Query 009836
Match_columns 524
No_of_seqs 330 out of 2369
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 17:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0717 Molecular chaperone (D 100.0 1.6E-68 3.4E-73 556.1 26.0 412 4-523 6-490 (508)
2 COG0484 DnaJ DnaJ-class molecu 99.9 1E-22 2.2E-27 212.3 8.8 73 5-81 3-75 (371)
3 KOG0713 Molecular chaperone (D 99.9 5.2E-22 1.1E-26 202.9 8.6 95 4-102 14-108 (336)
4 KOG0712 Molecular chaperone (D 99.8 2.1E-19 4.6E-24 185.3 8.7 76 5-87 3-78 (337)
5 COG5269 ZUO1 Ribosome-associat 99.8 7.1E-19 1.5E-23 174.8 11.0 161 5-167 42-245 (379)
6 PRK14296 chaperone protein Dna 99.8 3.6E-19 7.8E-24 187.5 9.0 72 5-81 3-74 (372)
7 PRK14288 chaperone protein Dna 99.8 3.2E-19 6.8E-24 187.7 7.2 73 5-81 2-74 (369)
8 PRK14286 chaperone protein Dna 99.7 2.7E-18 5.8E-23 180.9 7.9 73 5-81 3-75 (372)
9 PTZ00341 Ring-infected erythro 99.7 5.2E-18 1.1E-22 191.5 9.1 98 4-111 571-668 (1136)
10 PRK14287 chaperone protein Dna 99.7 3.8E-18 8.1E-23 179.7 7.5 72 5-81 3-74 (371)
11 PRK14298 chaperone protein Dna 99.7 7E-18 1.5E-22 178.1 7.9 73 4-81 3-75 (377)
12 PTZ00037 DnaJ_C chaperone prot 99.7 5.5E-18 1.2E-22 181.1 6.4 69 5-81 27-95 (421)
13 PRK14282 chaperone protein Dna 99.7 1.2E-17 2.7E-22 175.6 8.7 73 5-80 3-75 (369)
14 PRK14276 chaperone protein Dna 99.7 8.9E-18 1.9E-22 177.4 7.1 72 5-81 3-74 (380)
15 PRK14297 chaperone protein Dna 99.7 1.4E-17 3E-22 175.9 7.9 73 5-81 3-75 (380)
16 PRK14277 chaperone protein Dna 99.7 1.5E-17 3.3E-22 175.9 8.1 73 5-81 4-76 (386)
17 PRK14285 chaperone protein Dna 99.7 1.5E-17 3.3E-22 174.8 7.6 73 5-81 2-74 (365)
18 PRK14278 chaperone protein Dna 99.7 1.8E-17 3.8E-22 175.1 7.7 68 6-78 3-70 (378)
19 PRK14294 chaperone protein Dna 99.7 2.2E-17 4.8E-22 173.6 7.8 73 5-81 3-75 (366)
20 PRK14280 chaperone protein Dna 99.7 2.1E-17 4.4E-22 174.4 7.3 72 5-81 3-74 (376)
21 PRK10767 chaperone protein Dna 99.7 3.5E-17 7.6E-22 172.3 8.5 73 5-81 3-75 (371)
22 PRK14279 chaperone protein Dna 99.7 2.7E-17 5.9E-22 174.4 7.1 70 5-78 8-77 (392)
23 PRK14283 chaperone protein Dna 99.7 3.4E-17 7.5E-22 172.8 7.1 74 1-80 1-74 (378)
24 PRK14301 chaperone protein Dna 99.7 6E-17 1.3E-21 170.8 8.5 73 5-81 3-75 (373)
25 PRK14299 chaperone protein Dna 99.7 1E-16 2.3E-21 163.7 9.2 70 5-79 3-72 (291)
26 KOG0718 Molecular chaperone (D 99.7 4.7E-17 1E-21 171.6 6.1 77 4-81 7-83 (546)
27 PRK14295 chaperone protein Dna 99.7 1.1E-16 2.4E-21 169.7 8.9 72 5-80 8-83 (389)
28 PRK14290 chaperone protein Dna 99.7 9.5E-17 2.1E-21 168.7 8.0 72 6-80 3-74 (365)
29 PRK14291 chaperone protein Dna 99.7 9.6E-17 2.1E-21 169.7 8.0 71 5-80 2-72 (382)
30 PRK14281 chaperone protein Dna 99.7 9.6E-17 2.1E-21 170.5 7.7 73 5-81 2-74 (397)
31 PRK14284 chaperone protein Dna 99.7 1.3E-16 2.8E-21 169.2 8.6 72 6-81 1-72 (391)
32 TIGR02349 DnaJ_bact chaperone 99.7 1.2E-16 2.7E-21 167.0 7.0 70 7-81 1-70 (354)
33 PRK14289 chaperone protein Dna 99.6 2.5E-16 5.3E-21 166.7 8.4 73 5-81 4-76 (386)
34 PF00226 DnaJ: DnaJ domain; I 99.6 2.3E-16 4.9E-21 125.4 6.0 64 7-73 1-64 (64)
35 PRK14300 chaperone protein Dna 99.6 2.1E-16 4.5E-21 166.6 6.4 71 6-81 3-73 (372)
36 KOG0691 Molecular chaperone (D 99.6 4.1E-16 8.8E-21 159.3 7.0 72 5-80 4-75 (296)
37 PRK14292 chaperone protein Dna 99.6 3.9E-16 8.6E-21 164.3 7.1 69 6-79 2-70 (371)
38 PRK14293 chaperone protein Dna 99.6 4.8E-16 1E-20 163.9 6.6 72 5-81 2-73 (374)
39 KOG0716 Molecular chaperone (D 99.6 7E-16 1.5E-20 154.0 6.0 73 5-81 30-102 (279)
40 KOG0719 Molecular chaperone (D 99.6 7.3E-16 1.6E-20 150.9 5.9 72 4-77 12-83 (264)
41 PRK10266 curved DNA-binding pr 99.6 1.2E-15 2.6E-20 156.9 6.5 68 5-77 3-70 (306)
42 KOG0715 Molecular chaperone (D 99.6 2.6E-15 5.6E-20 153.5 7.3 70 5-79 42-111 (288)
43 KOG0624 dsRNA-activated protei 99.5 6.1E-15 1.3E-19 151.8 7.3 106 3-113 391-496 (504)
44 smart00271 DnaJ DnaJ molecular 99.5 1.4E-14 3E-19 113.2 6.9 59 6-67 1-59 (60)
45 COG2214 CbpA DnaJ-class molecu 99.5 1.6E-14 3.4E-19 135.9 6.9 73 1-76 1-73 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 3.8E-14 8.2E-19 108.8 6.7 55 7-65 1-55 (55)
47 TIGR03835 termin_org_DnaJ term 99.5 2.5E-14 5.4E-19 159.1 5.9 70 6-80 2-71 (871)
48 PHA03102 Small T antigen; Revi 99.4 8.2E-14 1.8E-18 130.3 4.6 66 6-79 5-72 (153)
49 PRK01356 hscB co-chaperone Hsc 99.4 3.4E-13 7.3E-18 127.9 6.4 71 6-77 2-74 (166)
50 PRK05014 hscB co-chaperone Hsc 99.4 6.5E-13 1.4E-17 126.5 7.2 71 6-76 1-74 (171)
51 PRK03578 hscB co-chaperone Hsc 99.4 9.9E-13 2.1E-17 125.8 7.6 76 1-76 1-79 (176)
52 KOG0721 Molecular chaperone (D 99.4 9.3E-13 2E-17 128.2 6.6 71 4-78 97-167 (230)
53 PRK00294 hscB co-chaperone Hsc 99.3 6.8E-12 1.5E-16 119.8 8.0 73 5-77 3-78 (173)
54 KOG0550 Molecular chaperone (D 99.3 2.9E-12 6.4E-17 134.6 5.9 71 3-76 370-440 (486)
55 KOG0720 Molecular chaperone (D 99.2 5.7E-12 1.2E-16 133.5 5.5 67 5-76 234-300 (490)
56 KOG0714 Molecular chaperone (D 99.2 4.9E-12 1.1E-16 124.9 4.7 74 5-81 2-75 (306)
57 PRK09430 djlA Dna-J like membr 99.1 5.9E-11 1.3E-15 120.4 6.4 60 6-65 200-262 (267)
58 KOG0722 Molecular chaperone (D 99.1 4.4E-11 9.6E-16 118.9 3.0 68 4-76 31-98 (329)
59 PTZ00100 DnaJ chaperone protei 99.0 1.9E-10 4.1E-15 103.1 4.5 52 5-64 64-115 (116)
60 KOG1150 Predicted molecular ch 99.0 1.3E-08 2.9E-13 98.4 15.2 67 5-74 52-118 (250)
61 PRK01773 hscB co-chaperone Hsc 98.9 1.4E-09 3E-14 104.0 7.0 70 6-75 2-74 (173)
62 PHA02624 large T antigen; Prov 98.9 5.9E-10 1.3E-14 123.3 4.9 60 5-72 10-71 (647)
63 COG5407 SEC63 Preprotein trans 98.8 4.3E-09 9.3E-14 111.6 5.1 73 5-77 97-170 (610)
64 TIGR00714 hscB Fe-S protein as 98.8 1.3E-08 2.9E-13 95.8 6.9 60 18-77 3-63 (157)
65 PF12171 zf-C2H2_jaz: Zinc-fin 98.5 5.6E-08 1.2E-12 65.4 2.0 26 224-249 2-27 (27)
66 smart00451 ZnF_U1 U1-like zinc 98.1 1.3E-06 2.9E-11 61.4 2.4 33 222-254 2-34 (35)
67 PF12874 zf-met: Zinc-finger o 98.0 2.8E-06 6.1E-11 55.6 2.1 25 224-248 1-25 (25)
68 KOG1789 Endocytosis protein RM 97.8 2.1E-05 4.5E-10 90.6 5.5 51 7-64 1282-1336(2235)
69 KOG0568 Molecular chaperone (D 97.8 2.5E-05 5.4E-10 77.5 4.7 55 7-66 48-103 (342)
70 KOG3408 U1-like Zn-finger-cont 97.6 2.1E-05 4.5E-10 70.9 1.8 36 221-256 55-90 (129)
71 KOG0723 Molecular chaperone (D 97.2 0.00053 1.2E-08 60.8 4.6 48 11-66 61-108 (112)
72 KOG2785 C2H2-type Zn-finger pr 97.1 0.00036 7.9E-09 73.6 3.2 39 219-257 64-102 (390)
73 COG5112 UFD2 U1-like Zn-finger 96.6 0.0011 2.4E-08 58.7 2.2 38 221-258 53-90 (126)
74 PF06220 zf-U1: U1 zinc finger 96.5 0.0019 4E-08 47.3 2.5 32 223-254 3-36 (38)
75 KOG3192 Mitochondrial J-type c 96.5 0.0027 5.8E-08 60.0 4.1 71 5-75 7-80 (168)
76 KOG0431 Auxilin-like protein a 96.1 0.0065 1.4E-07 66.5 5.1 50 13-62 395-447 (453)
77 COG1076 DjlA DnaJ-domain-conta 95.6 0.0095 2.1E-07 57.0 3.3 58 6-63 113-173 (174)
78 PF00096 zf-C2H2: Zinc finger, 95.5 0.0087 1.9E-07 38.1 1.8 22 224-245 1-22 (23)
79 KOG0724 Zuotin and related mol 95.4 0.075 1.6E-06 55.5 9.3 141 17-157 3-188 (335)
80 PLN02748 tRNA dimethylallyltra 95.2 0.014 3E-07 64.2 3.5 36 222-257 417-453 (468)
81 COG1076 DjlA DnaJ-domain-conta 94.9 0.018 3.8E-07 55.2 2.8 69 7-75 2-73 (174)
82 KOG4727 U1-like Zn-finger prot 94.7 0.019 4.1E-07 55.0 2.2 34 221-254 73-106 (193)
83 PF13894 zf-C2H2_4: C2H2-type 94.3 0.027 5.8E-07 35.4 1.6 22 224-245 1-22 (24)
84 COG5188 PRP9 Splicing factor 3 94.0 0.035 7.5E-07 58.5 2.7 37 221-257 236-272 (470)
85 PF13912 zf-C2H2_6: C2H2-type 94.0 0.031 6.7E-07 37.0 1.5 23 223-245 1-23 (27)
86 PF12756 zf-C2H2_2: C2H2 type 92.0 0.051 1.1E-06 45.6 0.4 31 223-253 50-80 (100)
87 KOG3032 Uncharacterized conser 91.7 0.15 3.3E-06 51.1 3.3 36 221-257 33-68 (264)
88 smart00355 ZnF_C2H2 zinc finge 90.9 0.18 3.8E-06 31.7 2.0 21 224-244 1-21 (26)
89 PF12756 zf-C2H2_2: C2H2 type 90.4 0.091 2E-06 44.0 0.3 30 493-522 50-79 (100)
90 KOG2837 Protein containing a U 88.7 0.13 2.7E-06 52.7 -0.1 34 223-256 25-58 (309)
91 PF00096 zf-C2H2: Zinc finger, 86.9 0.27 5.9E-06 31.1 0.7 20 495-514 2-21 (23)
92 PF07535 zf-DBF: DBF zinc fing 86.7 0.4 8.6E-06 37.2 1.6 27 223-252 5-31 (49)
93 PHA02768 hypothetical protein; 86.2 0.42 9.1E-06 38.0 1.5 25 223-249 5-29 (55)
94 PF13894 zf-C2H2_4: C2H2-type 85.0 0.39 8.4E-06 29.9 0.7 20 495-514 2-21 (24)
95 smart00586 ZnF_DBF Zinc finger 84.8 0.53 1.1E-05 36.6 1.5 29 222-253 4-32 (49)
96 PF13912 zf-C2H2_6: C2H2-type 84.0 0.45 9.8E-06 31.3 0.7 20 495-514 3-22 (27)
97 PF03656 Pam16: Pam16; InterP 82.4 2.1 4.5E-05 39.5 4.6 50 9-66 61-110 (127)
98 PF12171 zf-C2H2_jaz: Zinc-fin 80.9 0.42 9.2E-06 31.8 -0.3 25 494-518 2-26 (27)
99 smart00355 ZnF_C2H2 zinc finge 79.9 0.67 1.5E-05 29.0 0.4 20 495-514 2-21 (26)
100 PF04959 ARS2: Arsenite-resist 79.9 1.8 4E-05 43.2 3.6 37 222-259 76-112 (214)
101 PHA00616 hypothetical protein 79.5 0.9 2E-05 34.5 1.0 22 224-245 2-23 (44)
102 PF12874 zf-met: Zinc-finger o 79.2 0.49 1.1E-05 30.5 -0.5 23 495-517 2-24 (25)
103 KOG3454 U1 snRNP-specific prot 78.7 2.5 5.4E-05 40.5 3.9 39 223-261 3-43 (165)
104 PF13913 zf-C2HC_2: zinc-finge 74.5 2.4 5.1E-05 28.2 1.8 21 224-245 3-23 (25)
105 KOG1029 Endocytic adaptor prot 69.1 25 0.00054 41.3 9.3 22 499-520 816-837 (1118)
106 PHA02768 hypothetical protein; 68.3 2.5 5.4E-05 33.7 1.0 24 492-515 4-27 (55)
107 KOG0227 Splicing factor 3a, su 62.2 5.6 0.00012 39.2 2.3 38 221-258 51-88 (222)
108 PF13465 zf-H2C2_2: Zinc-finge 57.9 4.2 9.2E-05 27.0 0.5 14 222-235 13-26 (26)
109 COG5246 PRP11 Splicing factor 56.8 6.5 0.00014 38.5 1.7 35 221-255 51-85 (222)
110 PHA00732 hypothetical protein 55.4 7.8 0.00017 32.8 1.8 22 224-245 2-23 (79)
111 PF14687 DUF4460: Domain of un 55.2 22 0.00048 32.1 4.8 50 17-66 5-54 (112)
112 PF13446 RPT: A repeated domai 51.3 29 0.00062 27.4 4.4 26 7-32 6-31 (62)
113 PHA00616 hypothetical protein 50.7 6.3 0.00014 30.0 0.5 20 495-514 3-22 (44)
114 smart00734 ZnF_Rad18 Rad18-lik 48.9 12 0.00026 25.1 1.6 20 224-244 2-21 (26)
115 PF10147 CR6_interact: Growth 46.9 1.9E+02 0.0042 29.2 10.3 17 149-165 175-191 (217)
116 KOG2384 Major histocompatibili 46.4 5.4 0.00012 39.5 -0.6 35 221-256 82-116 (223)
117 smart00451 ZnF_U1 U1-like zinc 46.3 6.2 0.00013 27.2 -0.2 26 493-518 3-28 (35)
118 KOG0150 Spliceosomal protein F 45.5 19 0.00041 37.9 3.1 38 222-259 9-47 (336)
119 PTZ00266 NIMA-related protein 41.4 1.4E+02 0.0031 36.5 9.9 11 226-236 563-573 (1021)
120 KOG2482 Predicted C2H2-type Zn 41.0 9.8 0.00021 40.6 0.3 32 219-250 191-222 (423)
121 KOG2893 Zn finger protein [Gen 40.0 13 0.00029 37.9 1.0 25 223-247 10-34 (341)
122 KOG3608 Zn finger proteins [Ge 39.7 10 0.00022 40.8 0.1 21 494-514 208-228 (467)
123 PTZ00448 hypothetical protein; 39.2 24 0.00052 38.1 2.8 35 223-257 314-348 (373)
124 KOG1994 Predicted RNA binding 39.0 16 0.00035 37.0 1.4 23 221-243 237-259 (268)
125 PF05605 zf-Di19: Drought indu 38.7 25 0.00054 27.1 2.2 22 223-245 2-23 (54)
126 KOG2462 C2H2-type Zn-finger pr 37.4 17 0.00036 37.8 1.3 27 221-247 159-185 (279)
127 PF04988 AKAP95: A-kinase anch 36.3 36 0.00079 32.8 3.2 36 224-259 1-36 (165)
128 KOG3623 Homeobox transcription 36.1 11 0.00023 43.9 -0.3 29 222-250 308-336 (1007)
129 PF08790 zf-LYAR: LYAR-type C2 35.8 7.9 0.00017 26.8 -0.9 19 224-243 1-19 (28)
130 PF12269 zf-CpG_bind_C: CpG bi 35.6 54 0.0012 33.4 4.5 18 222-239 83-100 (236)
131 PF11833 DUF3353: Protein of u 34.4 61 0.0013 32.0 4.6 39 15-65 1-39 (194)
132 PF14968 CCDC84: Coiled coil p 34.1 29 0.00063 37.1 2.4 33 225-260 1-33 (336)
133 COG4049 Uncharacterized protei 31.9 19 0.00042 28.9 0.6 22 223-244 17-38 (65)
134 KOG2636 Splicing factor 3a, su 31.8 9.8 0.00021 41.8 -1.5 82 221-302 247-348 (497)
135 PHA00733 hypothetical protein 31.5 32 0.00069 31.6 2.0 25 223-248 99-123 (128)
136 COG5067 DBF4 Protein kinase es 30.4 16 0.00036 39.6 -0.1 29 221-252 420-448 (468)
137 PHA00733 hypothetical protein 30.1 33 0.00071 31.5 1.8 24 222-245 72-95 (128)
138 PF14968 CCDC84: Coiled coil p 29.7 44 0.00094 35.8 2.9 68 222-289 57-130 (336)
139 KOG4722 Zn-finger protein [Gen 29.1 2.4E+02 0.0052 31.4 8.2 32 225-256 495-526 (672)
140 KOG2785 C2H2-type Zn-finger pr 29.1 41 0.00089 36.5 2.6 36 223-258 3-38 (390)
141 PF02892 zf-BED: BED zinc fing 28.2 29 0.00063 25.4 0.9 23 222-244 15-41 (45)
142 PF04423 Rad50_zn_hook: Rad50 26.3 57 0.0012 25.2 2.3 30 225-257 22-51 (54)
143 cd01396 MeCP2_MBD MeCP2, MBD1, 25.8 40 0.00087 28.4 1.5 26 221-246 26-51 (77)
144 PF13821 DUF4187: Domain of un 25.7 38 0.00083 26.8 1.3 22 222-243 26-47 (55)
145 TIGR03831 YgiT_finger YgiT-typ 25.6 28 0.0006 25.2 0.4 24 482-505 21-44 (46)
146 KOG1074 Transcriptional repres 24.9 34 0.00075 40.5 1.2 22 224-245 880-901 (958)
147 PF11931 DUF3449: Domain of un 24.8 1.3E+02 0.0029 29.8 5.1 35 222-256 100-135 (196)
148 KOG3993 Transcription factor ( 23.5 30 0.00065 38.0 0.4 27 221-247 354-380 (500)
149 PF05443 ROS_MUCR: ROS/MUCR tr 22.3 43 0.00093 31.2 1.1 23 221-246 70-92 (132)
150 PF10013 DUF2256: Uncharacteri 22.3 41 0.00088 25.5 0.7 20 492-511 7-26 (42)
151 PHA00732 hypothetical protein 21.6 42 0.00092 28.4 0.8 20 495-514 3-22 (79)
152 KOG1074 Transcriptional repres 21.2 38 0.00081 40.2 0.6 23 224-246 354-376 (958)
153 KOG2462 C2H2-type Zn-finger pr 21.1 53 0.0011 34.2 1.5 27 222-248 214-240 (279)
154 KOG0717 Molecular chaperone (D 20.7 5.2E+02 0.011 29.2 9.0 39 109-147 179-220 (508)
155 cd00122 MBD MeCP2, MBD1, MBD2, 20.4 66 0.0014 25.6 1.7 25 221-245 25-49 (62)
156 COG5189 SFP1 Putative transcri 20.4 28 0.00061 37.0 -0.6 23 221-243 396-418 (423)
No 1
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-68 Score=556.14 Aligned_cols=412 Identities=38% Similarity=0.551 Sum_probs=293.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhccC
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSD 83 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~~~ 83 (524)
.++|||+||||.++|++.+||++||+|||+||||||+ ...++|+++|+.|+.||+|||||+.|+|||+|+.+||++.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknp---d~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNP---DRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCC---ccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999983 2688999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCccccccCCCCCCCCCCC----------------------------------------------------
Q 009836 84 LNSASNCGPVPNLYSYFSNTAFSGYSDS---------------------------------------------------- 111 (524)
Q Consensus 84 ~~~~~~~~~~~dlf~ff~~~~F~gf~d~---------------------------------------------------- 111 (524)
.... +..++++|.||+.++|.||.++
T Consensus 83 ~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ye~~~~fY~~W~a 160 (508)
T KOG0717|consen 83 NSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTDYEQVVPFYQFWLA 160 (508)
T ss_pred CCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCcHHHHHHHHHHHHh
Confidence 6532 5677899999999998888655
Q ss_pred -----------------CCCcccchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHhHHHHhHHHHHHHHHHHHH
Q 009836 112 -----------------GPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEKE 174 (524)
Q Consensus 112 -----------------a~~R~~RR~mEkeNkk~r~k~rkeyn~~IR~Lve~~kkrDpRv~~~~~k~~~eeerkk~Ee~~ 174 (524)
+.+|..+|+|+++|+++|...+++||.+||.||.||++|||||+.++.++..+.++.+.++.+
T Consensus 161 fsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~r~kqe~~R 240 (508)
T KOG0717|consen 161 FSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAYRSKQEESR 240 (508)
T ss_pred hhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999777766666654444433
Q ss_pred HHHHHHHHHHH---HHhhhcchhhhhhccccCcccCCcccchHHH-HhhhccccccccccccccCHHHHHHhhhhHHHHH
Q 009836 175 RKKRLEKERME---RAKRYEEPAWARIDDEGDNEVGNEEGLEEEE-IEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 250 (524)
Q Consensus 175 rk~~~ek~r~e---ra~~~~e~~w~~~~eee~~~~~~~~~~~ee~-~e~~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~ 250 (524)
+. +...+++. +...+....|+...+.++.+....++..+.+ .+...+.+||+||+|+|+|++||+||++||||++
T Consensus 241 k~-~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNHEnSKKHke 319 (508)
T KOG0717|consen 241 KQ-QLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNHENSKKHKE 319 (508)
T ss_pred HH-HHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhhHHHHHHHH
Confidence 33 22222222 2222222334433333333222222222222 2344555999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCCCchhHHHHHHHhhhcccchhhhhcCCCCCCCCCCcccccccccccCccccccccccCCC
Q 009836 251 KVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKE 330 (524)
Q Consensus 251 ~~~~l~~~~~~e~~~~~~~~~~e~~~~~l~e~l~~~le~~~~e~ek~~~~~s~~~~~ere~~~~~~~~e~~~~dd~~~~~ 330 (524)
+|.+|+++|.+|++ +.. .+.+.+. +.+.|.. . +..+
T Consensus 320 nv~eLrqemEEEe~--------d~~----------~~qaee~---------------e~e~~se--------e---e~~~ 355 (508)
T KOG0717|consen 320 NVAELRQEMEEEEE--------DEA----------QGQAEEN---------------ELEDFSE--------E---EPED 355 (508)
T ss_pred HHHHHHHHHHHhhh--------hhh----------hhccccc---------------hhhhhhh--------h---cccc
Confidence 99999999987752 000 0001000 1122211 1 1113
Q ss_pred CCCCCchhhhHHHHHHHHhcccccccccccccccccccccccccccCCCccccccccchhhhhhhhhhcCCCCCCCCCCC
Q 009836 331 DEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKG 410 (524)
Q Consensus 331 d~~~~ed~ddE~~~l~~m~s~~k~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~r~~~k~~~~~~~~~~~ 410 (524)
+.+.+++...+..-.+-|+|+..|-+.....-...+-+.++ +.+.+..++.++++.|.++..+..|--. .+++
T Consensus 356 d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~e~~--e~d~dtae~ee~d~qk~~~~~k~~K~~~-----D~k~ 428 (508)
T KOG0717|consen 356 DPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDFEPA--EEDGDTAESEEFDQQKNKSVNKKIKPCD-----DKKD 428 (508)
T ss_pred CCCCCchhhhHhhhhhcccchhhhhhhccccccccCCCccc--ccccccccchhhccccccchhhhccccc-----cchh
Confidence 33445567788899999999999988877665555544444 5555666778889999988777655111 3444
Q ss_pred CCCCCCCCCccCCCCCCCCccccCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhcccCCCCccccccc
Q 009836 411 DRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKGNKTKTASK 490 (524)
Q Consensus 411 ~~~~~~~~~~~~~~~~n~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~k~~~kg~k~k~~~~ 490 (524)
++..++.+....+...+..++.+||+ ...
T Consensus 429 ~a~kvk~pk~~~~kd~~k~a~~~p~~---------------------------------------------------~~p 457 (508)
T KOG0717|consen 429 EAKKVKKPKGKVTKDNKKPATVAPSS---------------------------------------------------QTP 457 (508)
T ss_pred hhhhccCCCCCCCCccCCCccCCCCC---------------------------------------------------CCc
Confidence 44455533322222222223333332 122
Q ss_pred cCCchhhhcccccchhhhhhhhhcCCCCccccc
Q 009836 491 NSSNVCEKCGQEFETRNKLHKHLGDTGHASLKF 523 (524)
Q Consensus 491 ~~~~~c~~c~~~f~sr~kl~~hl~~~gh~~~k~ 523 (524)
.+-.+|.||+..|+||||||.||..||||++..
T Consensus 458 sa~~~C~tCr~~FdSRnkLF~Hlk~tgHa~~~~ 490 (508)
T KOG0717|consen 458 SALISCTTCRESFDSRNKLFAHLKKTGHARLPS 490 (508)
T ss_pred chhHhhhhhhhhccchhHHHHHhhhcCCeeccc
Confidence 245899999999999999999999999999864
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-22 Score=212.27 Aligned_cols=73 Identities=47% Similarity=0.755 Sum_probs=68.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
++|||+||||+++||.++||+|||+||++||||+| ++ .++|.++|++|++||+|||||++|+.||.++...+.
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 78999999999999999999999999999999999 32 578999999999999999999999999999987765
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.2e-22 Score=202.88 Aligned_cols=95 Identities=38% Similarity=0.615 Sum_probs=77.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhccC
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSD 83 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~~~ 83 (524)
..+|||+||||+++|+..+||+|||||||+|||||| | +.+.|.+.|+.|+.||+|||||.+|+.||.+|+.++...
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 468999999999999999999999999999999999 3 467899999999999999999999999999999888754
Q ss_pred CCCCCCCCCCCccccccCC
Q 009836 84 LNSASNCGPVPNLYSYFSN 102 (524)
Q Consensus 84 ~~~~~~~~~~~dlf~ff~~ 102 (524)
.....++....++|.+|++
T Consensus 90 ~~~~~~g~~~~~~f~~~f~ 108 (336)
T KOG0713|consen 90 NKDGEGGGGGNDIFSAFFG 108 (336)
T ss_pred ccccccCCcccchHHHhhc
Confidence 3111111111466665544
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.1e-19 Score=185.33 Aligned_cols=76 Identities=41% Similarity=0.678 Sum_probs=68.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhccCC
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL 84 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~~~~ 84 (524)
.+.||.||||+++||..+||+|||+||++|||||| |+ |.++|++|+.||+|||||.+|.+||.+++.++..+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 56799999999999999999999999999999999 32 789999999999999999999999999998886554
Q ss_pred CCC
Q 009836 85 NSA 87 (524)
Q Consensus 85 ~~~ 87 (524)
.++
T Consensus 76 ~~~ 78 (337)
T KOG0712|consen 76 GGG 78 (337)
T ss_pred CCC
Confidence 433
No 5
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.1e-19 Score=174.78 Aligned_cols=161 Identities=32% Similarity=0.454 Sum_probs=120.9
Q ss_pred CCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchh--
Q 009836 5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI-- 79 (524)
Q Consensus 5 ~~d~YevLGV~~---~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~-- 79 (524)
..|+|.+|||+. .|++.+|.+|.++.+++||||+....| .......|.+|+.||+||+|+..|..||+.....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv 119 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV 119 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhccccccccCC
Confidence 468999999977 789999999999999999999995443 3456889999999999999999999999865311
Q ss_pred -----------------hccCCCCCCCCCC-------------CCccccccCCC----CCC----CCCCCCCCcccchhh
Q 009836 80 -----------------LFSDLNSASNCGP-------------VPNLYSYFSNT----AFS----GYSDSGPNRKSRRVM 121 (524)
Q Consensus 80 -----------------l~~~~~~~~~~~~-------------~~dlf~ff~~~----~F~----gf~d~a~~R~~RR~m 121 (524)
+|......+--.| +..||.||+++ .|. .++++..+|..+|..
T Consensus 120 ppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~ 199 (379)
T COG5269 120 PPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYS 199 (379)
T ss_pred CCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccccccccchhhhcCcchhhhhhHHHH
Confidence 1111111111122 23567777652 222 234447789999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHhHHHHhHHHHHH
Q 009836 122 EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIER 167 (524)
Q Consensus 122 EkeNkk~r~k~rkeyn~~IR~Lve~~kkrDpRv~~~~~k~~~eeer 167 (524)
+..|+..|.+++...|.+|+.||+.+.++||||+-+..+.+...+.
T Consensus 200 e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fkEqeK~~k~~ 245 (379)
T COG5269 200 EAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKI 245 (379)
T ss_pred HhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999997665444333333
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.6e-19 Score=187.49 Aligned_cols=72 Identities=39% Similarity=0.536 Sum_probs=65.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
.+|||+||||+++|+..+||+|||+||++||||+|+ ...|.++|++|++||+|||||.+|+.||.++..++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-----~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-----SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 579999999999999999999999999999999982 245889999999999999999999999999876553
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.2e-19 Score=187.73 Aligned_cols=73 Identities=40% Similarity=0.635 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 47999999999999999999999999999999998 32 346899999999999999999999999999876543
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.7e-18 Score=180.91 Aligned_cols=73 Identities=42% Similarity=0.746 Sum_probs=66.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 47999999999999999999999999999999998 22 356899999999999999999999999999886654
No 9
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=5.2e-18 Score=191.50 Aligned_cols=98 Identities=26% Similarity=0.379 Sum_probs=76.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhccC
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSD 83 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~~~ 83 (524)
+.++||+||||+++||..+||+|||+||++||||++ ++ ..|...|+.|++||+|||||.+|++||.+|..++...
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~---~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~ 645 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG---NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV 645 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC---chHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCC
Confidence 467999999999999999999999999999999999 33 2478899999999999999999999999987765432
Q ss_pred CCCCCCCCCCCccccccCCCCCCCCCCC
Q 009836 84 LNSASNCGPVPNLYSYFSNTAFSGYSDS 111 (524)
Q Consensus 84 ~~~~~~~~~~~dlf~ff~~~~F~gf~d~ 111 (524)
.. ..|. -||..|++..|..|.+.
T Consensus 646 ~~----iDP~-~FfmlFgse~F~dYiG~ 668 (1136)
T PTZ00341 646 NF----IHPS-IFYLLASLEKFADFTGS 668 (1136)
T ss_pred Cc----cCHH-HHHHHhhhHHHHHhcCC
Confidence 11 1222 24444555556555543
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.8e-18 Score=179.74 Aligned_cols=72 Identities=40% Similarity=0.661 Sum_probs=65.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||+|+ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~ 74 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-----APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN 74 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence 579999999999999999999999999999999982 246889999999999999999999999999876543
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7e-18 Score=178.06 Aligned_cols=73 Identities=41% Similarity=0.691 Sum_probs=66.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..+|||+||||+++|+.++||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-----EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-----ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 4579999999999999999999999999999999982 245789999999999999999999999999876543
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.71 E-value=5.5e-18 Score=181.11 Aligned_cols=69 Identities=51% Similarity=0.807 Sum_probs=63.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||..+||+|||+||++||||++ + ..+.|+.|++||+|||||.+|++||.++..++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c------hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 57999999999999999999999999999999998 2 147999999999999999999999999876554
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=175.63 Aligned_cols=73 Identities=42% Similarity=0.702 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l 80 (524)
..|||+||||+++||.++||+|||+||++||||++ ++ ....|.++|++|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 57999999999999999999999999999999998 32 234689999999999999999999999999887554
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.9e-18 Score=177.39 Aligned_cols=72 Identities=38% Similarity=0.591 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-----EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 479999999999999999999999999999999983 235789999999999999999999999999876654
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=175.87 Aligned_cols=73 Identities=45% Similarity=0.749 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++|+.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 47999999999999999999999999999999998 32 356889999999999999999999999999876553
No 16
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=175.91 Aligned_cols=73 Identities=42% Similarity=0.730 Sum_probs=66.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999998 32 346889999999999999999999999999876543
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=174.82 Aligned_cols=73 Identities=47% Similarity=0.717 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|++|++||+||+||.+|..||.++..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 47999999999999999999999999999999998 32 356889999999999999999999999999876553
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=175.07 Aligned_cols=68 Identities=41% Similarity=0.646 Sum_probs=63.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcch
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~ 78 (524)
+|||+||||+++|+.++||+|||+||++||||++ + ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 7999999999999999999999999999999999 2 356889999999999999999999999998865
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=173.60 Aligned_cols=73 Identities=45% Similarity=0.767 Sum_probs=66.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++|+..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 68999999999999999999999999999999998 32 346889999999999999999999999999876553
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.1e-17 Score=174.43 Aligned_cols=72 Identities=44% Similarity=0.637 Sum_probs=65.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++|+..+||+|||+||++||||+++. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-----EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 4799999999999999999999999999999999832 35889999999999999999999999999876554
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.5e-17 Score=172.25 Aligned_cols=73 Identities=48% Similarity=0.786 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.+.|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 57999999999999999999999999999999998 32 345889999999999999999999999999876543
No 22
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=174.40 Aligned_cols=70 Identities=37% Similarity=0.657 Sum_probs=64.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcch
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~ 78 (524)
.+|||+||||+++|+..+||+|||+||++||||++ ++ .+.|.++|+.|++||+|||||.+|+.||.++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 47999999999999999999999999999999998 32 356899999999999999999999999999863
No 23
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.4e-17 Score=172.80 Aligned_cols=74 Identities=43% Similarity=0.652 Sum_probs=66.9
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhh
Q 009836 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (524)
Q Consensus 1 M~s~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l 80 (524)
|+ ...|||+||||+++||..+||+|||+||++||||+|+ . ..|.++|++|++||+||+||.+|++||.++..++
T Consensus 1 ~~-~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 1 MA-EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE--E---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred CC-CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 44 3689999999999999999999999999999999982 2 4689999999999999999999999999987654
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6e-17 Score=170.77 Aligned_cols=73 Identities=45% Similarity=0.716 Sum_probs=66.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 57999999999999999999999999999999998 32 356889999999999999999999999999876553
No 25
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1e-16 Score=163.72 Aligned_cols=70 Identities=40% Similarity=0.646 Sum_probs=64.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~ 79 (524)
..|||+||||+++||.++||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 579999999999999999999999999999999982 2458899999999999999999999999988754
No 26
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.7e-17 Score=171.60 Aligned_cols=77 Identities=42% Similarity=0.634 Sum_probs=70.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
+..+||.+|+|+++||.++|++|||++++.|||||+..|. ....|++.|+.|+.||+|||||++|++||.+|.++|.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd-~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD-QKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4568999999999999999999999999999999995443 5667999999999999999999999999999998875
No 27
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.1e-16 Score=169.69 Aligned_cols=72 Identities=43% Similarity=0.677 Sum_probs=64.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhh----hcchhh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQIL 80 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~----~~~~~l 80 (524)
..|||+||||+++||..+||+|||+||++||||+++ + ...|.++|+.|++||+||+||.+|+.||. ++..++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~--~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANK--G--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCC--C--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 359999999999999999999999999999999982 2 34689999999999999999999999998 776544
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.5e-17 Score=168.75 Aligned_cols=72 Identities=38% Similarity=0.714 Sum_probs=65.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhh
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l 80 (524)
.|||+||||+++|+..+||+|||+||++||||++ +. ....|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 7999999999999999999999999999999998 32 234689999999999999999999999999987654
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.6e-17 Score=169.70 Aligned_cols=71 Identities=41% Similarity=0.715 Sum_probs=65.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l 80 (524)
..|||+||||+++|+.++||+|||+||++||||+|+ . ..|.++|+.|++||+|||||.+|+.||.++...+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK--N---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCC--C---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 579999999999999999999999999999999993 2 4578999999999999999999999999987654
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.6e-17 Score=170.48 Aligned_cols=73 Identities=45% Similarity=0.673 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++|+..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 37999999999999999999999999999999998 32 346889999999999999999999999999876654
No 31
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.3e-16 Score=169.20 Aligned_cols=72 Identities=44% Similarity=0.705 Sum_probs=65.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
.|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 72 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPF 72 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccc
Confidence 3899999999999999999999999999999999 32 356889999999999999999999999999876543
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.65 E-value=1.2e-16 Score=167.02 Aligned_cols=70 Identities=44% Similarity=0.714 Sum_probs=64.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
|||+||||+++|+.++||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 7999999999999999999999999999999993 245789999999999999999999999999876554
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.5e-16 Score=166.71 Aligned_cols=73 Identities=49% Similarity=0.739 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++|+.++|++|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~ 76 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG 76 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 57999999999999999999999999999999999 32 356899999999999999999999999999876543
No 34
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.64 E-value=2.3e-16 Score=125.39 Aligned_cols=64 Identities=45% Similarity=0.779 Sum_probs=59.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 009836 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD 73 (524)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD 73 (524)
|||+||||+++++..+|+++|++|++.||||++... ...+...|..|+.||++|++|..|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~---~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD---EAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST---HHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh---hhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 589999999999999999999999999999998321 2578999999999999999999999998
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.1e-16 Score=166.63 Aligned_cols=71 Identities=35% Similarity=0.590 Sum_probs=64.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
.|||+||||+++||..+||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-----AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 79999999999999999999999999999999983 134788999999999999999999999999876553
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.1e-16 Score=159.31 Aligned_cols=72 Identities=47% Similarity=0.704 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l 80 (524)
..|||.||||..+|+..+|++|||++||.|||||| |+ .+.|.+.|+.|.+||+||+||..|+.||..+..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~--dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PG--DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 68999999999999999999999999999999999 54 34599999999999999999999999999886544
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.9e-16 Score=164.31 Aligned_cols=69 Identities=42% Similarity=0.692 Sum_probs=63.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchh
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~ 79 (524)
.|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 48999999999999999999999999999999992 2468899999999999999999999999988754
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=4.8e-16 Score=163.94 Aligned_cols=72 Identities=39% Similarity=0.648 Sum_probs=65.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||+||||+++|+..+||+|||+||++||||+++. ..|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-----PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 3699999999999999999999999999999999832 34789999999999999999999999999876543
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7e-16 Score=153.99 Aligned_cols=73 Identities=49% Similarity=0.705 Sum_probs=66.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..++|.||||+++|+.++||+|||+|+++||||+++ +.++++.+|+.||.||.||+||.+|..||.++..++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~g----d~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNG----DNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCC----CCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 346999999999999999999999999999999992 2378999999999999999999999999999876554
No 40
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.3e-16 Score=150.92 Aligned_cols=72 Identities=51% Similarity=0.775 Sum_probs=66.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcc
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~ 77 (524)
...|+|+||||.++|+..+|++|||+|||+||||++ +.....+|+..|+.|+.||.||||..+|+.||..|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 356999999999999999999999999999999999 344566899999999999999999999999998875
No 41
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.59 E-value=1.2e-15 Score=156.92 Aligned_cols=68 Identities=35% Similarity=0.595 Sum_probs=62.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~ 77 (524)
..|||+||||+++|+.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-----~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-----EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 369999999999999999999999999999999982 23689999999999999999999999998764
No 42
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.6e-15 Score=153.48 Aligned_cols=70 Identities=41% Similarity=0.628 Sum_probs=64.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~ 79 (524)
..|||+||||+++|+..|||+||++||++||||.+. ...|...|+.|..||+||+|+.+|..||..+...
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~-----~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNK-----DKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-----CcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 448999999999999999999999999999999993 3379999999999999999999999999987643
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.55 E-value=6.1e-15 Score=151.77 Aligned_cols=106 Identities=31% Similarity=0.597 Sum_probs=77.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhcc
Q 009836 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (524)
Q Consensus 3 s~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~~ 82 (524)
+.++|||.||||.++|+..+|.+|||+||++||||-.+. ......|...|.-|..|-+||+||.+|+.||..-. ++..
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD-PLD~ 468 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED-PLDP 468 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC-CCCh
Confidence 468999999999999999999999999999999998832 22344689999999999999999999999998543 3433
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCCCCC
Q 009836 83 DLNSASNCGPVPNLYSYFSNTAFSGYSDSGP 113 (524)
Q Consensus 83 ~~~~~~~~~~~~dlf~ff~~~~F~gf~d~a~ 113 (524)
....+++++++.. ||++..|..|++.++
T Consensus 469 Es~q~GGGg~~Hg---f~n~hgF~~F~~Gg~ 496 (504)
T KOG0624|consen 469 ESQQGGGGGPFHG---FWNEHGFNPFGGGGP 496 (504)
T ss_pred hhccCCCCCCCCC---CccccCCCCCCCCCC
Confidence 3333333344433 333334555544443
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.54 E-value=1.4e-14 Score=113.24 Aligned_cols=59 Identities=51% Similarity=0.837 Sum_probs=53.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCch
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~ 67 (524)
++||+||||+++++..+|++||++|++.||||++. +. ...+...|..|+.||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~--~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP--GD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999983 21 5678999999999999999985
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-14 Score=135.88 Aligned_cols=73 Identities=42% Similarity=0.681 Sum_probs=65.2
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhc
Q 009836 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (524)
Q Consensus 1 M~s~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~ 76 (524)
|+....+||+||||+++|+..+|++|||++|++||||+++.. .. .|.+.|..|+.||.||+||..|..||..+
T Consensus 1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~--~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD--PK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 456778999999999999999999999999999999999321 22 58999999999999999999999999863
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.50 E-value=3.8e-14 Score=108.77 Aligned_cols=55 Identities=47% Similarity=0.770 Sum_probs=50.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcC
Q 009836 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (524)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsD 65 (524)
+||+||||+++++.++|+++||+|++.||||++. +. ..+...|..|+.||+||+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc--HHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999983 21 6789999999999999986
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.48 E-value=2.5e-14 Score=159.07 Aligned_cols=70 Identities=40% Similarity=0.647 Sum_probs=63.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhh
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l 80 (524)
.|||+||||+++|+..+||+|||+|+++||||++. + ..+..+|+.|+.||+||+||.+|+.||.++..++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 68999999999999999999999999999999982 2 4678899999999999999999999999876543
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.43 E-value=8.2e-14 Score=130.33 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=59.5
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchh
Q 009836 6 RCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (524)
Q Consensus 6 ~d~YevLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~ 79 (524)
..+|+||||+++| |..+||+|||++|+++|||++ + ..+.|+.|+.||+||+|+..|..||.++...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 4589999999999 999999999999999999997 2 2469999999999999999999999987543
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=3.4e-13 Score=127.89 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcc
Q 009836 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (524)
Q Consensus 6 ~d~YevLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~ 77 (524)
.|||+||||++. ++..+|+++||+|+++||||+++.. .....+...|..|++||.||+||..|+.|+-...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~-~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL-QEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999996 7899999999999999999998421 1223456779999999999999999999986553
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=6.5e-13 Score=126.47 Aligned_cols=71 Identities=28% Similarity=0.366 Sum_probs=59.7
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhc
Q 009836 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (524)
Q Consensus 6 ~d~YevLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~ 76 (524)
.|||+||||++. ++..+|+++||+|+++||||+.+..+. ....|...|..|+.||+||+||..|+.|+-..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 379999999995 678999999999999999999843321 12247789999999999999999999998543
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=9.9e-13 Score=125.80 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=62.6
Q ss_pred CCCCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhc
Q 009836 1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (524)
Q Consensus 1 M~s~~~d~YevLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~ 76 (524)
|-+...|||+||||++. ++..+|+++||+|+++||||+++..+. ....+...+..||.||.||+||..|+.|.-..
T Consensus 1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 45678899999999995 678999999999999999999843221 11235677899999999999999999999643
No 52
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=9.3e-13 Score=128.18 Aligned_cols=71 Identities=31% Similarity=0.548 Sum_probs=63.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcch
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~ 78 (524)
..-|+|+||||++++|..+||+|||+|+++|||||++.+ ....+.|..|..||+.|+|+..|..|..+|..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 356899999999999999999999999999999999432 45678899999999999999999999988753
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=6.8e-12 Score=119.77 Aligned_cols=73 Identities=27% Similarity=0.447 Sum_probs=61.5
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcc
Q 009836 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (524)
Q Consensus 5 ~~d~YevLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~ 77 (524)
..+||++|||++. .+..+|+++||+|+++||||++...+. ....+...|..||.||.||+||..|+.|+-...
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 6789999999996 668999999999999999999843221 123477889999999999999999999996543
No 54
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.9e-12 Score=134.56 Aligned_cols=71 Identities=48% Similarity=0.820 Sum_probs=65.3
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhc
Q 009836 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (524)
Q Consensus 3 s~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~ 76 (524)
|...|||.||||..+|+..+|++|||++||.||||++ .+ +..+|...|+.|-.||.||+||.+|..||+.-
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 3567999999999999999999999999999999999 33 46789999999999999999999999999854
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.7e-12 Score=133.51 Aligned_cols=67 Identities=33% Similarity=0.543 Sum_probs=62.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~ 76 (524)
.+|+|.||||++++++++||+.||++|...||||| ..+.|.+.|+.|+.||+||+|+.+|..||...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn-----~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKN-----MIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCcc-----CChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 57899999999999999999999999999999999 35679999999999999999999999999753
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.9e-12 Score=124.87 Aligned_cols=74 Identities=42% Similarity=0.698 Sum_probs=65.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcchhhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~~l~ 81 (524)
..|||.||||.+.|+..+|++|||+||++||||++ ++. ...|...|.+|.+||+||+||.+|..||..+...+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 57899999999999999999999999999999998 443 445666999999999999999999999999874444
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.13 E-value=5.9e-11 Score=120.43 Aligned_cols=60 Identities=40% Similarity=0.632 Sum_probs=52.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCC---hHHHHHHHHHHHHHHHHhcC
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSD 65 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~---~~eA~e~F~~I~~AYevLsD 65 (524)
.++|+||||++++|.++||+|||+|+++||||++...+.+ .+.|+++|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998543332 25689999999999999985
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.4e-11 Score=118.87 Aligned_cols=68 Identities=35% Similarity=0.602 Sum_probs=61.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhc
Q 009836 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (524)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~ 76 (524)
...|.|+||||.+.++..+|.+|||+||++||||++++ +++...|..|..||++|.|...|..||-..
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 35689999999999999999999999999999999943 345699999999999999999999999654
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.03 E-value=1.9e-10 Score=103.11 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=46.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLs 64 (524)
..++|+||||+++||.++|+++||+|+++||||+. + ....|+.|++||+||.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999985 2 2468999999999995
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-08 Score=98.37 Aligned_cols=67 Identities=30% Similarity=0.462 Sum_probs=59.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS 74 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~ 74 (524)
..++|+||.|.|..+.++||+.||+|++..||||| |. +.+.|...|-.|..||.+|-|+..|..-+.
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 56899999999999999999999999999999999 32 567899999999999999999987765443
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.94 E-value=1.4e-09 Score=104.01 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=59.3
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCC-hHHHHHHHHHHHHHHHHhcCchhhhhhhhh
Q 009836 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (524)
Q Consensus 6 ~d~YevLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~~-~~eA~e~F~~I~~AYevLsDp~kR~~YD~~ 75 (524)
.|||++|||++. .+...|++.||.|...+|||+....+.. ...|.+....||.||.||.||.+|+.|=-.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 589999999995 8899999999999999999998543311 223677889999999999999999999654
No 62
>PHA02624 large T antigen; Provisional
Probab=98.94 E-value=5.9e-10 Score=123.30 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=55.3
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhh
Q 009836 5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72 (524)
Q Consensus 5 ~~d~YevLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~Y 72 (524)
..++|+||||+++| +..+||+|||++|++||||+. | +.+.|+.|+.||++|+|+..|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45799999999999 999999999999999999996 1 257899999999999999999998
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.80 E-value=4.3e-09 Score=111.64 Aligned_cols=73 Identities=26% Similarity=0.471 Sum_probs=64.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCC-CCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcc
Q 009836 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (524)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~-~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~ 77 (524)
.-|+|+||||..+++..+||++||+|++++||||.++- +....+-.+.+..|+.||..|+|...|..|=.+|.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 45899999999999999999999999999999998431 12445678999999999999999999999988765
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.77 E-value=1.3e-08 Score=95.81 Aligned_cols=60 Identities=33% Similarity=0.397 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcc
Q 009836 18 CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (524)
Q Consensus 18 As~~eIKkAYRkLalk~HPDKn~~~~~-~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~ 77 (524)
.+..+|+++||+|+++||||+.+..+. ....+...|..|+.||.||+||..|+.|.-...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 577899999999999999999743321 223478899999999999999999999997654
No 65
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.50 E-value=5.6e-08 Score=65.38 Aligned_cols=26 Identities=58% Similarity=0.957 Sum_probs=25.4
Q ss_pred cccccccccccCHHHHHHhhhhHHHH
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQSKKHK 249 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~SkKHk 249 (524)
|||++|++.|.++.+|.+|++|++|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 89999999999999999999999997
No 66
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.14 E-value=1.3e-06 Score=61.40 Aligned_cols=33 Identities=39% Similarity=0.717 Sum_probs=30.6
Q ss_pred cccccccccccccCHHHHHHhhhhHHHHHHHHH
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD 254 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~ 254 (524)
..|+|.+|++.|.+..+|.+|.+|++|+++|++
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 358999999999999999999999999999874
No 67
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.03 E-value=2.8e-06 Score=55.61 Aligned_cols=25 Identities=52% Similarity=0.991 Sum_probs=24.4
Q ss_pred cccccccccccCHHHHHHhhhhHHH
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQSKKH 248 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~SkKH 248 (524)
|+|.+|++.|.+..+|..|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 7899999999999999999999998
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.1e-05 Score=90.62 Aligned_cols=51 Identities=37% Similarity=0.516 Sum_probs=44.0
Q ss_pred CcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhc
Q 009836 7 CLYEVLGLRKE----CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (524)
Q Consensus 7 d~YevLGV~~~----As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLs 64 (524)
+-|+||.|+-+ ..++.||++|++||.+|||||| | +..++|..||+||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence 47999999762 3457899999999999999999 2 45789999999999998
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.5e-05 Score=77.53 Aligned_cols=55 Identities=33% Similarity=0.577 Sum_probs=48.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHH-HhcCc
Q 009836 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLSDP 66 (524)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYe-vLsDp 66 (524)
.||.||||..+|+.++++.||..|+..+|||.. ..+...+.|+.|.+||. ||+..
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999987 33455789999999998 88753
No 70
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=97.65 E-value=2.1e-05 Score=70.87 Aligned_cols=36 Identities=36% Similarity=0.758 Sum_probs=34.0
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 256 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~ 256 (524)
..-|||..|.+.|.+.++|+.|.+||.||+.|+.|+
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~ 90 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR 90 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence 356999999999999999999999999999999887
No 71
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00053 Score=60.76 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=42.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 009836 11 VLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (524)
Q Consensus 11 vLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp 66 (524)
||||.+.++.+.||.|+|++-+..|||+..+ .-.-..|++|+++|...
T Consensus 61 IL~v~~s~~k~KikeaHrriM~~NHPD~GGS--------PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPSLDKDKIKEAHRRIMLANHPDRGGS--------PYLASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCccccHHHHHHHHHHHHHcCCCcCCCC--------HHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999843 24556899999999753
No 72
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00036 Score=73.58 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=35.2
Q ss_pred hhccccccccccccccCHHHHHHhhhhHHHHHHHHHHHH
Q 009836 219 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (524)
Q Consensus 219 ~~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 257 (524)
+....+||.+|+|.|.|.+++.+|++|++|+.++..+.+
T Consensus 64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 345678999999999999999999999999999998775
No 73
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=96.63 E-value=0.0011 Score=58.74 Aligned_cols=38 Identities=34% Similarity=0.712 Sum_probs=35.0
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 258 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~ 258 (524)
...+||..|.+.|.|..+|..|.++|-|++.++.|+..
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev 90 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV 90 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence 35689999999999999999999999999999999864
No 74
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=96.54 E-value=0.0019 Score=47.33 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=20.0
Q ss_pred ccccccccccccC--HHHHHHhhhhHHHHHHHHH
Q 009836 223 EFYCVLCGKKFKS--EKQWTNHEQSKKHKEKVAD 254 (524)
Q Consensus 223 ~~~C~~C~K~F~s--~~~~~nH~~SkKHk~~~~~ 254 (524)
-|||..|++.|.+ ....++|+.+.+|+.+|++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 4799999999944 4466999999999999975
No 75
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0027 Score=59.98 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=55.5
Q ss_pred CCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhh
Q 009836 5 KRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (524)
Q Consensus 5 ~~d~YevLGV~~--~As~~eIKkAYRkLalk~HPDKn~~~~~-~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~ 75 (524)
..+||.++|... ...+.-+.--|.-...++|||+...+.. ....|.+....|++||.+|.||-.|+.|=..
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456999998655 4566666768999999999999643322 2235888999999999999999999999654
No 76
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.13 E-value=0.0065 Score=66.52 Aligned_cols=50 Identities=36% Similarity=0.494 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChH---HHHHHHHHHHHHHHH
Q 009836 13 GLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEV 62 (524)
Q Consensus 13 GV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~---eA~e~F~~I~~AYev 62 (524)
+|..-.+..+||++|||.+|..||||.+..|.... .|.+.|-.+++|+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34456789999999999999999999976553322 356666666666654
No 77
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0095 Score=57.04 Aligned_cols=58 Identities=34% Similarity=0.571 Sum_probs=49.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChH---HHHHHHHHHHHHHHHh
Q 009836 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEVL 63 (524)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~---eA~e~F~~I~~AYevL 63 (524)
.+.|.+||+...+....|+++||++.-.+|||+....+...+ .+...++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999855443332 5788999999999753
No 78
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.50 E-value=0.0087 Score=38.13 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=20.6
Q ss_pred cccccccccccCHHHHHHhhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~S 245 (524)
|.|..|++.|.+...|..|.+.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5799999999999999999986
No 79
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.075 Score=55.50 Aligned_cols=141 Identities=23% Similarity=0.289 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhcch--hhcc-CC---------
Q 009836 17 ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ--ILFS-DL--------- 84 (524)
Q Consensus 17 ~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp~kR~~YD~~~~~--~l~~-~~--------- 84 (524)
.++...|..+|+..++.+||++..............|++|..||.||++...|..+|.+... .+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYI 82 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhh
Confidence 46778999999999999999987210000113467799999999999996665666665410 0110 00
Q ss_pred -------CCCCCCCCCC-------------ccccc----cCCCCCCCCCCCC----CCcccchhh-----HHHhHHHHHH
Q 009836 85 -------NSASNCGPVP-------------NLYSY----FSNTAFSGYSDSG----PNRKSRRVM-----EEENKKLRKK 131 (524)
Q Consensus 85 -------~~~~~~~~~~-------------dlf~f----f~~~~F~gf~d~a----~~R~~RR~m-----EkeNkk~r~k 131 (524)
+...+..+++ .++.+ ..+..|....... .++..+|++ ...+...+..
T Consensus 83 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
T KOG0724|consen 83 GLVFDVNIRESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRR 162 (335)
T ss_pred hhHHHHhhhhccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhh
Confidence 0000000000 12222 2223333322111 356666666 3677788888
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHhH
Q 009836 132 AKREYNETVRELAAFVKKRDKRVMDM 157 (524)
Q Consensus 132 ~rkeyn~~IR~Lve~~kkrDpRv~~~ 157 (524)
........++.|+......++++.-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (335)
T KOG0724|consen 163 KGTPVTERERKLVLLALKKDGKIDWR 188 (335)
T ss_pred ccchhHHHHHHHHHhhhcccccccce
Confidence 89999999999999999999998654
No 80
>PLN02748 tRNA dimethylallyltransferase
Probab=95.25 E-value=0.014 Score=64.20 Aligned_cols=36 Identities=25% Similarity=0.840 Sum_probs=32.9
Q ss_pred cccccccccc-cccCHHHHHHhhhhHHHHHHHHHHHH
Q 009836 222 SEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRE 257 (524)
Q Consensus 222 ~~~~C~~C~K-~F~s~~~~~nH~~SkKHk~~~~~l~~ 257 (524)
.-|+|.+|++ +|..+.+|..|++|++|+++++.+++
T Consensus 417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k 453 (468)
T PLN02748 417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ 453 (468)
T ss_pred ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence 4568999998 89999999999999999999998865
No 81
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.018 Score=55.19 Aligned_cols=69 Identities=28% Similarity=0.397 Sum_probs=54.0
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCcCCCCCCh-HHHHHHHHHHHHHHHHhcCchhhhhhhhh
Q 009836 7 CLYEVLGLRKECT--TDEIRSAYKKLALQRHPDKLVQSGLSQ-AEATAQFQELVHAYEVLSDPKERAWYDSH 75 (524)
Q Consensus 7 d~YevLGV~~~As--~~eIKkAYRkLalk~HPDKn~~~~~~~-~eA~e~F~~I~~AYevLsDp~kR~~YD~~ 75 (524)
+|+.++|+++.+. ...+...|+.+.+.||||+....+... ..+...+..++.||.+|-+|..|+.|=..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4667777777553 456899999999999999985443211 23667899999999999999999999643
No 82
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=94.66 E-value=0.019 Score=54.97 Aligned_cols=34 Identities=24% Similarity=0.575 Sum_probs=31.1
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD 254 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~ 254 (524)
...|||.+|+=+|+---+|..|++.|+|..++--
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm 106 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM 106 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence 4679999999999999999999999999988763
No 83
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.31 E-value=0.027 Score=35.35 Aligned_cols=22 Identities=36% Similarity=0.922 Sum_probs=18.3
Q ss_pred cccccccccccCHHHHHHhhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~S 245 (524)
|.|..|++.|.+...|..|+.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 5799999999999999999875
No 84
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=94.04 E-value=0.035 Score=58.49 Aligned_cols=37 Identities=30% Similarity=0.607 Sum_probs=33.4
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 257 (524)
...+||+.|.+-|+..+.|..|+.+|-|.++++..+.
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 4578999999999999999999999999999886654
No 85
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.02 E-value=0.031 Score=36.97 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=21.0
Q ss_pred ccccccccccccCHHHHHHhhhh
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~S 245 (524)
+|.|..|++.|.+...|..|.++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 47899999999999999999864
No 86
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=92.05 E-value=0.051 Score=45.57 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=26.4
Q ss_pred ccccccccccccCHHHHHHhhhhHHHHHHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 253 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~ 253 (524)
.|.|.+|++.|.+..+|..|++++.|.....
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999999987654
No 87
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=0.15 Score=51.10 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=33.5
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 257 (524)
.+.+.|.+|+--.+ .+-|..|.+||+|+.+|..|+.
T Consensus 33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs 68 (264)
T KOG3032|consen 33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS 68 (264)
T ss_pred CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence 45689999999999 9999999999999999999994
No 88
>smart00355 ZnF_C2H2 zinc finger.
Probab=90.90 E-value=0.18 Score=31.74 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.6
Q ss_pred cccccccccccCHHHHHHhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQ 244 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~ 244 (524)
|.|..|++.|.+...|..|.+
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 479999999999999999987
No 89
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=90.43 E-value=0.091 Score=44.01 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=26.4
Q ss_pred CchhhhcccccchhhhhhhhhcCCCCcccc
Q 009836 493 SNVCEKCGQEFETRNKLHKHLGDTGHASLK 522 (524)
Q Consensus 493 ~~~c~~c~~~f~sr~kl~~hl~~~gh~~~k 522 (524)
.+.|..|+..|.|+..|..||...||..+.
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~ 79 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN 79 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence 689999999999999999999999998763
No 90
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=88.67 E-value=0.13 Score=52.72 Aligned_cols=34 Identities=24% Similarity=0.621 Sum_probs=31.8
Q ss_pred ccccccccccccCHHHHHHhhhhHHHHHHHHHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 256 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~ 256 (524)
-|||..|-|.|..+|.|+-|..|..|.+.+.+..
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~ 58 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFA 58 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHH
Confidence 4899999999999999999999999999988765
No 91
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=86.95 E-value=0.27 Score=31.11 Aligned_cols=20 Identities=30% Similarity=0.919 Sum_probs=18.5
Q ss_pred hhhhcccccchhhhhhhhhc
Q 009836 495 VCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~ 514 (524)
.|+.||..|.++..|-.|+.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 59999999999999999975
No 92
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=86.75 E-value=0.4 Score=37.21 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=23.6
Q ss_pred ccccccccccccCHHHHHHhhhhHHHHHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 252 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~ 252 (524)
.-||..|.-.|.+ |..|+.|.+|+.-+
T Consensus 5 ~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 5 PGYCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred CccCccccchhhh---HHHHhCCHHHHHHH
Confidence 4599999999986 88999999998655
No 93
>PHA02768 hypothetical protein; Provisional
Probab=86.21 E-value=0.42 Score=37.96 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=22.9
Q ss_pred ccccccccccccCHHHHHHhhhhHHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKHK 249 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKHk 249 (524)
.|.|..|+|.|.....|..|.++ |.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~ 29 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRK--HN 29 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHh--cC
Confidence 47999999999999999999987 65
No 94
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=85.02 E-value=0.39 Score=29.91 Aligned_cols=20 Identities=30% Similarity=0.913 Sum_probs=16.5
Q ss_pred hhhhcccccchhhhhhhhhc
Q 009836 495 VCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~ 514 (524)
.|+.||..|.++..|-.|+.
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHH
Confidence 59999999999999999984
No 95
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=84.82 E-value=0.53 Score=36.56 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.3
Q ss_pred cccccccccccccCHHHHHHhhhhHHHHHHHH
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 253 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~ 253 (524)
..-||.+|...|. -|..|+.|++|+.=+.
T Consensus 4 k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 4 KPGYCENCREKYD---DLETHLLSEKHRRFAE 32 (49)
T ss_pred CCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence 4569999999997 5788999999986544
No 96
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=84.04 E-value=0.45 Score=31.30 Aligned_cols=20 Identities=30% Similarity=0.811 Sum_probs=18.7
Q ss_pred hhhhcccccchhhhhhhhhc
Q 009836 495 VCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~ 514 (524)
.|..|+..|.+...|..|+.
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EETTTTEEESSHHHHHHHHC
T ss_pred CCCccCCccCChhHHHHHhH
Confidence 59999999999999999984
No 97
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=82.43 E-value=2.1 Score=39.51 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=36.6
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 009836 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (524)
Q Consensus 9 YevLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp 66 (524)
..||||++.++.++|.+.|.+|-...+|++.. ....-..|..|.++|...
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999872 245556788888888743
No 98
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=80.89 E-value=0.42 Score=31.82 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=21.5
Q ss_pred chhhhcccccchhhhhhhhhcCCCC
Q 009836 494 NVCEKCGQEFETRNKLHKHLGDTGH 518 (524)
Q Consensus 494 ~~c~~c~~~f~sr~kl~~hl~~~gh 518 (524)
..|+.|+..|.+.+-|-.||....|
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~H 26 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKH 26 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCC
Confidence 4699999999999999999976443
No 99
>smart00355 ZnF_C2H2 zinc finger.
Probab=79.89 E-value=0.67 Score=28.99 Aligned_cols=20 Identities=30% Similarity=0.906 Sum_probs=18.8
Q ss_pred hhhhcccccchhhhhhhhhc
Q 009836 495 VCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~ 514 (524)
.|..|+..|.+++-|..|+.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
Confidence 59999999999999999987
No 100
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=79.87 E-value=1.8 Score=43.21 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=29.5
Q ss_pred cccccccccccccCHHHHHHhhhhHHHHHHHHHHHHHh
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~ 259 (524)
.-|-|..|.|.|+-..=+..|+. +||-+.|..+++++
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev 112 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEV 112 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHH
Confidence 45999999999999999999987 57999999887654
No 101
>PHA00616 hypothetical protein
Probab=79.54 E-value=0.9 Score=34.54 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.2
Q ss_pred cccccccccccCHHHHHHhhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~S 245 (524)
|-|.-|++.|.....|..|.++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 6799999999999999999954
No 102
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=79.17 E-value=0.49 Score=30.55 Aligned_cols=23 Identities=30% Similarity=0.756 Sum_probs=20.3
Q ss_pred hhhhcccccchhhhhhhhhcCCC
Q 009836 495 VCEKCGQEFETRNKLHKHLGDTG 517 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~~~g 517 (524)
.|..|+..|-|.+-|-.||..-.
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s~~ 24 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRSKK 24 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTTHH
T ss_pred CCCCCCCCcCCHHHHHHHHCcCC
Confidence 59999999999999999997543
No 103
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=78.75 E-value=2.5 Score=40.53 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=31.3
Q ss_pred ccccccccccc--cCHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 009836 223 EFYCVLCGKKF--KSEKQWTNHEQSKKHKEKVADLRESFVD 261 (524)
Q Consensus 223 ~~~C~~C~K~F--~s~~~~~nH~~SkKHk~~~~~l~~~~~~ 261 (524)
-|||..|+..- -|...-+.|+..+||+.+|+-.=+++.+
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~e 43 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWME 43 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 38999999644 3567789999999999999987666543
No 104
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=74.52 E-value=2.4 Score=28.20 Aligned_cols=21 Identities=33% Similarity=0.828 Sum_probs=17.9
Q ss_pred cccccccccccCHHHHHHhhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~S 245 (524)
..|..|++.| ....|..|++.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4799999999 78889999753
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.08 E-value=25 Score=41.34 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=11.3
Q ss_pred cccccchhhhhhhhhcCCCCcc
Q 009836 499 CGQEFETRNKLHKHLGDTGHAS 520 (524)
Q Consensus 499 c~~~f~sr~kl~~hl~~~gh~~ 520 (524)
|---|.-|.|---||+=+-|-|
T Consensus 816 ~iA~y~wrakke~dLsFskgd~ 837 (1118)
T KOG1029|consen 816 AIALYPWRAKKENDLSFSKGDT 837 (1118)
T ss_pred HHhhccccccccccccccCCCe
Confidence 4444555555555555444443
No 106
>PHA02768 hypothetical protein; Provisional
Probab=68.35 E-value=2.5 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCchhhhcccccchhhhhhhhhcC
Q 009836 492 SSNVCEKCGQEFETRNKLHKHLGD 515 (524)
Q Consensus 492 ~~~~c~~c~~~f~sr~kl~~hl~~ 515 (524)
.|-.|+.||..|-.+.-|-.|+.-
T Consensus 4 ~~y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 4 LGYECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred cccCcchhCCeeccHHHHHHHHHh
Confidence 577899999999999999999875
No 107
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=62.17 E-value=5.6 Score=39.21 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=33.4
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 258 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~ 258 (524)
...|.|..|.-.-.|+..|..|...|||..+|+.-...
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~ 88 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK 88 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence 35689999999999999999999999999998865543
No 108
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=57.85 E-value=4.2 Score=26.97 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=12.0
Q ss_pred cccccccccccccC
Q 009836 222 SEFYCVLCGKKFKS 235 (524)
Q Consensus 222 ~~~~C~~C~K~F~s 235 (524)
-.|.|..|++.|.+
T Consensus 13 k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 13 KPYKCPYCGKSFSN 26 (26)
T ss_dssp SSEEESSSSEEESS
T ss_pred CCCCCCCCcCeeCc
Confidence 45899999999975
No 109
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=56.77 E-value=6.5 Score=38.49 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=31.9
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 255 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l 255 (524)
...|.|..|.-.-.|++.|..|...|||+.++..-
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 45689999999999999999999999999998754
No 110
>PHA00732 hypothetical protein
Probab=55.39 E-value=7.8 Score=32.81 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.7
Q ss_pred cccccccccccCHHHHHHhhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~S 245 (524)
|.|..|++.|.+...|..|.+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 6799999999999999999763
No 111
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=55.19 E-value=22 Score=32.08 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 009836 17 ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (524)
Q Consensus 17 ~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsDp 66 (524)
..+..+++.|.|.+-++.|||.....+........-++.|+.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999987443222222355577777766666654
No 112
>PF13446 RPT: A repeated domain in UCH-protein
Probab=51.31 E-value=29 Score=27.45 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHH
Q 009836 7 CLYEVLGLRKECTTDEIRSAYKKLAL 32 (524)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRkLal 32 (524)
.-|.+|||+++.+.+.|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999998776
No 113
>PHA00616 hypothetical protein
Probab=50.68 E-value=6.3 Score=30.03 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=18.4
Q ss_pred hhhhcccccchhhhhhhhhc
Q 009836 495 VCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~ 514 (524)
-|..||..|-.+.-|-.||.
T Consensus 3 qC~~CG~~F~~~s~l~~H~r 22 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLL 22 (44)
T ss_pred ccchhhHHHhhHHHHHHHHH
Confidence 49999999999999999983
No 114
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=48.87 E-value=12 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.3
Q ss_pred cccccccccccCHHHHHHhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQ 244 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~ 244 (524)
..|++|++.+ +..++..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 4699999999 7889989975
No 115
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=46.89 E-value=1.9e+02 Score=29.16 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=11.5
Q ss_pred hhCHHHHhHHHHhHHHH
Q 009836 149 KRDKRVMDMMVKKNEEI 165 (524)
Q Consensus 149 krDpRv~~~~~k~~~ee 165 (524)
-||||+..++++...++
T Consensus 175 prdprF~eml~~kEkee 191 (217)
T PF10147_consen 175 PRDPRFQEMLQEKEKEE 191 (217)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 67888888876544333
No 116
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=46.38 E-value=5.4 Score=39.55 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=28.6
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 256 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~ 256 (524)
...|||.+|+..|. .+.+.||..|=-|.-++..+-
T Consensus 82 e~lfyCE~Cd~~ip-~~~~snH~tSttHllsl~~~p 116 (223)
T KOG2384|consen 82 EALFYCEVCDIYIP-NSKKSNHFTSTTHLLSLQHIP 116 (223)
T ss_pred Cccchhhhhhhhcc-CCCCccchhhHHHHhhhccCC
Confidence 45799999987665 567899999999998777654
No 117
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=46.34 E-value=6.2 Score=27.20 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.0
Q ss_pred CchhhhcccccchhhhhhhhhcCCCC
Q 009836 493 SNVCEKCGQEFETRNKLHKHLGDTGH 518 (524)
Q Consensus 493 ~~~c~~c~~~f~sr~kl~~hl~~~gh 518 (524)
...|+.|+..|.+..-|-.||..--|
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H 28 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKH 28 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHH
Confidence 56899999999999999999875444
No 118
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=45.48 E-value=19 Score=37.94 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=30.1
Q ss_pred cccccccccccccC-HHHHHHhhhhHHHHHHHHHHHHHh
Q 009836 222 SEFYCVLCGKKFKS-EKQWTNHEQSKKHKEKVADLRESF 259 (524)
Q Consensus 222 ~~~~C~~C~K~F~s-~~~~~nH~~SkKHk~~~~~l~~~~ 259 (524)
.-.||.+|.--|++ .....+|++.+.|+.+|++--..|
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kritdi 47 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRITDI 47 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHHHH
Confidence 44689999887765 456789999999999998755444
No 119
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=41.37 E-value=1.4e+02 Score=36.54 Aligned_cols=11 Identities=9% Similarity=-0.115 Sum_probs=4.5
Q ss_pred cccccccccCH
Q 009836 226 CVLCGKKFKSE 236 (524)
Q Consensus 226 C~~C~K~F~s~ 236 (524)
|..|.-...+.
T Consensus 563 ~~~~~~~~~~~ 573 (1021)
T PTZ00266 563 RNHSGVRSGIH 573 (1021)
T ss_pred CCccccccccc
Confidence 44444443333
No 120
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=41.01 E-value=9.8 Score=40.62 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=28.6
Q ss_pred hhccccccccccccccCHHHHHHhhhhHHHHH
Q 009836 219 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 250 (524)
Q Consensus 219 ~~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~ 250 (524)
+.-+-+.|-.|.|.|...+.|.-|.+-|.|++
T Consensus 191 ekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 191 EKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred HHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 44567899999999999999999999999984
No 121
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=40.00 E-value=13 Score=37.90 Aligned_cols=25 Identities=28% Similarity=0.702 Sum_probs=22.1
Q ss_pred ccccccccccccCHHHHHHhhhhHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKK 247 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkK 247 (524)
.-.|++||+-|-.++-|..|.+-|-
T Consensus 10 kpwcwycnrefddekiliqhqkakh 34 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAKH 34 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhcc
Confidence 3469999999999999999998764
No 122
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=39.66 E-value=10 Score=40.75 Aligned_cols=21 Identities=43% Similarity=0.891 Sum_probs=19.3
Q ss_pred chhhhcccccchhhhhhhhhc
Q 009836 494 NVCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 494 ~~c~~c~~~f~sr~kl~~hl~ 514 (524)
.-|.+||+-|-.|.|||.||-
T Consensus 208 vACp~Cg~~F~~~tkl~DH~r 228 (467)
T KOG3608|consen 208 VACPHCGELFRTKTKLFDHLR 228 (467)
T ss_pred EecchHHHHhccccHHHHHHH
Confidence 459999999999999999984
No 123
>PTZ00448 hypothetical protein; Provisional
Probab=39.15 E-value=24 Score=38.10 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=31.5
Q ss_pred ccccccccccccCHHHHHHhhhhHHHHHHHHHHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 257 (524)
.|.|..|+-.|.+...+..|.+|-=|+=|+++--.
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~ 348 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNAR 348 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHHhc
Confidence 57899999999999999999999999999886543
No 124
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=39.04 E-value=16 Score=37.01 Aligned_cols=23 Identities=35% Similarity=0.897 Sum_probs=21.4
Q ss_pred ccccccccccccccCHHHHHHhh
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHE 243 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~ 243 (524)
.+-|||.-|+-.|++.-.|..|+
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehC 259 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHC 259 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhC
Confidence 47799999999999999999997
No 125
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=38.73 E-value=25 Score=27.15 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.8
Q ss_pred ccccccccccccCHHHHHHhhhh
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~S 245 (524)
.|-|+.|++ -.+...|..|...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCED 23 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHh
Confidence 478999999 5678889998764
No 126
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=37.42 E-value=17 Score=37.79 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.3
Q ss_pred ccccccccccccccCHHHHHHhhhhHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKK 247 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkK 247 (524)
...+.|.+|+|.|-|+-+|+-|+++-.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~ 185 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT 185 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC
Confidence 567899999999999999999998754
No 127
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=36.29 E-value=36 Score=32.80 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=31.5
Q ss_pred cccccccccccCHHHHHHhhhhHHHHHHHHHHHHHh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~ 259 (524)
|.|..|.=.=-.+..+..|+.|+-|++-+..|..++
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl 36 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKL 36 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcC
Confidence 689999877777899999999999999999886655
No 128
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=36.09 E-value=11 Score=43.88 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=26.7
Q ss_pred cccccccccccccCHHHHHHhhhhHHHHH
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHEQSKKHKE 250 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~ 250 (524)
..|.|..|.|.|..-..|-.|..|||-..
T Consensus 308 KPfeCpnCkKRFSHSGSySSHmSSKKCIs 336 (1007)
T KOG3623|consen 308 KPFECPNCKKRFSHSGSYSSHMSSKKCIS 336 (1007)
T ss_pred CCcCCcccccccccCCcccccccccchhh
Confidence 46999999999999999999999999873
No 129
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=35.75 E-value=7.9 Score=26.80 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=14.6
Q ss_pred cccccccccccCHHHHHHhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHE 243 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~ 243 (524)
|.|+-|.+.| +-..|++|-
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 5799999999 777888885
No 130
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=35.57 E-value=54 Score=33.44 Aligned_cols=18 Identities=39% Similarity=0.861 Sum_probs=14.3
Q ss_pred cccccccccccccCHHHH
Q 009836 222 SEFYCVLCGKKFKSEKQW 239 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~ 239 (524)
...||++|+-.+...+++
T Consensus 83 ~~~~Cv~Cg~~i~~~~a~ 100 (236)
T PF12269_consen 83 LSIYCVTCGHEIPSKKAL 100 (236)
T ss_pred eeeeeeeCCCcCCHHHHH
Confidence 457999999988776665
No 131
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=34.44 E-value=61 Score=31.96 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcC
Q 009836 15 RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (524)
Q Consensus 15 ~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~eA~e~F~~I~~AYevLsD 65 (524)
+++|+.+||..|+.++..+|--|. ..-..|..||+.|.=
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~------------~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE------------KSREAIEAAYDAILM 39 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHHH
Confidence 468999999999999999984332 234568999987653
No 132
>PF14968 CCDC84: Coiled coil protein 84
Probab=34.06 E-value=29 Score=37.10 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=27.8
Q ss_pred ccccccccccCHHHHHHhhhhHHHHHHHHHHHHHhh
Q 009836 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV 260 (524)
Q Consensus 225 ~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~~ 260 (524)
||.+|+..+-. ...|.=|.+|+++|..+-..+.
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~ 33 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFR 33 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHH
Confidence 89999987654 9999999999999987755554
No 133
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=31.92 E-value=19 Score=28.93 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=20.3
Q ss_pred ccccccccccccCHHHHHHhhh
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQ 244 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~ 244 (524)
-|.|+-|+..|.-.+.|..|.+
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHhh
Confidence 4789999999999999999985
No 134
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=31.83 E-value=9.8 Score=41.84 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=56.1
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh--------------------hccCCCchhHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVDEDEVM--------------------ADFGELDGEVEELG 280 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~~~e~~~~--------------------~~~~~~e~~~~~l~ 280 (524)
.+.+||..|.+.|.--.+|--|..++-|-++...........+... .+...++..|..+.
T Consensus 247 ~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~~~~~~kn~s~~~~~~~~~~~keia~tEa~v~k~~ 326 (497)
T KOG2636|consen 247 VEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLDTKLFAKNPSKKGHRREKERNKEIARTEALVKKLL 326 (497)
T ss_pred HHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhhhhhhccCcccchhhhhhhccchHHHHHHHHHHHH
Confidence 4568999999988888899999999988887776654433221111 11123345588888
Q ss_pred HHhhhcccchhhhhcCCCCCCC
Q 009836 281 ERFKDNVGVEEREIGSGVGGLS 302 (524)
Q Consensus 281 e~l~~~le~~~~e~ek~~~~~s 302 (524)
+.|.+....+.+.+.+++....
T Consensus 327 ~iL~eeR~~t~env~rKq~~ta 348 (497)
T KOG2636|consen 327 AILAEERKATRENVVRKQARTA 348 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhcch
Confidence 8888888888888877555444
No 135
>PHA00733 hypothetical protein
Probab=31.47 E-value=32 Score=31.58 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=20.4
Q ss_pred ccccccccccccCHHHHHHhhhhHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKH 248 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKH 248 (524)
.|.|..|++.|.+...|..|.. ++|
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~-~~h 123 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVC-KKH 123 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHH-Hhc
Confidence 4789999999999999999854 344
No 136
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=30.40 E-value=16 Score=39.60 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=23.9
Q ss_pred ccccccccccccccCHHHHHHhhhhHHHHHHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 252 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~ 252 (524)
.-.-||..|.-.|.+ |..|+.|++|++-.
T Consensus 420 tk~GYCENCreky~~---lE~Hi~s~~HrrFA 448 (468)
T COG5067 420 TKKGYCENCREKYES---LEQHIVSEKHRRFA 448 (468)
T ss_pred cccchhHHHHHHHHH---HHHHhhhhhhhhhh
Confidence 344699999999975 88999999998643
No 137
>PHA00733 hypothetical protein
Probab=30.11 E-value=33 Score=31.48 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred cccccccccccccCHHHHHHhhhh
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~~S 245 (524)
..|.|..|++.|.+...|..|...
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc
Confidence 458999999999999999999874
No 138
>PF14968 CCDC84: Coiled coil protein 84
Probab=29.68 E-value=44 Score=35.79 Aligned_cols=68 Identities=13% Similarity=0.297 Sum_probs=48.2
Q ss_pred cccccccccccccCH------HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhccCCCchhHHHHHHHhhhcccc
Q 009836 222 SEFYCVLCGKKFKSE------KQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGV 289 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~------~~~~nH~~SkKHk~~~~~l~~~~~~e~~~~~~~~~~e~~~~~l~e~l~~~le~ 289 (524)
.-|.|+.|+---... .-+..|+.|..|+++|...-+.-.-+-......-..+...+.....+...|..
T Consensus 57 ~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~~d~~d~f~Is~~d~~r~kk~~~~~l~~ 130 (336)
T PF14968_consen 57 NRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWKNGADMDLKDKFRISEEDYARFKKKCEKALDE 130 (336)
T ss_pred ceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHHcCCCcccccceeecHHHHHHHHHHHHHHHHH
Confidence 347799999876654 45778999999999999997766555444444555566666666666655544
No 139
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=29.10 E-value=2.4e+02 Score=31.37 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=29.4
Q ss_pred ccccccccccCHHHHHHhhhhHHHHHHHHHHH
Q 009836 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 256 (524)
Q Consensus 225 ~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~ 256 (524)
.|..|+-...|+--|-+|.+..||..+|..|-
T Consensus 495 qcslcnvlissevylfshvkgrkhqqal~e~~ 526 (672)
T KOG4722|consen 495 QCSLCNVLISSEVYLFSHVKGRKHQQALNELL 526 (672)
T ss_pred ccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence 69999999999999999999999999887654
No 140
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=29.08 E-value=41 Score=36.48 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.5
Q ss_pred ccccccccccccCHHHHHHhhhhHHHHHHHHHHHHH
Q 009836 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 258 (524)
Q Consensus 223 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~ 258 (524)
.|.|..|...|.+.-....|-+|-=|+=||++--..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~ 38 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVAS 38 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhc
Confidence 578999999999999999999999999888754433
No 141
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=28.16 E-value=29 Score=25.36 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=15.5
Q ss_pred cccccccccccccCH----HHHHHhhh
Q 009836 222 SEFYCVLCGKKFKSE----KQWTNHEQ 244 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~----~~~~nH~~ 244 (524)
....|..|++.|+.. +.|..|++
T Consensus 15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 15 KKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp S-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 456899999999874 88999983
No 142
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.32 E-value=57 Score=25.18 Aligned_cols=30 Identities=37% Similarity=0.717 Sum_probs=15.4
Q ss_pred ccccccccccCHHHHHHhhhhHHHHHHHHHHHH
Q 009836 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (524)
Q Consensus 225 ~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 257 (524)
-|++|+..|..... ..-.+++...+..+..
T Consensus 22 ~CPlC~r~l~~e~~---~~li~~~~~~i~~~~~ 51 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR---QELIKKYKSEIEELPE 51 (54)
T ss_dssp E-TTT--EE-HHHH---HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHH---HHHHHHHHHHHHhhhh
Confidence 79999999987765 3334444444444443
No 143
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=25.79 E-value=40 Score=28.39 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred ccccccccccccccCHHHHHHhhhhH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSK 246 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~Sk 246 (524)
.+.||...|+|.|.|..++..++...
T Consensus 26 ~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 26 FDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred ceEEEECCCCCEEECHHHHHHHHHhC
Confidence 46799999999999999999888653
No 144
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=25.73 E-value=38 Score=26.82 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=19.2
Q ss_pred cccccccccccccCHHHHHHhh
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHE 243 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~ 243 (524)
.-+||.-|+-.|.+...|..|.
T Consensus 26 ~~~YC~~Cg~~Y~d~~dL~~~C 47 (55)
T PF13821_consen 26 EHNYCFWCGTKYDDEEDLERNC 47 (55)
T ss_pred hCceeeeeCCccCCHHHHHhCC
Confidence 4579999999999999998764
No 145
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=25.59 E-value=28 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=17.1
Q ss_pred CCccccccccCCchhhhcccccch
Q 009836 482 GNKTKTASKNSSNVCEKCGQEFET 505 (524)
Q Consensus 482 g~k~k~~~~~~~~~c~~c~~~f~s 505 (524)
|-..-++..-++.+|..||+.|=+
T Consensus 21 ~~~~~~i~~vp~~~C~~CGE~~~~ 44 (46)
T TIGR03831 21 GGELIVIENVPALVCPQCGEEYLD 44 (46)
T ss_pred CCEEEEEeCCCccccccCCCEeeC
Confidence 334445556688899999998854
No 146
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=24.93 E-value=34 Score=40.48 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=20.8
Q ss_pred cccccccccccCHHHHHHhhhh
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~S 245 (524)
-+|.+|+|.|.+..+|+.|.++
T Consensus 880 h~C~vCgk~FsSSsALqiH~rT 901 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRT 901 (958)
T ss_pred hhhccchhcccchHHHHHhhhc
Confidence 5899999999999999999986
No 147
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=24.82 E-value=1.3e+02 Score=29.83 Aligned_cols=35 Identities=29% Similarity=0.583 Sum_probs=0.0
Q ss_pred ccccccccc-ccccCHHHHHHhhhhHHHHHHHHHHH
Q 009836 222 SEFYCVLCG-KKFKSEKQWTNHEQSKKHKEKVADLR 256 (524)
Q Consensus 222 ~~~~C~~C~-K~F~s~~~~~nH~~SkKHk~~~~~l~ 256 (524)
-.|+|.+|+ .+|.=.++|..|..--+|.--+.-|-
T Consensus 100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLG 135 (196)
T PF11931_consen 100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLG 135 (196)
T ss_dssp ------------------------------------
T ss_pred CeeeeEeCCCcceecHHHHHHhcChhHHHccChhcC
Confidence 358999996 56789999999999999987776553
No 148
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=23.51 E-value=30 Score=38.04 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=23.2
Q ss_pred ccccccccccccccCHHHHHHhhhhHH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSKK 247 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~SkK 247 (524)
..+|.|..|.|.|....-|..|.-|-.
T Consensus 354 ~gi~~C~~C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 354 SGIFSCHTCGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred CceeecHHhhhhhHHHHHHHHhHHhhh
Confidence 358999999999999999999976643
No 149
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=22.32 E-value=43 Score=31.21 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=14.5
Q ss_pred ccccccccccccccCHHHHHHhhhhH
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQSK 246 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~Sk 246 (524)
.+...|-.|+|.|++- +.|+.+.
T Consensus 70 ~d~i~clecGk~~k~L---krHL~~~ 92 (132)
T PF05443_consen 70 PDYIICLECGKKFKTL---KRHLRTH 92 (132)
T ss_dssp SS-EE-TBT--EESBH---HHHHHHT
T ss_pred cCeeEEccCCcccchH---HHHHHHc
Confidence 4567999999999986 6777653
No 150
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.32 E-value=41 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=16.8
Q ss_pred CCchhhhcccccchhhhhhh
Q 009836 492 SSNVCEKCGQEFETRNKLHK 511 (524)
Q Consensus 492 ~~~~c~~c~~~f~sr~kl~~ 511 (524)
+.-+|.+||..|.-|-|.-+
T Consensus 7 p~K~C~~C~rpf~WRKKW~~ 26 (42)
T PF10013_consen 7 PSKICPVCGRPFTWRKKWAR 26 (42)
T ss_pred CCCcCcccCCcchHHHHHHH
Confidence 56789999999999987643
No 151
>PHA00732 hypothetical protein
Probab=21.55 E-value=42 Score=28.38 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.3
Q ss_pred hhhhcccccchhhhhhhhhc
Q 009836 495 VCEKCGQEFETRNKLHKHLG 514 (524)
Q Consensus 495 ~c~~c~~~f~sr~kl~~hl~ 514 (524)
.|..||..|.+...|-.|+.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred cCCCCCCccCCHHHHHHHhh
Confidence 49999999999999999985
No 152
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=21.22 E-value=38 Score=40.19 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.1
Q ss_pred cccccccccccCHHHHHHhhhhH
Q 009836 224 FYCVLCGKKFKSEKQWTNHEQSK 246 (524)
Q Consensus 224 ~~C~~C~K~F~s~~~~~nH~~Sk 246 (524)
..|..|.|+|.|..+|+.|++|-
T Consensus 354 hkCr~CakvfgS~SaLqiHlRSH 376 (958)
T KOG1074|consen 354 HKCRFCAKVFGSDSALQIHLRSH 376 (958)
T ss_pred chhhhhHhhcCchhhhhhhhhcc
Confidence 36999999999999999999983
No 153
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=21.07 E-value=53 Score=34.24 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=22.3
Q ss_pred cccccccccccccCHHHHHHhhhhHHH
Q 009836 222 SEFYCVLCGKKFKSEKQWTNHEQSKKH 248 (524)
Q Consensus 222 ~~~~C~~C~K~F~s~~~~~nH~~SkKH 248 (524)
..|-|..|+|.|.-..-|..|+++--+
T Consensus 214 KPF~C~hC~kAFADRSNLRAHmQTHS~ 240 (279)
T KOG2462|consen 214 KPFSCPHCGKAFADRSNLRAHMQTHSD 240 (279)
T ss_pred CCccCCcccchhcchHHHHHHHHhhcC
Confidence 468999999999999999888876443
No 154
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=5.2e+02 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCCCCCcccchhhHHHhHHHHHH---HHHHHHHHHHHHHHHH
Q 009836 109 SDSGPNRKSRRVMEEENKKLRKK---AKREYNETVRELAAFV 147 (524)
Q Consensus 109 ~d~a~~R~~RR~mEkeNkk~r~k---~rkeyn~~IR~Lve~~ 147 (524)
.+-...|.++|.+.+..+..++. ..+-+..-|+++-..+
T Consensus 179 ~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRv 220 (508)
T KOG0717|consen 179 SDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRV 220 (508)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 44456788888888766554433 3344444454443333
No 155
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=20.42 E-value=66 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.8
Q ss_pred ccccccccccccccCHHHHHHhhhh
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHEQS 245 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~~S 245 (524)
.+.+|...|+|.|.|..++..++..
T Consensus 25 ~dv~Y~sP~Gk~~Rs~~ev~~yL~~ 49 (62)
T cd00122 25 GDVYYYSPCGKKLRSKPEVARYLEK 49 (62)
T ss_pred ceEEEECCCCceecCHHHHHHHHHh
Confidence 4678999999999999999888764
No 156
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=20.39 E-value=28 Score=36.99 Aligned_cols=23 Identities=22% Similarity=0.611 Sum_probs=20.2
Q ss_pred ccccccccccccccCHHHHHHhh
Q 009836 221 RSEFYCVLCGKKFKSEKQWTNHE 243 (524)
Q Consensus 221 ~~~~~C~~C~K~F~s~~~~~nH~ 243 (524)
...|.|.+|+|.+|+.+-|+=|.
T Consensus 396 ~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 396 DKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CCceeccccchhhccCccceecc
Confidence 35689999999999999998885
Done!