTLDCSFNKITE--LD--VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TCCEEECCSSCCCC--CC--CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cCCEEECCCCccce--ec--cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 77777777777744 22 2233 3677777777777653 25666777777777777765 44 56667777777
Q ss_pred ccCCCCCCchhHHHHhccC-----------------------CCCCCCccEEEcCCCCCccCCC---------CCCCCCC
Q 009835 323 LPYNKLSGDLSEMIQNLSG-----------------------GCTMNSLEGVCLEGNDITGPLP---------DLGGFSS 370 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~-----------------------~~~~~~L~~L~Ls~n~l~~~~~---------~~~~l~~ 370 (524)
+++|++++..+..+..+.. ...+++|+.|++++|...+.+| .+.++++
T Consensus 240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 7777776654433332210 0123567777777776554333 2566678
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
|+.|++++|++++. + +.++++|+.|++++|++++
T Consensus 320 L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 320 LVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 88888888888763 3 7778888888888888876
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=250.26 Aligned_cols=287 Identities=22% Similarity=0.228 Sum_probs=184.7
Q ss_pred CCCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEE
Q 009835 67 KRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLN 146 (524)
Q Consensus 67 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~ 146 (524)
....|.|.++ |+ .+++ .++ .+|..+. ++|++|++++|.+++. .+..+.++++|++|+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~--------~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSG--------SLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALV 82 (353)
T ss_dssp -CCEECTTSE-EE----------CCST--------TCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEE
T ss_pred cCCCCCCCeE-ee----------CCCC--------Ccc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEE
Confidence 4567888887 64 2332 333 4565554 4899999999999885 555899999999999
Q ss_pred ccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC
Q 009835 147 LSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA 226 (524)
Q Consensus 147 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 226 (524)
+++|.+.+..|..|.++++|++|++++|.++.++. ..+.++++|++|++++|.++..+. ...+..+++|++|++++|.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESS
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCc
Confidence 99999998888889999999999999999986553 557888999999999998887642 1356777788888887774
Q ss_pred -CCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 227 -LPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 227 -l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
+....+. .+... ++|++|++++|.+.+ ..+..+.... +|++|++++|.++...+..+..+++|+.|++++|.++
T Consensus 161 ~~~~~~~~--~~~~l-~~L~~L~l~~n~l~~-~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 161 TFTKIQRK--DFAGL-TFLEELEIDASDLQS-YEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp SCCEECTT--TTTTC-CEEEEEEEEETTCCE-ECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred cccccCHH--HccCC-CCCCEEECCCCCcCc-cCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 4443332 22223 666666666666533 2233333332 5666666666654322223334556666666666555
Q ss_pred cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccC----CCC-CCCCCCCcEEEccCCc
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP----LPD-LGGFSSLKILVLGENR 380 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~----~~~-~~~l~~L~~L~Ls~N~ 380 (524)
+..+..+. .. ...+.++.++++++.+++. +|. +..+++|+.|++++|+
T Consensus 236 ~~~~~~l~------------------------~~---~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 236 TFHFSELS------------------------TG---ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp TCCCC---------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred cccccccc------------------------cc---cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 43332221 11 0112444455555444431 122 5567778888888888
Q ss_pred Cccccchh-hhcCCCCCEEECcCCcCeeeCCC
Q 009835 381 LNGTIDKS-LSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 381 l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
++ .+|.. +.++++|++|++++|+++|.+|.
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 77 44444 57788888888888888887763
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.3e-29 Score=255.06 Aligned_cols=263 Identities=19% Similarity=0.124 Sum_probs=209.7
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
..+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+.+. | ++.+++|++|++++|.+.+++ +
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~----~ 102 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD----V 102 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----C
T ss_pred ccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee----c
Confidence 344568889999999999999997 45 689999999999999999875 3 899999999999999999763 7
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
.++++|++|++++|.+++.+ +..+++|++|++++|.+++.. +..+ ++|++|++++|...+ .+ .+..
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~-----l~~l-~~L~~L~l~~n~~~~-~~--~~~~ 168 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID-----VSHN-TQLTELDCHLNKKIT-KL--DVTP 168 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC-----CTTC-TTCCEEECTTCSCCC-CC--CCTT
T ss_pred CCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec-----cccC-CcCCEEECCCCCccc-cc--cccc
Confidence 89999999999999998863 789999999999999998852 3344 999999999996544 43 2334
Q ss_pred ccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
. ++|++|++++|++++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++++. | +.. +
T Consensus 169 l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~------l 232 (457)
T 3bz5_A 169 Q-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTP------L 232 (457)
T ss_dssp C-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTT------C
T ss_pred C-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccc------c
Confidence 4 499999999999996 45 78899999999999999965 388999999999999999984 3 444 4
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCC-------CCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFS-------SLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
++|+.|++++|++++.++. +.+++ +|+.|++++|.+.+.+| ++.+++|+.|++++|++.+.+|
T Consensus 233 ~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 4899999999999886543 43333 44555555555555554 3455666666666666655555
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=252.57 Aligned_cols=279 Identities=22% Similarity=0.220 Sum_probs=206.9
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCC
Q 009835 112 LKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191 (524)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 191 (524)
..++.....+.+++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+..+.. ..+.++++|
T Consensus 28 ~~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred CCCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCCC
Confidence 345555668889999887 676554 589999999999988777789999999999999998885543 457778888
Q ss_pred cEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccccc
Q 009835 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271 (524)
Q Consensus 192 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 271 (524)
++|++++|.++..+ ...+..+++|++|++++|.+...... ..+...++|+
T Consensus 103 ~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~----------------------------~~~~~l~~L~ 152 (353)
T 2z80_A 103 EHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGET----------------------------SLFSHLTKLQ 152 (353)
T ss_dssp CEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSS----------------------------CSCTTCTTCC
T ss_pred CEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCch----------------------------hhhccCCCCc
Confidence 88888888877664 23456666666666666655433220 1122223677
Q ss_pred EEEeecc-ccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccE
Q 009835 272 YLNLGFN-SLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350 (524)
Q Consensus 272 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 350 (524)
+|++++| .+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++......+..++ +|+.
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------~L~~ 226 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS------SVEC 226 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT------TEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc------cccE
Confidence 7777776 35545566777788888888888888877788888888888888888888655554455544 8889
Q ss_pred EEcCCCCCccCCCC----CCCCCCCcEEEccCCcCcc----ccchhhhcCCCCCEEECcCCcCeeeCCCC--Cccccccc
Q 009835 351 VCLEGNDITGPLPD----LGGFSSLKILVLGENRLNG----TIDKSLSQLLKLESLSLGRNSFTGKIPLG--TQLQSFNA 420 (524)
Q Consensus 351 L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~ 420 (524)
|++++|.+++..+. ....+.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+..
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCE
Confidence 99999888876543 3456789999999999886 37888999999999999999999 66654 45778888
Q ss_pred ccccCCCCCCCC
Q 009835 421 SVYAGNPELCGL 432 (524)
Q Consensus 421 ~~~~gn~~~C~~ 432 (524)
..+.+|++.|+.
T Consensus 306 L~L~~N~~~~~~ 317 (353)
T 2z80_A 306 IWLHTNPWDCSC 317 (353)
T ss_dssp EECCSSCBCCCH
T ss_pred EEeeCCCccCcC
Confidence 899999999964
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.7e-28 Score=260.68 Aligned_cols=286 Identities=24% Similarity=0.242 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCCCcccceEeC------CCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCC
Q 009835 57 VLSSWGKDNDKRDCCKWRGVRCS------NKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGS 130 (524)
Q Consensus 57 ~~~~W~~~~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 130 (524)
....|. .+.++|.|.|..|. .....++.|+++++ .++ .+|..+. ++|++|++++|.++.
T Consensus 11 ~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~~- 75 (622)
T 3g06_A 11 VWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS- 75 (622)
T ss_dssp HHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCSC-
T ss_pred HHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCCC-
Confidence 345676 46788999664221 11235889999995 565 6777665 899999999999986
Q ss_pred CCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHh
Q 009835 131 PLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQV 210 (524)
Q Consensus 131 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 210 (524)
+|. .+++|++|+|++|.+++ +|. .+++|++|++++|.+..++. .+++|++|++++|.++..+.
T Consensus 76 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~---- 138 (622)
T 3g06_A 76 -LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV---- 138 (622)
T ss_dssp -CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC----
T ss_pred -CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC----
Confidence 666 57999999999999875 554 78999999999999997654 67899999999999998764
Q ss_pred hhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhc
Q 009835 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290 (524)
Q Consensus 211 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 290 (524)
.+++|++|++++|.+.+... .+.+|+.|++++|.++ .++ ..+++|+.|++++|.+++ +|. .
T Consensus 139 --~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~--~l~----~~~~~L~~L~Ls~N~l~~-l~~---~ 199 (622)
T 3g06_A 139 --LPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLT--SLP----MLPSGLQELSVSDNQLAS-LPT---L 199 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred --CCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCC--CCc----ccCCCCcEEECCCCCCCC-CCC---c
Confidence 24899999999999987543 2388999999999994 444 334599999999999985 443 3
Q ss_pred ccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCC
Q 009835 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370 (524)
Q Consensus 291 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~ 370 (524)
+++|+.|++++|.++ .+|. .+++|++|++++|.+++.. . .+++|+.|++++|+++..++ .+++
T Consensus 200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp----~------~l~~L~~L~Ls~N~L~~lp~---~~~~ 262 (622)
T 3g06_A 200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP----V------LPSELKELMVSGNRLTSLPM---LPSG 262 (622)
T ss_dssp CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC----C------CCTTCCEEECCSSCCSCCCC---CCTT
T ss_pred cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC----C------CCCcCcEEECCCCCCCcCCc---cccc
Confidence 578999999999998 4554 3579999999999998743 1 23589999999999996544 6789
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
|+.|+|++|+++ .+|..+.++++|+.|++++|++++.+|.
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 999999999999 7799999999999999999999987774
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.6e-29 Score=243.15 Aligned_cols=253 Identities=21% Similarity=0.226 Sum_probs=170.9
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-chhcCCCCCCcEEEc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGS-LQWLSHLSSLRHLDL 196 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L 196 (524)
+.++.+++.++. +|..+. ++|++|++++|.+....+..|.++++|++|++++|.+...+. +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 568888888776 565443 678888888888775555557788888888888877764321 133445666777777
Q ss_pred cCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEee
Q 009835 197 SYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLG 276 (524)
Q Consensus 197 s~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 276 (524)
++|.+...+ ..+..+++|++|++++|.+.+..+. ..+.. .++|++|+++
T Consensus 86 s~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------~~~~~-l~~L~~L~l~ 134 (306)
T 2z66_A 86 SFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEF---------------------------SVFLS-LRNLIYLDIS 134 (306)
T ss_dssp CSCSEEEEE---EEEETCTTCCEEECTTSEEESSTTT---------------------------TTTTT-CTTCCEEECT
T ss_pred CCCccccCh---hhcCCCCCCCEEECCCCcccccccc---------------------------hhhhh-ccCCCEEECC
Confidence 666655432 2344444555555544444332220 12222 2367777777
Q ss_pred ccccccccchhhhcccccceEeecCccccc-ccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCC
Q 009835 277 FNSLQGSIPEAFQLMVSLRFLYLTSNELEG-GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEG 355 (524)
Q Consensus 277 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 355 (524)
+|.+++..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..++ +|++|++++
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~ 208 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSH 208 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTT
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------CCCEEECCC
Confidence 777666666667777777777777777765 4666777777788888888877776666666554 788888888
Q ss_pred CCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC-CCCEEECcCCcCeeeCCC
Q 009835 356 NDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 356 n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~ 411 (524)
|.+++..+. +..+++|+.|++++|++++..|..+..++ +|++|++++|++++.++.
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 888776664 77788888888888888888888888774 888888888888876653
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.8e-27 Score=243.76 Aligned_cols=249 Identities=25% Similarity=0.259 Sum_probs=112.2
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++|++|++++|.+++ +| .++++++|++|++++|.+.+ +|..+ .+|++|++++|.+..++ .+.++++|++|
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~---~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP---ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC---CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc---cccCCCCCCEE
Confidence 456666666666654 44 35666666666666665554 33322 35666666666555433 25555566666
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.+++.+.. .++|++|++++|.+... |. +... ++|++|++++|++.+ ++.. .++|++|+
T Consensus 201 ~l~~N~l~~l~~~------~~~L~~L~l~~n~l~~l-p~---~~~l-~~L~~L~l~~N~l~~--l~~~----~~~L~~L~ 263 (454)
T 1jl5_A 201 YADNNSLKKLPDL------PLSLESIVAGNNILEEL-PE---LQNL-PFLTTIYADNNLLKT--LPDL----PPSLEALN 263 (454)
T ss_dssp ECCSSCCSSCCCC------CTTCCEEECCSSCCSSC-CC---CTTC-TTCCEEECCSSCCSS--CCSC----CTTCCEEE
T ss_pred ECCCCcCCcCCCC------cCcccEEECcCCcCCcc-cc---cCCC-CCCCEEECCCCcCCc--cccc----ccccCEEE
Confidence 6666555554321 13555555555555422 21 2222 555555555555522 2221 13455555
Q ss_pred eeccccccccchhhhcccccceEeecCcccccc--cch-------------hhcCC-CCCCEEEccCCCCCCchhHHHHh
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG--IPK-------------FFGKM-CSLNRLCLPYNKLSGDLSEMIQN 338 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~-------------~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 338 (524)
+++|.+++ +|.. +++|+.|++++|.+++. .|. .+..+ ++|++|++++|++++. |..
T Consensus 264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~~--- 335 (454)
T 1jl5_A 264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PAL--- 335 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CCC---
T ss_pred CCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-ccc---
Confidence 55555543 2221 24455555555554431 110 01112 3555555555555432 111
Q ss_pred ccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcc--ccchhhhcC-------------CCCCEEECcCC
Q 009835 339 LSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNG--TIDKSLSQL-------------LKLESLSLGRN 403 (524)
Q Consensus 339 l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~l~~N 403 (524)
+++|++|++++|++++.+. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|
T Consensus 336 ------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 336 ------PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp ------CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred ------CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 1255556666555553222 34556666666666555 455555544 55555666666
Q ss_pred cCee
Q 009835 404 SFTG 407 (524)
Q Consensus 404 ~l~~ 407 (524)
++++
T Consensus 407 ~l~~ 410 (454)
T 1jl5_A 407 PLRE 410 (454)
T ss_dssp ----
T ss_pred cCCc
Confidence 5554
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.2e-28 Score=239.35 Aligned_cols=276 Identities=23% Similarity=0.247 Sum_probs=204.6
Q ss_pred EEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCcc--CCccccCCC
Q 009835 87 VLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLK--VPRPFQYLS 164 (524)
Q Consensus 87 ~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~l~ 164 (524)
.++.++. .++ .+|..+. ++|++|++++|.++.. .+..+.++++|++|+|++|.+... .|..+..++
T Consensus 11 ~l~c~~~--------~l~-~ip~~~~--~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 11 EIRCNSK--------GLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp EEECCSS--------CCS-SCCSCCC--TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred EEEcCCC--------Ccc-cCCCCCC--CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence 5777774 343 4555443 6899999999999974 445689999999999999998743 367788899
Q ss_pred CCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc
Q 009835 165 GLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244 (524)
Q Consensus 165 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 244 (524)
+|++|++++|.+..++ ..+..+++|++|++++|.++..+. ...+..+++|++|++++|.+.+..+.
T Consensus 79 ~L~~L~Ls~n~i~~l~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 144 (306)
T 2z66_A 79 SLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG----------- 144 (306)
T ss_dssp CCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTT-----------
T ss_pred ccCEEECCCCccccCh--hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchh-----------
Confidence 9999999999988544 458899999999999999987753 24566777777777777765544332
Q ss_pred cEEEccCCCCCCCCCCchhhhccccccEEEeecccccc-ccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQG-SIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
.+ ...++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 145 -----------------~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 145 -----------------IF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp -----------------TT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----------------hc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 11 112366667776666665 46667777888888888888888777778888888888888
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCC-CCcEEEccCCcCccccc--hhhhcCCCCCEEE
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFS-SLKILVLGENRLNGTID--KSLSQLLKLESLS 399 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~ 399 (524)
++|.+++..+..+..++ +|++|++++|.+++..+. +..++ +|++|++++|.+++..+ ....-+...+.+.
T Consensus 207 ~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~ 280 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLN------SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280 (306)
T ss_dssp TTSCCSBCCSGGGTTCT------TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred CCCccCccChhhccCcc------cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence 88888877666666554 888999999988887776 77774 89999999999986532 1122233445566
Q ss_pred CcCCcCeeeCCCC
Q 009835 400 LGRNSFTGKIPLG 412 (524)
Q Consensus 400 l~~N~l~~~~p~~ 412 (524)
+..+.+.+..|..
T Consensus 281 ~~~~~~~C~~p~~ 293 (306)
T 2z66_A 281 VEVERMECATPSD 293 (306)
T ss_dssp SCGGGCBEEESGG
T ss_pred ccccccccCCchh
Confidence 6777888877754
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.6e-27 Score=242.18 Aligned_cols=239 Identities=21% Similarity=0.225 Sum_probs=142.4
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. +++++|+|++|.+++. .+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+..++. ..+
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 143 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-GAF 143 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-TTS
T ss_pred ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-hhh
Confidence 3554443 5788888888888775 56777788888888888887777777777777777777777777664443 334
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
.++++|++|++++|.+... .+ ..+..+++|++|++++|...+ .++...
T Consensus 144 ~~l~~L~~L~L~~N~l~~~--------------------------~~---~~~~~l~~L~~L~l~~~~~l~-~i~~~~-- 191 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESI--------------------------PS---YAFNRVPSLMRLDLGELKKLE-YISEGA-- 191 (452)
T ss_dssp SSCTTCCEEECCSCCCCEE--------------------------CT---TTTTTCTTCCEEECCCCTTCC-EECTTT--
T ss_pred cccCCCCEEECCCCCccee--------------------------CH---hHHhcCCcccEEeCCCCCCcc-ccChhh--
Confidence 4555555555555544332 22 112222666666666643322 333332
Q ss_pred ccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
+..+++|++|++++|.+++ +| .+..+++|++|+|++|.+++..+..|..++
T Consensus 192 ----------------------~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 242 (452)
T 3zyi_A 192 ----------------------FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS----- 242 (452)
T ss_dssp ----------------------TTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----
T ss_pred ----------------------ccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCcc-----
Confidence 3344444445555544442 22 244555555555555555555555555443
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|+.|++++|++++..+. +.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 243 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 243 -SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred -CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 566666666666655554 6666677777777777765555666667777777777777766554
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=241.17 Aligned_cols=240 Identities=23% Similarity=0.218 Sum_probs=145.4
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
.+|..+. +++++|+|++|.++.. .+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++.++. ..+
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-GAF 132 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-TTS
T ss_pred cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-hHh
Confidence 4555443 5677788887777765 55667777777777777777776666667677777777777666664432 334
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
..+++|++|++++|.+.. ..+. .+..+ ++|++|++++|...+ .+++.
T Consensus 133 ~~l~~L~~L~L~~N~i~~--------------------------~~~~--~~~~l-~~L~~L~l~~~~~l~-~i~~~--- 179 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIES--------------------------IPSY--AFNRI-PSLRRLDLGELKRLS-YISEG--- 179 (440)
T ss_dssp CSCSSCCEEECCSCCCCE--------------------------ECTT--TTTTC-TTCCEEECCCCTTCC-EECTT---
T ss_pred hccccCceeeCCCCcccc--------------------------cCHH--HhhhC-cccCEeCCCCCCCcc-eeCcc---
Confidence 444455555544444332 2221 12222 666666666643322 33332
Q ss_pred ccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCC
Q 009835 266 LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTM 345 (524)
Q Consensus 266 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 345 (524)
.+..+++|++|++++|.++ .+| .+..+++|++|+|++|.+++..+..|..++
T Consensus 180 ---------------------~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 231 (440)
T 3zyj_A 180 ---------------------AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----- 231 (440)
T ss_dssp ---------------------TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----
T ss_pred ---------------------hhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----
Confidence 3444455555555555554 233 245556666666666666655555555544
Q ss_pred CCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 346 NSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 346 ~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
+|+.|++++|++++..+. +.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus 232 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 232 -HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp -TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred -cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 666666666666666554 67777778888888877766666777778888888888887776653
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.1e-27 Score=244.11 Aligned_cols=227 Identities=26% Similarity=0.249 Sum_probs=154.0
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+|+++ .+++..+..|.++++|++|+|++|.+++. .+..|.++++|++|+|++|.+.+..+..|.+
T Consensus 75 ~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCccEEECcCC--------cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 57899999995 88888899999999999999999999986 7789999999999999999999888888999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
+++|++|+|++|.+..++. ..+.++++|++|++++|. +...+ ...+..+++|++|++++|.+.+... +...
T Consensus 146 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l- 217 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDMPN----LTPL- 217 (452)
T ss_dssp CTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTTSCCSSCCC----CTTC-
T ss_pred cCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCCCccccccc----cccc-
Confidence 9999999999999986654 568899999999999854 43333 2356666666666666666654421 1222
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+.+ +++..+...++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus 218 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 218 VGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TTCCEEECTTSCCSE--ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccEEECcCCcCcc--cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 455555555555522 222222222245555555555544444444444555555555555544444444444445555
Q ss_pred EccCCCC
Q 009835 322 CLPYNKL 328 (524)
Q Consensus 322 ~Ls~n~l 328 (524)
+|++|.+
T Consensus 296 ~L~~Np~ 302 (452)
T 3zyi_A 296 HLHHNPW 302 (452)
T ss_dssp ECCSSCE
T ss_pred EccCCCc
Confidence 5554443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-27 Score=230.82 Aligned_cols=209 Identities=22% Similarity=0.157 Sum_probs=122.3
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.++.++. .++ .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|.+.+..|..|.++++
T Consensus 14 ~~~~c~~~--------~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQ--------GLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSS--------CCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eEEEcCcC--------Ccc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 45667664 333 344433 46788888888888775 5567788888888888888888777777888888
Q ss_pred CcEEEccCCC-CCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcc
Q 009835 166 LVYLHLENSN-LFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSI 244 (524)
Q Consensus 166 L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 244 (524)
|++|++++|. +..+.. ..+..+++|++|++++|.++... +..+..+++|++|++++|.+.+..+
T Consensus 82 L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~------------ 146 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD------------ 146 (285)
T ss_dssp CCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred CCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCH------------
Confidence 8888888886 554432 45666677777777776666553 2344555555555555555444333
Q ss_pred cEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEcc
Q 009835 245 ETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLP 324 (524)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 324 (524)
..+...++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 147 -----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 147 -----------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 211112244444444444443333344445555555555555554445555555555555555
Q ss_pred CCCCCCchhHHHHh
Q 009835 325 YNKLSGDLSEMIQN 338 (524)
Q Consensus 325 ~n~l~~~~~~~~~~ 338 (524)
+|.+++..+..+..
T Consensus 210 ~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 210 ANNLSALPTEALAP 223 (285)
T ss_dssp SSCCSCCCHHHHTT
T ss_pred CCcCCcCCHHHccc
Confidence 55555444444433
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=242.60 Aligned_cols=228 Identities=28% Similarity=0.275 Sum_probs=160.1
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.|+|+++ .+++..+..|.++++|++|+|++|.++.. .+..|.++++|++|+|++|.+....+..|.+
T Consensus 64 ~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSC--------CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCcEEEccCC--------cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 56788999985 78888889999999999999999999986 6789999999999999999999888888999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC-CCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN-LTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
+++|++|+|++|.+..++. ..+.++++|++|++++|. +...+ ...+.++++|++|++++|.++.... +...
T Consensus 135 l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l- 206 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAMCNLREIPN----LTPL- 206 (440)
T ss_dssp CSSCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC--TTTTTTCSSCCEEECTTSCCSSCCC----CTTC-
T ss_pred cccCceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcceeC--cchhhcccccCeecCCCCcCccccc----cCCC-
Confidence 9999999999999986654 568899999999999854 33333 2456677777777777776664422 2222
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+++ +++..+...++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 207 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 207 IKLDELDLSGNHLSA--IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp SSCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred cccCEEECCCCccCc--cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 556666666665532 222222223355555555555555555555555555555555555554444455555555555
Q ss_pred EccCCCCC
Q 009835 322 CLPYNKLS 329 (524)
Q Consensus 322 ~Ls~n~l~ 329 (524)
+|++|.+.
T Consensus 285 ~L~~Np~~ 292 (440)
T 3zyj_A 285 HLHHNPWN 292 (440)
T ss_dssp ECCSSCEE
T ss_pred EcCCCCcc
Confidence 55555543
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.1e-26 Score=235.10 Aligned_cols=201 Identities=24% Similarity=0.264 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ .+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .|++
T Consensus 91 ~~L~~L~l~~n--------~l~~-lp~~---~~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCN--------SLTE-LPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp TTCSEEECCSS--------CCSS-CCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCCCEEEccCC--------cCCc-cccc---cCCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 46788888874 5665 5543 3789999999998886 3432 2689999999999886 66 5999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|++.+++. ...+|++|++++|.+++.+ .+..+++|++|++++|.+.+.... .+
T Consensus 152 l~~L~~L~l~~N~l~~lp~-----~~~~L~~L~L~~n~l~~l~----~~~~l~~L~~L~l~~N~l~~l~~~-------~~ 215 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLKKLPDL-------PL 215 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSSCCCC-------CT
T ss_pred CCCCCEEECCCCcCcccCC-----CcccccEEECcCCcCCcCc----cccCCCCCCEEECCCCcCCcCCCC-------cC
Confidence 9999999999999886553 2359999999999998864 478899999999999998874331 26
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+. .++. +... ++|++|++++|++++ +|. .+++|+.|++++|.+++ +|.. .++|++|+
T Consensus 216 ~L~~L~l~~n~l~--~lp~-~~~l-~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 216 SLESIVAGNNILE--ELPE-LQNL-PFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp TCCEEECCSSCCS--SCCC-CTTC-TTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cccEEECcCCcCC--cccc-cCCC-CCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 8999999999984 4553 4444 499999999999985 443 24789999999999985 5543 37899999
Q ss_pred ccCCCCCC
Q 009835 323 LPYNKLSG 330 (524)
Q Consensus 323 Ls~n~l~~ 330 (524)
+++|.+++
T Consensus 284 ls~N~l~~ 291 (454)
T 1jl5_A 284 VSENIFSG 291 (454)
T ss_dssp CCSSCCSE
T ss_pred CcCCccCc
Confidence 99998886
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.1e-27 Score=228.78 Aligned_cols=231 Identities=26% Similarity=0.297 Sum_probs=149.6
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCC-CCCCCCCchhhhccc
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLSR 268 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 268 (524)
+|++|++++|.++..+ +..+..+++|++|++++|.+.+..+. .+..+ ++|++|++++|. +. .+++..+...+
T Consensus 33 ~l~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~~l~--~~~~~~~~~l~ 105 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARIDAA--AFTGL-ALLEQLDLSDNAQLR--SVDPATFHGLG 105 (285)
T ss_dssp TCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTT--TTTTC-TTCCEEECCSCTTCC--CCCTTTTTTCT
T ss_pred CceEEEeeCCcCCccC--HHHcccCCCCCEEECCCCccceeCHh--hcCCc-cCCCEEeCCCCCCcc--ccCHHHhcCCc
Confidence 4444444444443332 12344444444445544444444332 22222 556666666664 42 23222223333
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L 179 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SL 179 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc------cc
Confidence 777777777777766666777777888888888888766666677788888888888888766666666554 78
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCC
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNP 427 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~ 427 (524)
++|++++|.+++..+. +..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.++.......+.......+.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~ 259 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCc
Confidence 8888888888877665 888889999999999998777777888999999999999998877754444444444455555
Q ss_pred CCCCCC
Q 009835 428 ELCGLP 433 (524)
Q Consensus 428 ~~C~~~ 433 (524)
..|..|
T Consensus 260 ~~c~~p 265 (285)
T 1ozn_A 260 VPCSLP 265 (285)
T ss_dssp CBEEES
T ss_pred cccCCc
Confidence 555433
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.7e-28 Score=238.38 Aligned_cols=227 Identities=22% Similarity=0.357 Sum_probs=172.7
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
.+++.|+++++ |.+.+.+|..+.++++|++|++++|.+++. +|..+.++++|++|++++|.+.+.+|..+.+
T Consensus 76 ~~L~~L~L~~~-------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 76 PYLNFLYIGGI-------NNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp TTCSEEEEEEE-------TTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CCCCeeeCCCC-------CcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 46888999842 378999999999999999999999999976 8999999999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLST 242 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 242 (524)
+++|++|++++|.+.+... . .+..++ +
T Consensus 148 l~~L~~L~L~~N~l~~~~p-~--------------------------~l~~l~--------------------------~ 174 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIP-D--------------------------SYGSFS--------------------------K 174 (313)
T ss_dssp CTTCCEEECCSSCCEEECC-G--------------------------GGGCCC--------------------------T
T ss_pred CCCCCeEECcCCcccCcCC-H--------------------------HHhhhh--------------------------h
Confidence 9999999998887762111 1 222222 1
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
+|++|++++|.+.+ .++..+... .|++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|+
T Consensus 175 ~L~~L~L~~N~l~~-~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 175 LFTSMTISRNRLTG-KIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp TCCEEECCSSEEEE-ECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred cCcEEECcCCeeec-cCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 44444444444433 333433333 399999999999999999999999999999999999976665 77788888888
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENR 380 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~ 380 (524)
+++|.+++..|..+..++ +|++|++++|++++.+|....+++|+.|++++|.
T Consensus 251 Ls~N~l~~~~p~~l~~l~------~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLK------FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSCCEECCCGGGGGCT------TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcCCcccCcCChHHhcCc------CCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 888888777777766654 6666666666666655555555555555555554
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-26 Score=229.57 Aligned_cols=235 Identities=21% Similarity=0.216 Sum_probs=165.8
Q ss_pred CCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCc
Q 009835 113 KLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR 192 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 192 (524)
..+++++|+|++|.++. +|..+.++++|++|+|++|.+. .+|..++++++|++|+|++|.+..++ ..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTCC
T ss_pred cccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCCC
Confidence 45789999999999985 7888888999999999999988 78888899999999999999888543 5577788888
Q ss_pred EEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccE
Q 009835 193 HLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQY 272 (524)
Q Consensus 193 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 272 (524)
+|++++|.+.+.. +..+.. ..+ .+ .+ ..+++|++|++++|.+ ..+|..+.... +|++
T Consensus 154 ~L~L~~n~~~~~~--p~~~~~------~~~-----~~------~~-~~l~~L~~L~L~~n~l--~~lp~~l~~l~-~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTEL--PEPLAS------TDA-----SG------EH-QGLVNLQSLRLEWTGI--RSLPASIANLQ-NLKS 210 (328)
T ss_dssp EEEEEEETTCCCC--CSCSEE------EC------CC------CE-EESTTCCEEEEEEECC--CCCCGGGGGCT-TCCE
T ss_pred EEECCCCCCcccc--ChhHhh------ccc-----hh------hh-ccCCCCCEEECcCCCc--CcchHhhcCCC-CCCE
Confidence 8888876655432 112211 000 00 11 1226666666666666 34555554444 7777
Q ss_pred EEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEE
Q 009835 273 LNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVC 352 (524)
Q Consensus 273 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 352 (524)
|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|+
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~------~L~~L~ 283 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT------QLEKLD 283 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT------TCCEEE
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC------CCCEEe
Confidence 7777777764 455677777777777777777777777777777777777777777777777666654 777777
Q ss_pred cCCCCCccCCCC-CCCCCCCcEEEccCCcCc
Q 009835 353 LEGNDITGPLPD-LGGFSSLKILVLGENRLN 382 (524)
Q Consensus 353 Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 382 (524)
+++|.+.+.+|. +.++++|+.+++..+.+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777776666 777777777777766554
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.6e-29 Score=262.05 Aligned_cols=332 Identities=20% Similarity=0.182 Sum_probs=181.1
Q ss_pred cEEEEEcCCCCCCCCCCCccee----ecCccccCCCCCCEEEccCCCCCCCCCccccCCCC----CCCEEEccCCCCCc-
Q 009835 84 HVKVLNLRRSDDENSRGTVLKG----TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLS----RLRYLNLSCGTSLL- 154 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~----~L~~L~L~~n~~~~- 154 (524)
+++.|+|+++ .+++ .++..+..+++|++|++++|.+++.........++ +|++|+|++|.+..
T Consensus 29 ~L~~L~L~~~--------~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 29 QCQVVRLDDC--------GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp TCSEEEEESS--------CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred CccEEEccCC--------CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 4556666664 3332 34555666677777777777665431222223344 57777777776663
Q ss_pred ---cCCccccCCCCCcEEEccCCCCCCCCCc----hhcCCCCCCcEEEccCCCCCCCC--CchHhhhcccCCCEEEeeCC
Q 009835 155 ---KVPRPFQYLSGLVYLHLENSNLFSLGSL----QWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l~~L~~L~L~~n 225 (524)
.++..+.++++|++|++++|.+...... ......++|++|++++|.++... .++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 4466666777777777777765422111 01223456777777777666542 22345556677777777777
Q ss_pred CCCCCCCCchhhhc----ccCcccEEEccCCCCCCCC---CCchhhhccccccEEEeeccccccccch-----hhhcccc
Q 009835 226 ALPPINPSSIWHFN----LSTSIETLDLSDNNLPSSS---VYPWLFNLSRNIQYLNLGFNSLQGSIPE-----AFQLMVS 293 (524)
Q Consensus 226 ~l~~~~~~~~~~~~----~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~ 293 (524)
.+.+..+. .+.. ..++|++|++++|.+++.. ++..+. ..++|++|++++|.+++.... .+..+++
T Consensus 181 ~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 181 DINEAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp BCHHHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CcchHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 65433221 1111 1246777777777664311 122222 233677777777766543221 1224566
Q ss_pred cceEeecCcccccc----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-
Q 009835 294 LRFLYLTSNELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD- 364 (524)
Q Consensus 294 L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~- 364 (524)
|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...-. ...++|++|++++|.+++.. +.
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-EPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-cCCccceeeEcCCCCCchHHHHHHHHH
Confidence 77777777766643 4555666677777777777666555544443210 01136777777777666542 22
Q ss_pred CCCCCCCcEEEccCCcCccccchhhhc-----CCCCCEEECcCCcCee----eCCCC-CcccccccccccCCC
Q 009835 365 LGGFSSLKILVLGENRLNGTIDKSLSQ-----LLKLESLSLGRNSFTG----KIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 365 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~----~~p~~-~~~~~~~~~~~~gn~ 427 (524)
+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|.. .....+....+.+|+
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 445566777777777666554444432 4567777777776664 33321 123444445555554
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-28 Score=242.16 Aligned_cols=257 Identities=21% Similarity=0.183 Sum_probs=162.4
Q ss_pred cceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCC
Q 009835 102 VLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGS 181 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 181 (524)
.+...+...+..+++|++|++++|.+++. .|..+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+.+++
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~- 96 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL- 96 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-
Confidence 44433334444555666666666666654 45566666666666666666654433 555555566655555544221
Q ss_pred chhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCc
Q 009835 182 LQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYP 261 (524)
Q Consensus 182 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 261 (524)
..+ +|++|++++|.+.+..+. .+ ++|++|++++|.+.+ +++
T Consensus 97 -----~~~--------------------------~L~~L~l~~n~l~~~~~~-----~~-~~L~~L~l~~N~l~~--~~~ 137 (317)
T 3o53_A 97 -----VGP--------------------------SIETLHAANNNISRVSCS-----RG-QGKKNIYLANNKITM--LRD 137 (317)
T ss_dssp -----ECT--------------------------TCCEEECCSSCCSEEEEC-----CC-SSCEEEECCSSCCCS--GGG
T ss_pred -----CCC--------------------------CcCEEECCCCccCCcCcc-----cc-CCCCEEECCCCCCCC--ccc
Confidence 224 444444444444433221 12 567777777777733 333
Q ss_pred hhhhccccccEEEeeccccccccchhh-hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhcc
Q 009835 262 WLFNLSRNIQYLNLGFNSLQGSIPEAF-QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS 340 (524)
Q Consensus 262 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 340 (524)
..+...++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+. +..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccC
Confidence 233333478888888887776666655 3678888888888888754 32 33478888888888888865444 66554
Q ss_pred CCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCc-cccchhhhcCCCCCEEECcCC-cCeeeCC
Q 009835 341 GGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLN-GTIDKSLSQLLKLESLSLGRN-SFTGKIP 410 (524)
Q Consensus 341 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~p 410 (524)
+|+.|++++|++++.++.+..+++|+.|++++|.+. +.+|..+..+++|+.+++++| .+.|..|
T Consensus 215 ------~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 215 ------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ------cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 788888888888866555888888888888888888 677788888888888888743 4444433
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.5e-28 Score=254.71 Aligned_cols=308 Identities=21% Similarity=0.218 Sum_probs=233.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCcccc-CCC----CCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALL-KLH----DLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLL 154 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~----~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~ 154 (524)
.+++.|+|+++ .+.+..+..+. .++ +|++|++++|.++.. .++..+..+++|++|++++|.+.+
T Consensus 56 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 56 PALAELNLRSN--------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTCCEEECTTC--------CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCcCEEeCCCC--------cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 57899999995 56554443333 344 799999999999852 158889999999999999999876
Q ss_pred cCCcccc-----CCCCCcEEEccCCCCCCCCC---chhcCCCCCCcEEEccCCCCCCCCCchHhhh-----cccCCCEEE
Q 009835 155 KVPRPFQ-----YLSGLVYLHLENSNLFSLGS---LQWLSHLSSLRHLDLSYINLTKSSDWFQVVA-----KLRSLKTLV 221 (524)
Q Consensus 155 ~~p~~~~-----~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-----~l~~L~~L~ 221 (524)
..+..+. ..++|++|++++|.+..... ...+..+++|++|++++|.+++.. ...+. ..++|++|+
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH--HHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH--HHHHHHHHhcCCCCceEEE
Confidence 5444332 36789999999999875331 244667899999999999987542 12222 356999999
Q ss_pred eeCCCCCCCCCC--chhhhcccCcccEEEccCCCCCCCCCC----chhhhccccccEEEeeccccccc----cchhhhcc
Q 009835 222 LHSCALPPINPS--SIWHFNLSTSIETLDLSDNNLPSSSVY----PWLFNLSRNIQYLNLGFNSLQGS----IPEAFQLM 291 (524)
Q Consensus 222 L~~n~l~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l 291 (524)
+++|.+.+.... ...+... ++|++|++++|.+.+ ... +.+....++|++|++++|.+++. ++..+..+
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred ccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCCh-HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 999988764211 0123344 999999999998844 211 22222345999999999999864 57778889
Q ss_pred cccceEeecCcccccccchhhcC-----CCCCCEEEccCCCCCCch----hHHHHhccCCCCCCCccEEEcCCCCCccCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGK-----MCSLNRLCLPYNKLSGDL----SEMIQNLSGGCTMNSLEGVCLEGNDITGPL 362 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~ 362 (524)
++|++|++++|.+.+..+..+.. .++|++|++++|.+++.. +..+..++ +|++|++++|.+++..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~------~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR------FLLELQISNNRLEDAG 357 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS------SCCEEECCSSBCHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC------CccEEEccCCcccccc
Confidence 99999999999998655544443 369999999999998763 45555545 9999999999998754
Q ss_pred CC-C----C-CCCCCcEEEccCCcCcc----ccchhhhcCCCCCEEECcCCcCeee
Q 009835 363 PD-L----G-GFSSLKILVLGENRLNG----TIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 363 ~~-~----~-~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
+. + . ..++|++|++++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 32 2 2 26899999999999986 7888899999999999999998853
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.4e-27 Score=243.42 Aligned_cols=233 Identities=20% Similarity=0.140 Sum_probs=112.2
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEE
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 220 (524)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+.+... +..+++|++|++++|.+++.+ ..++|++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-------~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-------VGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-------ECTTCCEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-------CCCCcCEE
Confidence 45555555555555545555555555555555555543221 455555555555555544332 12455555
Q ss_pred EeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh-cccccceEee
Q 009835 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYL 299 (524)
Q Consensus 221 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L 299 (524)
++++|.+.+..+. .+ ++|++|++++|.+++ ..+..+... ++|+.|++++|.+++..|..+. .+++|+.|+|
T Consensus 105 ~L~~N~l~~~~~~-----~l-~~L~~L~L~~N~l~~-~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 105 HAANNNISRVSCS-----RG-QGKKNIYLANNKITM-LRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp ECCSSCCCCEEEC-----CC-SSCEEEECCSSCCCS-GGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred ECcCCcCCCCCcc-----cc-CCCCEEECCCCCCCC-CCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 5555554443321 11 455555555555533 222222222 2555555555555554454443 4555555555
Q ss_pred cCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCC
Q 009835 300 TSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGEN 379 (524)
Q Consensus 300 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N 379 (524)
++|.+++..+ +..+++|++|+|++|.+++.++. +..++ +|+.|++++|.+++.++.+..+++|+.|++++|
T Consensus 177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~------~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC------CccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 5555553321 22355555555555555543332 33333 555555555555544333445555555555555
Q ss_pred cCc-cccchhhhcCCCCCEEEC
Q 009835 380 RLN-GTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 380 ~l~-~~~p~~~~~l~~L~~L~l 400 (524)
.+. +.+|..+..++.|+.+++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEec
Confidence 554 334444444444444433
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.1e-28 Score=238.93 Aligned_cols=251 Identities=21% Similarity=0.147 Sum_probs=134.2
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCC-CccCCcccc-------CCCCCcEEEccCCCCCCCCCc
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTS-LLKVPRPFQ-------YLSGLVYLHLENSNLFSLGSL 182 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~ 182 (524)
++..++|++|++++|.+ . +|..+... |++|+|++|.+ ...+|..+. ++++|++|++++|.+.+....
T Consensus 39 ~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455677777777777 2 56555433 67777777766 334555444 677777777777777643322
Q ss_pred hh-cCCCCCCcEEEccCCCCCCCCCchHhhhcc-----cCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCC
Q 009835 183 QW-LSHLSSLRHLDLSYINLTKSSDWFQVVAKL-----RSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPS 256 (524)
Q Consensus 183 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (524)
.. +..+++|++|++++|.+++.+. .+..+ ++|++|++++|.+.+..+. .+... ++|++|++++|++.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCE--QVRVF-PALSTLDLSDNPELG 187 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSS---HHHHHHTTCCTTCCEEEEESCSCCCCCTT--TCCCC-SSCCEEECCSCTTCH
T ss_pred HHHHhcCCCccEEEccCCCCcchhH---HHHHHHHhhcCCCcEEEeeCCCCccchHH--HhccC-CCCCEEECCCCCcCc
Confidence 22 2677777777777777776643 44444 6677777777776665543 22333 566666666665432
Q ss_pred CC--CCchh-hhccccccEEEeeccccccc--cc-hhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCC
Q 009835 257 SS--VYPWL-FNLSRNIQYLNLGFNSLQGS--IP-EAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 257 ~~--~~~~~-~~~~~~L~~L~Ls~n~l~~~--~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~ 329 (524)
. .++.+ +...++|++|++++|.+++. ++ ..+..+++|++|++++|.+++..| ..+..++
T Consensus 188 -~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~------------- 253 (312)
T 1wwl_A 188 -ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS------------- 253 (312)
T ss_dssp -HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-------------
T ss_pred -chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-------------
Confidence 1 11111 01222455555555554421 11 122334444444444444444332 2223333
Q ss_pred CchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 330 GDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
+|++|++++|+++..+..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 254 -----------------~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 -----------------QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----------------TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -----------------CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55555555555553222233 5666666666666644 43 5666666666666666653
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8e-28 Score=236.02 Aligned_cols=258 Identities=20% Similarity=0.186 Sum_probs=183.1
Q ss_pred ccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcc
Q 009835 135 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKL 214 (524)
Q Consensus 135 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 214 (524)
.++..++|++|++++|.+ .+|..+... |++|++++|.+.....+..+. .....+..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~-------------------~~~~~~~~l 94 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL-------------------FGALRVLGI 94 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH-------------------HHHHHHHTT
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHH-------------------HHHHHhcCc
Confidence 344556677777777776 556554433 566666665553222211111 000011245
Q ss_pred cCCCEEEeeCCCCCCCCCCchhh-hcccCcccEEEccCCCCCCCCCCchhhhc----cccccEEEeeccccccccchhhh
Q 009835 215 RSLKTLVLHSCALPPINPSSIWH-FNLSTSIETLDLSDNNLPSSSVYPWLFNL----SRNIQYLNLGFNSLQGSIPEAFQ 289 (524)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~~~ 289 (524)
++|++|++++|.+.+..|. .+ ...+++|++|++++|.+.+ .+..+... .++|++|++++|++++..+..+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CCccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 6666666666666655554 22 1233778888888887754 25555554 15899999999999988878899
Q ss_pred cccccceEeecCcccccc--cchhh--cCCCCCCEEEccCCCCCCch--h-HHHHhccCCCCCCCccEEEcCCCCCccCC
Q 009835 290 LMVSLRFLYLTSNELEGG--IPKFF--GKMCSLNRLCLPYNKLSGDL--S-EMIQNLSGGCTMNSLEGVCLEGNDITGPL 362 (524)
Q Consensus 290 ~l~~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~Ls~n~l~~~~--~-~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~ 362 (524)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++.. + ..+..++ +|++|++++|++++.+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV------QLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC------CCSEEECTTSCCCSSC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC------CCCEEECCCCcCCccc
Confidence 999999999999998765 34444 88999999999999998432 2 3334444 9999999999999977
Q ss_pred C--CCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCCC
Q 009835 363 P--DLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPEL 429 (524)
Q Consensus 363 ~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~~ 429 (524)
| .+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |....+..+....+.+|+..
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 4 3777899999999999999 7787776 8999999999999976 76667788888889999864
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=226.38 Aligned_cols=238 Identities=20% Similarity=0.187 Sum_probs=175.1
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
+.++++.+.+... ....+..+++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..
T Consensus 13 ~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------- 74 (317)
T 3o53_A 13 KIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----------------- 74 (317)
T ss_dssp EEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----------------
T ss_pred eEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----------------
Confidence 3444444444332 3334445556666666666666555555666666666666665554222
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
.+..+++|++|++++|.+.+..+ . ++|++|++++|.+.+ ++.. ..++|++|++++
T Consensus 75 ------------~~~~l~~L~~L~Ls~n~l~~l~~-------~-~~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~ 129 (317)
T 3o53_A 75 ------------DLESLSTLRTLDLNNNYVQELLV-------G-PSIETLHAANNNISR--VSCS---RGQGKKNIYLAN 129 (317)
T ss_dssp ------------EETTCTTCCEEECCSSEEEEEEE-------C-TTCCEEECCSSCCSE--EEEC---CCSSCEEEECCS
T ss_pred ------------hhhhcCCCCEEECcCCccccccC-------C-CCcCEEECCCCccCC--cCcc---ccCCCCEEECCC
Confidence 13444555555555555443322 2 899999999999954 3332 235899999999
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhc-CCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG-KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGN 356 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n 356 (524)
|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++.... ..+++|++|++++|
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--------VVFAKLKTLDLSSN 201 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--------CCCTTCCEEECCSS
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--------cccccCCEEECCCC
Confidence 999987788899999999999999999987777764 789999999999999865221 12559999999999
Q ss_pred CCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 357 DITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 357 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
++++.++.+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+
T Consensus 202 ~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 202 KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 99988888999999999999999999 578889999999999999999993
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=239.36 Aligned_cols=218 Identities=22% Similarity=0.201 Sum_probs=190.2
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhccc
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLS 241 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 241 (524)
.+++|++|+|++|.+...+. ..+..+++|++|+|++|.+++.. .+..+++|++|++++|.+.+..+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L~Ls~N~l~~l~~~-------- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQELLVG-------- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCG-GGGTTCTTCCEEECTTSCCEEEE----ECTTCTTCCEEECCSSEEEEEEEC--------
T ss_pred cCCCccEEEeeCCcCCCCCH-HHHhCCCCCCEEEeeCCCCCCCc----ccccCCCCCEEEecCCcCCCCCCC--------
Confidence 34589999999999997554 67899999999999999998764 288999999999999998765442
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhc-CCCCCCE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG-KMCSLNR 320 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~ 320 (524)
++|++|++++|.+.+ ++.. ..++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++
T Consensus 99 ~~L~~L~L~~N~l~~--~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISR--VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCC--EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCC--CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 899999999999955 3332 235899999999999998888999999999999999999998888886 7999999
Q ss_pred EEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 321 LCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 321 L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
|+|++|.+++..+. ..+++|+.|+|++|.+++.++.+..+++|+.|+|++|.+++ +|..+..+++|+.|++
T Consensus 174 L~Ls~N~l~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ--------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp EECTTSCCCEEECC--------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred EecCCCcccccccc--------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 99999999876322 23559999999999999988889999999999999999995 7888999999999999
Q ss_pred cCCcCe
Q 009835 401 GRNSFT 406 (524)
Q Consensus 401 ~~N~l~ 406 (524)
++|++.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 999998
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.5e-24 Score=206.58 Aligned_cols=218 Identities=23% Similarity=0.246 Sum_probs=146.8
Q ss_pred CCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEc
Q 009835 68 RDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNL 147 (524)
Q Consensus 68 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L 147 (524)
.++|.|.|+.|... +.++.++++++ .++ .+|..+. ++|++|++++|.++.. .+..|.++++|++|++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSK--------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTS--------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCC--------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence 47899999988532 34567888874 454 3555444 5788888888888875 5567888888888888
Q ss_pred cCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCC
Q 009835 148 SCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCAL 227 (524)
Q Consensus 148 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l 227 (524)
++|.+....+..|.++++|++|++++|.+..++. ..+..+++|++|++++|.++..+ +..+..+++|++|++++|.+
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcC
Confidence 8888876666667778888888888887775543 44566667777777776666554 12344444444444444444
Q ss_pred CCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc
Q 009835 228 PPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307 (524)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (524)
.+. ++..+...++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 146 ~~~-----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 146 QSL-----------------------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CCC-----------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred Ccc-----------------------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 433 333233334666666666666655555666777778888888877766
Q ss_pred cchhhcCCCCCCEEEccCCCCCC
Q 009835 308 IPKFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 308 ~p~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
.+..+..+++|+.|++++|.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHhccccCCCEEEecCCCeeC
Confidence 56667777888888888887654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.5e-23 Score=222.73 Aligned_cols=258 Identities=24% Similarity=0.245 Sum_probs=212.0
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
.++++|++++|.++. +|..+. ++|++|+|++|.+.. +|. .+++|++|+|++|.++.++. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEE
Confidence 469999999999985 777665 899999999999884 554 67999999999999987663 78999999
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.++..+. .+++|+.|++++|.++..... +++|++|++++|.+++ ++. .+++|+.|+
T Consensus 107 ~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~--l~~----~~~~L~~L~ 167 (622)
T 3g06_A 107 SIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLAS--LPA----LPSELCKLW 167 (622)
T ss_dssp EECSCCCCCCCC------CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSC--CCC----CCTTCCEEE
T ss_pred ECcCCcCCCCCC------CCCCcCEEECCCCCCCcCCCC-------CCCCCEEECcCCcCCC--cCC----ccCCCCEEE
Confidence 999999998763 678999999999999875442 2899999999999944 443 235899999
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.... .+++|+.|+++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~----------~~~~L~~L~Ls 229 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVS 229 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC----------CCTTCCEEECC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC----------CCCCCCEEEcc
Confidence 99999995 55 457899999999999995 454 34799999999999985432 12489999999
Q ss_pred CCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCCCCC
Q 009835 355 GNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNPELC 430 (524)
Q Consensus 355 ~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~~~C 430 (524)
+|.+++.+ ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|.. ..+..+..+.+.+|+...
T Consensus 230 ~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 230 GNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 99999754 45689999999999999 4565 6789999999999999 66653 345667777888998643
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.4e-24 Score=203.96 Aligned_cols=215 Identities=23% Similarity=0.196 Sum_probs=147.9
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCc
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTS 243 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 243 (524)
++|++|++++|.+..++. ..+.++++|++|++++|.++..+ ...+..+ ++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l---------------------------~~ 77 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIE--DGAYQSL---------------------------SH 77 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEEC--TTTTTTC---------------------------TT
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCccC--HHHccCC---------------------------cC
Confidence 356666666666654432 34555566666666665555443 1233444 45
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccc-cchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG-IPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 322 (524)
|++|++++|.+.+ +++..+...++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 78 L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 78 LSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCEEECCCCccCc--cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 5555555555522 2222222233666777777666655554577778888888888888753 578888888899999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCcc-EEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLE-GVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
+++|.+++..+..+..+. .++.|. .|++++|.+++..+......+|+.|++++|++++..+..+..+++|+.|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~---~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLH---QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CCSSCCCEECGGGGHHHH---TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred CCCCCCCcCCHHHhhhhh---hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 999988887777777665 112233 8999999999887775556689999999999997777778999999999999
Q ss_pred CCcCeeeCCCCC
Q 009835 402 RNSFTGKIPLGT 413 (524)
Q Consensus 402 ~N~l~~~~p~~~ 413 (524)
+|+++|.+|...
T Consensus 233 ~N~~~c~c~~l~ 244 (276)
T 2z62_A 233 TNPWDCSCPRID 244 (276)
T ss_dssp SSCBCCCTTTTH
T ss_pred CCcccccCCchH
Confidence 999999988643
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.9e-23 Score=199.78 Aligned_cols=211 Identities=23% Similarity=0.236 Sum_probs=110.9
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++|++|++++|.+++. .+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+...+. ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEE
Confidence 4677777777777764 44467777777777777777766666666777777777777776654332 335555555555
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLN 274 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 274 (524)
++++|.+..... ..+..+ ++|++|++++|.+.+..++..+.... +|++|+
T Consensus 106 ~l~~n~l~~~~~--~~~~~l---------------------------~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~ 155 (276)
T 2z62_A 106 VAVETNLASLEN--FPIGHL---------------------------KTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLD 155 (276)
T ss_dssp ECTTSCCCCSTT--CCCTTC---------------------------TTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEE
T ss_pred ECCCCCccccCc--hhcccC---------------------------CCCCEEECcCCccceecCchhhccCC-CCCEEE
Confidence 555555544321 112222 44555555555443212233333332 555555
Q ss_pred eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcC
Q 009835 275 LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 275 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+++|++++..+..+..+++|+.|.+ +|++++|.+++..+..+.. .+|++|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l--------------------~L~ls~n~l~~~~~~~~~~-------~~L~~L~L~ 208 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNL--------------------SLDLSLNPMNFIQPGAFKE-------IRLKELALD 208 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCE--------------------EEECCSSCCCEECTTSSCS-------CCEEEEECC
T ss_pred CCCCCCCcCCHHHhhhhhhccccce--------------------eeecCCCcccccCccccCC-------CcccEEECC
Confidence 5555554443444444444431100 3444444444333222211 145555555
Q ss_pred CCCCccCCCC-CCCCCCCcEEEccCCcCccc
Q 009835 355 GNDITGPLPD-LGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 355 ~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 384 (524)
+|++++.++. +..+++|+.|++++|.+++.
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCceeecCHhHhcccccccEEEccCCccccc
Confidence 5555554444 45666666667766666643
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.4e-23 Score=197.23 Aligned_cols=185 Identities=27% Similarity=0.325 Sum_probs=130.9
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccc
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 295 (524)
++++|++++|.+....+. .+..+ ++|++|++++|.+ ..+++..+...++|++|++++|.+++..+..+..+++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSK--AFHRL-TKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSCCSCCCTT--SSSSC-TTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCEEECcCCCCCeeCHH--HhcCC-CCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 344444444444443331 12222 5555555555555 234444444344677777777777655555667777788
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEE
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKIL 374 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L 374 (524)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+. +..+++|++|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT------SLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc------ccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 888888888777677777888888888888888776666666554 888888888888877766 8889999999
Q ss_pred EccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 375 VLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 375 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
++++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 9999999977777788999999999999999988764
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.4e-24 Score=217.57 Aligned_cols=260 Identities=20% Similarity=0.177 Sum_probs=118.0
Q ss_pred EEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCC----ccccCCC-CCcEEEccCCCCCCCCCchhcCCC-----C
Q 009835 120 LDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP----RPFQYLS-GLVYLHLENSNLFSLGSLQWLSHL-----S 189 (524)
Q Consensus 120 L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l-----~ 189 (524)
+++++|.+++. +|..+...++|++|+|++|.+.+..+ ..+.+++ +|++|+|++|.+..... ..+..+ +
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCC
Confidence 34455555543 44444444445555555555544433 3444454 55555555555543221 222221 5
Q ss_pred CCcEEEccCCCCCCCCC--chHhhhcc-cCCCEEEeeCCCCCCCCCCchh--hhcccCcccEEEccCCCCCCCCCCchh-
Q 009835 190 SLRHLDLSYINLTKSSD--WFQVVAKL-RSLKTLVLHSCALPPINPSSIW--HFNLSTSIETLDLSDNNLPSSSVYPWL- 263 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~--~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~- 263 (524)
+|++|++++|.+++... +...+..+ ++|++|++++|.+.+..+..+. +....++|++|++++|.+.+ .....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-KSSDELI 159 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-SCHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-HHHHHHH
Confidence 55555555555544321 11122333 5555555555555443332000 01111455666666665532 111111
Q ss_pred ---hhccccccEEEeeccccccccchhhhc----c-cccceEeecCcccccc----cchhhcC-CCCCCEEEccCCCCCC
Q 009835 264 ---FNLSRNIQYLNLGFNSLQGSIPEAFQL----M-VSLRFLYLTSNELEGG----IPKFFGK-MCSLNRLCLPYNKLSG 330 (524)
Q Consensus 264 ---~~~~~~L~~L~Ls~n~l~~~~~~~~~~----l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~n~l~~ 330 (524)
....++|++|++++|.+++..+..+.. . ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 112225666666666665544433332 2 3566666666665542 3333433 2356666666666655
Q ss_pred chhHHHHhccCCCCCCCccEEEcCCCCCccCCC--------CCCCCCCCcEEEccCCcCccc
Q 009835 331 DLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP--------DLGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 331 ~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~l~~L~~L~Ls~N~l~~~ 384 (524)
..+..+..+. ..+++|+.|++++|.+.+..+ .+..+++|+.||+++|.+.+.
T Consensus 240 ~~~~~l~~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5544443321 123345555555554322211 234455555555555555444
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.2e-23 Score=200.11 Aligned_cols=131 Identities=25% Similarity=0.295 Sum_probs=86.0
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L 183 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT------QL 183 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc------cC
Confidence 555555555555544444455566666666666666655555556666666666666666665555555443 67
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 412 (524)
++|++++|++++.++. +..+++|+.|++++|.+.+. +++|+.+++..|.++|.+|..
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 7777777777766665 67778888888888877643 446777888888888888854
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=7.3e-24 Score=212.26 Aligned_cols=259 Identities=18% Similarity=0.149 Sum_probs=198.2
Q ss_pred EEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCc---hhcCCCC-CCcEEEccCCCCCCCCCchHhhhcc-----
Q 009835 144 YLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL---QWLSHLS-SLRHLDLSYINLTKSSDWFQVVAKL----- 214 (524)
Q Consensus 144 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l----- 214 (524)
++++++|.+++.+|..+...++|++|+|++|.+...+.. ..+..++ +|++|++++|.+++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--SDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC--HHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH--HHHHHHHHhccC
Confidence 568899999999988888888899999999999865431 4577888 9999999999998874 3455554
Q ss_pred cCCCEEEeeCCCCCCCCCCchh-hhccc-CcccEEEccCCCCCCCCCCchhhhc----cccccEEEeecccccccc----
Q 009835 215 RSLKTLVLHSCALPPINPSSIW-HFNLS-TSIETLDLSDNNLPSSSVYPWLFNL----SRNIQYLNLGFNSLQGSI---- 284 (524)
Q Consensus 215 ~~L~~L~L~~n~l~~~~~~~~~-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~---- 284 (524)
++|++|++++|.+.+..+..+. ..... ++|++|++++|.+++ ..+..+... +++|++|++++|.+++..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 9999999999999876653111 11222 799999999999965 333333332 358999999999998644
Q ss_pred chhhhccc-ccceEeecCcccccccchhh----cCC-CCCCEEEccCCCCCCch----hHHHHhccCCCCCCCccEEEcC
Q 009835 285 PEAFQLMV-SLRFLYLTSNELEGGIPKFF----GKM-CSLNRLCLPYNKLSGDL----SEMIQNLSGGCTMNSLEGVCLE 354 (524)
Q Consensus 285 ~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~~~----~~~~~~l~~~~~~~~L~~L~Ls 354 (524)
+..+...+ +|++|++++|.+++..+..+ ..+ ++|++|+|++|.+++.. +..+.... ++|++|+|+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~-----~~L~~L~Ls 233 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP-----NHVVSLNLC 233 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC-----TTCCEEECC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC-----CCceEEECc
Confidence 34445555 99999999999997776544 455 59999999999998743 44444421 389999999
Q ss_pred CCCCccCCC----C-CCCCCCCcEEEccCCcCcccc-------chhhhcCCCCCEEECcCCcCeeeCC
Q 009835 355 GNDITGPLP----D-LGGFSSLKILVLGENRLNGTI-------DKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 355 ~n~l~~~~~----~-~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|.+++..+ . +..+++|++|++++|.+.+.. +..+..+++|+.||+++|++....+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 999998654 2 578899999999999955443 3356678889999999999886633
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.5e-23 Score=199.80 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=115.8
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 291 (524)
..+++|+.|++++|.+.... .+..+ ++|++|++++|.+.+ .+.+.... +|++|++++|.+++..+..+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~----~l~~l-~~L~~L~l~~n~l~~---~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ----GIQYL-PNVRYLALGGNKLHD---ISALKELT-NLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT----TGGGC-TTCCEEECTTSCCCC---CGGGTTCT-TCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccceeeeeeCCCCccccc----ccccC-CCCcEEECCCCCCCC---chhhcCCC-CCCEEECCCCccCccChhHhcCC
Confidence 34445555555555444321 12222 556666666665533 12333333 66667776666665555556667
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSS 370 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~ 370 (524)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++.++. +..+++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------NLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------cCCEEECCCCCcCccCHHHhcCCcc
Confidence 7777777777777766666667777777777777777766655555544 677777777777766555 566777
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 77777777777766666667777777777777777776664
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.3e-22 Score=194.72 Aligned_cols=204 Identities=22% Similarity=0.161 Sum_probs=151.1
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+.+++++++++++++.++. +|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+..++. ...++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCT
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCC
Confidence 36778889999999999886 565553 689999999999988888889999999999999999886554 37888
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccc
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 269 (524)
+|++|++++|.++..+. .+..+++|++|++++|.+++..+. .+..+ ++|++|++++|++. .+++..+...++
T Consensus 78 ~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~--~~~~l-~~L~~L~L~~N~l~--~~~~~~~~~l~~ 149 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLG--ALRGL-GELQELYLKGNELK--TLPPGLLTPTPK 149 (290)
T ss_dssp TCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSS--TTTTC-TTCCEEECTTSCCC--CCCTTTTTTCTT
T ss_pred cCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHH--HHcCC-CCCCEEECCCCCCC--ccChhhcccccC
Confidence 89999999998886653 567778888888888888776653 23333 77777777777773 445555444447
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCC
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 777777777777555555666777777777777776 55666666667777777777665
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.4e-24 Score=212.41 Aligned_cols=267 Identities=18% Similarity=0.176 Sum_probs=166.0
Q ss_pred CCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCC--CCCCEEEccCCCCCCCCCccccCCCCCCCEEE
Q 009835 69 DCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKL--HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLN 146 (524)
Q Consensus 69 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~ 146 (524)
-|..|.++.|+ ...++.++++++ .+. +..+..+ +++++|++++|.+.+. .+. +..+++|++|+
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~--------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~ 99 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGK--------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMD 99 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTC--------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEE
T ss_pred HHHHHHHHhcC--chhheeeccccc--------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEE
Confidence 45569998875 345778999885 444 4556666 8999999999999885 444 56799999999
Q ss_pred ccCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCC-CCCCCCCchHhhhcccCCCEEEeeC
Q 009835 147 LSCGTSLLK-VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYI-NLTKSSDWFQVVAKLRSLKTLVLHS 224 (524)
Q Consensus 147 L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~ 224 (524)
+++|.+.+. +|..+..+++|++|++++|.+... .+..+..+++|++|++++| .+++.. ++..+..+++|++|++++
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCC
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCC
Confidence 999988765 777888999999999999987632 2355777888888888888 455321 234567777788888877
Q ss_pred C-CCCCCCCCchhhhcccC-cccEEEccCC--CCCCCCCCchhhhccccccEEEeeccc-cccccchhhhcccccceEee
Q 009835 225 C-ALPPINPSSIWHFNLST-SIETLDLSDN--NLPSSSVYPWLFNLSRNIQYLNLGFNS-LQGSIPEAFQLMVSLRFLYL 299 (524)
Q Consensus 225 n-~l~~~~~~~~~~~~~~~-~L~~L~L~~n--~l~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 299 (524)
| .+++.... ..+..+ + +|++|++++| .+++..++..+.. .++|++|++++|. +++..+..+..+++|++|++
T Consensus 178 ~~~l~~~~~~-~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 178 CFDFTEKHVQ-VAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CTTCCHHHHH-HHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCcChHHHH-HHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 7 66542110 022233 5 6777777766 3332122222222 3366666666666 55455555666666666666
Q ss_pred cCcc-cccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC
Q 009835 300 TSNE-LEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 300 s~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
++|. +.......+.++++|++|++++| ++......+.. +++.|++++|.+++..|.
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--------~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--------ALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--------HSTTSEESCCCSCCTTCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--------hCcceEEecccCccccCC
Confidence 6663 22222224555666666666666 43322222221 244444555555554443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.9e-22 Score=195.38 Aligned_cols=206 Identities=23% Similarity=0.196 Sum_probs=177.1
Q ss_pred cCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhh
Q 009835 185 LSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLF 264 (524)
Q Consensus 185 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 264 (524)
+.+++++++++++++.++..+. .+ .++++.|++++|.+.+..+. .+..+ ++|++|++++|.+++ ++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~---~~--~~~l~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~n~l~~--~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP---DL--PKDTTILHLSENLLYTFSLA--TLMPY-TRLTQLNLDRAELTK--LQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS---CC--CTTCCEEECTTSCCSEEEGG--GGTTC-TTCCEEECTTSCCCE--EECC--
T ss_pred ccccCCccEEECCCCCCCcCCC---CC--CCCCCEEEcCCCcCCccCHH--HhhcC-CCCCEEECCCCccCc--ccCC--
Confidence 6788999999999999998863 22 26899999999999887663 34444 999999999999944 3332
Q ss_pred hccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCC
Q 009835 265 NLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCT 344 (524)
Q Consensus 265 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 344 (524)
...++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..++
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---- 148 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP---- 148 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc----
Confidence 34459999999999998 6788888999999999999999988788899999999999999999988877777655
Q ss_pred CCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 345 MNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 345 ~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|+.|+|++|++++.++. +..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++.+.+.
T Consensus 149 --~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 149 --KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp --TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred --CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999999999999987776 788999999999999999 778888888999999999999998764
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.2e-24 Score=213.51 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCCcEEEccCCcCcc----ccchhh-hcCCCCCEEECcCCcCeeeC
Q 009835 368 FSSLKILVLGENRLNG----TIDKSL-SQLLKLESLSLGRNSFTGKI 409 (524)
Q Consensus 368 l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~ 409 (524)
+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666666666666665 355555 45677777777777766544
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.2e-23 Score=224.84 Aligned_cols=307 Identities=13% Similarity=0.070 Sum_probs=197.2
Q ss_pred CcEEEEEcCCCCCCCCCCCcceee----cCccccCCCCCCEEEccCCCCCCC---CCccccCCCCCCCEEEccCCCCCcc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGT----ISPALLKLHDLRHLDLSNNHFGGS---PLPEFIGSLSRLRYLNLSCGTSLLK 155 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~L~~n~~~~~ 155 (524)
.+++.|+|+++ .+++. ++..+..+++|++|++++|.+++. .++..+.++++|++|++++|.+.+
T Consensus 164 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 164 RKIKTLLMEES--------SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp TTCSEEECTTC--------EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred CCCCEEECccc--------cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 46888888885 44443 334455678888888888877632 144455677888888888777654
Q ss_pred CCccccCCCCCcEEEccCCCCC-------------------------CCCCchhcCCCCCCcEEEccCCCCCCCCCchHh
Q 009835 156 VPRPFQYLSGLVYLHLENSNLF-------------------------SLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQV 210 (524)
Q Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 210 (524)
+|..+.++++|++|+++..... ....+..+..+++|++|++++|.++... ....
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~-~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-HCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH-HHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH-HHHH
Confidence 4455666666666666532211 0111233445666677777666643321 1233
Q ss_pred hhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccC-----------CCCCCCCCCchhhhccccccEEEeeccc
Q 009835 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD-----------NNLPSSSVYPWLFNLSRNIQYLNLGFNS 279 (524)
Q Consensus 211 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 279 (524)
+..+++|++|++++ .+..... ..+...+++|++|++++ +.+++ .....+....++|++|+++.|.
T Consensus 314 ~~~~~~L~~L~L~~-~~~~~~l--~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 314 IQKCPNLEVLETRN-VIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HTTCTTCCEEEEEG-GGHHHHH--HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC
T ss_pred HHhCcCCCEEeccC-ccCHHHH--HHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC
Confidence 56667777777762 2221111 02223347888888883 44433 2223334445688899888888
Q ss_pred cccccchhhhc-ccccceEeec----Ccccccc-----cchhhcCCCCCCEEEccCCC--CCCchhHHHHhccCCCCCCC
Q 009835 280 LQGSIPEAFQL-MVSLRFLYLT----SNELEGG-----IPKFFGKMCSLNRLCLPYNK--LSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 280 l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~~~~~~~ 347 (524)
+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++.....+.. .+++
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~-----~~~~ 464 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ-----YSPN 464 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH-----SCTT
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH-----hCcc
Confidence 88776666665 8889999886 5666653 34446678899999997543 66666666654 1348
Q ss_pred ccEEEcCCCCCccCC-CC-CCCCCCCcEEEccCCcCccc-cchhhhcCCCCCEEECcCCcCeee
Q 009835 348 LEGVCLEGNDITGPL-PD-LGGFSSLKILVLGENRLNGT-IDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
|++|++++|.+++.. +. +.++++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999999999987632 33 57789999999999998755 344556789999999999997743
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.4e-23 Score=209.33 Aligned_cols=263 Identities=19% Similarity=0.186 Sum_probs=146.7
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCC---CCccCCccc-------cCCCCCcEEEcc
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGT---SLLKVPRPF-------QYLSGLVYLHLE 172 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~---~~~~~p~~~-------~~l~~L~~L~L~ 172 (524)
.++..+..+++|++|+|++|.++... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 35556666777777777777766531 12335567777777777643 333444433 455556666665
Q ss_pred CCCCCCCC---CchhcCCCCCCcEEEccCCCCCCCC--CchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEE
Q 009835 173 NSNLFSLG---SLQWLSHLSSLRHLDLSYINLTKSS--DWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETL 247 (524)
Q Consensus 173 ~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 247 (524)
+|.+.... .+..+..+++|++|+|++|.++... .+...+..+. .+ ......++|++|
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~----------~~~~~~~~L~~L 164 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VN----------KKAKNAPPLRSI 164 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HH----------HHHHTCCCCCEE
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hh----------hhcccCCCCcEE
Confidence 55555321 1123344445555555554443221 0011111120 00 000000466666
Q ss_pred EccCCCCCCCCCCc--hhhhccccccEEEeecccccc-----ccchhhhcccccceEeecCcccc----cccchhhcCCC
Q 009835 248 DLSDNNLPSSSVYP--WLFNLSRNIQYLNLGFNSLQG-----SIPEAFQLMVSLRFLYLTSNELE----GGIPKFFGKMC 316 (524)
Q Consensus 248 ~L~~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~ 316 (524)
++++|.+....++. ..+...++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 66666664212221 112223377777777777762 23336667788888888888875 45677777888
Q ss_pred CCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCcc----CCCC-C-CCCCCCcEEEccCCcCccccc
Q 009835 317 SLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITG----PLPD-L-GGFSSLKILVLGENRLNGTID 386 (524)
Q Consensus 317 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~----~~~~-~-~~l~~L~~L~Ls~N~l~~~~p 386 (524)
+|++|+|++|.+++.....+...-....+++|+.|+|++|.+++ .++. + .++++|+.|++++|.+++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88888888888876633322221000113478888888888887 2443 4 567899999999999987764
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6e-22 Score=187.77 Aligned_cols=211 Identities=23% Similarity=0.269 Sum_probs=156.2
Q ss_pred CCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccc
Q 009835 216 SLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295 (524)
Q Consensus 216 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 295 (524)
..++++++++.+...+.. + .+.+++|++++|.+.+ +++..+...++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~---~---~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG---I---PADTEKLDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSC---C---CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCC---C---CCCCCEEEccCCCcCc--cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 455666666666554432 1 2678888888888844 3333333344899999999988887777788899999
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEE
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKIL 374 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L 374 (524)
+|++++|.+++..+..|..+++|++|++++|.+++..+..|..++ +|++|+|++|++++.++. +..+++|++|
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------cccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 999999999977778888999999999999999987777776655 899999999999988875 8899999999
Q ss_pred EccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccc-c-----ccccccCCCCCCCCCCCCCCCCC
Q 009835 375 VLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQS-F-----NASVYAGNPELCGLPLPNKCPDE 441 (524)
Q Consensus 375 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~-----~~~~~~gn~~~C~~~~~~~c~~~ 441 (524)
+|++|++++..+..+..+++|+.|++++|++.+.......+.. + ......|+. .|+.+....|..+
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 9999999988888899999999999999999987443221111 1 111223433 5666666777654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.6e-23 Score=206.03 Aligned_cols=252 Identities=19% Similarity=0.182 Sum_probs=144.2
Q ss_pred CCEEEccCCCCCCCCCccccCCC--CCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEE
Q 009835 117 LRHLDLSNNHFGGSPLPEFIGSL--SRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHL 194 (524)
Q Consensus 117 L~~L~Ls~n~l~~~~~p~~l~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 194 (524)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.....+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 667777776654 3444555 6677777777766655544 44566666666666665422222345555666666
Q ss_pred EccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCC-CCCCCCCCchhhhccccccEE
Q 009835 195 DLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDN-NLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 195 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L 273 (524)
++++|.+++.. +..+..+ ++|++|++++| .+++ ...+......++|++|
T Consensus 124 ~L~~~~l~~~~--~~~l~~~---------------------------~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 124 SLEGLRLSDPI--VNTLAKN---------------------------SNLVRLNLSGCSGFSE-FALQTLLSSCSRLDEL 173 (336)
T ss_dssp ECTTCBCCHHH--HHHHTTC---------------------------TTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEE
T ss_pred eCcCcccCHHH--HHHHhcC---------------------------CCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEE
Confidence 66655544321 2334444 45555555555 3322 1112222223366666
Q ss_pred Eeecc-ccccc-cchhhhccc-ccceEeecCc--ccc-cccchhhcCCCCCCEEEccCCC-CCCchhHHHHhccCCCCCC
Q 009835 274 NLGFN-SLQGS-IPEAFQLMV-SLRFLYLTSN--ELE-GGIPKFFGKMCSLNRLCLPYNK-LSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 274 ~Ls~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~~ 346 (524)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~------ 247 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN------ 247 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT------
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC------
Confidence 66666 66543 455566666 7777777776 333 3455556667777777777776 5555555555544
Q ss_pred CccEEEcCCCC-CccCC-CCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC
Q 009835 347 SLEGVCLEGND-ITGPL-PDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG 412 (524)
Q Consensus 347 ~L~~L~Ls~n~-l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 412 (524)
+|++|++++|. +.... ..+.++++|+.|++++| ++...-..+. .+++.|++++|++++..|..
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 77777777774 22211 12667888888888888 4433222232 23566678899999888754
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1e-21 Score=184.69 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=141.7
Q ss_pred CCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC-CCccCCccccCCCCCcEEEccC-CCCCCCCCchhcCCCCCCcE
Q 009835 116 DLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYLSGLVYLHLEN-SNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 116 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~ 193 (524)
+|++|++++|.+++. .+..|..+++|++|++++|. +.+..+..|.++++|++|++++ |.++.++. ..|.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCE
Confidence 899999999999885 55688999999999999997 7777777899999999999998 88886553 56788899999
Q ss_pred EEccCCCCCCCCCchHhhhcccCCC---EEEeeCC-CCCCCCCCchhhhcccCccc-EEEccCCCCCCCCCCchhhhccc
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLK---TLVLHSC-ALPPINPSSIWHFNLSTSIE-TLDLSDNNLPSSSVYPWLFNLSR 268 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~ 268 (524)
|++++|.+++.+. +..+++|+ +|++++| .+.+..+. .+..+ ++|+ +|++++|++ ..++...+.. +
T Consensus 110 L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l-~~L~~~L~l~~n~l--~~i~~~~~~~-~ 179 (239)
T 2xwt_C 110 LGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN--AFQGL-CNETLTLKLYNNGF--TSVQGYAFNG-T 179 (239)
T ss_dssp EEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT--TTTTT-BSSEEEEECCSCCC--CEECTTTTTT-C
T ss_pred EeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcc--cccch-hcceeEEEcCCCCC--cccCHhhcCC-C
Confidence 9999998887653 55666666 8888888 77665552 22333 7777 777777777 3455555555 3
Q ss_pred cccEEEeeccc-cccccchhhhcc-cccceEeecCcccccccchhhcCCCCCCEEEccCC
Q 009835 269 NIQYLNLGFNS-LQGSIPEAFQLM-VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 269 ~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
+|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 67777777773 665445556666 677777777777663 3322 4556666666654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.7e-21 Score=190.37 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=98.4
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+...+ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---hhcCCCC
Confidence 3346667777777776665 33 45666777777777666665433 666666777777766666432 3566666
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 270 (524)
|++|++++|.+++.+ .+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+.+ +++ +... ++|
T Consensus 109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~----l~~l-~~L~~L~l~~n~l~~--~~~-l~~l-~~L 175 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP----LAGL-TNLQYLSIGNAQVSD--LTP-LANL-SKL 175 (308)
T ss_dssp CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG----GGGC-TTCCEEECCSSCCCC--CGG-GTTC-TTC
T ss_pred CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc----ccCC-CCccEEEccCCcCCC--Chh-hcCC-CCC
Confidence 666666666665542 25555555555555555544322 1222 455555555554422 121 2222 244
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCC
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKL 328 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 328 (524)
+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 444444444443221 3344444444444444442221 33444444444444433
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=197.80 Aligned_cols=231 Identities=20% Similarity=0.151 Sum_probs=176.4
Q ss_pred CCCCCCEEEccCCCCCCCCCccc--cCCCCCCCEEEccCCCCCccCCccc--cCCCCCcEEEccCCCCCCCCC---chhc
Q 009835 113 KLHDLRHLDLSNNHFGGSPLPEF--IGSLSRLRYLNLSCGTSLLKVPRPF--QYLSGLVYLHLENSNLFSLGS---LQWL 185 (524)
Q Consensus 113 ~l~~L~~L~Ls~n~l~~~~~p~~--l~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~ 185 (524)
+...++.|++.++.++...+... +..+++|++|++++|.+.+..|..+ .++++|++|++++|.+..... ...+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34568889998887754312211 1235679999999999999999888 899999999999999885322 1234
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCC---CCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPI---NPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
..+++|++|++++|.+...+ +..+..+++|++|++++|.+.+. .+. .....+ ++|++|++++|+++ .++..
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l-~~L~~L~Ls~N~l~--~l~~~ 215 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFS--CEQVRAFPALTSLDLSDNPGLGERGLMAA-LCPHKF-PAIQNLALRNTGME--TPTGV 215 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCC--TTSCCCCTTCCEEECCSCTTCHHHHHHTT-SCTTSS-CCCCSCBCCSSCCC--CHHHH
T ss_pred hhccCCCEEEeeCCCcchhh--HHHhccCCCCCEEECCCCCCccchhhhHH-HhhhcC-CCCCEEECCCCCCC--chHHH
Confidence 57899999999999998775 36788999999999999987642 111 112234 89999999999994 33332
Q ss_pred ---hhhccccccEEEeeccccccccchhhhcc---cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHH
Q 009835 263 ---LFNLSRNIQYLNLGFNSLQGSIPEAFQLM---VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMI 336 (524)
Q Consensus 263 ---~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 336 (524)
++...++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++... +
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~ 290 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--P 290 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--T
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--h
Confidence 33444599999999999998878777666 69999999999999 6677664 799999999999987521 3
Q ss_pred HhccCCCCCCCccEEEcCCCCCcc
Q 009835 337 QNLSGGCTMNSLEGVCLEGNDITG 360 (524)
Q Consensus 337 ~~l~~~~~~~~L~~L~Ls~n~l~~ 360 (524)
.. +++|+.|++++|+++.
T Consensus 291 ~~------l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DE------LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TS------CCCCSCEECSSTTTSC
T ss_pred hh------CCCccEEECcCCCCCC
Confidence 33 4599999999999875
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.8e-21 Score=181.53 Aligned_cols=192 Identities=27% Similarity=0.302 Sum_probs=143.2
Q ss_pred CCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEcc
Q 009835 69 DCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLS 148 (524)
Q Consensus 69 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~ 148 (524)
+||.|.|++|.. ..+.++++++ .++ .+|..+. +++++|+|++|.+++. .+..+.++++|++|+|+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~--------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGK--------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLD 67 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTC--------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred cCCCCCceEcCC---CCeEEecCCC--------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECC
Confidence 588999999953 3446888885 444 4565554 5899999999999986 77789999999999999
Q ss_pred CCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCC
Q 009835 149 CGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+|.+.+..+..|.++++|++|++++|.+..++. ..+..+++|++|++++|.++..+. ..+..+++|++|++++|.+.
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCC
Confidence 999999888889999999999999999986654 567888899999999998887752 45677788888888888777
Q ss_pred CCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccc
Q 009835 229 PINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGS 283 (524)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 283 (524)
+..+. .+... ++|++|++++|.+. .+++..+...++|+.|++++|.+++.
T Consensus 145 ~~~~~--~~~~l-~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAG--AFDKL-TNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTT--TTTTC-TTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHH--HcCcC-cCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66653 22333 67777777777773 33433333334677777777766543
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.6e-21 Score=189.12 Aligned_cols=194 Identities=23% Similarity=0.285 Sum_probs=105.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhc
Q 009835 160 FQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFN 239 (524)
Q Consensus 160 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 239 (524)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+++.+ .+..+++|++|++++|.+.+.. .+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLA----PLKNLTKITELELSGNPLKNVS----AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCCCSCCG----GGTT
T ss_pred HHHcCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCCh----hHccCCCCCEEEccCCcCCCch----hhcC
Confidence 345677777777777776554 2666777777777777776653 1666667777777776665531 2223
Q ss_pred ccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCC
Q 009835 240 LSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLN 319 (524)
Q Consensus 240 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 319 (524)
+ ++|++|++++|.+.+ ++ .+... ++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 106 l-~~L~~L~l~~n~l~~--~~-~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 106 L-QSIKTLDLTSTQITD--VT-PLAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp C-TTCCEEECTTSCCCC--CG-GGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred C-CCCCEEECCCCCCCC--ch-hhcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 3 566666666666532 22 22222 255555555555553322 4455555555555555543222 44455555
Q ss_pred EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEE
Q 009835 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLS 399 (524)
Q Consensus 320 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 399 (524)
+|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 177 ~L~l~~n~l~~~~~-------------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 223 (308)
T 1h6u_A 177 TLKADDNKISDISP-------------------------------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223 (308)
T ss_dssp EEECCSSCCCCCGG-------------------------------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred EEECCCCccCcChh-------------------------------hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence 55555555443332 4445555555555555553332 45555555555
Q ss_pred CcCCcCe
Q 009835 400 LGRNSFT 406 (524)
Q Consensus 400 l~~N~l~ 406 (524)
+++|+++
T Consensus 224 l~~N~i~ 230 (308)
T 1h6u_A 224 LTNQTIT 230 (308)
T ss_dssp EEEEEEE
T ss_pred ccCCeee
Confidence 5555554
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.2e-23 Score=221.56 Aligned_cols=325 Identities=12% Similarity=0.107 Sum_probs=198.9
Q ss_pred cEEEEEcCCCCCCCCCCCccee-ecCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCCCC----cc
Q 009835 84 HVKVLNLRRSDDENSRGTVLKG-TISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGTSL----LK 155 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~~~----~~ 155 (524)
++++|+|+++. .+.. .++.....+++|++|+|++|.+++.. ++..+..+++|++|++++|.+. +.
T Consensus 139 ~L~~L~L~~~~-------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 139 DLETLKLDKCS-------GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp GCCEEEEESCE-------EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred cCcEEECcCCC-------CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 49999998861 1221 23333458999999999999987653 3345667899999999999987 34
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCC-CCC-----------------------CchHhh
Q 009835 156 VPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT-KSS-----------------------DWFQVV 211 (524)
Q Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-----------------------~~~~~l 211 (524)
++..+.++++|++|++++|.+..++ ..+..+++|++|+++..... ... .++..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGGGH--HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHHHH--HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence 4555678999999999999887533 56777888888888743211 101 112334
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec-----------ccc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF-----------NSL 280 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-----------n~l 280 (524)
..+++|++|++++|.+.+.... .....+++|++|+++ +.+.. ...+.+....++|++|++++ |.+
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~--~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHC--TLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHH--HHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred hhcCCCcEEecCCCcCCHHHHH--HHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 4455555555555553322110 112222555555555 22222 12222333334666676662 444
Q ss_pred ccc-cchhhhcccccceEeecCcccccccchhhcC-CCCCCEEEcc----CCCCCCc-----hhHHHHhccCCCCCCCcc
Q 009835 281 QGS-IPEAFQLMVSLRFLYLTSNELEGGIPKFFGK-MCSLNRLCLP----YNKLSGD-----LSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 281 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~~~~~~~L~ 349 (524)
++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+..++ +|+
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~------~L~ 439 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK------KLR 439 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT------TCC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC------CCC
Confidence 433 2222344667777777666666655555554 6777777775 5566653 333344443 788
Q ss_pred EEEcCCCC--CccCCCC--CCCCCCCcEEEccCCcCccc-cchhhhcCCCCCEEECcCCcCeeeC-CCC-Cccccccccc
Q 009835 350 GVCLEGND--ITGPLPD--LGGFSSLKILVLGENRLNGT-IDKSLSQLLKLESLSLGRNSFTGKI-PLG-TQLQSFNASV 422 (524)
Q Consensus 350 ~L~Ls~n~--l~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~-p~~-~~~~~~~~~~ 422 (524)
+|++++|. +++.... ...+++|++|++++|.+++. ++..+.++++|++|++++|++++.. +.. ..+..+....
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 88886543 4443322 23478899999999998863 4556678899999999999986432 211 2345666667
Q ss_pred ccCCC
Q 009835 423 YAGNP 427 (524)
Q Consensus 423 ~~gn~ 427 (524)
+.+|.
T Consensus 520 ls~n~ 524 (592)
T 3ogk_B 520 VQGYR 524 (592)
T ss_dssp EESCB
T ss_pred CcCCc
Confidence 77777
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=195.55 Aligned_cols=232 Identities=20% Similarity=0.224 Sum_probs=176.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeec-C--ccccCCCCCCEEEccCCCCCCCCCcccc--CCCCCCCEEEccCCCCCccCC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTI-S--PALLKLHDLRHLDLSNNHFGGSPLPEFI--GSLSRLRYLNLSCGTSLLKVP 157 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p 157 (524)
.+++.+++.+. .+.... . ..+..+++|++|++++|.+.+. .|..+ ..+++|++|+|++|.+.+..+
T Consensus 64 ~~l~~l~l~~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAA--------QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp CCCCEEEECSC--------CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTS
T ss_pred cceeEEEEeCC--------cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhh
Confidence 35677888775 232211 1 1123456799999999999987 77777 899999999999999987665
Q ss_pred ----ccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc--hHhhhcccCCCEEEeeCCCCCCCC
Q 009835 158 ----RPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW--FQVVAKLRSLKTLVLHSCALPPIN 231 (524)
Q Consensus 158 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~ 231 (524)
..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.+.... ...+..+++|++|++++|.++...
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hhHHHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 345679999999999999986554 6688999999999999987653111 123468899999999999986443
Q ss_pred CCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc--ccccEEEeeccccccccchhhhcccccceEeecCcccccccc
Q 009835 232 PSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS--RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP 309 (524)
Q Consensus 232 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 309 (524)
.....++..+++|++|++++|.+.+ ..|+.+.... ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 3211233444999999999999966 4465555542 59999999999999 6677664 7999999999999964 4
Q ss_pred hhhcCCCCCCEEEccCCCCCC
Q 009835 310 KFFGKMCSLNRLCLPYNKLSG 330 (524)
Q Consensus 310 ~~l~~l~~L~~L~Ls~n~l~~ 330 (524)
. +..+++|+.|++++|++++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 6788999999999999875
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=4.4e-21 Score=191.05 Aligned_cols=230 Identities=17% Similarity=0.093 Sum_probs=117.0
Q ss_pred ecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCC-ccccCCCCCcE-EEccCCCCCCCCCch
Q 009835 106 TISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVP-RPFQYLSGLVY-LHLENSNLFSLGSLQ 183 (524)
Q Consensus 106 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~~~ 183 (524)
.+|..+ .+++++|+|++|+|+.. .+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.++.|++..++. .
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~ 98 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-E 98 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-T
T ss_pred ccCcCc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-h
Confidence 455544 24677777777777653 33456777777777777777655444 34666666554 4445566664433 4
Q ss_pred hcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCC-CCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 184 WLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC-ALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 184 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
.|..+++|++|++++|.+...+. ..+....++..|++.++ .+....+. .+.
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~--~f~------------------------ 150 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERN--SFV------------------------ 150 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTT--SST------------------------
T ss_pred hhhhccccccccccccccccCCc--hhhcccchhhhhhhcccccccccccc--chh------------------------
Confidence 45666666666666666655542 22333344445555432 22222221 111
Q ss_pred hhhccccccEEEeeccccccccchhhhcccccceEeecC-cccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC
Q 009835 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTS-NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341 (524)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 341 (524)
.....++.|++++|+++. ++.......+|+.|++++ |.++...+..|..+++|++|++++|+++...+..+
T Consensus 151 --~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~----- 222 (350)
T 4ay9_X 151 --GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL----- 222 (350)
T ss_dssp --TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-----
T ss_pred --hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh-----
Confidence 122235555555555552 222222334555555543 33332223345555555555555555554333222
Q ss_pred CCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCC
Q 009835 342 GCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGEN 379 (524)
Q Consensus 342 ~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N 379 (524)
.+|+.|.+.++.-....|.+..+++|+.+++.++
T Consensus 223 ----~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ----ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp ----TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ----ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 1445555444433334555666666776666543
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.6e-21 Score=179.68 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=166.0
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCC-CCCCCCccccCCCCCCCEEEccC-CCCCccCCccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNH-FGGSPLPEFIGSLSRLRYLNLSC-GTSLLKVPRPF 160 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~~ 160 (524)
..++.|+++++ .+++..+..+..+++|++|++++|. ++.. .+..|.++++|++|++++ |.+.+..+..|
T Consensus 31 ~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 47899999985 7887777789999999999999997 8875 556899999999999998 99998888899
Q ss_pred cCCCCCcEEEccCCCCCCCCCchhcCCCCCCc---EEEccCC-CCCCCCCchHhhhcccCCC-EEEeeCCCCCCCCCCch
Q 009835 161 QYLSGLVYLHLENSNLFSLGSLQWLSHLSSLR---HLDLSYI-NLTKSSDWFQVVAKLRSLK-TLVLHSCALPPINPSSI 235 (524)
Q Consensus 161 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~ 235 (524)
.++++|++|++++|.+..++. +..+++|+ +|++++| .++..+ ...+..+++|+ +|++++|.+....+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~~i~~--- 173 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFTSVQG--- 173 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCCEECT---
T ss_pred CCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCcccCH---
Confidence 999999999999999997664 77788887 9999999 888775 35688999999 99999999985544
Q ss_pred hhhcccCcccEEEccCCC-CCCCCCCchhhhcc-ccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 236 WHFNLSTSIETLDLSDNN-LPSSSVYPWLFNLS-RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 236 ~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
..+.. ++|++|++++|+ + ..+++..+... ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred hhcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 45555 799999999995 8 35666555555 699999999999985 4443 67889999998763
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=2.9e-23 Score=221.96 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCcccc-CCCCCCEEEccCC-CCCCCCCccccCCCCCCCEEEccCCCCCccCCccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALL-KLHDLRHLDLSNN-HFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPF 160 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~ 160 (524)
.+++.|+|+++ .+++..+..+. .+++|++|+|++| .++...++..+.++++|++|+|++|.+++..+..+
T Consensus 105 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 105 TWLEEIRLKRM--------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp TTCCEEEEESC--------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCeEEeeCc--------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 46777777774 44444444444 4666777777666 34332233444456667777776666544333322
Q ss_pred ----cCCCCCcEEEccCCCCCCCCC---chhcCCCCCCcEEEccCC
Q 009835 161 ----QYLSGLVYLHLENSNLFSLGS---LQWLSHLSSLRHLDLSYI 199 (524)
Q Consensus 161 ----~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n 199 (524)
..+++|++|++++|. ..+.. ...+..+++|++|++++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 245566666666664 11111 011233566666666655
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.2e-20 Score=197.94 Aligned_cols=205 Identities=20% Similarity=0.222 Sum_probs=138.3
Q ss_pred CCCCC-----cccce-EeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 009835 67 KRDCC-----KWRGV-RCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLS 140 (524)
Q Consensus 67 ~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~ 140 (524)
+.++| .|.++ .|.. .+++.|+|+++ .+++ +|..+. ++|++|+|++|.++. +| ..++
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n--------~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip---~~l~ 100 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLI--NQFSELQLNRL--------NLSS-LPDNLP--PQITVLEITQNALIS--LP---ELPA 100 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS--------CCSC-CCSCCC--TTCSEEECCSSCCSC--CC---CCCT
T ss_pred cCCccccccchhhhcccccc--CCccEEEeCCC--------CCCc-cCHhHc--CCCCEEECcCCCCcc--cc---cccC
Confidence 45566 69998 6742 47889999885 6665 776663 789999999999985 66 4578
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEE
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 220 (524)
+|++|+|++|.+++ +|. +.+ +|++|++++|.++.++. .+++|++|++++|.+++.+. .+++|++|
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L 165 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE------LPTSLEVL 165 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------CCTTCCEE
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC------cCCCcCEE
Confidence 89999999888887 565 555 88888888888876543 56777777777777766542 34455555
Q ss_pred EeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhc-----ccccc
Q 009835 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL-----MVSLR 295 (524)
Q Consensus 221 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~ 295 (524)
++++|.+++ ++. +. ++|+.|++++|.++ .+|. +.. .+.|+
T Consensus 166 ~Ls~N~L~~-----------------------------lp~-l~---~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~ 210 (571)
T 3cvr_A 166 SVRNNQLTF-----------------------------LPE-LP---ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEI 210 (571)
T ss_dssp ECCSSCCSC-----------------------------CCC-CC---TTCCEEECCSSCCS-SCCC-CC--------CCE
T ss_pred ECCCCCCCC-----------------------------cch-hh---CCCCEEECcCCCCC-chhh-HHHhhhcccccce
Confidence 555555544 222 11 24555555555554 3333 322 12237
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhcc
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLS 340 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 340 (524)
.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+..+.
T Consensus 211 ~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred EEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8888888877 5676677788888888888888888887777654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.8e-20 Score=168.86 Aligned_cols=163 Identities=26% Similarity=0.270 Sum_probs=118.0
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
.++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+..++. ..+..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCE
Confidence 35899999999999875 56678899999999999999987777778899999999999999886554 45778888888
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEE
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 273 (524)
|++++|.++..+. ..+..+++|++|++++|.+.+..+. .+... ++|++|++++|.+.+ .. ++|+.|
T Consensus 105 L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~~~~-~~--------~~l~~L 170 (208)
T 2o6s_A 105 LALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDG--VFDRL-TSLQYIWLHDNPWDC-TC--------PGIRYL 170 (208)
T ss_dssp EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSCCBCC-CT--------TTTHHH
T ss_pred EEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHH--HhccC-CCccEEEecCCCeec-CC--------CCHHHH
Confidence 8888888887652 4567777777777777777665552 22223 666677776666533 11 255666
Q ss_pred Eeeccccccccchhhhccc
Q 009835 274 NLGFNSLQGSIPEAFQLMV 292 (524)
Q Consensus 274 ~Ls~n~l~~~~~~~~~~l~ 292 (524)
+++.|+++|.+|..++.++
T Consensus 171 ~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHhCCceeeccCcccc
Confidence 6666666666665555443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.4e-20 Score=183.84 Aligned_cols=235 Identities=22% Similarity=0.232 Sum_probs=175.1
Q ss_pred CcccceEeCCC---------CCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCC
Q 009835 71 CKWRGVRCSNK---------TGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSR 141 (524)
Q Consensus 71 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~ 141 (524)
|.+..|.|++. ...++.|+|+++ .++...+.+|.++++|++|+|++|.+.+...+..|.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESC--------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCC--------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 67888999632 246889999985 7776555689999999999999999876513457899999
Q ss_pred CCE-EEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccC-CCCCCCCCchHhhhcc-cCCC
Q 009835 142 LRY-LNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSY-INLTKSSDWFQVVAKL-RSLK 218 (524)
Q Consensus 142 L~~-L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l-~~L~ 218 (524)
|++ +.+++|++....|..|.++++|++|++++|.+...+. ..+....++..|++.+ +.+...+. ..+..+ ..++
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~l~ 157 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESV 157 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSSCE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccccccccc--cchhhcchhhh
Confidence 886 5667799998889999999999999999999987665 3455667788899866 45665542 345555 4688
Q ss_pred EEEeeCCCCCCCCCCchhhhcccCcccEEEccC-CCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceE
Q 009835 219 TLVLHSCALPPINPSSIWHFNLSTSIETLDLSD-NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297 (524)
Q Consensus 219 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 297 (524)
.|++++|.++...+ ..+.. .+|++|++.+ |.+ ..+++..+...++|++|++++|+++...+..+ .+|+.|
T Consensus 158 ~L~L~~N~i~~i~~---~~f~~-~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L 228 (350)
T 4ay9_X 158 ILWLNKNGIQEIHN---SAFNG-TQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKL 228 (350)
T ss_dssp EEECCSSCCCEECT---TSSTT-EEEEEEECTTCTTC--CCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEE
T ss_pred hhccccccccCCCh---hhccc-cchhHHhhccCCcc--cCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHh
Confidence 99999999987665 44555 7889999975 555 37777776666699999999999985444344 445555
Q ss_pred eecCcccccccchhhcCCCCCCEEEccCC
Q 009835 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 298 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
.+.++.--..+| .+..+++|+.++++++
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 544443333566 4778888999888765
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=6.8e-22 Score=211.28 Aligned_cols=304 Identities=17% Similarity=0.145 Sum_probs=175.3
Q ss_pred CcEEEEEcCCCCCCCCCCCcceee-cCccccCCCCCCEEEccCCCCCCCC---CccccCCCCCCCEEEccCCC--CCc-c
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGT-ISPALLKLHDLRHLDLSNNHFGGSP---LPEFIGSLSRLRYLNLSCGT--SLL-K 155 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~L~~n~--~~~-~ 155 (524)
.+++.|+|+++ ..+... ++..+..+++|++|+|++|.+++.. ++.....+++|++|++++|. +.. .
T Consensus 130 ~~L~~L~L~~~-------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 130 KNFKVLVLSSC-------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp TTCCEEEEESC-------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred CCCcEEeCCCc-------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 47888888875 133322 3344457888888888888776642 22233466788888888775 211 1
Q ss_pred CCccccCCCCCcEEEccCCC-CCCCCCchhcC------------------------------------------------
Q 009835 156 VPRPFQYLSGLVYLHLENSN-LFSLGSLQWLS------------------------------------------------ 186 (524)
Q Consensus 156 ~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~------------------------------------------------ 186 (524)
++..+.++++|++|++++|. +.. .+..+.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 11122446777777777661 110 011111
Q ss_pred ------CCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccC---------
Q 009835 187 ------HLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSD--------- 251 (524)
Q Consensus 187 ------~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~--------- 251 (524)
.+++|++|++++|.++... +...+..+++|++|++++| +..... ..+...+++|++|++.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~-~~~~~l--~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY-IEDAGL--EVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG-GHHHHH--HHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc-cCHHHH--HHHHHhCCCCCEEEEecCcccccccC
Confidence 3456666666666643221 1223445666666666665 221100 02222236777777733
Q ss_pred CCCCCCCCCchhhhccccccEEEeeccccccccchhhh-cccccceEeec--C----ccccc-----ccchhhcCCCCCC
Q 009835 252 NNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYLT--S----NELEG-----GIPKFFGKMCSLN 319 (524)
Q Consensus 252 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~-----~~p~~l~~l~~L~ 319 (524)
+.+++ .....+....++|++|.++.|.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+
T Consensus 357 ~~l~~-~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 357 VALTE-QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SCCCH-HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCH-HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 33322 11222333345788887777777765555554 47788888887 3 44442 1222356677888
Q ss_pred EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-C-CCCCCCcEEEccCCcCccccch-hhhcCCCCC
Q 009835 320 RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-L-GGFSSLKILVLGENRLNGTIDK-SLSQLLKLE 396 (524)
Q Consensus 320 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~ 396 (524)
+|++++ .+++.....+... +++|+.|++++|.+++.... + ..+++|++|+|++|.+++.... ....+++|+
T Consensus 436 ~L~L~~-~l~~~~~~~l~~~-----~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 436 RLSLSG-LLTDKVFEYIGTY-----AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp EEECCS-SCCHHHHHHHHHH-----CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred EEeecC-cccHHHHHHHHHh-----chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 888876 6666555555541 23788888888887654332 2 5678888888888888654443 344578888
Q ss_pred EEECcCCcCe
Q 009835 397 SLSLGRNSFT 406 (524)
Q Consensus 397 ~L~l~~N~l~ 406 (524)
.|++++|+++
T Consensus 510 ~L~l~~~~~~ 519 (594)
T 2p1m_B 510 SLWMSSCSVS 519 (594)
T ss_dssp EEEEESSCCB
T ss_pred EEeeeCCCCC
Confidence 8888888774
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=172.62 Aligned_cols=158 Identities=24% Similarity=0.288 Sum_probs=138.4
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccc-hhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIP-EAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
-+++++++|.+ ..+|..+ .+.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 13 ~~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 45888988888 4566544 3467899999999987644 4578999999999999999988888899999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
|++|.+++..+..|..++ +|++|+|++|++++..|. +..+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus 88 Ls~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLE------SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCSSCCCCCCGGGGTTCS------SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCCccCccCHhHhcCCc------CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 999999998888888766 999999999999998776 9999999999999999999889999999999999999
Q ss_pred CCcCeeeCCCC
Q 009835 402 RNSFTGKIPLG 412 (524)
Q Consensus 402 ~N~l~~~~p~~ 412 (524)
+|++.+.++..
T Consensus 162 ~N~l~c~c~l~ 172 (220)
T 2v70_A 162 ANPFNCNCYLA 172 (220)
T ss_dssp SCCEECSGGGH
T ss_pred CcCCcCCCchH
Confidence 99999988754
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.6e-20 Score=171.68 Aligned_cols=157 Identities=25% Similarity=0.312 Sum_probs=138.3
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
-+.++++++.+ ..+|..+. ++++.|++++|.+++..+..+..+++|+.|+|++|.+++..|..|.++++|++|+|
T Consensus 13 ~~~v~c~~~~l--~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 13 NNIVDCRGKGL--TEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TTEEECTTSCC--SSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CCEEEcCCCCc--CcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 36788888888 45665443 58999999999999777778999999999999999999888999999999999999
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
++|.++...+..|..++ +|++|+|++|++++..+. +..+++|+.|+|++|++++..+..+..+++|+.|++++
T Consensus 88 s~N~l~~l~~~~f~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLF------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCccCHhHccCCC------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 99999987777777665 999999999999998776 99999999999999999988888899999999999999
Q ss_pred CcCeeeCCC
Q 009835 403 NSFTGKIPL 411 (524)
Q Consensus 403 N~l~~~~p~ 411 (524)
|++.+.++.
T Consensus 162 N~~~c~c~l 170 (220)
T 2v9t_B 162 NPFICDCHL 170 (220)
T ss_dssp SCEECSGGG
T ss_pred CCcCCCCcc
Confidence 999987653
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=5.7e-19 Score=185.30 Aligned_cols=143 Identities=24% Similarity=0.293 Sum_probs=99.9
Q ss_pred CCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcc
Q 009835 188 LSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLS 267 (524)
Q Consensus 188 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 267 (524)
+++|++|++++|.+++++. +.. +|++|++++|.+++... .+++|++|++++|.+++ ++. .+
T Consensus 99 l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~--lp~----~l 159 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE----LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNNQLTM--LPE----LP 159 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC--CCC----CC
T ss_pred cCCCCEEEccCCCCCCcch----hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCCccCc--CCC----cC
Confidence 3444455555554444331 222 55666666666555222 22788888888888843 444 34
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCC-------CEEEccCCCCCCchhHHHHhcc
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSL-------NRLCLPYNKLSGDLSEMIQNLS 340 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~ 340 (524)
++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|.|+. +|..+..++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~ 230 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLD 230 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSC
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCC
Confidence 599999999999996 666 65 89999999999999 6666 554 77 999999999995 566666565
Q ss_pred CCCCCCCccEEEcCCCCCccCCCC
Q 009835 341 GGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 341 ~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
+|+.|+|++|.+++..|.
T Consensus 231 ------~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 231 ------PTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp ------TTEEEECCSSSCCHHHHH
T ss_pred ------CCCEEEeeCCcCCCcCHH
Confidence 999999999999987764
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=9.1e-19 Score=160.82 Aligned_cols=181 Identities=25% Similarity=0.262 Sum_probs=140.7
Q ss_pred CEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEcc
Q 009835 118 RHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLS 197 (524)
Q Consensus 118 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 197 (524)
+.++.+++.++. +|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+..++. ..+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-hhcCCCCCcCEEECC
Confidence 567777777766 55444 4689999999999998877788999999999999999986654 557889999999999
Q ss_pred CCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeec
Q 009835 198 YINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGF 277 (524)
Q Consensus 198 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 277 (524)
+|.++..+ ...+..+++|++|++++|.+.+..+. .+... ++|++|++++|.++ .+++..+...++|++|++++
T Consensus 85 ~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 85 TNQLQSLP--NGVFDKLTQLKELALNTNQLQSLPDG--VFDKL-TQLKDLRLYQNQLK--SVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp SSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCS
T ss_pred CCcCCccC--HhHhcCccCCCEEEcCCCcCcccCHh--HhccC-CcCCEEECCCCccc--eeCHHHhccCCCccEEEecC
Confidence 99998775 24578889999999999988877663 23334 88888898888884 45555444445888888888
Q ss_pred cccccccchhhhcccccceEeecCcccccccchhhcCCCC
Q 009835 278 NSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCS 317 (524)
Q Consensus 278 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 317 (524)
|.+.+. +++|+.|+++.|.++|.+|..++.++.
T Consensus 158 N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 158 NPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 877643 457888888888888888887776654
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=7.8e-19 Score=163.78 Aligned_cols=159 Identities=25% Similarity=0.227 Sum_probs=139.1
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
..-+.++.+++.+ ..+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.+....+..|..+++|++|
T Consensus 19 Cs~~~v~c~~~~l--~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 19 CSGTTVDCRSKRH--ASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp EETTEEECTTSCC--SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeCCEeEccCCCc--CccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 4567789988888 45666443 589999999999998888899999999999999999987666778999999999
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
+|++|.+++..+..|..++ +|++|+|++|+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~------~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLV------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCccChhHhCcch------hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999999988777777665 9999999999999665568999999999999999997777789999999999999
Q ss_pred CCcCeeeCCC
Q 009835 402 RNSFTGKIPL 411 (524)
Q Consensus 402 ~N~l~~~~p~ 411 (524)
+|++.+.++.
T Consensus 168 ~N~~~c~c~~ 177 (229)
T 3e6j_A 168 GNPWDCECRD 177 (229)
T ss_dssp TSCBCTTBGG
T ss_pred CCCccCCcch
Confidence 9999988764
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=6.1e-18 Score=157.67 Aligned_cols=160 Identities=23% Similarity=0.230 Sum_probs=127.0
Q ss_pred CCCCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEE
Q 009835 66 DKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYL 145 (524)
Q Consensus 66 ~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L 145 (524)
.+...|.|.+|.|+.. .+ ..+|..+. ++|++|+|++|.+++. .|..|..+++|++|
T Consensus 14 ~~~~~Cs~~~v~c~~~--------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 69 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK--------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKEL 69 (229)
T ss_dssp CTTCEEETTEEECTTS--------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEeCCEeEccCC--------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEE
Confidence 3778899999999631 12 23444443 8899999999999986 78889999999999
Q ss_pred EccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCC
Q 009835 146 NLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSC 225 (524)
Q Consensus 146 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 225 (524)
+|++|.+....+..|.++++|++|+|++|.++.++. ..+..+++|++|++++|.++..+ ..+..+++|++|++++|
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELP---RGIERLTHLTHLALDQN 145 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCC---TTGGGCTTCSEEECCSS
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccC---cccccCCCCCEEECCCC
Confidence 999999987777778999999999999999986654 55788999999999999988664 36688888888888888
Q ss_pred CCCCCCCCchhhhcccCcccEEEccCCCCCC
Q 009835 226 ALPPINPSSIWHFNLSTSIETLDLSDNNLPS 256 (524)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 256 (524)
.+.+..+. .+..+ ++|++|++++|.+..
T Consensus 146 ~l~~~~~~--~~~~l-~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 146 QLKSIPHG--AFDRL-SSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTT--TTTTC-TTCCEEECTTSCBCT
T ss_pred cCCccCHH--HHhCC-CCCCEEEeeCCCccC
Confidence 88876653 23333 778888888887754
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.7e-18 Score=166.16 Aligned_cols=171 Identities=25% Similarity=0.299 Sum_probs=96.8
Q ss_pred cCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCC
Q 009835 112 LKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSL 191 (524)
Q Consensus 112 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 191 (524)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+..++ .+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS---SLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG---GGTTCTTC
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh---hhccCCCC
Confidence 456667777777777665 33 36666777777777776665443 666777777777777666432 26666667
Q ss_pred cEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccccc
Q 009835 192 RHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQ 271 (524)
Q Consensus 192 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 271 (524)
++|++++|.++..+ .+..+++|++|++++|.+.+. + .+..+ ++|++|++++|.+.+ +++ +... ++|+
T Consensus 115 ~~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~-~---~l~~l-~~L~~L~L~~N~l~~--~~~-l~~l-~~L~ 181 (291)
T 1h6t_A 115 KSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI-T---VLSRL-TKLDTLSLEDNQISD--IVP-LAGL-TKLQ 181 (291)
T ss_dssp CEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC-G---GGGGC-TTCSEEECCSSCCCC--CGG-GTTC-TTCC
T ss_pred CEEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc-h---hhccC-CCCCEEEccCCcccc--chh-hcCC-CccC
Confidence 77777666666542 455566666666666655544 1 22233 555555555555532 222 2222 2555
Q ss_pred EEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 272 YLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 272 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 182 ~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 182 NLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 55555555553 22 2445555555555555554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.9e-18 Score=164.35 Aligned_cols=173 Identities=24% Similarity=0.370 Sum_probs=114.9
Q ss_pred hhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhc
Q 009835 211 VAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQL 290 (524)
Q Consensus 211 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 290 (524)
...+++|+.|++++|.+.... .+..+ ++|++|++++|.+.+ +++ +... ++|++|++++|.+++ ++ .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~----~~~~l-~~L~~L~L~~n~l~~--~~~-l~~l-~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ----GIQYL-PNVTKLFLNGNKLTD--IKP-LANL-KNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT----TGGGC-TTCCEEECCSSCCCC--CGG-GTTC-TTCCEEECCSSCCCC-GG-GGTT
T ss_pred hhhcCcccEEEccCCCcccCh----hHhcC-CCCCEEEccCCccCC--Ccc-cccC-CCCCEEECCCCcCCC-Ch-hhcc
Confidence 345556666666666555442 12223 666666666666633 333 3333 367777777777764 22 3667
Q ss_pred ccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCC
Q 009835 291 MVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370 (524)
Q Consensus 291 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~ 370 (524)
+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..++ +|+.|++++|.+++..+ +..+++
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~L~~N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP-LAGLTK 179 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCCCGG-GTTCTT
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCC------CCCEEEccCCccccchh-hcCCCc
Confidence 77777777777777743 3567777788888888877765 3444443 78888888888877655 777888
Q ss_pred CcEEEccCCcCccccchhhhcCCCCCEEECcCCcCee
Q 009835 371 LKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88888888888753 3 37788888888888888774
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=9.4e-19 Score=174.91 Aligned_cols=179 Identities=25% Similarity=0.247 Sum_probs=131.2
Q ss_pred CEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh-ccccccEEEeeccccccccchhhhcccccce
Q 009835 218 KTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN-LSRNIQYLNLGFNSLQGSIPEAFQLMVSLRF 296 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 296 (524)
+.++++++.+...+. . ....++.|+|++|.++ .+++..+. ..++|+.|++++|++++..+..|..+++|++
T Consensus 21 ~~l~c~~~~l~~iP~---~---~~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ---S---LPSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCS---S---CCTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccCc---c---CCCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 345555555554332 1 1155777777777773 34444342 3448888888888888766677888888888
Q ss_pred EeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-C---CCCCCCc
Q 009835 297 LYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-L---GGFSSLK 372 (524)
Q Consensus 297 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~---~~l~~L~ 372 (524)
|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..++ +|+.|+|++|++++.++. + ..+++|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc------cCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 88888888877677788888888888888888877777777655 888888888888876655 4 5688999
Q ss_pred EEEccCCcCccccchhhhcCCC--CCEEECcCCcCeeeCC
Q 009835 373 ILVLGENRLNGTIDKSLSQLLK--LESLSLGRNSFTGKIP 410 (524)
Q Consensus 373 ~L~Ls~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~p 410 (524)
.|+|++|++++..+..+..++. ++.|++++|++.+.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 9999999998776677888876 4889999999987654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=4e-18 Score=180.79 Aligned_cols=174 Identities=24% Similarity=0.283 Sum_probs=124.8
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+..++ .+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT---TSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh---hhccCCC
Confidence 4567788888888888876 33 47778888888888888876554 788888888888888887654 3778888
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 270 (524)
|++|+|++|.+...+ .+..+++|+.|+|++|.+.+. + .+..+ ++|+.|+|++|.+.+ +++ +..+ ++|
T Consensus 111 L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l-~~L~~L~Ls~N~l~~--~~~-l~~l-~~L 177 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI-T---VLSRL-TKLDTLSLEDNQISD--IVP-LAGL-TKL 177 (605)
T ss_dssp CCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC-G---GGGSC-TTCSEEECCSSCCCC--CGG-GTTC-TTC
T ss_pred CCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc-h---hhccc-CCCCEEECcCCcCCC--chh-hccC-CCC
Confidence 888888888877653 577778888888888877765 2 33334 777777777777743 233 3333 377
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccc
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGG 307 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 307 (524)
+.|+|++|.+++. + .+..+++|+.|+|++|.+.+.
T Consensus 178 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 7777777777653 2 466777777777777777643
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.2e-18 Score=174.28 Aligned_cols=177 Identities=24% Similarity=0.200 Sum_probs=146.6
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh-cccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-LMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
-+.++++++++ ..+|..+ ++.++.|++++|++++..+..+. .+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 20 ~~~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 46899999999 4566644 34799999999999987777777 899999999999999988888999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhh---hcCCCCCEE
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSL---SQLLKLESL 398 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L 398 (524)
|++|+++...+..|..++ +|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+ ..+++|+.|
T Consensus 95 Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCCcCCcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 999999988777787765 999999999999988776 9999999999999999996555555 679999999
Q ss_pred ECcCCcCeeeCCCC-Ccccc--cccccccCCCCCCC
Q 009835 399 SLGRNSFTGKIPLG-TQLQS--FNASVYAGNPELCG 431 (524)
Q Consensus 399 ~l~~N~l~~~~p~~-~~~~~--~~~~~~~gn~~~C~ 431 (524)
+|++|++++..+.. ..+.. +..+.+.+||+.|+
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99999999533221 11222 24568999999996
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=9.1e-18 Score=152.69 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=108.9
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+. .++ .+.... +|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~-~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAH-NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCT-TCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred CCccEEeccCCCcc--ChH-HHhcCC-CCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 66777777777663 333 333333 77777777776652 2366777888888888888877677778888888888
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++++|.+++..+..+..++ +|++|++++|...+.++.+..+++|+.|++++|.+++ ++ .+..+++|+.|+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLP------KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred EecCCccCcHhHHHHhhCC------CCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 8888888877777777655 7888888888733344567888888999999888885 33 67888889999999
Q ss_pred CCcCee
Q 009835 402 RNSFTG 407 (524)
Q Consensus 402 ~N~l~~ 407 (524)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 988764
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=4.2e-18 Score=157.73 Aligned_cols=153 Identities=25% Similarity=0.315 Sum_probs=135.8
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
-+.++.+++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..++ +|+
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~------~L~ 83 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR------SLN 83 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS------SCC
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc------CCC
Confidence 467899999998 5666553 6899999999999987778999999999999999999998888888766 999
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCC-CcccccccccccCCC
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLG-TQLQSFNASVYAGNP 427 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~gn~ 427 (524)
+|+|++|.++..++. +..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.+||
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999999987776 789999999999999999998999999999999999999999776643 346777888999999
Q ss_pred CCCC
Q 009835 428 ELCG 431 (524)
Q Consensus 428 ~~C~ 431 (524)
+.|+
T Consensus 164 ~~c~ 167 (220)
T 2v9t_B 164 FICD 167 (220)
T ss_dssp EECS
T ss_pred cCCC
Confidence 9996
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.6e-18 Score=181.15 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=145.3
Q ss_pred CCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEE
Q 009835 141 RLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTL 220 (524)
Q Consensus 141 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 220 (524)
.+..+.+..+.+....+ +..+++|+.|++++|.+..++. +..+++|++|+|++|.+.+.+ .+..+++|+.|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIK----PLTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCG----GGGGCTTCCEE
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCCh----hhccCCCCCEE
Confidence 34555666666665443 5678899999999999886653 788999999999999988775 27889999999
Q ss_pred EeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeec
Q 009835 221 VLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLT 300 (524)
Q Consensus 221 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 300 (524)
+|++|.+.+.. .+..+ ++|++|+|++|.+.+ .+.+..+. +|+.|+|++|.+++. ..+..+++|+.|+|+
T Consensus 93 ~Ls~N~l~~l~----~l~~l-~~L~~L~Ls~N~l~~---l~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 93 FLDENKIKDLS----SLKDL-KKLKSLSLEHNGISD---INGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp ECCSSCCCCCT----TSTTC-TTCCEEECTTSCCCC---CGGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred ECcCCCCCCCh----hhccC-CCCCEEEecCCCCCC---CccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 99999887643 23444 889999999998844 24444444 888888888888864 567788888888888
Q ss_pred CcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC
Q 009835 301 SNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP 363 (524)
Q Consensus 301 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~ 363 (524)
+|.+.+..| +..+++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+++.+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l------~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGL------KNLDVLELFSQECLNKPI 214 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTC------TTCSEEECCSEEEECCCC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccC------CCCCEEEccCCcCcCCcc
Confidence 888886655 78888888888888888764 234443 488888888888876543
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2e-18 Score=156.35 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=101.7
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccccch-hhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPK-FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
+.+++++|.++ .+|..+. .+|++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|..++ +|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------HIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT------TCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc------cCC
Confidence 45555555554 3444332 2566666666666644443 366666777777777777666666665544 677
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCCCCcccccccccccCCCC
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPLGTQLQSFNASVYAGNPE 428 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~gn~~ 428 (524)
+|+|++|++++..+. +.++++|++|+|++|++++..|..+..+++|++|++++|+++|.++.......+....+.++..
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~ 161 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAA 161 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCC
Confidence 777777777776665 7778888888888888888888888888888888888888888777543333333334455555
Q ss_pred CCCCCC
Q 009835 429 LCGLPL 434 (524)
Q Consensus 429 ~C~~~~ 434 (524)
.|+.|.
T Consensus 162 ~C~~P~ 167 (192)
T 1w8a_A 162 RCGAPS 167 (192)
T ss_dssp BBCSST
T ss_pred CCCCCh
Confidence 665543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=3.1e-21 Score=203.48 Aligned_cols=216 Identities=19% Similarity=0.170 Sum_probs=121.2
Q ss_pred CCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccC
Q 009835 137 GSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRS 216 (524)
Q Consensus 137 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 216 (524)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|... .. +. ..+. .+...+. .+..++.+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l-~~----l~--~ll~-----~~~~~~~--~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL-LT----II--LLMR-----ALDPLLY--EKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHH-HH----HH--HHHH-----HHCTGGG--HHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhh-hh----HH--HHHH-----hcccccC--CHHHHHHHHh
Confidence 45666777777766664 55667777777777776554310 00 00 0000 0111111 1455666666
Q ss_pred CCEEE-eeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccc
Q 009835 217 LKTLV-LHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLR 295 (524)
Q Consensus 217 L~~L~-L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 295 (524)
|+.|+ ++.|.+ ..|+.+.+++|.+. .++. ..|+.|++++|.+++ +|. ++.+++|+
T Consensus 411 L~~L~~l~~n~~--------------~~L~~l~l~~n~i~--~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~ 466 (567)
T 1dce_A 411 LKAVDPMRAAYL--------------DDLRSKFLLENSVL--KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVT 466 (567)
T ss_dssp HHHHCGGGHHHH--------------HHHHHHHHHHHHHH--HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred cccCcchhhccc--------------chhhhhhhhccccc--ccCc------cCceEEEecCCCCCC-CcC-ccccccCc
Confidence 66665 333311 33444444444441 1111 146666666666664 444 66666777
Q ss_pred eEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC-CC-CCCCCCCcE
Q 009835 296 FLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL-PD-LGGFSSLKI 373 (524)
Q Consensus 296 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-~~-~~~l~~L~~ 373 (524)
.|+|++|.++ .+|..++.+++|+.|+|++|.+++. | .+..++ +|+.|+|++|++++.. |. +..+++|+.
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~------~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLP------RLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCS------SCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCC------CCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 7777777766 5666667777777777777777653 3 444443 6777777777777664 43 677777777
Q ss_pred EEccCCcCccccch---hhhcCCCCCEEEC
Q 009835 374 LVLGENRLNGTIDK---SLSQLLKLESLSL 400 (524)
Q Consensus 374 L~Ls~N~l~~~~p~---~~~~l~~L~~L~l 400 (524)
|+|++|.+++..|. .+..+++|+.|++
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777655442 2344677777754
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=153.89 Aligned_cols=156 Identities=24% Similarity=0.219 Sum_probs=124.1
Q ss_pred CEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceE
Q 009835 218 KTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFL 297 (524)
Q Consensus 218 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 297 (524)
+.+++++|.++..+. .+ ...+++|++++|.+++ ..+...+...++|++|++++|.+++..+..|..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~---~~---~~~~~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE---HI---PQYTAELRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCS---CC---CTTCSEEECCSSCCCE-ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCcc---CC---CCCCCEEEcCCCcCCc-cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 356666666655432 11 2566788888888854 2233444444589999999999987777788999999999
Q ss_pred eecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEc
Q 009835 298 YLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVL 376 (524)
Q Consensus 298 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~L 376 (524)
+|++|.+++..+..|..+++|++|+|++|.+++..|..|..++ +|++|+|++|++++..|. +..+++|+.|++
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT------TCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc------cCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 9999999988888899999999999999999988888887765 899999999999988776 899999999999
Q ss_pred cCCcCccccc
Q 009835 377 GENRLNGTID 386 (524)
Q Consensus 377 s~N~l~~~~p 386 (524)
++|.+.+..+
T Consensus 161 ~~N~l~c~c~ 170 (220)
T 2v70_A 161 LANPFNCNCY 170 (220)
T ss_dssp CSCCEECSGG
T ss_pred cCcCCcCCCc
Confidence 9999986544
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.2e-18 Score=189.32 Aligned_cols=262 Identities=19% Similarity=0.154 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHhcCCCC-CCCCCCCCCCCCCCCCCcccceEeCCCCCcEEEEEcCCCCCCCCCCCcceeecCccccCC
Q 009835 36 CIDEEREALLTFKQSLVDE-YGVLSSWGKDNDKRDCCKWRGVRCSNKTGHVKVLNLRRSDDENSRGTVLKGTISPALLKL 114 (524)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~-~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l 114 (524)
..+.++.+++++...+..+ ......|.. .....+.|.++.++. .+++.|+|.++ .+.. .+..+...
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n--------~~~~-~~~~~l~~ 195 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVST--PLTPKIELFAN--------GKDE-ANQALLQH 195 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceecC--CccceEEeeCC--------CCCc-chhhHhhc
Confidence 4566888999988776422 223345642 345567898888853 67899999875 3433 34333333
Q ss_pred CCCCEEEc-----cCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 115 HDLRHLDL-----SNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 115 ~~L~~L~L-----s~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+|+.+.+ +.|.+.. .+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++.++ ..+.+++
T Consensus 196 l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~ 270 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP--AEIKNLS 270 (727)
T ss_dssp ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCC--GGGGGGT
T ss_pred CccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccC--hhhhCCC
Confidence 33333332 2333331 4677888888999999888877 66777778888999999988888544 5578888
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhcccc
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRN 269 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 269 (524)
+|++|+|++|.++.++ ..+..+++|++|+|++|.+... |. .+..+ ++|++|+|++|.+++ .++..+......
T Consensus 271 ~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~~N~l~~l-p~--~~~~l-~~L~~L~L~~N~l~~-~~p~~~~~~~~~ 342 (727)
T 4b8c_D 271 NLRVLDLSHNRLTSLP---AELGSCFQLKYFYFFDNMVTTL-PW--EFGNL-CNLQFLGVEGNPLEK-QFLKILTEKSVT 342 (727)
T ss_dssp TCCEEECTTSCCSSCC---SSGGGGTTCSEEECCSSCCCCC-CS--STTSC-TTCCCEECTTSCCCS-HHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCCccC---hhhcCCCCCCEEECCCCCCCcc-Ch--hhhcC-CCccEEeCCCCccCC-CChHHHhhcchh
Confidence 8889999888888654 4678888888888888888754 43 34444 888888888888865 555544443323
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCc--------ccccccchhhcCCCCCCEEEccCCCCC
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSN--------ELEGGIPKFFGKMCSLNRLCLPYNKLS 329 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 329 (524)
+..+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++|.+.
T Consensus 343 ~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 343 GLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 34577888888877765 3455566665 333333444455666667777777664
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.5e-17 Score=147.02 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=111.1
Q ss_pred hcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcc
Q 009835 212 AKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLM 291 (524)
Q Consensus 212 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 291 (524)
..+++|++|++++|.+.... .+..+ ++|++|++++|.+. .++.+.... +|++|++++|.+++..+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~----~l~~l-~~L~~L~l~~n~~~---~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT----GIEYA-HNIKDLTINNIHAT---NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT----TGGGC-TTCSEEEEESCCCS---CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCCccChH----HHhcC-CCCCEEEccCCCCC---cchhhhcCC-CCCEEEeECCccCcccChhhcCC
Confidence 55667777777777766432 22333 77777777777652 234444444 88888888888887677778888
Q ss_pred cccceEeecCcccccccchhhcCCCCCCEEEccCCC-CCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCC
Q 009835 292 VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNK-LSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSS 370 (524)
Q Consensus 292 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~ 370 (524)
++|++|++++|.+++..|..+..+++|++|++++|. ++.. + .+..++ +|+.|++++|.+++.. .+..+++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~------~L~~L~l~~n~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLP------ELKSLNIQFDGVHDYR-GIEDFPK 182 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCS------SCCEEECTTBCCCCCT-TGGGCSS
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCC------CCCEEECCCCCCcChH-HhccCCC
Confidence 888888888888887778888888888888888887 6544 3 455544 8889999998888643 6788889
Q ss_pred CcEEEccCCcCcc
Q 009835 371 LKILVLGENRLNG 383 (524)
Q Consensus 371 L~~L~Ls~N~l~~ 383 (524)
|+.|++++|++.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999998763
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.4e-17 Score=149.21 Aligned_cols=180 Identities=22% Similarity=0.210 Sum_probs=132.7
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccch-hhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPE-AFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
-+++++++|++ ..+|..+. .++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|..+++|++|+
T Consensus 10 ~~~l~~s~~~l--~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGL--KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCC--SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCc--CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 36888888888 46666443 3899999999999866554 488899999999999999988889999999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchh-hhcCCCCCEEEC
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKS-LSQLLKLESLSL 400 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l 400 (524)
|++|.+++..+..|..++ +|++|+|++|++++..|. +..+++|++|+|++|.+.+..+.. +.. .++...+
T Consensus 85 Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~ 156 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLH------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSL 156 (192)
T ss_dssp CCSCCCCEECSSSSTTCT------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCC
T ss_pred CCCCcCCccCHHHhcCCC------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCC
Confidence 999999988887777655 899999999999998776 889999999999999998765522 111 1222234
Q ss_pred cCCcCeeeCCCCCcccccccccccCCCCCCCCCCCCCC
Q 009835 401 GRNSFTGKIPLGTQLQSFNASVYAGNPELCGLPLPNKC 438 (524)
Q Consensus 401 ~~N~l~~~~p~~~~~~~~~~~~~~gn~~~C~~~~~~~c 438 (524)
..+...+..|.. +.......+..+...|..+.+..|
T Consensus 157 ~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 157 NGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp SGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred CCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence 455666666643 233333445566666765544444
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.4e-17 Score=164.28 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=171.3
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC--------CCCCcEEEccCCCCCCCCCchhc
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY--------LSGLVYLHLENSNLFSLGSLQWL 185 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~ 185 (524)
+++|++|||++|++... ...-+.++.++.+.+..|. ..+.+|.+ +++|++|+|.+ .++.++. ..|
T Consensus 48 l~~L~~LdLs~n~i~~~--~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~-~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY--SGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED-AAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCE--EESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT-TTT
T ss_pred hccCeEEecCcceeEEe--cCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhH-HHh
Confidence 67788888888877621 1111122223444444442 23345666 88888888887 6665554 567
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCC----CCCCCCCchhhhcccCccc-EEEccCCCCCCCCCC
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCA----LPPINPSSIWHFNLSTSIE-TLDLSDNNLPSSSVY 260 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~ 260 (524)
.+|++|++|++++|.+..+.. .+|..+.++..+....+. ....... .+..+ ..|+ .+++.... .++
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~--~aF~~~~~l~~l~~~~~~~~~~~~~i~~~--~f~~~-~~L~~~i~~~~~~----~l~ 191 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLP--EALADSVTAIFIPLGSSDAYRFKNRWEHF--AFIEG-EPLETTIQVGAMG----KLE 191 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECT--TSSCTTTCEEEECTTCTHHHHTSTTTTTS--CEEES-CCCEEEEEECTTC----CHH
T ss_pred hcCcccceEEcCCCCccccch--hhhcCCCceEEecCcchhhhhcccccccc--ccccc-cccceeEEecCCC----cHH
Confidence 888888888888887766542 456666666655554421 1111111 22233 4555 44444321 233
Q ss_pred chhhhc---cccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHH
Q 009835 261 PWLFNL---SRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQ 337 (524)
Q Consensus 261 ~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 337 (524)
..++.. ..++..+.+.++-...........+++|+.|++++|+++...+.+|.++++|+.+++.+| +..+.+..|.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence 333322 336777777665333222222234789999999999998777788999999999999998 7777778888
Q ss_pred hccCCCCCCCcc-EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEEC
Q 009835 338 NLSGGCTMNSLE-GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSL 400 (524)
Q Consensus 338 ~l~~~~~~~~L~-~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 400 (524)
.+. +|+ .+++.+ .++.+.+. |.++++|+.+++++|.++...+..|.++++|+.++.
T Consensus 271 ~~~------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCG------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCT------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCh------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 766 899 999988 67766655 999999999999999999777888999999998864
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3e-17 Score=156.31 Aligned_cols=147 Identities=22% Similarity=0.321 Sum_probs=82.5
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEE
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRL 321 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 321 (524)
++|++|++++|.+. .++ .+... ++|++|++++|.+++..+ +..+++|++|++++|++++ +|. +.. ++|++|
T Consensus 41 ~~L~~L~l~~n~i~--~l~-~l~~l-~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLA-GMQFF-TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRL 111 (263)
T ss_dssp TTCSEEECTTSCCC--CCT-TGGGC-TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEE
T ss_pred CcCcEEECcCCCcc--cch-HHhhC-CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEE
Confidence 55555555555552 222 22222 255666666655554332 5556666666666666653 222 222 566666
Q ss_pred EccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECc
Q 009835 322 CLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLG 401 (524)
Q Consensus 322 ~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 401 (524)
++++|.+++.. .+..+ ++|+.|++++|++++. +.+..+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 112 ~L~~N~l~~~~--~l~~l------~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 112 FLDNNELRDTD--SLIHL------KNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp ECCSSCCSBSG--GGTTC------TTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred EccCCccCCCh--hhcCc------ccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 66666665531 23333 3666666666666654 3466667777777777777654 456667777777777
Q ss_pred CCcCeee
Q 009835 402 RNSFTGK 408 (524)
Q Consensus 402 ~N~l~~~ 408 (524)
+|++++.
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 7776644
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=146.01 Aligned_cols=131 Identities=21% Similarity=0.317 Sum_probs=93.4
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccE
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEG 350 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~ 350 (524)
+.+++++|.++ .+|..+ .++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..++ +|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~------~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT------QLLT 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT------TCCE
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC------CCCE
Confidence 45555555555 344332 245666666666666 4556666677777777777777666666665554 7777
Q ss_pred EEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 351 VCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 351 L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
|+|++|++++..+. +..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+.+..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 77777777777665 78888999999999999876666788899999999999999987653
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.3e-16 Score=139.44 Aligned_cols=131 Identities=24% Similarity=0.211 Sum_probs=109.4
Q ss_pred ccccEEEeeccccc-cccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 268 RNIQYLNLGFNSLQ-GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP------ 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC------
Confidence 47888888888887 56777778888888999988888855 6788888999999999998887777777665
Q ss_pred CccEEEcCCCCCccCC--CCCCCCCCCcEEEccCCcCccccc---hhhhcCCCCCEEECcCCcCe
Q 009835 347 SLEGVCLEGNDITGPL--PDLGGFSSLKILVLGENRLNGTID---KSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~ 406 (524)
+|++|++++|.+++.. ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8999999999988764 458889999999999999986655 57889999999999999876
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3.7e-17 Score=177.64 Aligned_cols=181 Identities=22% Similarity=0.297 Sum_probs=115.9
Q ss_pred HhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhh
Q 009835 209 QVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAF 288 (524)
Q Consensus 209 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 288 (524)
..+..+++|+.|+|++|.+....+ .++.+ ++|++|+|++|.+ ..+|..+..+. +|+.|+|++|.++ .+|..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~---~~~~l-~~L~~L~Ls~N~l--~~lp~~~~~l~-~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISA---NIFKY-DFLTRLYLNGNSL--TELPAEIKNLS-NLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCG---GGGGC-CSCSCCBCTTSCC--SCCCGGGGGGT-TCCEEECTTSCCS-SCCSSG
T ss_pred hhhccCCCCcEEECCCCCCCCCCh---hhcCC-CCCCEEEeeCCcC--cccChhhhCCC-CCCEEeCcCCcCC-ccChhh
Confidence 466777788888888888774443 45555 8899999999998 46777776665 9999999999998 778899
Q ss_pred hcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCC
Q 009835 289 QLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGF 368 (524)
Q Consensus 289 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l 368 (524)
+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+. ..+..++|++|.+++.+|.
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-----~~~~~l~l~~N~l~~~~p~---- 359 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS-----VTGLIFYLRDNRPEIPLPH---- 359 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCC----
T ss_pred cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc-----hhhhHHhhccCcccCcCcc----
Confidence 99999999999999998 7788899999999999999999999998886643 0234578999999887664
Q ss_pred CCCcEEEccCC--------cCccccchhhhcCCCCCEEECcCCcCeee
Q 009835 369 SSLKILVLGEN--------RLNGTIDKSLSQLLKLESLSLGRNSFTGK 408 (524)
Q Consensus 369 ~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 408 (524)
.|+.|++++| .+.+..+..+..+..+....+++|-+.+.
T Consensus 360 -~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 360 -ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -C-----------------------------------------CCCGG
T ss_pred -ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 5677777777 34444445556667777788888877643
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.5e-16 Score=148.15 Aligned_cols=150 Identities=20% Similarity=0.266 Sum_probs=71.7
Q ss_pred ccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCC
Q 009835 111 LLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSS 190 (524)
Q Consensus 111 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 190 (524)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+.+..+ +.++++|++|++++|.+..++. +.. ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPS-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CCC-SS
T ss_pred hhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---ccc-Cc
Confidence 4445555555555555544 23 34455555555555555544332 4555555555555555544332 122 44
Q ss_pred CcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccc
Q 009835 191 LRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNI 270 (524)
Q Consensus 191 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 270 (524)
|++|++++|.+++.+ .+..+ ++|++|++++|++++ + +.+... ++|
T Consensus 108 L~~L~L~~N~l~~~~----~l~~l---------------------------~~L~~L~Ls~N~i~~--~-~~l~~l-~~L 152 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD----SLIHL---------------------------KNLEILSIRNNKLKS--I-VMLGFL-SKL 152 (263)
T ss_dssp CCEEECCSSCCSBSG----GGTTC---------------------------TTCCEEECTTSCCCB--C-GGGGGC-TTC
T ss_pred ccEEEccCCccCCCh----hhcCc---------------------------ccccEEECCCCcCCC--C-hHHccC-CCC
Confidence 555555555444431 24444 455555555555522 1 122222 255
Q ss_pred cEEEeeccccccccchhhhcccccceEeecCccccc
Q 009835 271 QYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEG 306 (524)
Q Consensus 271 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 306 (524)
+.|++++|.+++. ..+..+++|+.|++++|.+..
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 5555555555543 344555555555555555553
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=4.2e-16 Score=134.85 Aligned_cols=127 Identities=23% Similarity=0.221 Sum_probs=107.0
Q ss_pred ccccEEEeeccccc-cccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCC
Q 009835 268 RNIQYLNLGFNSLQ-GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMN 346 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~ 346 (524)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP------ 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC------
Confidence 47888888888887 67777778888999999999988865 6788889999999999999887888877766
Q ss_pred CccEEEcCCCCCccCC--CCCCCCCCCcEEEccCCcCccccc---hhhhcCCCCCEEECcC
Q 009835 347 SLEGVCLEGNDITGPL--PDLGGFSSLKILVLGENRLNGTID---KSLSQLLKLESLSLGR 402 (524)
Q Consensus 347 ~L~~L~Ls~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~ 402 (524)
+|++|++++|.+++.. ..+..+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8999999999998753 448889999999999999987666 5788999999999864
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=7.2e-19 Score=185.37 Aligned_cols=192 Identities=19% Similarity=0.149 Sum_probs=138.2
Q ss_pred CCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhh
Q 009835 186 SHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFN 265 (524)
Q Consensus 186 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 265 (524)
..+++|+.|+|++|.++.. +..++.+++|+.|++++|.. .......+.. +...+ ..+..+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L---p~~i~~l~~L~~L~l~~n~~---------l~~l~~ll~~-----~~~~~-~~~~~l~~ 407 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL---QSELESCKELQELEPENKWC---------LLTIILLMRA-----LDPLL-YEKETLQY 407 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH---HHHHHHHHHHHHHCTTCHHH---------HHHHHHHHHH-----HCTGG-GHHHHHHH
T ss_pred ccCccceeccCChhhHHhh---HHHHHHHHHHHHhccccchh---------hhhHHHHHHh-----ccccc-CCHHHHHH
Confidence 5677778888888877644 46777788888887755421 0000000000 01111 22222222
Q ss_pred ccccccEEE--------------eeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCc
Q 009835 266 LSRNIQYLN--------------LGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 266 ~~~~L~~L~--------------Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 331 (524)
+. +|+.|+ +++|.++.. + ...|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .
T Consensus 408 l~-~L~~L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 408 FS-TLKAVDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp HH-HHHHHCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred HH-hcccCcchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 22 555555 334444321 1 1358999999999996 665 999999999999999999 6
Q ss_pred hhHHHHhccCCCCCCCccEEEcCCCCCccCCCCCCCCCCCcEEEccCCcCcccc-chhhhcCCCCCEEECcCCcCeeeCC
Q 009835 332 LSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPDLGGFSSLKILVLGENRLNGTI-DKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 332 ~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
+|..++.++ +|+.|+|++|.+++. |.++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus 478 lp~~~~~l~------~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 478 LPPALAALR------CLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCGGGGGCT------TCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cchhhhcCC------CCCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 677888766 999999999999984 58999999999999999999887 9999999999999999999998877
Q ss_pred CC
Q 009835 411 LG 412 (524)
Q Consensus 411 ~~ 412 (524)
..
T Consensus 551 ~~ 552 (567)
T 1dce_A 551 IQ 552 (567)
T ss_dssp CT
T ss_pred HH
Confidence 53
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.7e-16 Score=136.04 Aligned_cols=137 Identities=23% Similarity=0.212 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCCCCCCCCCcce-eecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLK-GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
.+++.|+++++ .++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+.+|..+.
T Consensus 24 ~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred ccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 45777777774 555 5677777777778888888877766 3 6677777788888887777776777777
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCch-HhhhcccCCCEEEeeCCCCCCC
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWF-QVVAKLRSLKTLVLHSCALPPI 230 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~ 230 (524)
++++|++|++++|.+..++....+..+++|++|++++|.++..+.+. ..+..+++|++|++++|.+...
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777888887777776554456777777777777777777664211 3566677777777777765543
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.3e-15 Score=135.91 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=97.0
Q ss_pred ccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 270 IQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 270 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
.+.+++++++++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KLT 79 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TCC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------ccC
Confidence 455666666665 334322 25677777777777765555667777777777777777766665555544 788
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
+|++++|.+++.++. +..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 888888888877666 67888999999999999866666678889999999999999987763
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1e-15 Score=132.33 Aligned_cols=130 Identities=23% Similarity=0.221 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCCCCCCCCCcce-eecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCcccc
Q 009835 83 GHVKVLNLRRSDDENSRGTVLK-GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQ 161 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 161 (524)
.+++.|+++++ .++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+.+|..+.
T Consensus 17 ~~l~~L~l~~n--------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNS--------RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTC--------BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCC--------cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 35666666664 455 5666666667777777777776665 2 5566667777777777766665666666
Q ss_pred CCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCc-hHhhhcccCCCEEEee
Q 009835 162 YLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDW-FQVVAKLRSLKTLVLH 223 (524)
Q Consensus 162 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~ 223 (524)
++++|++|++++|.+.+.+.+..+..+++|++|++++|.+++.+.+ ...+..+++|+.|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6667777777776666443334566666666666666666655421 1345566666666554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=9.6e-15 Score=132.05 Aligned_cols=129 Identities=25% Similarity=0.308 Sum_probs=111.9
Q ss_pred ccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEc
Q 009835 244 IETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCL 323 (524)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 323 (524)
-+++++++|.+ ..+|..+ .++|++|++++|.++ .+|..+..+++|+.|+|++|.+++..+..|.++++|++|+|
T Consensus 12 ~~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 12 DTVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 36788888888 4566543 348999999999998 67788999999999999999999888888999999999999
Q ss_pred cCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccc
Q 009835 324 PYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 324 s~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 384 (524)
++|.+++..+..|..++ +|+.|+|++|.++..++. +..+++|+.|++++|.+...
T Consensus 86 s~N~l~~i~~~~f~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLK------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCccCEeCHHHhCCCC------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999998888887765 999999999999988776 88999999999999998753
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.2e-14 Score=129.44 Aligned_cols=133 Identities=23% Similarity=0.251 Sum_probs=111.4
Q ss_pred cccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEE
Q 009835 243 SIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLC 322 (524)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 322 (524)
..+.++++++++ ..+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 8 ~~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 456788888888 4455433 34899999999999876667788899999999999999977777788999999999
Q ss_pred ccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccc
Q 009835 323 LPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTID 386 (524)
Q Consensus 323 Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 386 (524)
+++|.+++..+..+..++ +|++|++++|.+++.++. +..+++|++|++++|.+.+..|
T Consensus 83 l~~N~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLT------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCc------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999988777776655 899999999999987776 6889999999999999997665
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.8e-15 Score=147.64 Aligned_cols=261 Identities=14% Similarity=0.051 Sum_probs=181.5
Q ss_pred CCcEEEEEcCCCCCCCCCCCcce--eecCccccCCCCCCEEEccCCCCCCCCCccccCC--------CCCCCEEEccCCC
Q 009835 82 TGHVKVLNLRRSDDENSRGTVLK--GTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGS--------LSRLRYLNLSCGT 151 (524)
Q Consensus 82 ~~~v~~L~L~~~~~~~~~~~~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~--------l~~L~~L~L~~n~ 151 (524)
..+++.|||+++ .+. ...... ++.++.+.+..|.+. +..|.+ +++|++|+|.+ .
T Consensus 48 l~~L~~LdLs~n--------~i~~~~~~~~~---~~~~~~~~~~~~~I~----~~aF~~~~~~~~~g~~~L~~l~L~~-~ 111 (329)
T 3sb4_A 48 FPSLKVLDISNA--------EIKMYSGKAGT---YPNGKFYIYMANFVP----AYAFSNVVNGVTKGKQTLEKVILSE-K 111 (329)
T ss_dssp CTTCCEEEEEEE--------EECCEEESSSS---SGGGCCEEECTTEEC----TTTTEEEETTEEEECTTCCC-CBCT-T
T ss_pred hccCeEEecCcc--------eeEEecCcccc---ccccccccccccccC----HHHhcccccccccccCCCcEEECCc-c
Confidence 357899999985 444 222222 222556666666442 345666 89999999987 7
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCC----CCCCCCchHhhhcccCCC-EEEeeCCC
Q 009835 152 SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYIN----LTKSSDWFQVVAKLRSLK-TLVLHSCA 226 (524)
Q Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~l~~l~~L~-~L~L~~n~ 226 (524)
+..+.+.+|.++++|++|++++|.+..++. ..|.++.++.++.+..+. ..... ...+..+..|+ .+.+....
T Consensus 112 i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~--~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 112 IKNIEDAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWE--HFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTT--TSCEEESCCCEEEEEECTTC
T ss_pred ccchhHHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccc--ccccccccccceeEEecCCC
Confidence 877777889999999999999998876665 667788788877766532 11121 12455666776 45554321
Q ss_pred CCCCCCCchhhh---cccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcc
Q 009835 227 LPPINPSSIWHF---NLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNE 303 (524)
Q Consensus 227 l~~~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 303 (524)
. .+. ..+ ....+++.+.+.++-. . .....+...+++|+.+++++|+++...+..|.++++|+.|++.+|
T Consensus 189 ~---l~~--~~~~~~~~~~~~~~l~~~~~l~-~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 189 K---LED--EIMKAGLQPRDINFLTIEGKLD-N-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp C---HHH--HHHHTTCCGGGCSEEEEEECCC-H-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred c---HHH--HHhhcccCccccceEEEeeeec-H-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 1 111 111 1126677777766532 1 122233334568999999999998766778999999999999998
Q ss_pred cccccchhhcCCCCCC-EEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEc
Q 009835 304 LEGGIPKFFGKMCSLN-RLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVL 376 (524)
Q Consensus 304 l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~L 376 (524)
++...+.+|.++++|+ .+++.+ .++.+.+..|..++ +|+.+++++|.++.+.+. |.++++|+.++.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~------~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD------NLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT------TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc------cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7767778899999999 999998 77777788888766 899999999999987776 999999998864
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=2.3e-13 Score=137.17 Aligned_cols=263 Identities=14% Similarity=0.127 Sum_probs=172.6
Q ss_pred CCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcE
Q 009835 114 LHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRH 193 (524)
Q Consensus 114 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 193 (524)
+..++.+.+.++ ++.. -..+|.++ +|+.+++..+ +......+|.++ +|+.+++.. .+..++. ..|.+|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-DIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-STTTTCTTCCE
T ss_pred cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-HHhhCcccCCe
Confidence 466777777553 4443 34566664 6888888744 666666677774 688888875 5554444 55778888888
Q ss_pred EEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEE
Q 009835 194 LDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYL 273 (524)
Q Consensus 194 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 273 (524)
+++++|.++.++. ..|. ..+|+.+.+..+ +..... ..+..+++|+.+++..+ + ..+....+... +|+.+
T Consensus 185 l~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~---~aF~~~~~L~~l~l~~~-l--~~I~~~aF~~~-~L~~i 253 (401)
T 4fdw_A 185 ADLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGS---QAFLKTSQLKTIEIPEN-V--STIGQEAFRES-GITTV 253 (401)
T ss_dssp EECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECT---TTTTTCTTCCCEECCTT-C--CEECTTTTTTC-CCSEE
T ss_pred eecCCCcceEech--hhEe-ecccCEEEeCCc-hheehh---hHhhCCCCCCEEecCCC-c--cCccccccccC-CccEE
Confidence 8888887776653 3444 477888888644 444433 23333377888888764 3 35555556654 78888
Q ss_pred EeeccccccccchhhhcccccceEeecCcccc-----cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 274 NLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE-----GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 274 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
.+. +.++.....+|.++++|+.+++.+|.+. ...+.+|.++++|+.+++.. .++......|..+. +|
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~------~L 325 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR------KV 325 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC------SC
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC------Cc
Confidence 884 4455455667778888888888777654 34556777888888888873 46666666666654 77
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCC-CCCEEECcCCc
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLL-KLESLSLGRNS 404 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~ 404 (524)
+.+.|..+ ++.+... |.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 88888554 5444443 7777 788888888777655566666664 56677766654
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=2.4e-13 Score=137.05 Aligned_cols=253 Identities=13% Similarity=0.130 Sum_probs=196.2
Q ss_pred ceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCc
Q 009835 103 LKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSL 182 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 182 (524)
++..-..+|.++ +|+.+++..+ ++.. -..+|.++ +|+.+.+.. .+....+.+|.++++|+.+++.+|.++.++.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~- 197 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA- 197 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT-
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech-
Confidence 443444567775 7999999876 6654 45677775 799999984 7777777899999999999999999987765
Q ss_pred hhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 183 QWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 183 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
..|. +.+|+.+.+..+ +..+. ..+|.++++|+.+++..+ +..... ..+.. .+|+.+++.+ .+ ..+...
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~~---~aF~~-~~L~~i~lp~-~i--~~I~~~ 265 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPEN-VSTIGQ---EAFRE-SGITTVKLPN-GV--TNIASR 265 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCTT-CCEECT---TTTTT-CCCSEEEEET-TC--CEECTT
T ss_pred hhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCCC-ccCccc---ccccc-CCccEEEeCC-Cc--cEEChh
Confidence 4455 689999999854 66554 368999999999999875 444433 44555 7899999954 44 467777
Q ss_pred hhhccccccEEEeeccccc-----cccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHH
Q 009835 263 LFNLSRNIQYLNLGFNSLQ-----GSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQ 337 (524)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 337 (524)
.+..+++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++.....+|.++++|+.++|..+ ++......|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 7888889999999988765 34567899999999999994 577677789999999999999665 6666666666
Q ss_pred hccCCCCCCCccEEEcCCCCCccCCCC-CCCCC-CCcEEEccCCcCc
Q 009835 338 NLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFS-SLKILVLGENRLN 382 (524)
Q Consensus 338 ~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~-~L~~L~Ls~N~l~ 382 (524)
.+ +|+.+++++|.+...... |.+++ +++.|.+..+.+.
T Consensus 344 ~~-------~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 344 NT-------GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SS-------CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CC-------CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 53 799999999988876655 77774 7899999887653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.2e-14 Score=127.75 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=77.0
Q ss_pred cccEEEeeccccccccchhhhcc-cccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLM-VSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
+|+.|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++ +
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~ 89 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP------D 89 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT------T
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC------C
Confidence 45555555555552 232 2222 2566666666665543 3455666666666666666655444445544 6
Q ss_pred ccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCccccch----hhhcCCCCCEEECcCCcCe
Q 009835 348 LEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLNGTIDK----SLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~ 406 (524)
|++|++++|.++...+ .+..+++|+.|++++|.++ .+|. .+..+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666666654443 3667777888888888776 3444 3777888888888887654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.9e-14 Score=126.93 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=68.9
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCC
Q 009835 110 ALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLS 189 (524)
Q Consensus 110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 189 (524)
.+.++.+|++|++++|.++. +|......++|++|++++|.+.+. ..+..+++|++|++++|.+..++. ..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCC
Confidence 45567777777777777775 444333334777777777777654 456677777777777777665432 3345666
Q ss_pred CCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCC
Q 009835 190 SLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALP 228 (524)
Q Consensus 190 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 228 (524)
+|++|++++|.++..+. ...+..+++|+.|++++|.+.
T Consensus 89 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 89 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGG
T ss_pred CCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCC
Confidence 66666666666654432 124555555555555555554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=9.8e-16 Score=139.32 Aligned_cols=131 Identities=25% Similarity=0.298 Sum_probs=81.2
Q ss_pred hhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccC
Q 009835 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSG 341 (524)
Q Consensus 262 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 341 (524)
.+.... +|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++. | .+..++
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~- 115 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV- 115 (198)
T ss_dssp HHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH-
T ss_pred HHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC-
Confidence 343333 66666666666664 44 5666666666666666666 4555555556666666666666652 2 355544
Q ss_pred CCCCCCccEEEcCCCCCccCCC--CCCCCCCCcEEEccCCcCccccch----------hhhcCCCCCEEECcCCcCe
Q 009835 342 GCTMNSLEGVCLEGNDITGPLP--DLGGFSSLKILVLGENRLNGTIDK----------SLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 342 ~~~~~~L~~L~Ls~n~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~L~l~~N~l~ 406 (524)
+|+.|++++|++++..+ .+..+++|++|++++|.+.+..|. .+..+++|+.|| +|+++
T Consensus 116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 66677777666665332 356677777777777777655443 267778888776 55554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.5e-13 Score=121.52 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=82.3
Q ss_pred cceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCc
Q 009835 294 LRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLK 372 (524)
Q Consensus 294 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~ 372 (524)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..+..|..++ +|++|+|++|++++.++. +..+++|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT------QLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT------TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcc------cCCEEECCCCCcCccChhhccCCCCCC
Confidence 456667777666 3454432 5677777777777777666666654 778888888888777666 67888999
Q ss_pred EEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCCC
Q 009835 373 ILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIPL 411 (524)
Q Consensus 373 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 411 (524)
+|+|++|++++..+..|..+++|++|++++|++++.++.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 999999999877777788899999999999999887764
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=4.2e-13 Score=118.99 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=74.3
Q ss_pred ceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcE
Q 009835 295 RFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKI 373 (524)
Q Consensus 295 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~ 373 (524)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..++ +|++|+|++|++++.++. +..+++|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV------NLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc------CCCEEECCCCCCCccChhHhCCcchhhE
Confidence 45566666654 4444332 5666666666666666666665544 677777777777766665 677888888
Q ss_pred EEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 374 LVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 374 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888886666668888888888888888887655
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.2e-14 Score=132.11 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCCCcEEEccCCCCCCC----CCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCCCCCCCCch
Q 009835 187 HLSSLRHLDLSYINLTKS----SDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNLPSSSVYPW 262 (524)
Q Consensus 187 ~l~~L~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 262 (524)
....++.++++.+.+.+. ..++..+..+++|++|++++|.+.+. + .+..+ ++|++|++++|.+. .++..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~---~~~~l-~~L~~L~l~~n~l~--~l~~~ 88 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S---SLSGM-ENLRILSLGRNLIK--KIENL 88 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C---CHHHH-TTCCEEEEEEEEEC--SCSSH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c---ccccC-CCCCEEECCCCCcc--cccch
Confidence 344555555555544433 11223566666666666666666553 2 22333 66666666666662 34443
Q ss_pred hhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccc-hhhcCCCCCCEEEccCCCCCCc
Q 009835 263 LFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIP-KFFGKMCSLNRLCLPYNKLSGD 331 (524)
Q Consensus 263 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ 331 (524)
+.... +|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 89 ~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 89 DAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 33323 66666666666654 33 45556666666666666653222 3455566666666666655444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.1e-12 Score=115.85 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=78.3
Q ss_pred cccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCc
Q 009835 269 NIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSL 348 (524)
Q Consensus 269 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L 348 (524)
..+.+++++|.++. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..++ +|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT------QL 80 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC------CC
Confidence 34566666666663 44443 25677777777777766677777777777777777777776666666554 78
Q ss_pred cEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCcccc
Q 009835 349 EGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 349 ~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
++|+|++|++++.++. +..+++|++|+|++|.++...
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888888888877775 788889999999999887553
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=8.1e-14 Score=139.13 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh-----cccccceEeecCcccccc----cchhh
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ-----LMVSLRFLYLTSNELEGG----IPKFF 312 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~l 312 (524)
++|++|+|++|.++. .....+....++|+.|++++|.+++.....+. ..++|++|+|++|.++.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 355555555555533 22222333333556666666655543333221 234555666666555431 23333
Q ss_pred cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC-----CCCCCCCCcEEEccCCcCcccc
Q 009835 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-----DLGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
..+++|++|+|++|.+++.....+...- ...++|++|+|++|.++.... .+...++|++|+|++|.+++..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L--~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQL--DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHG--GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHH--hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 4555566666666655543322222100 011245555555555443211 1223445555555555554433
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=6.3e-12 Score=111.35 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCC
Q 009835 86 KVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSG 165 (524)
Q Consensus 86 ~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 165 (524)
+.++++++ .+ +.+|..+. ++|++|+|++|.+++. .|..|.++++|++|+|++|.+.+..+..|.++++
T Consensus 15 ~~l~~~~n--------~l-~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNI--------RL-ASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSS--------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCC--------CC-CccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 45777774 34 34565553 6777888888877775 5677777777777777777777665556677777
Q ss_pred CcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCC
Q 009835 166 LVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKS 204 (524)
Q Consensus 166 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 204 (524)
|++|+|++|++..++. ..+..+++|++|++++|.+...
T Consensus 83 L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTT
T ss_pred hhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccc
Confidence 7777777777775543 3466666667776666666544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=134.37 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=119.3
Q ss_pred CcccEEEccCCCCCCCCCCchhhhc----cccccEEEeeccccccccchhh-hcccccceEeecCcccccccchhh----
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNL----SRNIQYLNLGFNSLQGSIPEAF-QLMVSLRFLYLTSNELEGGIPKFF---- 312 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~l---- 312 (524)
+.|++|++++|.++. .....+... .++|++|++++|.+++.....+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 678888888888754 222222222 2489999999999976544443 356789999999999986554444
Q ss_pred -cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-CCCCCCCcEEEccCCcCccc--
Q 009835 313 -GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD-LGGFSSLKILVLGENRLNGT-- 384 (524)
Q Consensus 313 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~-~~~l~~L~~L~Ls~N~l~~~-- 384 (524)
...++|++|+|++|.+++.....+...- ...++|++|+|++|.+++.. .. +...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGL--AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHH--HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHH--hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3568999999999999865444443210 12348999999999998643 22 66778999999999999864
Q ss_pred --cchhhhcCCCCCEEECcCCcCee
Q 009835 385 --IDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 385 --~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
+...+...++|++|||++|+++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 34456678999999999999874
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=7.2e-11 Score=119.06 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=62.8
Q ss_pred ccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCC
Q 009835 268 RNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNS 347 (524)
Q Consensus 268 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~ 347 (524)
..++.+.+..+... .....+..+..++.+....+.+. ...|..+.+|+.+.+..+ +..+....|..+. +
T Consensus 253 ~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~------~ 321 (394)
T 4fs7_A 253 TDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT------S 321 (394)
T ss_dssp SSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT------T
T ss_pred ccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC------C
Confidence 34555555443322 22334444555555544443221 234555666666666543 4444444555443 6
Q ss_pred ccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcC
Q 009835 348 LEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGR 402 (524)
Q Consensus 348 L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 402 (524)
|+.+++..+ ++.+... |.++.+|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 666666543 4433333 666666666666655 4444455666666666666643
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.9e-11 Score=121.03 Aligned_cols=99 Identities=26% Similarity=0.251 Sum_probs=85.9
Q ss_pred cceeecCccccCCCCCCEEEccC-CCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCC
Q 009835 102 VLKGTISPALLKLHDLRHLDLSN-NHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLG 180 (524)
Q Consensus 102 ~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (524)
.++ .+|. +..+++|++|+|++ |.+++. .+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++..++
T Consensus 20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALD-SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCT-TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCC-ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 344 3788 99999999999996 999986 6688999999999999999999999999999999999999999999766
Q ss_pred CchhcCCCCCCcEEEccCCCCCCCC
Q 009835 181 SLQWLSHLSSLRHLDLSYINLTKSS 205 (524)
Q Consensus 181 ~~~~~~~l~~L~~L~Ls~n~l~~~~ 205 (524)
. ..+..++ |++|+|.+|.+....
T Consensus 97 ~-~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 97 W-KTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp S-TTTCSCC-CCEEECCSSCCCCCG
T ss_pred H-HHcccCC-ceEEEeeCCCccCCC
Confidence 4 4455565 999999999988653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.2e-11 Score=122.56 Aligned_cols=103 Identities=20% Similarity=0.152 Sum_probs=70.3
Q ss_pred EEEeecc-ccccccchhhhcccccceEeecC-cccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCcc
Q 009835 272 YLNLGFN-SLQGSIPEAFQLMVSLRFLYLTS-NELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLE 349 (524)
Q Consensus 272 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~ 349 (524)
.++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|+|++..+..|..++ +|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~------~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP------RLS 83 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS------CCC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc------CCC
Confidence 4566666 666 3666 77777777777775 777766666777777777777777777777766666655 677
Q ss_pred EEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCcc
Q 009835 350 GVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNG 383 (524)
Q Consensus 350 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 383 (524)
.|+|++|++++.++. +..++ |+.|+|.+|.+..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777777777766555 33333 7777777776653
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=6.3e-10 Score=112.10 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=158.3
Q ss_pred CccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCCC-------
Q 009835 108 SPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSLG------- 180 (524)
Q Consensus 108 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~------- 180 (524)
..+|.++.+|+.+.|..+ ++.. -..+|.++.+|+.+++.. .+......+|.++.+|+.+.+..+ +..++
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPD-SVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCC-CceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 345666777777777533 4443 345666777777777753 344444455666666666555432 11111
Q ss_pred --------------CchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccE
Q 009835 181 --------------SLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIET 246 (524)
Q Consensus 181 --------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 246 (524)
....|.++++|+.+.+.++. ..+. ...+.++.+|+.+.+..+ +...... .+..+ ..|+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~--~~~F~~c~~L~~i~l~~~-~~~I~~~--~F~~~-~~L~~ 212 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLH--NGLFSGCGKLKSIKLPRN-LKIIRDY--CFAEC-ILLEN 212 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEEC--TTTTTTCTTCCBCCCCTT-CCEECTT--TTTTC-TTCCB
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceec--cccccCCCCceEEEcCCC-ceEeCch--hhccc-cccce
Confidence 11346666777777765442 2222 235666677777666554 2222221 22223 66666
Q ss_pred EEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCC
Q 009835 247 LDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYN 326 (524)
Q Consensus 247 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 326 (524)
+.+..+.. .+....+... +|+.+.+... ++......+..+..|+.+.+..+... .....|..+..++.+....+
T Consensus 213 i~~~~~~~---~i~~~~~~~~-~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 213 MEFPNSLY---YLGDFALSKT-GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CCCCTTCC---EECTTTTTTC-CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred eecCCCce---EeehhhcccC-CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 66655432 2223333333 6777777543 22233446677788888888776544 55567778888888877765
Q ss_pred CCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCC
Q 009835 327 KLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRN 403 (524)
Q Consensus 327 ~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 403 (524)
.+. ...|..+ .+|+.+.+..+ ++.+... |.++.+|+.+++.++ ++.....+|.++.+|+.+++..|
T Consensus 287 ~i~---~~~F~~~------~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 287 IVP---EKTFYGC------SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEC---TTTTTTC------TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eec---ccccccc------ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 432 2334443 38899988765 5444444 888999999999754 66566778889999999988766
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.12 E-value=2.9e-09 Score=107.25 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=80.2
Q ss_pred chhhhcccccceEeecCcccccccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC
Q 009835 285 PEAFQLMVSLRFLYLTSNELEGGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD 364 (524)
Q Consensus 285 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 364 (524)
..+|..+.+|+.+.+.++... ....+|.++++|+.+.+. +.++......|..+. +|+.+++..+ ++.+...
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~------~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCI------SLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT------TCCEEECCTT-CCEECTT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCC------CcCEEEeCCc-ccEehHh
Confidence 446777888888888765443 555678888888888886 445556666676655 8889988764 4444443
Q ss_pred -CCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCc
Q 009835 365 -LGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNS 404 (524)
Q Consensus 365 -~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 404 (524)
|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.+|.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 888899999998654 665667788889999999888774
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=3.5e-09 Score=106.60 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=162.9
Q ss_pred ceeecCccccCCCCCCEEEccCCC---CCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCCCCC
Q 009835 103 LKGTISPALLKLHDLRHLDLSNNH---FGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNLFSL 179 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (524)
++..-..+|.++++|+.+.+..|. ++.. -..+|..+.+|+.+.+. +.+......+|.++.+|+.+.+..+ +..+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~-~~~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPIL-DSVTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGG-TTCSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccC-Cccceehhhhhhhhcccccccccce-eeee
Confidence 444445567788888888887653 3332 34567777777777776 3355555566777888888887643 2223
Q ss_pred CCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCchhhhcccCcccEEEccCCCC-----
Q 009835 180 GSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSSIWHFNLSTSIETLDLSDNNL----- 254 (524)
Q Consensus 180 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l----- 254 (524)
+. ..|..+.+|+.+.+..+ +..+.. .++. ..+|+.+.+..+... .... .+..+ ..++......+..
T Consensus 152 ~~-~~F~~c~~L~~i~~~~~-~~~I~~--~aF~-~~~l~~i~ip~~~~~-i~~~--af~~c-~~l~~~~~~~~~~~~~~~ 222 (394)
T 4gt6_A 152 AD-GMFSYCYSLHTVTLPDS-VTAIEE--RAFT-GTALTQIHIPAKVTR-IGTN--AFSEC-FALSTITSDSESYPAIDN 222 (394)
T ss_dssp CT-TTTTTCTTCCEEECCTT-CCEECT--TTTT-TCCCSEEEECTTCCE-ECTT--TTTTC-TTCCEEEECCSSSCBSSS
T ss_pred cc-cceecccccccccccce-eeEecc--cccc-ccceeEEEECCcccc-cccc--hhhhc-cccceecccccccccccc
Confidence 32 45667777777777554 222211 1232 234555555432110 0000 01111 2222222111100
Q ss_pred ----------------------CC-------CCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccc
Q 009835 255 ----------------------PS-------SSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELE 305 (524)
Q Consensus 255 ----------------------~~-------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 305 (524)
.. ..+....+..+..|+.+.+.++... .....|.++++|+.+.+.. .++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~ 300 (394)
T 4gt6_A 223 VLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT 300 (394)
T ss_dssp CEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC
T ss_pred eeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc
Confidence 00 1222344555568888888765443 4556788899999999964 456
Q ss_pred cccchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccc
Q 009835 306 GGIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGT 384 (524)
Q Consensus 306 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 384 (524)
.....+|.++.+|+.++|..+ ++.+...+|..+. +|+.+.+..+ ++.+... |.++++|+.+++.++...
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~------~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-- 370 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE------QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-- 370 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT------TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC------CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--
Confidence 566678999999999999865 6666667787765 8999999765 5544444 999999999999988643
Q ss_pred cchhhhcCCCCCEEECcCCcC
Q 009835 385 IDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 385 ~p~~~~~l~~L~~L~l~~N~l 405 (524)
...+.....|+.+.+..|.+
T Consensus 371 -~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 -WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -HHTCBCCCCC----------
T ss_pred -hhhhhccCCCCEEEeCCCCE
Confidence 24567778899888876654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.2e-09 Score=108.02 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=78.7
Q ss_pred CcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhh--cccccceEeecC--cccccc-----cchhh
Q 009835 242 TSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQ--LMVSLRFLYLTS--NELEGG-----IPKFF 312 (524)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~-----~p~~l 312 (524)
++|+.|++++|.- ..+++ + . .++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+
T Consensus 172 P~L~~L~L~g~~~--l~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 172 PLLNNLKIKGTNN--LSIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TTCCEEEEECCBT--CBCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCcEEEEeCCCC--ceecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 5666666665521 12222 1 2 23677777776666544333443 567777777642 111111 11122
Q ss_pred --cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCC----CC-CCCCCCCcEEEccCCcCcccc
Q 009835 313 --GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPL----PD-LGGFSSLKILVLGENRLNGTI 385 (524)
Q Consensus 313 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~-~~~l~~L~~L~Ls~N~l~~~~ 385 (524)
..+++|++|+|++|.+.+..+..+...+ .+++|++|+|+.|.+++.. +. +..+++|+.|+|++|.++...
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 2467788888877777655444444321 2346666666666665431 11 244566666666666665433
Q ss_pred chhhhc-CCCCCEEECcCCc
Q 009835 386 DKSLSQ-LLKLESLSLGRNS 404 (524)
Q Consensus 386 p~~~~~-l~~L~~L~l~~N~ 404 (524)
-..+.. + ...+++++|+
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 2345555554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=2.8e-09 Score=105.39 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=98.8
Q ss_pred hhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhc--CCCCCCEEEccC--CCCC-CchhHHH
Q 009835 262 WLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG--KMCSLNRLCLPY--NKLS-GDLSEMI 336 (524)
Q Consensus 262 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~--n~l~-~~~~~~~ 336 (524)
.+...+|+|+.|++++|.-. .++. + .+++|+.|++..+.+.......+. .+|+|++|+|+. |... +.....+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455569999999988311 2333 3 378999999999988765555554 789999999864 2221 1112222
Q ss_pred HhccCCCCCCCccEEEcCCCCCccCCCC----CCCCCCCcEEEccCCcCccc----cchhhhcCCCCCEEECcCCcCee
Q 009835 337 QNLSGGCTMNSLEGVCLEGNDITGPLPD----LGGFSSLKILVLGENRLNGT----IDKSLSQLLKLESLSLGRNSFTG 407 (524)
Q Consensus 337 ~~l~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~ 407 (524)
..+.....+++|+.|+|++|.+++..+. ...+++|++|+|+.|.+.+. ++..+.++++|+.|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2222223467999999999998753321 24688999999999999874 34445678999999999998763
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.80 E-value=3.3e-07 Score=91.56 Aligned_cols=285 Identities=11% Similarity=0.047 Sum_probs=163.7
Q ss_pred cEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCC
Q 009835 84 HVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYL 163 (524)
Q Consensus 84 ~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 163 (524)
.++.+.+.. .++..-..+|.+|.+|+.++|..+ ++.. -..+|.++ +|+.+.+. +++......+|.+.
T Consensus 47 ~i~~v~ip~---------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~-~~l~~I~~~aF~~~ 113 (379)
T 4h09_A 47 RISEVRVNS---------GITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGM-ERVKKFGDYVFQGT 113 (379)
T ss_dssp GCSEEEECT---------TEEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEEC-TTCCEECTTTTTTC
T ss_pred CCEEEEeCC---------CccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECC-ceeeEeccceeccC
Confidence 466666665 566555667888888998888654 5543 34567666 67777776 33444444556554
Q ss_pred CCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCCchHhhhcccCCCEEEeeCCCCCCCCCCc---------
Q 009835 164 SGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSDWFQVVAKLRSLKTLVLHSCALPPINPSS--------- 234 (524)
Q Consensus 164 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------- 234 (524)
+|+.+++..+- ..++. ..|.++ +|+.+.+..+ ++... ...+..+.+++.+.+..+.........
T Consensus 114 -~L~~i~lp~~~-~~i~~-~~F~~~-~l~~~~~~~~-v~~i~--~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 114 -DLDDFEFPGAT-TEIGN-YIFYNS-SVKRIVIPKS-VTTIK--DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp -CCSEEECCTTC-CEECT-TTTTTC-CCCEEEECTT-CCEEC--SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred -CcccccCCCcc-ccccc-cccccc-eeeeeeccce-eeccc--cchhcccccccccccccccceeecccceecccccce
Confidence 78888887543 22222 334443 4555555433 22222 135566677777776554322111000
Q ss_pred -hhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhhc
Q 009835 235 -IWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFFG 313 (524)
Q Consensus 235 -~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 313 (524)
...... ..+..+.+....- .+....+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|.
T Consensus 187 ~~~~~~~-~~~~~~~~~~~~~---~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 187 LESYPAA-KTGTEFTIPSTVK---TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp EEECCTT-CCCSEEECCTTCC---EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred ecccccc-cccccccccccee---EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 000111 3333343333221 222333334446777776544 33234456667777888887665 4445556677
Q ss_pred CCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhcC
Q 009835 314 KMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQL 392 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 392 (524)
++.+|+.+.+..+ +.......|..+. +|+.+.+.++.++.+... |.++.+|+.+.|..+ ++..-..+|.++
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCS------NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCT------TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeehhcccccccc-ceecccccccccc------ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 7788888887654 4444445555544 788888877777755554 778888888888654 554555677778
Q ss_pred CCCCEEECcC
Q 009835 393 LKLESLSLGR 402 (524)
Q Consensus 393 ~~L~~L~l~~ 402 (524)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 8887776644
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=5.8e-10 Score=104.76 Aligned_cols=64 Identities=27% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCCCCEEEccCCCCCc--cCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCC
Q 009835 138 SLSRLRYLNLSCGTSLL--KVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLT 202 (524)
Q Consensus 138 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 202 (524)
++++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+.+......+..+ +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 35556666666665555 3344445555566666665555544333333333 5555555555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=2.1e-08 Score=89.37 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=67.5
Q ss_pred hhhcccccceEeecCc-ccccc----cchhhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccC
Q 009835 287 AFQLMVSLRFLYLTSN-ELEGG----IPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGP 361 (524)
Q Consensus 287 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~ 361 (524)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.+.....+...- ...++|++|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L--~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--KVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH--HHCSSCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH--HhCCCcCEEECcCCcCCHH
Confidence 3444555666666665 55422 233444556666666666666544333332210 0122566666666666542
Q ss_pred C-----CCCCCCCCCcEEEc--cCCcCccc----cchhhhcCCCCCEEECcCCcCe
Q 009835 362 L-----PDLGGFSSLKILVL--GENRLNGT----IDKSLSQLLKLESLSLGRNSFT 406 (524)
Q Consensus 362 ~-----~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 406 (524)
. ..+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 12555677888888 77887654 3345566678888888888765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=5.8e-09 Score=93.09 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=73.6
Q ss_pred ceeecCccccCCCCCCEEEccCC-CCCCCC---CccccCCCCCCCEEEccCCCCCcc----CCccccCCCCCcEEEccCC
Q 009835 103 LKGTISPALLKLHDLRHLDLSNN-HFGGSP---LPEFIGSLSRLRYLNLSCGTSLLK----VPRPFQYLSGLVYLHLENS 174 (524)
Q Consensus 103 l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~p~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n 174 (524)
+...+...+...+.|++|+|++| .+.... +...+...++|++|+|++|.+... +.+.+...++|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 33445556777888888888888 776531 334556677888888888877642 2334455567777777777
Q ss_pred CCCCCCC---chhcCCCCCCcEEEc--cCCCCCCC--CCchHhhhcccCCCEEEeeCCCC
Q 009835 175 NLFSLGS---LQWLSHLSSLRHLDL--SYINLTKS--SDWFQVVAKLRSLKTLVLHSCAL 227 (524)
Q Consensus 175 ~l~~~~~---~~~~~~l~~L~~L~L--s~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l 227 (524)
.+...+. ...+...++|++|+| ++|.+... ..+...+...++|++|++++|.+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 7663221 133445566666666 55665543 11223344445555555555543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.47 E-value=8.9e-06 Score=81.04 Aligned_cols=277 Identities=7% Similarity=0.034 Sum_probs=172.7
Q ss_pred CcEEEEEcCCCCCCCCCCCcceeecCccccCCCCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccC
Q 009835 83 GHVKVLNLRRSDDENSRGTVLKGTISPALLKLHDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQY 162 (524)
Q Consensus 83 ~~v~~L~L~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 162 (524)
..++.++|.. .++..-..+|..+ +|+.+.+..+ +... -..+|... +|+.+++..+ +.......|.+
T Consensus 69 ~~L~~I~lp~---------~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I-~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~ 134 (379)
T 4h09_A 69 YNMTKVTVAS---------TVTSIGDGAFADT-KLQSYTGMER-VKKF-GDYVFQGT-DLDDFEFPGA-TTEIGNYIFYN 134 (379)
T ss_dssp TTCCEEEECT---------TCCEECTTTTTTC-CCCEEEECTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTT
T ss_pred CCCCEEEeCC---------cceEechhhhcCC-CCceEECCce-eeEe-ccceeccC-CcccccCCCc-ccccccccccc
Confidence 3567777755 3454445567676 6888877654 4332 23455554 7999999743 44444455655
Q ss_pred CCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccCCCCCCCCC----------chHhhhcccCCCEEEeeCCCCCCCCC
Q 009835 163 LSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSYINLTKSSD----------WFQVVAKLRSLKTLVLHSCALPPINP 232 (524)
Q Consensus 163 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~~l~~l~~L~~L~L~~n~l~~~~~ 232 (524)
. +|+.+.+..+ ++.+.. ..+..+.+++.+.+..+....... ....+.....+..+.+...... ...
T Consensus 135 ~-~l~~~~~~~~-v~~i~~-~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~ 210 (379)
T 4h09_A 135 S-SVKRIVIPKS-VTTIKD-GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTA 210 (379)
T ss_dssp C-CCCEEEECTT-CCEECS-CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECT
T ss_pred c-eeeeeeccce-eecccc-chhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eee
Confidence 4 5666666543 332332 457778888888776554322110 0112333444555554433211 111
Q ss_pred CchhhhcccCcccEEEccCCCCCCCCCCchhhhccccccEEEeeccccccccchhhhcccccceEeecCcccccccchhh
Q 009835 233 SSIWHFNLSTSIETLDLSDNNLPSSSVYPWLFNLSRNIQYLNLGFNSLQGSIPEAFQLMVSLRFLYLTSNELEGGIPKFF 312 (524)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 312 (524)
..+.....|+.+.+..+- ..+....+.....|+.+.+..+ ++......+.++.+|+.+.+..+ +.......|
T Consensus 211 ---~~f~~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 211 ---YGFSYGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp ---TTTTTCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred ---cccccccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 122223788888886553 2444555555568999998765 55455567888899999998754 554556688
Q ss_pred cCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCCC-CCCCCCCcEEEccCCcCccccchhhhc
Q 009835 313 GKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLPD-LGGFSSLKILVLGENRLNGTIDKSLSQ 391 (524)
Q Consensus 313 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 391 (524)
.++++|+.+.+.++.++......|..+. +|+.+.|..+ ++.+... |.++.+|+.+.+..+ ++..-..+|.+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~------~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCV------KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCT------TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccccccceehhhhhcCCC------CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 8999999999998888877778887765 8999999765 5544444 899999999988655 55444556665
Q ss_pred CC
Q 009835 392 LL 393 (524)
Q Consensus 392 l~ 393 (524)
+.
T Consensus 355 c~ 356 (379)
T 4h09_A 355 SS 356 (379)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=1.1e-07 Score=89.22 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=39.4
Q ss_pred CCCCCCEEEccCCCCCCc--hhHHHHhccCCCCCCCccEEEcCCCCCccCC--CCCCCCCCCcEEEccCCcCccccc---
Q 009835 314 KMCSLNRLCLPYNKLSGD--LSEMIQNLSGGCTMNSLEGVCLEGNDITGPL--PDLGGFSSLKILVLGENRLNGTID--- 386 (524)
Q Consensus 314 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p--- 386 (524)
.+++|+.|+|++|.+++. ++..+..++ +|+.|+|++|++++.. ..+..+ +|++|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~------~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAP------NLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHST------TCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCC------CCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcch
Confidence 344555555555555442 223333333 5555555555554431 112223 66666777666665443
Q ss_pred ----hhhhcCCCCCEEE
Q 009835 387 ----KSLSQLLKLESLS 399 (524)
Q Consensus 387 ----~~~~~l~~L~~L~ 399 (524)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 2355667776665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.7e-06 Score=75.29 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCCEEEccCCCCCCCCCccccCCCCCCCEEEccCCC-CCccCCccccCC----CCCcEEEccCCC-CCCCCCchhcCCC
Q 009835 115 HDLRHLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGT-SLLKVPRPFQYL----SGLVYLHLENSN-LFSLGSLQWLSHL 188 (524)
Q Consensus 115 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~l 188 (524)
..|++||++++.+++. --..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. +++.+ ...+..+
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence 4677777777777665 33445667777777777664 443322333433 246666666553 43221 2334445
Q ss_pred CCCcEEEccCC
Q 009835 189 SSLRHLDLSYI 199 (524)
Q Consensus 189 ~~L~~L~Ls~n 199 (524)
++|++|+++++
T Consensus 139 ~~L~~L~L~~c 149 (176)
T 3e4g_A 139 RNLKYLFLSDL 149 (176)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEECCCC
Confidence 55555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=3e-06 Score=73.77 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=6.0
Q ss_pred CCCCCcEEEccCC
Q 009835 367 GFSSLKILVLGEN 379 (524)
Q Consensus 367 ~l~~L~~L~Ls~N 379 (524)
.+++|+.|+|+++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.71 E-value=2.4e-05 Score=69.37 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=45.4
Q ss_pred hhcCCCCCCEEEccCCCCCCchhHHHHhccCCCCCCCccEEEcCCCCCccCCC-----CCCCCCCCcEEEccCC---cCc
Q 009835 311 FFGKMCSLNRLCLPYNKLSGDLSEMIQNLSGGCTMNSLEGVCLEGNDITGPLP-----DLGGFSSLKILVLGEN---RLN 382 (524)
Q Consensus 311 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~~l~~L~~L~Ls~N---~l~ 382 (524)
.+..-+.|+.|+|++|.+.+.....++..- ...+.|++|+|+.|.|+.... .+..-+.|++|+|++| .+.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL--~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELI--ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHH--HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHH--hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 344444555555555555433322222110 011245555555555543211 1444556777777654 333
Q ss_pred c----ccchhhhcCCCCCEEECcCCcC
Q 009835 383 G----TIDKSLSQLLKLESLSLGRNSF 405 (524)
Q Consensus 383 ~----~~p~~~~~l~~L~~L~l~~N~l 405 (524)
. .+...+...+.|+.|+++.|..
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2 1344566677888888876653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=5.9e-05 Score=66.87 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred cccEEEeecc-ccccc----cchhhhcccccceEeecCccccc----ccchhhcCCCCCCEEEccCCCCCCchhHHHHhc
Q 009835 269 NIQYLNLGFN-SLQGS----IPEAFQLMVSLRFLYLTSNELEG----GIPKFFGKMCSLNRLCLPYNKLSGDLSEMIQNL 339 (524)
Q Consensus 269 ~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 339 (524)
.|++|+|++| .+... +.+.+..-+.|+.|+|++|.+.. .+...+...+.|++|+|++|.|++.....+...
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5566666553 44422 23334445566666666666653 233444455667777777777765555444432
Q ss_pred cCCCCCCCccEEEcCCCC---CccC----CC-CCCCCCCCcEEEccCCcCc
Q 009835 340 SGGCTMNSLEGVCLEGND---ITGP----LP-DLGGFSSLKILVLGENRLN 382 (524)
Q Consensus 340 ~~~~~~~~L~~L~Ls~n~---l~~~----~~-~~~~l~~L~~L~Ls~N~l~ 382 (524)
+...+.|++|+|++|. +... +. .+..-++|+.|+++.|.+.
T Consensus 122 --L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 122 --TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp --TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred --HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1233457777776542 2221 11 1445567778888766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.0015 Score=53.81 Aligned_cols=60 Identities=22% Similarity=0.127 Sum_probs=47.0
Q ss_pred cEEEcCCCCCc--cCCCCCCCCCCCcEEEccCCcCccccchhhhcCCCCCEEECcCCcCeeeCC
Q 009835 349 EGVCLEGNDIT--GPLPDLGGFSSLKILVLGENRLNGTIDKSLSQLLKLESLSLGRNSFTGKIP 410 (524)
Q Consensus 349 ~~L~Ls~n~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 410 (524)
..++.+++.++ .++..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 46777777776 443332 2468999999999997777788899999999999999987665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0061 Score=50.15 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=26.1
Q ss_pred EEEccCCCCCCCCCccccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEccCCCC
Q 009835 119 HLDLSNNHFGGSPLPEFIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLENSNL 176 (524)
Q Consensus 119 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (524)
.++.+++.++...+|..+. ++|++|+|++|.++...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554101343221 2455555555555544444455555555555555443
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.59 E-value=0.2 Score=31.80 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=15.0
Q ss_pred eehhhHHHHHHHHHHHHhhhhcccccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSWR 494 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
++.+++.|+++++++++++++|.||++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 555556556665555555555555443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=88.95 E-value=0.2 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=14.3
Q ss_pred eehhhHHHHHHHHHHHHhhhhcccccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSWR 494 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
++.+++.|+++++++++++++|.||++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 455555555555555555555555443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=85.91 E-value=0.27 Score=31.09 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=13.4
Q ss_pred eehhhHHHHHHHHHHHHhhhhccccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSW 493 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
.+++.++|+++++++.+++++|.||+
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhheehh
Confidence 45556666554444444545554444
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=81.47 E-value=0.52 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.467 Sum_probs=19.4
Q ss_pred eehhhHHHHHHHHHHHHhhhhcccccch
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNRSWRH 495 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
..+..++|+++++..+.+.|+|+|.+|+
T Consensus 8 malt~i~gl~vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEEEccccc
Confidence 4455677777777777788888775553
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=78.31 E-value=1.2 Score=27.34 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=10.7
Q ss_pred eehhhHHHHHHHHHHHHhh
Q 009835 468 FYVGLILGFFVGFWGVCGT 486 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (524)
.++++++|.++++.++++.
T Consensus 12 aIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHH
Confidence 4566677666555444433
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=72.30 E-value=2.3 Score=26.42 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=9.5
Q ss_pred eehhhHHHHHHHHHHHHhhhhccc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
+..++++|+++++.+++++++++|
T Consensus 15 I~~~vv~Gv~ll~~iv~~~~~~~r 38 (41)
T 2k9y_A 15 VIGGVAVGVVLLLVLAGVGFFIHR 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred EEeehhHHHHHHHHHHHHheeEee
Confidence 344444444443323333334443
No 171
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=72.22 E-value=0.96 Score=26.98 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHhhhhcccc
Q 009835 470 VGLILGFFVGFWGVCGTLMLNRS 492 (524)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
++.++|+++++++.+++.+|.||
T Consensus 11 aagVvglll~vii~l~~~~~iRR 33 (35)
T 1iij_A 11 IATVVGVLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhheEEee
Confidence 33344444444444444444443
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.21 E-value=15 Score=28.01 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=14.5
Q ss_pred ccCCCCCCCEEEccCCCCCccCCccccCCCCCcEEEcc
Q 009835 135 FIGSLSRLRYLNLSCGTSLLKVPRPFQYLSGLVYLHLE 172 (524)
Q Consensus 135 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 172 (524)
+|.++.+|+.+.|- ..++.+-..+|.++.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP-~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQ-PNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEEC-TTSSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC-CchheEcHHHHhccCCccEEEEc
Confidence 34444444444443 12222333334444444444443
No 173
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=51.12 E-value=9.2 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.129 Sum_probs=13.9
Q ss_pred eehhhHHHHHHHHHHHHhhhhcc
Q 009835 468 FYVGLILGFFVGFWGVCGTLMLN 490 (524)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~ 490 (524)
.+++++++-+++.+++...+||.
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeEeHHHHHHHHHHHHHHhhe
Confidence 45666776666666555555543
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.48 E-value=32 Score=26.05 Aligned_cols=45 Identities=13% Similarity=-0.029 Sum_probs=24.7
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCCchhcCCCCCCcEEEccC
Q 009835 152 SLLKVPRPFQYLSGLVYLHLENSNLFSLGSLQWLSHLSSLRHLDLSY 198 (524)
Q Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 198 (524)
++.+-..+|.++.+|+.+.|-.+ ++.++. ..|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcC
Confidence 34444456666677776666543 333333 4456666666665544
No 175
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=29.76 E-value=29 Score=23.80 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 009835 473 ILGFFVGFWG 482 (524)
Q Consensus 473 ~~~~~~~~~~ 482 (524)
++|.++++++
T Consensus 13 vlGg~~~lll 22 (70)
T 2klu_A 13 VLGGVAGLLL 22 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 4444443333
No 176
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=30.48 E-value=16 Score=22.75 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=10.4
Q ss_pred ehhhH-HHHHHHHHHHHhhhhccc
Q 009835 469 YVGLI-LGFFVGFWGVCGTLMLNR 491 (524)
Q Consensus 469 ~~~~~-~~~~~~~~~~~~~~~~~~ 491 (524)
++++. +|+.+..++++++++.+|
T Consensus 19 ~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 19 IIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 34444 444444444555544443
Done!