BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009837
         (524 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 345 ENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVG 404
           EN+G++  TRV S  VI  +A F I  S +GK  A    IP  +   V  +L+G++ + G
Sbjct: 290 ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASG 349

Query: 405 LSFL--QFTNMNSMRNLFITGVALFLGLS 431
           +  L     + N  +NL +T V L +G+S
Sbjct: 350 IRVLIESKVDYNKAQNLILTSVILIIGVS 378


>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
           Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
           From Mycobacterium Tuberculosis
 pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
           Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
           From Mycobacterium Tuberculosis
 pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
           Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
           From Mycobacterium Tuberculosis
          Length = 281

 Score = 32.7 bits (73), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 181 VVGRCVEIGIPMLILFIAFSQ----YLKNFKTRHLPIMERFALLITITVIWAYAHLLTAS 236
           V+GR V +G P+ +L    S+     L +  TR LP + R A ++   V    AHLLTA 
Sbjct: 163 VIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVAAV--GVAHLLTAD 220


>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
           Sinorhizobium Meliloti 1021
 pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
           Sinorhizobium Meliloti 1021
          Length = 491

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 45  LGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGIN 80
           LG  V +  FL  ++GG DG+  + +Q  L  +GI+
Sbjct: 220 LGAKVTVVEFLDTILGGXDGEVAKQLQRXLTKQGID 255


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,590,040
Number of Sequences: 62578
Number of extensions: 570009
Number of successful extensions: 1198
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 8
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)