Query 009837
Match_columns 524
No_of_seqs 192 out of 1783
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 17:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 2.2E-93 4.8E-98 734.8 35.4 498 20-523 1-507 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 3E-79 6.6E-84 639.3 37.5 409 20-484 5-436 (451)
3 PRK11412 putative uracil/xanth 100.0 3.8E-74 8.2E-79 608.6 43.5 402 31-484 8-430 (433)
4 TIGR03616 RutG pyrimidine util 100.0 4.1E-68 8.9E-73 565.4 44.4 403 17-484 16-428 (429)
5 PRK10720 uracil transporter; P 100.0 9.7E-68 2.1E-72 562.8 41.4 395 19-491 2-413 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 5.5E-65 1.2E-69 540.8 40.9 392 27-480 1-415 (415)
7 TIGR03173 pbuX xanthine permea 100.0 1.3E-64 2.8E-69 537.5 40.4 388 37-482 1-406 (406)
8 PF00860 Xan_ur_permease: Perm 100.0 8.1E-61 1.8E-65 505.6 27.2 371 31-435 1-386 (389)
9 COG2252 Xanthine/uracil/vitami 100.0 3E-28 6.4E-33 254.0 33.1 383 17-482 5-412 (436)
10 TIGR00843 benE benzoate transp 100.0 1.1E-25 2.4E-30 234.2 33.9 315 32-404 22-349 (395)
11 PF03594 BenE: Benzoate membra 99.9 1.8E-23 3.9E-28 214.2 32.0 314 32-403 6-332 (378)
12 COG0659 SUL1 Sulfate permease 99.9 1.6E-22 3.5E-27 221.2 33.0 319 30-408 21-371 (554)
13 COG3135 BenE Uncharacterized p 99.9 5E-22 1.1E-26 199.1 29.8 318 31-406 20-350 (402)
14 TIGR00815 sulP high affinity s 99.9 7.8E-20 1.7E-24 202.1 33.8 335 30-410 14-384 (563)
15 PRK11660 putative transporter; 99.9 5.4E-19 1.2E-23 195.6 32.6 317 29-400 28-394 (568)
16 KOG0236 Sulfate/bicarbonate/ox 99.6 2.8E-13 6E-18 151.8 26.3 325 47-410 91-453 (665)
17 PF00916 Sulfate_transp: Sulfa 99.6 1.3E-14 2.9E-19 146.6 12.4 241 145-413 1-275 (280)
18 TIGR00834 ae anion exchange pr 98.5 0.00022 4.8E-09 82.0 32.3 314 70-411 403-799 (900)
19 KOG1172 Na+-independent Cl/HCO 98.4 0.00036 7.8E-09 78.7 29.2 340 38-409 363-773 (876)
20 PF11840 DUF3360: Protein of u 98.1 0.002 4.3E-08 66.5 24.7 340 18-414 53-419 (492)
21 PF00955 HCO3_cotransp: HCO3- 96.9 0.00093 2E-08 72.9 4.5 200 196-411 256-480 (510)
22 TIGR00843 benE benzoate transp 85.7 36 0.00079 36.4 16.2 143 53-231 244-393 (395)
23 TIGR00815 sulP high affinity s 82.7 13 0.00028 41.7 12.0 119 282-412 18-153 (563)
24 PF03594 BenE: Benzoate membra 75.5 1.2E+02 0.0025 32.4 16.2 163 32-230 207-376 (378)
25 COG0659 SUL1 Sulfate permease 72.4 28 0.00061 39.0 10.8 120 282-413 25-155 (554)
26 PRK11660 putative transporter; 71.4 48 0.001 37.2 12.4 116 282-408 33-155 (568)
27 PF13792 Sulfate_tra_GLY: Sulf 57.6 24 0.00052 29.2 5.0 59 29-100 15-75 (84)
28 PRK11412 putative uracil/xanth 57.2 44 0.00096 36.2 8.4 76 70-167 277-352 (433)
29 TIGR00801 ncs2 uracil-xanthine 56.7 1.3E+02 0.0027 32.4 11.8 77 70-168 271-347 (415)
30 PF05977 MFS_3: Transmembrane 54.3 3.5E+02 0.0075 30.1 15.6 134 19-168 210-346 (524)
31 TIGR00834 ae anion exchange pr 51.2 3.2E+02 0.007 32.6 14.5 188 276-482 366-615 (900)
32 PF00860 Xan_ur_permease: Perm 51.0 1.6E+02 0.0035 31.2 11.5 116 34-172 234-350 (389)
33 TIGR03173 pbuX xanthine permea 45.6 4E+02 0.0087 28.3 17.2 75 70-166 255-329 (406)
34 TIGR03616 RutG pyrimidine util 39.8 3.7E+02 0.008 29.1 12.1 76 70-168 282-358 (429)
35 COG4129 Predicted membrane pro 36.3 4.5E+02 0.0098 27.5 11.6 77 72-169 15-91 (332)
36 COG3817 Predicted membrane pro 32.9 2.6E+02 0.0057 28.2 8.6 34 276-309 163-196 (313)
37 COG2233 UraA Xanthine/uracil p 25.8 2.5E+02 0.0054 30.7 7.8 32 135-166 325-356 (451)
38 PLN00028 nitrate transmembrane 25.4 8.7E+02 0.019 26.1 14.8 40 56-95 63-106 (476)
39 TIGR01299 synapt_SV2 synaptic 21.6 1.3E+03 0.029 26.9 13.4 39 58-96 196-238 (742)
40 PF11821 DUF3341: Protein of u 21.5 2.1E+02 0.0045 27.1 5.6 24 258-284 83-106 (173)
41 PF06166 DUF979: Protein of un 21.5 7.4E+02 0.016 25.6 9.7 32 138-172 31-62 (308)
42 PRK10720 uracil transporter; P 20.9 6.4E+02 0.014 27.2 10.0 77 70-168 262-338 (428)
43 PF01970 TctA: Tripartite tric 20.3 4.8E+02 0.01 28.2 8.7 26 317-342 227-252 (419)
44 PF01034 Syndecan: Syndecan do 20.2 36 0.00077 26.7 0.1 34 466-499 17-50 (64)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-93 Score=734.81 Aligned_cols=498 Identities=59% Similarity=1.074 Sum_probs=472.5
Q ss_pred cccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhH-HHHHHHHHHHHHHHHHHHHHhCCCcceEEecc
Q 009837 20 LEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDK-VRVVQTLLFVEGINTLLQTLFGTRLPTVVGGS 98 (524)
Q Consensus 20 ~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~-~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gps 98 (524)
+.|++||.|||...+++|+||++.|+++++++|.+++.+++.++++. +.+||+.+|++||.|++|++||.|||+++|+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999888 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCCCcccccchhh----hhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHh
Q 009837 99 YAFMVPIISIIHDPSLASIEDNHV----RFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGL 174 (524)
Q Consensus 99 fa~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l 174 (524)
|+|++|+.++..+..+....++++ .|+..+++++|+.++++.+++++|++|+.+++.|++.|+.+.++++++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999988654443333333 7999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHHhh--hhhhh--cccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccc
Q 009837 175 FDRGFPVVGRCVEIGIPMLILFIAFSQY--LKNFK--TRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNC 250 (524)
Q Consensus 175 ~~~~~~~~~~~~~i~l~~l~l~i~~~~~--~~~~~--~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~ 250 (524)
+..+.+.++.||.+++..+++++++++| .++.. .++++.++++++++++.+.|++|.++..++.||++++.++.++
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 53332 2346789999999999999999999999999999888888999
Q ss_pred ccCccCcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHH
Q 009837 251 RTDKANLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILL 330 (524)
Q Consensus 251 ~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~il 330 (524)
++|.+..+.++||+.+|+|++||.|+||.+....|+...++.++|++|++.+++|.+++++++.+.+|||+..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99988878899999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred hhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhc
Q 009837 331 SGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQF 410 (524)
Q Consensus 331 aglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~ 410 (524)
+|+||+..++|+|+||+|+++.||+.||++.+++|.+|+++|++.||++++++||.|++||++++.|+++...|+++++.
T Consensus 321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf 400 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF 400 (510)
T ss_pred HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehHHHHhhhhhhHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhccCCCCCcccc
Q 009837 411 TNMNSMRNLFITGVALFLGLSVPEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNTLDYKDSAKDR 490 (524)
Q Consensus 411 v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~~~~~~~~~~~ 490 (524)
+|+++.||.+|+|+|+++|+.+|.||+++ .+|+|+..++++++++.++++.+.+|+++|++||++.|.. +||||
T Consensus 401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~ga-tr~~R 474 (510)
T KOG1292|consen 401 VDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPGA-TREQR 474 (510)
T ss_pred eccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCCC-ChHhc
Confidence 99999999999999999999999999987 4579999999999999999999999999999999999944 89999
Q ss_pred CchhhhhhcccCCCCCCcccccCCccCcCCCCC
Q 009837 491 GMPWWVKFRTFKGDTRNEEFYTLPFNLNRFFPP 523 (524)
Q Consensus 491 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (524)
|++||+|.+++++|.++||+|++|+|+||+||+
T Consensus 475 G~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~ 507 (510)
T KOG1292|consen 475 GLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPR 507 (510)
T ss_pred CCcchhccccccCCccccccccCcHHHHhhccc
Confidence 999999999999999999999999999999996
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-79 Score=639.29 Aligned_cols=409 Identities=28% Similarity=0.511 Sum_probs=379.1
Q ss_pred cccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEE
Q 009837 20 LEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTVV 95 (524)
Q Consensus 20 ~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv~ 95 (524)
.....|||+|+.|.+++|+||+++||++++++|++++.+.+++++|+++++|+++|+||++|++|.+ +|.|+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~l 84 (451)
T COG2233 5 IYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYL 84 (451)
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeE
Confidence 4455788889999999999999999999999999999999999999999999999999999999997 566999999
Q ss_pred ecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhcCcchHHHHHHHHHhHh
Q 009837 96 GGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWA-ICSRFFSPLGMVPVISLVGFGL 174 (524)
Q Consensus 96 Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~-~l~~~~pp~V~G~~v~lIGl~l 174 (524)
|+||++++|++++.++++ .+++.++|+++++|+++++++.+ ++ |++|+|||+|+|.++++||++|
T Consensus 85 G~sFafi~p~i~~~~~~g------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGlsL 150 (451)
T COG2233 85 GSSFAFVAPMIAIGGTTG------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGLSL 150 (451)
T ss_pred echHHHHHHHHHHHhccC------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehhhh
Confidence 999999999999877642 35899999999999999999875 56 9999999999999999999999
Q ss_pred hhhhccccc--------------chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCC
Q 009837 175 FDRGFPVVG--------------RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYK 240 (524)
Q Consensus 175 ~~~~~~~~~--------------~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~ 240 (524)
.+.++++++ +++.+++.+++.++++++|.|+ ++|+.++|+|+++||++++.+|
T Consensus 151 ~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G------ 217 (451)
T COG2233 151 APVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMG------ 217 (451)
T ss_pred HHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhC------
Confidence 999887642 1456788888888888888765 4789999999999999999997
Q ss_pred CCCCccccccccCccCcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcc
Q 009837 241 HRPDLTQMNCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRG 320 (524)
Q Consensus 241 ~~~~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~ 320 (524)
++|+++ +.++|||++|++++|+. +||+.++++++++++++++|++||+.|++++++++.+++++++|+
T Consensus 218 ----------~vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg 285 (451)
T COG2233 218 ----------MVDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRG 285 (451)
T ss_pred ----------CcCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccc
Confidence 468876 88999999999999998 999999999999999999999999999999999887777999999
Q ss_pred hhhhchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHH
Q 009837 321 IGWQGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLV 400 (524)
Q Consensus 321 l~adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i 400 (524)
+++||++++++|+||++ |.|+|+||+|+++.||++|||+..+++++++++|++||+++++++||.||+||+.+++||++
T Consensus 286 ~~aDGlat~iag~fg~~-p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~I 364 (451)
T COG2233 286 LLADGLATLIAGLFGGF-PNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGMI 364 (451)
T ss_pred eeeccHHHHHHHhcCCC-CCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999995 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhccccCCCc-ceeeehHHHHhhhhh---hHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHH
Q 009837 401 ASVGLSFLQFTNMNSMR-NLFITGVALFLGLSV---PEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVF 476 (524)
Q Consensus 401 ~~~Gi~~l~~v~~~~~r-n~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ail 476 (524)
..+|+|++.+.|+|++| |.+|+++++.+|++. |++++++ |++++.+++||+++|+++|++
T Consensus 365 a~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~~----------------p~~~~~l~~sGia~g~i~AIv 428 (451)
T COG2233 365 AASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQL----------------PAWLRPLLSSGIALGTLTAIV 428 (451)
T ss_pred HHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhhC----------------cHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999756 999999999999994 7777764 899999999999999999999
Q ss_pred HhhccCCC
Q 009837 477 LDNTLDYK 484 (524)
Q Consensus 477 Ln~~~~~~ 484 (524)
||+++|+.
T Consensus 429 LNlll~~~ 436 (451)
T COG2233 429 LNLLLPGE 436 (451)
T ss_pred HHHhcccc
Confidence 99999953
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=3.8e-74 Score=608.63 Aligned_cols=402 Identities=19% Similarity=0.308 Sum_probs=353.0
Q ss_pred hHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHh
Q 009837 31 GEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIH 110 (524)
Q Consensus 31 ~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~ 110 (524)
.+++++|+||+++|+++++++|+++++++|+|++|+.+++|++++++|++|++|+++|+|||+++|+||+|+++++++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred CCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhccccc-c-----
Q 009837 111 DPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVVG-R----- 184 (524)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~~-~----- 184 (524)
.....+. + +...++..+|+.+++|++++++|++++++|++|+|||+|+|+++++||++|.+.+++++. .
T Consensus 88 ~~~~~g~--~---~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~ 162 (433)
T PRK11412 88 GEASRGT--P---INDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA 162 (433)
T ss_pred cccccCc--c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc
Confidence 2110000 0 112344455679999999999999999999999999999999999999999999887531 1
Q ss_pred ---------hhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHH-HHHhcCCCCCCCCccccccccCc
Q 009837 185 ---------CVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAH-LLTASGAYKHRPDLTQMNCRTDK 254 (524)
Q Consensus 185 ---------~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~-~lg~~~~~~~~~~~~~~~~~~d~ 254 (524)
++.+++.++++++.++++.| +++|++++|+|+++||+++. .++ . |+
T Consensus 163 ~~~~~~~~~~~~~a~~~l~~il~~~~~~~-------g~~~~~svLiGiv~G~v~a~~~~g----------------~-d~ 218 (433)
T PRK11412 163 DPNGKIQLPPFGLSVAVMCLVLAMIIFLP-------QRIARYSLLVGTIVGWILWAFCFP----------------S-SH 218 (433)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHhC----------------C-Cc
Confidence 23456666666666666554 45789999999999999975 443 2 55
Q ss_pred cCcCCCCCCccCcccccccCCc-cCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhh
Q 009837 255 ANLISSAPWIKIPYPLQWGAPT-FDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGL 333 (524)
Q Consensus 255 ~~~i~~a~~~~~P~~~~fg~P~-F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilagl 333 (524)
+. +.+++|. +++|+.|. ||+.+++++++++++.++|++||+.++++..+++.+++++++|++.+||++|+++|+
T Consensus 219 ~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~lagl 293 (433)
T PRK11412 219 SL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVP 293 (433)
T ss_pred ch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHh
Confidence 53 5678884 35689995 999999999999999999999999999999987765578999999999999999999
Q ss_pred hcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 009837 334 FGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQFTNM 413 (524)
Q Consensus 334 fG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~v~~ 413 (524)
||+. |+|+|+||+|+++.||++||++..++|++++++||+||+++++++||.||+||+++++|+++..+|+|+++++|+
T Consensus 294 fg~~-p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~~ 372 (433)
T PRK11412 294 LAVI-PFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITF 372 (433)
T ss_pred cCCC-CCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9996 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeehHHHHhhhhh---h-HHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhccCCC
Q 009837 414 NSMRNLFITGVALFLGLSV---P-EYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNTLDYK 484 (524)
Q Consensus 414 ~~~rn~~ivg~sl~~Gl~~---p-~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~~~~~ 484 (524)
| +||.+|+|+++.+|++. | ++++++ |++++.+++||+++|+++|++||+++|++
T Consensus 373 ~-~rn~~ivg~sl~~Glg~~~~p~~~~~~~----------------P~~~~~~l~sgi~~g~l~AilLn~~~~~~ 430 (433)
T PRK11412 373 T-ARNIYRLALPLFVGIFLMALPPVYLQDL----------------PLTLRPLLSNGLLVGILLAVLMENLIPWE 430 (433)
T ss_pred C-cccchhhHHHHHHHhhHHhCCHHHHHHC----------------hHHHHHHHcCcHHHHHHHHHHHHhhcCcc
Confidence 7 78999999999999996 5 577764 89999999999999999999999999953
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=4.1e-68 Score=565.39 Aligned_cols=403 Identities=23% Similarity=0.371 Sum_probs=349.1
Q ss_pred ccCcccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-hCCCcceEE
Q 009837 17 LQGLEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL-FGTRLPTVV 95 (524)
Q Consensus 17 ~~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~-~G~rlPiv~ 95 (524)
.++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+. +|+|+|+++
T Consensus 16 ~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~ 84 (429)
T TIGR03616 16 LEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYL 84 (429)
T ss_pred CcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEE
Confidence 355889999999999999999999999999999999997 68875 579999999999974 799999999
Q ss_pred ecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHhcCcchHHHHHHHHHh
Q 009837 96 GGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLW---AICSRFFSPLGMVPVISLVGF 172 (524)
Q Consensus 96 Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~---~~l~~~~pp~V~G~~v~lIGl 172 (524)
|+||+|++++.++..... .. . ..++++++|+++++|++++++++++++ +|++|+|||+|+|.++++||+
T Consensus 85 G~sf~f~~~~~~~~~~~~---~~-~----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGl 156 (429)
T TIGR03616 85 GSSAAFVGAVIAATGYNG---QG-T----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGL 156 (429)
T ss_pred cCcHHHHHHHHHHHhhcc---cC-C----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999998876642110 00 0 146899999999999999999998654 889999999999999999999
Q ss_pred Hhhhhhccccc----chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccc
Q 009837 173 GLFDRGFPVVG----RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQM 248 (524)
Q Consensus 173 ~l~~~~~~~~~----~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~ 248 (524)
++.+.++++.+ ++| .++.+++.+++++++.|+ ++|++++|+|+++||++|+.++.....+
T Consensus 157 sL~~vg~~~~~~~~~~~~-~al~tl~~i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~~g~~-------- 220 (429)
T TIGR03616 157 NLAPIAVKSVSASGFDSW-MAVLTILCIGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNVFGLG-------- 220 (429)
T ss_pred HHHHHHHHhccccccccH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcCCC--------
Confidence 99999988653 223 466666666666666665 4678999999999999998864210001
Q ss_pred ccccCccCcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHH
Q 009837 249 NCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGI 328 (524)
Q Consensus 249 ~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ 328 (524)
.++|++. +.+++|+++| +|+.|+||++.++.+++.+++.++|++|++.++++..+++. +++++|++.+||++|
T Consensus 221 -~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~l~adGl~t 293 (429)
T TIGR03616 221 -KAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRAFVGDGLAT 293 (429)
T ss_pred -ccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CchhccchhhhhHHH
Confidence 1467764 7788999999 57789999999999999999999999999999999987553 346999999999999
Q ss_pred HHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhh
Q 009837 329 LLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFL 408 (524)
Q Consensus 329 ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l 408 (524)
+++|++|+. ++|+|+||+|+++.||++||++...+++++++++++||++++++.||.||+||+++++|+++..+|+|++
T Consensus 294 ~~agl~g~~-p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 294 MLSGSVGGT-GVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARIW 372 (429)
T ss_pred HHHHhcCCC-CCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 7999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --hccccCCCcceeeehHHHHhhhhhhHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhccCCC
Q 009837 409 --QFTNMNSMRNLFITGVALFLGLSVPEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNTLDYK 484 (524)
Q Consensus 409 --~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~~~~~ 484 (524)
+++|++++||.+|+|+|+.+|++.. +.+++.+++||+++|+++|++||+++|+|
T Consensus 373 ~~~~~d~~~~rn~~ivg~sl~~g~g~~----------------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 373 VQNKVDLTQNGNLIMVAVTLVLGAGDF----------------------ALTIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred HhccCCcCccceeehhHHHHHHHhHHH----------------------HHHHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 6889988889999999999999763 23567889999999999999999999954
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=9.7e-68 Score=562.75 Aligned_cols=395 Identities=23% Similarity=0.387 Sum_probs=346.8
Q ss_pred CcccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHh-CCCcceEEec
Q 009837 19 GLEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLF-GTRLPTVVGG 97 (524)
Q Consensus 19 ~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~-G~rlPiv~Gp 97 (524)
+..|++|||||+++++++|+||+++|+++++++|+++ |+|+++ +++++|++|++|++. |.|+|+++|+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 5789999999999999999999999999999999986 788753 789999999999986 4699999999
Q ss_pred chhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHhcCcchHHHHHHHHHhHh
Q 009837 98 SYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ--L-WAICSRFFSPLGMVPVISLVGFGL 174 (524)
Q Consensus 98 sfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g--l-~~~l~~~~pp~V~G~~v~lIGl~l 174 (524)
||+|++++..+.. ++|++++|+++++|+++++++++. + ++|++|+|||.|+|.++++||+++
T Consensus 71 sfa~i~~~~~~~~---------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L 135 (428)
T PRK10720 71 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 135 (428)
T ss_pred cHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 9999998887643 369999999999999999999862 1 578999999999999999999999
Q ss_pred hhhhccccc-----------chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 009837 175 FDRGFPVVG-----------RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRP 243 (524)
Q Consensus 175 ~~~~~~~~~-----------~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~ 243 (524)
.+.++++.+ .++.+++.+++++++++++.|+ ++|++++|+|+++||++++.+|.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg-------~~~~~~iLigIvvG~ila~~lG~-------- 200 (428)
T PRK10720 136 AGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGM-------- 200 (428)
T ss_pred HHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhcc-------HHHHhHHHHHHHHHHHHHHHhcC--------
Confidence 998876432 1345677777766665555544 56789999999999999999873
Q ss_pred CccccccccCccCcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhh
Q 009837 244 DLTQMNCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGW 323 (524)
Q Consensus 244 ~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~a 323 (524)
.|++. +.+++|+++|. |+.|+||+..++.+++.+++.++|++|++.++++..+++..+++++||++.+
T Consensus 201 --------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~a 268 (428)
T PRK10720 201 --------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFA 268 (428)
T ss_pred --------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhh
Confidence 35543 66789999994 5679999999999999999999999999999999987654456799999999
Q ss_pred hchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHH
Q 009837 324 QGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASV 403 (524)
Q Consensus 324 dGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~ 403 (524)
||++|+++|+||+. ++|+|+||+|+++.||++||++..++++++++++|+||++++++.||.||+||+.+++|+++..+
T Consensus 269 dGlatii~glfG~~-p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~ 347 (428)
T PRK10720 269 NGLSTVISGFFGST-PNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGAS 347 (428)
T ss_pred hhHHHHHHHhcCCC-CccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhh--hccccCCCcceeeehHHHHhhhhhhHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhcc
Q 009837 404 GLSFL--QFTNMNSMRNLFITGVALFLGLSVPEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNTL 481 (524)
Q Consensus 404 Gi~~l--~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~~ 481 (524)
|+|.+ +++|++++||.+|+|+++.+|++.... .++.++.+|+..|+++|++||+++
T Consensus 348 Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~----------------------~~~~~~~~gi~~g~~~ai~Lnlll 405 (428)
T PRK10720 348 GIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV----------------------NIGAAELKGMALATIVGIGLSLIF 405 (428)
T ss_pred HHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH----------------------HHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999 789998899999999999999986421 156788899999999999999999
Q ss_pred CCCCCccccC
Q 009837 482 DYKDSAKDRG 491 (524)
Q Consensus 482 ~~~~~~~~~g 491 (524)
|. .||.|+
T Consensus 406 ~~--~~~~~~ 413 (428)
T PRK10720 406 KL--ISKLRP 413 (428)
T ss_pred cc--cccccC
Confidence 93 344444
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=5.5e-65 Score=540.85 Aligned_cols=392 Identities=29% Similarity=0.488 Sum_probs=350.5
Q ss_pred CCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCC---cceEEecchhhHH
Q 009837 27 NPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTR---LPTVVGGSYAFMV 103 (524)
Q Consensus 27 ~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~r---lPiv~Gpsfa~~~ 103 (524)
|||+++++++|+||+++|+++++++|++++.+. +|++|+++++|++++++|++|++|++..++ +|.++|+||+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 789999999999999999999999999999999 999999999999999999999999985433 6999999999999
Q ss_pred HHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhh--h-HHHHHHHhcCcchHHHHHHHHHhHhhhhhcc
Q 009837 104 PIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYS--Q-LWAICSRFFSPLGMVPVISLVGFGLFDRGFP 180 (524)
Q Consensus 104 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~--g-l~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~ 180 (524)
+...+... +++++++|+++++|+++++++.+ + .++|++|+|||.|+|.++++||+++.+.+++
T Consensus 80 ~~~~~~~~--------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~ 145 (415)
T TIGR00801 80 PMIAIGSG--------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVK 145 (415)
T ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHH
Confidence 88766532 57999999999999999999975 3 3578999999999999999999999999887
Q ss_pred ccc--------------chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 009837 181 VVG--------------RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLT 246 (524)
Q Consensus 181 ~~~--------------~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~ 246 (524)
+.+ .++.+++.++++++++.++.|+ ++|++++|+|+++||++++.+|.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~----------- 207 (415)
T TIGR00801 146 MAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI----------- 207 (415)
T ss_pred HhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 642 1245677777766666665554 57789999999999999998873
Q ss_pred ccccccCccCcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhch
Q 009837 247 QMNCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGI 326 (524)
Q Consensus 247 ~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl 326 (524)
+|+++ +.++||+++|.+++|+ |+||+..+..+++++++.++|++|+++++++.+++++++++++||++.+||+
T Consensus 208 -----~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl 280 (415)
T TIGR00801 208 -----VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGL 280 (415)
T ss_pred -----ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhH
Confidence 35543 5678999999888887 7999999999999999999999999999999998766447889999999999
Q ss_pred HHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhH
Q 009837 327 GILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLS 406 (524)
Q Consensus 327 ~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~ 406 (524)
+|+++|+||++ ++|+|+||+|+++.||++||++.+++|+++++++++||++++++.||.||+||+++++|+++..+|+|
T Consensus 281 ~~i~aglfG~~-p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~ 359 (415)
T TIGR00801 281 ATLLAGLFGGF-PNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIR 359 (415)
T ss_pred HHHHHHhcCCC-CCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 78889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCcceeeehHHHHhhhhh---hHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhc
Q 009837 407 FLQFTNMNSMRNLFITGVALFLGLSV---PEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNT 480 (524)
Q Consensus 407 ~l~~v~~~~~rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~ 480 (524)
.+.+.|+|++||.+++|+|+.+|+++ |++++++ | +++||+++|+++|++||++
T Consensus 360 ~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~~----------------p-----~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 360 ILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGNF----------------P-----LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred HHHhCccCcccceehHHHHHHHHHHHhccHHHHhhC----------------c-----hhcccHHHHHHHHHHHhcC
Confidence 99999998799999999999999997 6666543 4 7899999999999999974
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.3e-64 Score=537.47 Aligned_cols=388 Identities=31% Similarity=0.521 Sum_probs=348.1
Q ss_pred HHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHH----HhCCCcceEEecchhhHHHHHHHHhCC
Q 009837 37 GFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQT----LFGTRLPTVVGGSYAFMVPIISIIHDP 112 (524)
Q Consensus 37 GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~----~~G~rlPiv~Gpsfa~~~~~~~i~~~~ 112 (524)
|+||+++|+++++++|++++++.|+|++|+.+++|++++++|++|++|+ .+|+|+|+++|||+++++++..+...
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999998 46899999999999999888766432
Q ss_pred CcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhccccc---------
Q 009837 113 SLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVVG--------- 183 (524)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~~--------- 183 (524)
++|++++|+++++|++++++| ++++|++|+|||.|+|.++++||+++.+.++++..
T Consensus 80 -------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~ 144 (406)
T TIGR03173 80 -------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFG 144 (406)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Confidence 579999999999999999999 46799999999999999999999999988775431
Q ss_pred --chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCccCcCCCC
Q 009837 184 --RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKANLISSA 261 (524)
Q Consensus 184 --~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~~~i~~a 261 (524)
+++.+++.++++++++.++.| +++|++++|+++++||++++.+|. .|++. +.++
T Consensus 145 ~~~~~~l~l~~l~~~il~~~~~~-------~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~~ 200 (406)
T TIGR03173 145 SPQNLGLALLTLVIILLLNRFGK-------GFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAEA 200 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh-------hHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hccC
Confidence 134567666666655544443 457789999999999999998873 35443 5667
Q ss_pred CCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCc
Q 009837 262 PWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSS 341 (524)
Q Consensus 262 ~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t 341 (524)
+|+.+|.+++|+.|+||+..+..++.++++.++|++|+.+++++..+++. +++++||++.+||++|+++|+||++ ++|
T Consensus 201 ~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~-~~~~~~~~l~~~Gi~~i~aglfG~~-p~t 278 (406)
T TIGR03173 201 PWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRPI-TEKDLAGGLRADGLGSALGGLFNTF-PYT 278 (406)
T ss_pred CeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhccchHHhccHHHHHHHHhCCC-CCc
Confidence 99999988889999999999999999999999999999999999987654 4678999999999999999999997 688
Q ss_pred ccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhccccCCCcceee
Q 009837 342 VSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQFTNMNSMRNLFI 421 (524)
Q Consensus 342 ~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~i 421 (524)
+|+||+|+++.||++||++.+++|+++++++++||++++++.||.||+||+++++|+++..+|+|.+++.|+||+||.+|
T Consensus 279 ~~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i 358 (406)
T TIGR03173 279 SFSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLI 358 (406)
T ss_pred chhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceehh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred ehHHHHhhhhh---hHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhccC
Q 009837 422 TGVALFLGLSV---PEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNTLD 482 (524)
Q Consensus 422 vg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~~~ 482 (524)
+|+++.+|++. |++++++ |++++++++||+++|+++|++||+++|
T Consensus 359 ~g~~~~~g~~~~~~p~~~~~~----------------p~~~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 359 VAVSLGLGLGPTVVPEFFSQL----------------PAWAQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred hHHHHHHHHHHHhhHHHHHHC----------------hHHHHHHHhCcHHHHHHHHHHHHhhcC
Confidence 99999999974 7777764 899999999999999999999999986
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=8.1e-61 Score=505.61 Aligned_cols=371 Identities=33% Similarity=0.560 Sum_probs=281.5
Q ss_pred hHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-hCCCcceEEecchhhHHHHHHHH
Q 009837 31 GEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL-FGTRLPTVVGGSYAFMVPIISII 109 (524)
Q Consensus 31 ~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~-~G~rlPiv~Gpsfa~~~~~~~i~ 109 (524)
+|++++|+||+++|+++++++|.++++++|+ +++..++++++++++|++|++|++ +|+|+|+++|+|+.++.......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 5899999999999999999999999999999 778889999999999999999999 89999999999999987332221
Q ss_pred hCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccccch----
Q 009837 110 HDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVVGRC---- 185 (524)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~~~~---- 185 (524)
..+ ..+.+++++++|+++++|+++++++++++++|++|+|||.|.|.++++||+++.+.++++.+..
T Consensus 80 g~~---------~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~ 150 (389)
T PF00860_consen 80 GMA---------ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP 150 (389)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B
T ss_pred ccc---------cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc
Confidence 110 1134789999999999999999999999999999999999999999999999999988764321
Q ss_pred ----------hhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCcc
Q 009837 186 ----------VEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKA 255 (524)
Q Consensus 186 ----------~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~ 255 (524)
..++..+++..+.++.+. ++++|++++++|+++||++++.+|. +|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~----------------~~~~ 207 (389)
T PF00860_consen 151 DGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGV----------------VDFS 207 (389)
T ss_dssp TT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHH----------------TTSS
T ss_pred cccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhcccc----------------cccC
Confidence 233444444444444443 4567889999999999999999984 3444
Q ss_pred CcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhc
Q 009837 256 NLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFG 335 (524)
Q Consensus 256 ~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG 335 (524)
+.+.++||+++|++++|++|+|+++.++.++..+++.++|++|++.++++.++++++++++++|++.+||++|+++|+||
T Consensus 208 ~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G 287 (389)
T PF00860_consen 208 PSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFG 287 (389)
T ss_dssp H-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhc
Confidence 22567899999999999999999999999999999999999999999999999877668999999999999999999999
Q ss_pred CCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhccccCC
Q 009837 336 TLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQFTNMNS 415 (524)
Q Consensus 336 ~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~v~~~~ 415 (524)
+. ++|+|+||+|.++.||++|||+...+++++++++++||+++++++||.||+||++++++|+++.+|+|++++.|+||
T Consensus 288 ~~-~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~ 366 (389)
T PF00860_consen 288 TS-PTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDS 366 (389)
T ss_dssp ----EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-S
T ss_pred CC-CCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCc
Confidence 95 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeehHHHHhhhhhhHH
Q 009837 416 MRNLFITGVALFLGLSVPEY 435 (524)
Q Consensus 416 ~rn~~ivg~sl~~Gl~~p~~ 435 (524)
+||.+++++++.+|++++.+
T Consensus 367 ~r~~~iv~~~l~~g~~i~~~ 386 (389)
T PF00860_consen 367 ARNAFIVGLSLPLGLSIAFG 386 (389)
T ss_dssp HHHHHHHHHHHHHHHH----
T ss_pred cccHHHHHHhHHHHHHHhcc
Confidence 99999999999999998754
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.97 E-value=3e-28 Score=254.04 Aligned_cols=383 Identities=15% Similarity=0.162 Sum_probs=275.3
Q ss_pred ccCcccccCCCCC-hhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEE
Q 009837 17 LQGLEYCIDSNPS-WGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVV 95 (524)
Q Consensus 17 ~~~~~y~~~d~pp-~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~ 95 (524)
.-+..|+++|+.+ .++|+++|++++++|.|...++|.+++++ |+|. ..+..++++.++++|++++++ +|+|+.+
T Consensus 5 ~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~~---~av~~AT~l~a~~gs~~mgl~-An~P~al 79 (436)
T COG2252 5 DLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMPV---GAVFVATCLAAAIGSIAMGLY-ANLPIAL 79 (436)
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCCc---hhHHHHHHHHHHHHHHHHHHH-HcCchhh
Confidence 3467899999986 89999999999999999999999999875 6773 566789999999999999998 8999999
Q ss_pred ecc---hhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcch-------HHH
Q 009837 96 GGS---YAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLG-------MVP 165 (524)
Q Consensus 96 Gps---fa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V-------~G~ 165 (524)
+|. .+|.... +...++ ..||+++++++++|+++++++++|+++|++|.+|... +|.
T Consensus 80 apgmglnAfFaft--vv~~~g------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 80 APGMGLNAFFAFT--VVLGMG------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred cchhhHHHHHHHH--HHHhcC------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 994 3333222 232222 5799999999999999999999999999999999876 566
Q ss_pred HHHHHHhHhhhhhccc------cc---c-hhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHh
Q 009837 166 VISLVGFGLFDRGFPV------VG---R-CVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTA 235 (524)
Q Consensus 166 ~v~lIGl~l~~~~~~~------~~---~-~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~ 235 (524)
++++||+.....-+.+ +| + ...+++..+++++++ ..||+ ..+++++|+..+++++.+|.
T Consensus 146 Fia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~ 214 (436)
T COG2252 146 FIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGI 214 (436)
T ss_pred HHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhcc
Confidence 6777766533332211 12 2 234555555555544 44443 57899999999999999984
Q ss_pred cCCCCCCCCccccccccCccCcCCCCCCccCcccccccCC--ccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCC-
Q 009837 236 SGAYKHRPDLTQMNCRTDKANLISSAPWIKIPYPLQWGAP--TFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPP- 312 (524)
Q Consensus 236 ~~~~~~~~~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P--~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~- 312 (524)
... +.+.....|.. .|...+.+.. ...++.+...+...++..+|++|+..++++.++..++
T Consensus 215 ~~~---------------~~~~~~~~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~ 278 (436)
T COG2252 215 DVH---------------FGGLVGAPPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKN 278 (436)
T ss_pred ccc---------------ccccccCCCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCC
Confidence 210 00000111100 0111122211 1123445566889999999999999999999876432
Q ss_pred -CCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHH
Q 009837 313 -PAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAA 391 (524)
Q Consensus 313 -~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg 391 (524)
+.++.+|.+.+|++++.+++++|+. ++|+|.|+...++..|.+.-...+.+-.+++.+ |+ +++...+|..+.++
T Consensus 279 g~~~~~~~al~~D~v~t~~ga~~GtS-~~t~yIESaaGva~GgrTGltavv~g~lFl~~l-f~---~Pl~~~vP~~Atap 353 (436)
T COG2252 279 GKMPRIGKALLADSVATVVGALFGTS-TVTAYIESAAGVAAGGRTGLTAVVTGLLFLLSL-FF---SPLAALVPGYATAP 353 (436)
T ss_pred CCccccchHHHHhHHHHHHHHhcCCc-chhhhhhcccccccccccccHHHHHHHHHHHHH-HH---HHHHHhCcHhhhhH
Confidence 2479999999999999999999995 799999999988876655555555555555553 33 34789999999999
Q ss_pred HHHHHHHHHHHHHhHhhhccccCCCcceeeehHHHHhhhhhhHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHH
Q 009837 392 VYCVLFGLVASVGLSFLQFTNMNSMRNLFITGVALFLGLSVPEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVAL 471 (524)
Q Consensus 392 ~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~ 471 (524)
++++ .|.++..+ ++++||+|..+. +|.++.... +| +.+-..+|++.|.
T Consensus 354 aLi~-vG~lM~~~---v~~id~~d~~ea------------~PaF~tiv~--------------mp--lTySIa~Gia~Gf 401 (436)
T COG2252 354 ALII-VGALMLSS---VKQIDWSDFTEA------------VPAFLTIVM--------------MP--LTYSIADGIAFGF 401 (436)
T ss_pred HHHH-HHHHHHhh---hccCCchhhhhh------------hHHHHHHHH--------------HH--HHHHHHhhHHHHH
Confidence 9887 46555544 568899875442 355444321 23 4566789999999
Q ss_pred HHHHHHhhccC
Q 009837 472 IVAVFLDNTLD 482 (524)
Q Consensus 472 l~ailLn~~~~ 482 (524)
+.+.+++....
T Consensus 402 i~y~i~k~~~g 412 (436)
T COG2252 402 ISYVILKVFTG 412 (436)
T ss_pred HHHHHHHHHhh
Confidence 99999988554
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.95 E-value=1.1e-25 Score=234.20 Aligned_cols=315 Identities=17% Similarity=0.248 Sum_probs=241.3
Q ss_pred HHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhC
Q 009837 32 EAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHD 111 (524)
Q Consensus 32 ~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~ 111 (524)
..+..|+-.+++-+.+.+++-+-.+++.|+|++|.++|+++.++.+|++|++|++. +|+|++++||... ...+ +...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awStPG-aAll-~~~~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSAPG-AALL-VTGF 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCchH-HHHH-HHhc
Confidence 57889999999999999999999999999999999999999999999999999996 7999999999332 2222 2222
Q ss_pred CCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccccchhhhHHH
Q 009837 112 PSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVVGRCVEIGIP 191 (524)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~~~~~~i~l~ 191 (524)
.+ ++++++.|+.+++|++.+++|++|.++|++|++|+.+.+.+++.+.+...-..+....+.+.++..
T Consensus 99 ~~------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~ 166 (395)
T TIGR00843 99 PG------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFS 166 (395)
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 579999999999999999999999999999999999999999887665543333333344444433
Q ss_pred HHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCccCcCCCCCCccCccccc
Q 009837 192 MLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKANLISSAPWIKIPYPLQ 271 (524)
Q Consensus 192 ~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~~~i~~a~~~~~P~~~~ 271 (524)
.++..+ ..| |+.+++++++++++|.++++..|.. |.++ ... . +..| .
T Consensus 167 mll~~l----~~~-------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p---~ 213 (395)
T TIGR00843 167 MLLCWL----ASK-------AFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP---Q 213 (395)
T ss_pred HHHHHH----HHH-------HhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---e
Confidence 322221 122 3456799999999999999888632 2211 111 1 2223 5
Q ss_pred ccCCccCHHHHHHH-HHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhh
Q 009837 272 WGAPTFDAGHAFGM-MAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLL 350 (524)
Q Consensus 272 fg~P~F~~~~i~~~-~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i 350 (524)
|..|+||+...+.. ++.+++++....-.-.++.|.+++++ +.|+-+.++|++|+++++||+++ -|.+.+
T Consensus 214 ~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~ApfGg~~------~nlaai 283 (395)
T TIGR00843 214 FIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFAGGIS------IGIAAI 283 (395)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhccCCch------hhhhHH
Confidence 67899999888875 79999999877666678888888654 36999999999999999999973 244333
Q ss_pred hhcC---------CCcchh-HHHHHHHHHHHHHh-hHHHHHHHhCChhHHHH-HHHHHHHHHHHHH
Q 009837 351 GSTR---------VGSRRV-IQISAGFMIFFSML-GKFGAFFASIPFTIFAA-VYCVLFGLVASVG 404 (524)
Q Consensus 351 ~~Tg---------~~SR~~-~~~~g~~lillg~~-pk~~~lia~IP~~Vlgg-~li~~fg~i~~~G 404 (524)
..+- -..||. .+.+|++.+++|++ +.+..+++.+|.+.+.. +.+.+++.+..+=
T Consensus 284 taAic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~l 349 (395)
T TIGR00843 284 TAAICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGNI 349 (395)
T ss_pred hHHHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 3322 234554 78899999999999 78999999999999998 4777888886553
No 11
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.93 E-value=1.8e-23 Score=214.15 Aligned_cols=314 Identities=20% Similarity=0.262 Sum_probs=245.4
Q ss_pred HHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhC
Q 009837 32 EAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHD 111 (524)
Q Consensus 32 ~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~ 111 (524)
.++..|+-.+++-+.+.+++-+-.+++.|++++|+.+|+.+..+.+|+.++..++. +|.|++.++|.... ++.+...
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWStPGa--AlL~~~~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWSTPGA--ALLATSL 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcchHHH--HHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999995 99999999986432 2222222
Q ss_pred CCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccccchhhhHHH
Q 009837 112 PSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVVGRCVEIGIP 191 (524)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~~~~~~i~l~ 191 (524)
.+ ++++++.|+++++|++.++.|++|+++|+.|.+|+.+...+++.+-+...-..++.+.+++.+...
T Consensus 83 ~~------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ 150 (378)
T PF03594_consen 83 PG------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGP 150 (378)
T ss_pred cC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 689999999999999999999999999999999999998888877444333333334455656555
Q ss_pred HHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCccCcCCCCCCccCccccc
Q 009837 192 MLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKANLISSAPWIKIPYPLQ 271 (524)
Q Consensus 192 ~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~~~i~~a~~~~~P~~~~ 271 (524)
.++..++. |+ +.++++++.++++|.++++..|. .+... .. -++..| .
T Consensus 151 ml~~~l~~----~r-------~~pr~av~~al~~g~~~a~~~g~----------------~~~~~-~~--~~~~~p---~ 197 (378)
T PF03594_consen 151 MLAVFLLA----RR-------FSPRYAVLAALVAGVAVAALTGQ----------------LHPSA-LQ--LSLAHP---V 197 (378)
T ss_pred HHHHHHHH----HH-------HcchhHHHHHHHHHHHHHHhcCC----------------CCccc-cc--ccccee---E
Confidence 54444332 32 34568999999999999887653 22221 11 122233 6
Q ss_pred ccCCccCHHHHHHH-HHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhh
Q 009837 272 WGAPTFDAGHAFGM-MAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLL 350 (524)
Q Consensus 272 fg~P~F~~~~i~~~-~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i 350 (524)
|..|+||+++++.+ +|++++++......-.++-|..|+++ +.|+-+...|++|++.+.||++ +-|.+.+
T Consensus 198 ~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~----p~~~~~~~tGl~s~l~ApfGg~------~~nlAai 267 (378)
T PF03594_consen 198 FTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQP----PVNPLITVTGLASLLAAPFGGH------AVNLAAI 267 (378)
T ss_pred EECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCC----CchHHHHHHHHHHHHHhhhchh------hhHHHHH
Confidence 77899999999987 89999999987777788888888744 6799999999999999999997 3566655
Q ss_pred hhcCCC---------cchh-HHHHHHHHHHHHHhh-HHHHHHHhCChhHHHH-HHHHHHHHHHHH
Q 009837 351 GSTRVG---------SRRV-IQISAGFMIFFSMLG-KFGAFFASIPFTIFAA-VYCVLFGLVASV 403 (524)
Q Consensus 351 ~~Tg~~---------SR~~-~~~~g~~lillg~~p-k~~~lia~IP~~Vlgg-~li~~fg~i~~~ 403 (524)
...-|. .||. .+.+|++.+++|++. .+..++...|.+.+.. +.+.+++.+..+
T Consensus 268 taAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~s 332 (378)
T PF03594_consen 268 TAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGGS 332 (378)
T ss_pred HHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 543333 3665 788999999999994 7889999999999988 467778877654
No 12
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-22 Score=221.20 Aligned_cols=319 Identities=19% Similarity=0.258 Sum_probs=231.7
Q ss_pred hhHHhHHHHHHHHHHHhhHhhHHHHHhh--hcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHH
Q 009837 30 WGEAIALGFQHYILALGTAVMIPSFLVP--LMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIIS 107 (524)
Q Consensus 30 ~~~~~~~GlQh~l~m~~~~i~~P~ila~--a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~ 107 (524)
+++.+++|+.-... ++|..++. +.|.|+ .+.++++-++.++.++||.+.-.+.||..+....+..
T Consensus 21 l~~Dl~AGltva~v------alP~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVAAV------ALPLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHHHH------HhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 66789999886654 44655553 368997 4899999999999999988888899997665544444
Q ss_pred HHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccc-c---
Q 009837 108 IIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVV-G--- 183 (524)
Q Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~-~--- 183 (524)
+.++.. .++++.++-+.+++|++++++|++|+ +++.+++|+.|+-.++..||+.++-.+++.+ |
T Consensus 88 ~i~~~~-----------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 88 VIASLV-----------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 443110 16899999999999999999999998 9999999998888898999987775544321 0
Q ss_pred ------------------ch---hhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 009837 184 ------------------RC---VEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHR 242 (524)
Q Consensus 184 ------------------~~---~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~ 242 (524)
.+ +.+++.++.+++ +.+++. .|.++.++++++++.+++.++....
T Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~----~~~~~~------~~~P~~liaiv~~t~i~~~~~~~~~---- 221 (554)
T COG0659 156 KVSGFWAKVSALFTVLLTINLATLLLGLLTLAILL----FLPRLT------PRIPSPLIALVLGTLIVWIFPLDSL---- 221 (554)
T ss_pred cccchHHHHHHHHHhcccccHHHHHHHHHHHHHHH----Hccchh------hhCCcHHHHHHHHHHHHHHhcCCch----
Confidence 01 123333333322 333321 2457799999999999998874210
Q ss_pred CCccccccccCccCcCCCCCCccCcccccccCCccCHHHHH----HHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCC
Q 009837 243 PDLTQMNCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHAF----GMMAAVLVSLIESTGAYKAASRLASATPPPAHVLS 318 (524)
Q Consensus 243 ~~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~----~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~ 318 (524)
+.+ +...+.|. .+| +|+.|.++++.+. ..+.++++.++|++.+..+.++..++ +++.|
T Consensus 222 --------~~G--~i~~~lp~-~~~---~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~n 283 (554)
T COG0659 222 --------RYG--EIPGSLPS-GLP---HFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSN 283 (554)
T ss_pred --------hcc--cCcccCCc-CCC---cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCC
Confidence 011 11111111 112 4556666655443 45788999999999999999998765 45789
Q ss_pred cchhhhchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHH-HH
Q 009837 319 RGIGWQGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCV-LF 397 (524)
Q Consensus 319 r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~-~f 397 (524)
|+++++|++|+++|+||++|.+.+++. ......+|.+||.+.++++++++++-++ ++.++..||.+++++++++ .+
T Consensus 284 rELiaqGiaNi~sglfgg~p~~g~~sr-S~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v~~ 360 (554)
T COG0659 284 RELIAQGIANIASGLFGGIPATGSISR-SAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILVGW 360 (554)
T ss_pred HHHHHhhHHHHHHHHhCCccccchhHH-HHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999999999988888854 4556678999999999999987776554 6779999999999998776 66
Q ss_pred HHHHHHHhHhh
Q 009837 398 GLVASVGLSFL 408 (524)
Q Consensus 398 g~i~~~Gi~~l 408 (524)
+++....++.+
T Consensus 361 ~l~~~~~~~~~ 371 (554)
T COG0659 361 GLLDWSLLKPL 371 (554)
T ss_pred HhccHHHHHHH
Confidence 66666666553
No 13
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=5e-22 Score=199.07 Aligned_cols=318 Identities=19% Similarity=0.246 Sum_probs=247.0
Q ss_pred hHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHh
Q 009837 31 GEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIH 110 (524)
Q Consensus 31 ~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~ 110 (524)
.+++..|++.+++-+++..++-+-.+++.|.+++|+++|+.+..+.+|+.|+..++. +|.|++.++|.... ++ +..
T Consensus 20 p~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTPG~--al-l~a 95 (402)
T COG3135 20 PQTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTPGA--AL-LVA 95 (402)
T ss_pred chhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCccH--HH-HHh
Confidence 367899999999999999988888888999999999999999999999999999995 99999999986543 22 222
Q ss_pred CCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccccchhhhHH
Q 009837 111 DPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVVGRCVEIGI 190 (524)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~~~~~~i~l 190 (524)
+.+ .+++.++.|+++++|++.++.|.+|.++|+++.+||.+...++..|=+...-.+++.+..++.+.+
T Consensus 96 sl~-----------g~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~l 164 (402)
T COG3135 96 SLG-----------GLSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLVL 164 (402)
T ss_pred ccC-----------CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHHH
Confidence 211 168999999999999999999999999999999999998888776633333333344445665655
Q ss_pred HHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCccCcCCCCCCccCcccc
Q 009837 191 PMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKANLISSAPWIKIPYPL 270 (524)
Q Consensus 191 ~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~~~i~~a~~~~~P~~~ 270 (524)
..++..++. |. +-++++++..+++|..++...|.. +.. ......+.|
T Consensus 165 pmv~~~ll~----r~-------f~pr~aV~aalvvgv~va~~~G~~----------------~~~---~~~~~~~~p--- 211 (402)
T COG3135 165 PMVLAYLLA----RV-------FAPRYAVIAALVVGVLVAALLGDL----------------HTA---LVALEISTP--- 211 (402)
T ss_pred HHHHHHHHH----HH-------cCchHHHHHHHHHHHHHHHHhCcc----------------ccc---ccccccCcc---
Confidence 554443333 32 234699999999999999988732 111 112223445
Q ss_pred cccCCccCHHHHHHH-HHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhh
Q 009837 271 QWGAPTFDAGHAFGM-MAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGL 349 (524)
Q Consensus 271 ~fg~P~F~~~~i~~~-~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~ 349 (524)
.|-.|+|++.+++.. ++++++.+......-.|+-|.+|+++ +.+--+.+.|+.+++++.||++ +-|.+.
T Consensus 212 ~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~p----p~~pl~~~TGl~sll~ApfG~~------t~nLaA 281 (402)
T COG3135 212 TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQP----PPSPLIVATGLASLLSAPFGGH------TVNLAA 281 (402)
T ss_pred eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCCC----CCchHHHHhHHHHHHhcccccc------eecHHH
Confidence 788899999999986 79999999988888888999888744 4577899999999999999986 356776
Q ss_pred hhhcCCCc---------chh-HHHHHHHHHHHHHhh-HHHHHHHhCChhHHHH-HHHHHHHHHHHHHhH
Q 009837 350 LGSTRVGS---------RRV-IQISAGFMIFFSMLG-KFGAFFASIPFTIFAA-VYCVLFGLVASVGLS 406 (524)
Q Consensus 350 i~~Tg~~S---------R~~-~~~~g~~lillg~~p-k~~~lia~IP~~Vlgg-~li~~fg~i~~~Gi~ 406 (524)
+...-|.+ ||. ...+|++.+++|+|. .+.+++...|.+.+.. +.+.+.+.+..+-.+
T Consensus 282 ItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~~l~~ 350 (402)
T COG3135 282 ITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGNSLQA 350 (402)
T ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655543 555 788999999999994 7999999999999887 466666776554333
No 14
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.88 E-value=7.8e-20 Score=202.15 Aligned_cols=335 Identities=18% Similarity=0.176 Sum_probs=222.0
Q ss_pred hhHHhHHHHHHHHHHHhhHhhHHHHHhhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHH
Q 009837 30 WGEAIALGFQHYILALGTAVMIPSFLVPL--MGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIIS 107 (524)
Q Consensus 30 ~~~~~~~GlQh~l~m~~~~i~~P~ila~a--~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~ 107 (524)
+...+.+|+.-.+. .+|..++.+ .|+++ ...+.++.+..++.++||+..-++.||..+....+..
T Consensus 14 l~~Di~aGltv~~~------~iP~~~ayA~laglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 14 FKGDLMAGLTVGIL------LIPQAMAYAILAGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred hhhHHHHHHHHHHH------HHHHHHHHHHHcCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 67889999886654 456655544 48997 4789999999999999999999999997654333333
Q ss_pred HHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccc-----
Q 009837 108 IIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVV----- 182 (524)
Q Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~----- 182 (524)
+...++..+..+ ....+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++...++.+
T Consensus 81 ~v~~~~~~~~~~-----~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~ 154 (563)
T TIGR00815 81 VIARVGLQYLFD-----CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISI 154 (563)
T ss_pred HHHHhcCCCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444432111110 02356666889999999999999997 9999999999988899989886663322211
Q ss_pred ------------------cc----hhhhHHHHHHHHHHHHhhhhhhhcccccc--hhhhHHHHHHHHHHHHHHHHHhcCC
Q 009837 183 ------------------GR----CVEIGIPMLILFIAFSQYLKNFKTRHLPI--MERFALLITITVIWAYAHLLTASGA 238 (524)
Q Consensus 183 ------------------~~----~~~i~l~~l~l~i~~~~~~~~~~~~~~~~--lr~~aiLigiivG~i~a~~lg~~~~ 238 (524)
.+ +|......++.+ ++....|++.++.++. ...+..|+.+++++++.+.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~-~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~-- 231 (563)
T TIGR00815 155 FNTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLL-LFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHK-- 231 (563)
T ss_pred CCCCCChHHHHHHHHHHhhhccccchHHHHHHHHHH-HHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccC--
Confidence 01 222111111111 1112234432221111 22356789999998887766321
Q ss_pred CCCCCCccccccccCccCcCCCCCCccCcccccccCCccCHHHH----HHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCC
Q 009837 239 YKHRPDLTQMNCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHA----FGMMAAVLVSLIESTGAYKAASRLASATPPPA 314 (524)
Q Consensus 239 ~~~~~~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i----~~~~~~~lv~~~esig~~~av~~~~~~~~~~~ 314 (524)
. ..+...+.+.. ++| .+..|.+|++.+ ...+.+++++++|++...++.++..+++
T Consensus 232 --~--------~~~~~~g~ip~----g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~---- 290 (563)
T TIGR00815 232 --K--------QGVSILGHIPS----GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYK---- 290 (563)
T ss_pred --C--------CCeEEEeecCC----CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 0 01111111111 223 334456665443 3457899999999999999998876643
Q ss_pred cCCCcchhhhchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHH
Q 009837 315 HVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYC 394 (524)
Q Consensus 315 ~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li 394 (524)
.+.||++.++|++|+++|+||++|.+.+++ ...+...+|.++|.+.++++++++++.++ +..++..+|.++++++++
T Consensus 291 ~d~n~El~a~G~~N~~~~~fg~~p~~~s~s-rs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili 367 (563)
T TIGR00815 291 IDANQELVAQGIANIVGSFFSCYPATGSLS-RTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIII 367 (563)
T ss_pred CCCcHHHHHhhHHHHHHHHhCccCCCCcch-HHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHH
Confidence 468999999999999999999997666664 56677789999999999999887777655 567899999999999988
Q ss_pred H-HHHHHHHHHhHhhhc
Q 009837 395 V-LFGLVASVGLSFLQF 410 (524)
Q Consensus 395 ~-~fg~i~~~Gi~~l~~ 410 (524)
+ .+.++....++.+.+
T Consensus 368 ~~~~~l~~~~~~~~~~~ 384 (563)
T TIGR00815 368 SAVRGLIDYKELYKLWK 384 (563)
T ss_pred HHHhcccCHHHHHHHHc
Confidence 7 334333333333333
No 15
>PRK11660 putative transporter; Provisional
Probab=99.86 E-value=5.4e-19 Score=195.63 Aligned_cols=317 Identities=17% Similarity=0.191 Sum_probs=208.9
Q ss_pred ChhHHhHHHHHHHHHHHhhHhhHHHHHhhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHH
Q 009837 29 SWGEAIALGFQHYILALGTAVMIPSFLVPL--MGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPII 106 (524)
Q Consensus 29 p~~~~~~~GlQh~l~m~~~~i~~P~ila~a--~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~ 106 (524)
.+...+.+|+.-.+. .+|..++.+ .|+++ +..++++-+++++.+++|+..-++.||+........
T Consensus 28 ~l~~D~iAGltv~~~------~iPq~mayA~lag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~ 94 (568)
T PRK11660 28 RFTRDLIAGITVGII------AIPLAMALAIASGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILY 94 (568)
T ss_pred hhhHHHHHHHHHHHH------HHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHH
Confidence 367889999986654 455555544 58887 468999999999999999999999999765422222
Q ss_pred HHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccc-c--
Q 009837 107 SIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVV-G-- 183 (524)
Q Consensus 107 ~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~-~-- 183 (524)
.+.++ ++++.+..+.+++|++++++|++|+ +++.+++|..|+..++..+|+.+...+++.+ |
T Consensus 95 ~~~~~--------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~ 159 (568)
T PRK11660 95 PVSQQ--------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQ 159 (568)
T ss_pred HHHHH--------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22221 3566677789999999999999997 9999999998888888888885554332211 0
Q ss_pred ---------------------chh---hhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCC
Q 009837 184 ---------------------RCV---EIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAY 239 (524)
Q Consensus 184 ---------------------~~~---~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~ 239 (524)
.+| .+++.+++++++ .+++. .|.+..++++++++++++.++..+.
T Consensus 160 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~----~~~~~------~~iP~~li~iiv~t~~~~~~~~~~~- 228 (568)
T PRK11660 160 MAHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLIL----WPRLK------IRLPGHLPALLAGTAVMGVLNLLGG- 228 (568)
T ss_pred CCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH----HHhhc------ccCchHHHHHHHHHHHHHHHhccCC-
Confidence 012 233344333332 23321 1246678999999999988874310
Q ss_pred CCCCCccccccccC--ccCcC--CCCCCccCcccc-cccCC-----------ccCHHHH----HHHHHHHHHHHHHhHhH
Q 009837 240 KHRPDLTQMNCRTD--KANLI--SSAPWIKIPYPL-QWGAP-----------TFDAGHA----FGMMAAVLVSLIESTGA 299 (524)
Q Consensus 240 ~~~~~~~~~~~~~d--~~~~i--~~a~~~~~P~~~-~fg~P-----------~F~~~~i----~~~~~~~lv~~~esig~ 299 (524)
+.+ .+. +...+ ....+ .+|..+ ++..| .++++.+ ...+.++++..+|++..
T Consensus 229 ~v~--------~vg~~~~~~~~~g~~~~-~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~ 299 (568)
T PRK11660 229 HVA--------TIGSRFHYVLADGSQGN-GIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLC 299 (568)
T ss_pred Cce--------eeccccccccccccccc-CCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00000 00000 112100 11112 2355443 34567889999999988
Q ss_pred HHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHH
Q 009837 300 YKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGA 379 (524)
Q Consensus 300 ~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~ 379 (524)
..+.++..++ +.+.||++.++|++|+++|+||++|.++++ ....+...+|.++|.+.+++++++++.-++ +..
T Consensus 300 ~~~~~~~~~~----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll~--l~~ 372 (568)
T PRK11660 300 AVVLDGMTGT----KHSANSELVGQGLGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALLV--LAP 372 (568)
T ss_pred HHHHHHhcCC----CCCCcHHHHHHhHHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHH
Confidence 8888777654 347899999999999999999998655544 445677788999999988888776554322 445
Q ss_pred HHHhCChhHHHHHHHH-HHHHH
Q 009837 380 FFASIPFTIFAAVYCV-LFGLV 400 (524)
Q Consensus 380 lia~IP~~Vlgg~li~-~fg~i 400 (524)
++..||.+++++++++ .+.++
T Consensus 373 ll~~iP~~vLa~ili~~~~~m~ 394 (568)
T PRK11660 373 LLSYLPLSAMAALLLMVAWNMS 394 (568)
T ss_pred HHHhCcHHHHHHHHHHHHHHhh
Confidence 8999999999999886 33433
No 16
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.8e-13 Score=151.83 Aligned_cols=325 Identities=17% Similarity=0.208 Sum_probs=208.5
Q ss_pred hHhhHHHHHhhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHH-HHhCCCcccccchhhh
Q 009837 47 TAVMIPSFLVPL--MGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIIS-IIHDPSLASIEDNHVR 123 (524)
Q Consensus 47 ~~i~~P~ila~a--~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~-i~~~~~~~~~~~~~~~ 123 (524)
+++.+|.-++.+ +|+++ ...++.+-++.++..+||+..++..||-.. +.-+.. +.+.. ..... +...
T Consensus 91 g~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~av-~sLmv~~~v~~~-v~~~~-~~~~ 160 (665)
T KOG0236|consen 91 GSLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFAV-VSLMVGTVVSQV-VLSEA-PSND 160 (665)
T ss_pred eeeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHHH-HHHHHHHHHHHH-HhccC-CCcC
Confidence 467788888766 48886 599999999999999999999999998422 111111 00000 00000 0000
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhc------cccc--------------
Q 009837 124 FLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGF------PVVG-------------- 183 (524)
Q Consensus 124 ~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~------~~~~-------------- 183 (524)
....++.+....+++|++|+++|++|+ |.+.+++|..++..+....++.+.-.++ +++.
T Consensus 161 ~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~ 239 (665)
T KOG0236|consen 161 IATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFD 239 (665)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHH
Confidence 114678888889999999999999997 9999999977665566666664443322 2110
Q ss_pred ---c------hhhhHHHHHHHHHHHHh-hhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccC
Q 009837 184 ---R------CVEIGIPMLILFIAFSQ-YLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTD 253 (524)
Q Consensus 184 ---~------~~~i~l~~l~l~i~~~~-~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d 253 (524)
+ .+.+++..+++++ +.+ +.++.+ +.-++.....-++.+++++++++.+.....+.. ..++
T Consensus 240 ~~~~~~~~~~~~~~~l~~l~~L~-~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~ 309 (665)
T KOG0236|consen 240 LLANLPKTLATLVLSLIFLVVLL-LTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG 309 (665)
T ss_pred hhhcccccchhhhhHHHHHHHHH-HHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec
Confidence 0 1233443333332 233 222221 111224455689999999999998864211000 0111
Q ss_pred ccCcCCCCCCccCcccccccCCccC--HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHh
Q 009837 254 KANLISSAPWIKIPYPLQWGAPTFD--AGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLS 331 (524)
Q Consensus 254 ~~~~i~~a~~~~~P~~~~fg~P~F~--~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ila 331 (524)
. + .++ +| +...|.++ ...+...+.++++..+|+++-.++.++..+.+. +.||+++|-|++|+++
T Consensus 310 --~-i--~~g--~~---~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~v----d~nqELiAlG~~Ni~s 375 (665)
T KOG0236|consen 310 --E-I--PRG--FP---PPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKV----DSNQELIALGISNILS 375 (665)
T ss_pred --c-C--CCC--CC---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCee----CCChHHHHHHHHHHhh
Confidence 0 1 112 22 22234333 234556889999999999888888877666543 5699999999999999
Q ss_pred hhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHH-HHHHHHhhHHHHHHHhCChhHHHHHHHH-HHH-HHHHHHhHhh
Q 009837 332 GLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGF-MIFFSMLGKFGAFFASIPFTIFAAVYCV-LFG-LVASVGLSFL 408 (524)
Q Consensus 332 glfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~-lillg~~pk~~~lia~IP~~Vlgg~li~-~fg-~i~~~Gi~~l 408 (524)
++|+++|++.+| .+..+-..+|+.++...++.++. ++.+-+ +..++..+|.++++++.+. +.+ ++-...++.+
T Consensus 376 Sff~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~~---l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~l 451 (665)
T KOG0236|consen 376 SFFGCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALLF---LGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPL 451 (665)
T ss_pred hhhceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhh
Confidence 999999887777 57778889999999886665554 444433 4568999999999998776 555 4444444444
Q ss_pred hc
Q 009837 409 QF 410 (524)
Q Consensus 409 ~~ 410 (524)
.+
T Consensus 452 wr 453 (665)
T KOG0236|consen 452 WR 453 (665)
T ss_pred ee
Confidence 44
No 17
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.57 E-value=1.3e-14 Score=146.65 Aligned_cols=241 Identities=19% Similarity=0.183 Sum_probs=155.5
Q ss_pred HHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccc-c----------------------c--hh---hhHHHHHHHH
Q 009837 145 LGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVV-G----------------------R--CV---EIGIPMLILF 196 (524)
Q Consensus 145 lg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~-~----------------------~--~~---~i~l~~l~l~ 196 (524)
+|++|+ +++.+++|..|+..++..+|+.++..+++.+ | + +| .++..+++++
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 367786 9999999999998899999987665443211 0 0 11 1122222222
Q ss_pred HHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCccCcCC-CCCCccCcccccccCC
Q 009837 197 IAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKANLIS-SAPWIKIPYPLQWGAP 275 (524)
Q Consensus 197 i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~~~i~-~a~~~~~P~~~~fg~P 275 (524)
. +.++.++.. +.+...+.+..++.+++++++++.++.. . ..++..+.+. ..|.+.+|. .
T Consensus 80 ~-~~~~~~~~~-~~~~~~~~p~~li~vv~~~~~~~~~~~~----~--------~~v~~~~~i~~~lp~~~~p~-~----- 139 (280)
T PF00916_consen 80 L-IIRLLPKRL-PSRFWPPIPAPLIVVVLGTLLSWLFLLD----K--------YGVAIVGEIPSGLPPPSLPS-F----- 139 (280)
T ss_pred h-hhhhhhhhc-cccccccccccceeeehhhhhhhhhhhc----c--------ccccccccccccCccccCcc-c-----
Confidence 2 222222111 1122344566888899998888776421 0 0122111111 122333332 0
Q ss_pred ccCHH----HHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhhh
Q 009837 276 TFDAG----HAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLLG 351 (524)
Q Consensus 276 ~F~~~----~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~ 351 (524)
.++++ .+...+.++++..+|++.+.+++++..++ +.+.||++.++|++|+++|+||++|.+.+++ +..+..
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~s-rs~~~~ 214 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSFS-RSAVNY 214 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhcccccccccc-cchHHH
Confidence 33333 34456789999999999988888876654 3478999999999999999999997777764 556667
Q ss_pred hcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHH-HHHHHHHHHhHhhhcccc
Q 009837 352 STRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCV-LFGLVASVGLSFLQFTNM 413 (524)
Q Consensus 352 ~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~-~fg~i~~~Gi~~l~~v~~ 413 (524)
.+|.+||.+.++++++++++-++ +..++..+|.+++++++++ .+.++....++.+.|.+.
T Consensus 215 ~~Ga~t~~s~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~ 275 (280)
T PF00916_consen 215 RAGARTRLSGLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSK 275 (280)
T ss_pred hcCcceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCh
Confidence 88999999988888876655433 4568999999999998886 666666666666655443
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.50 E-value=0.00022 Score=82.00 Aligned_cols=314 Identities=14% Similarity=0.158 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEecchhh---HHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHH
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTVVGGSYAF---MVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILG 146 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg 146 (524)
++=++++++++.+++++++..--++.|++... .-.+..++..++. ..++...=.-+.++++.++++
T Consensus 403 v~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~-----------~yl~~~~WigiW~~~~~~lla 471 (900)
T TIGR00834 403 VSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGL-----------EYLVGRVWIGLWLVLLVLLLV 471 (900)
T ss_pred HHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCC-----------chHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999966655667776432 2223333333211 112222223467778888888
Q ss_pred hhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcccc--------------------------------------------
Q 009837 147 YSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFPVV-------------------------------------------- 182 (524)
Q Consensus 147 ~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~~-------------------------------------------- 182 (524)
.+.. ..++|+++...--.+-++|++.-+..++..+
T Consensus 472 ~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (900)
T TIGR00834 472 ATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLG 550 (900)
T ss_pred HHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccc
Confidence 8776 7788888876555555555554443332110
Q ss_pred ----cchhhhHHHHHH---HHHHHHhhhhhhhc------ccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccc
Q 009837 183 ----GRCVEIGIPMLI---LFIAFSQYLKNFKT------RHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMN 249 (524)
Q Consensus 183 ----~~~~~i~l~~l~---l~i~~~~~~~~~~~------~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~ 249 (524)
......++..++ .++.+..++|++.+ +.|+.+.=+++.+++++-+.+.+.++-. +..
T Consensus 551 ~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v--~~~-------- 620 (900)
T TIGR00834 551 GNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDT--YTQ-------- 620 (900)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccC--ccc--------
Confidence 000222333332 33445556665532 1223344478999999988888876521 100
Q ss_pred cccCccCcC--C---CCCCccCcccccccCCccC-HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhh
Q 009837 250 CRTDKANLI--S---SAPWIKIPYPLQWGAPTFD-AGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGW 323 (524)
Q Consensus 250 ~~~d~~~~i--~---~a~~~~~P~~~~fg~P~F~-~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~a 323 (524)
+.+....+ . .-.|+--|.......|.+. +.++++.+.+++.-++|+-=+..-+++- +++-++....+=.++.
T Consensus 621 -kl~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dlll 698 (900)
T TIGR00834 621 -KLSVPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLLL 698 (900)
T ss_pred -ccCCCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHHH
Confidence 11111001 0 1245421210000012221 4566677788888888865433333331 1222233456667899
Q ss_pred hchHHHHhhhhcCCCCCcccccchhhhh----------------hcCCC-cchhHHHHHHHHHHHHHhhHHHHHHHhCCh
Q 009837 324 QGIGILLSGLFGTLSGSSVSVENVGLLG----------------STRVG-SRRVIQISAGFMIFFSMLGKFGAFFASIPF 386 (524)
Q Consensus 324 dGl~~ilaglfG~~~~~t~~s~n~g~i~----------------~Tg~~-SR~~~~~~g~~lillg~~pk~~~lia~IP~ 386 (524)
-|+.+.++|++|-...+.+..++.--+. ..+|. .|......+++ +.++++ ...++..||.
T Consensus 699 lg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lL-iglsv~--~~PvL~~IP~ 775 (900)
T TIGR00834 699 VVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVL-VGLSIL--MEPILKRIPL 775 (900)
T ss_pred HHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHH-HHHHHH--HHHHHhhccH
Confidence 9999999999995322222222211111 11222 25555555542 222222 4458999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhcc
Q 009837 387 TIFAAVYCVLFGLVASVGLSFLQFT 411 (524)
Q Consensus 387 ~Vlgg~li~~fg~i~~~Gi~~l~~v 411 (524)
+|+.|+.++| |.-...|.+++.|+
T Consensus 776 aVL~GvFlYM-Gv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 776 AVLFGIFLYM-GVTSLSGIQLFDRL 799 (900)
T ss_pred HHHHHHHHHH-HHhhcccCHHHHHH
Confidence 9999999984 66667777766543
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.38 E-value=0.00036 Score=78.72 Aligned_cols=340 Identities=12% Similarity=0.141 Sum_probs=181.2
Q ss_pred HHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhH---HHHHHHHhCCCc
Q 009837 38 FQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFM---VPIISIIHDPSL 114 (524)
Q Consensus 38 lQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~---~~~~~i~~~~~~ 114 (524)
+..++.++.+++...+-.+.-+|-.. +-..-++-+++...++.++.+++|..--+++|++...+ -.+..++.+++.
T Consensus 363 la~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~ 441 (876)
T KOG1172|consen 363 LAATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL 441 (876)
T ss_pred chHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC
Confidence 34566676666555555444333222 22333567899999999999999877777888864322 223334444321
Q ss_pred ccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhHhhhhhcc--------------
Q 009837 115 ASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFGLFDRGFP-------------- 180 (524)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~-------------- 180 (524)
..++-..=..+.+.++.++++.+.. ..+.++|+...=-.+-++|.+..+..++.
T Consensus 442 -----------dyl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~ 509 (876)
T KOG1172|consen 442 -----------DYLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFD 509 (876)
T ss_pred -----------chhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 1122222234677778888888775 77888888654333333333323333222
Q ss_pred ------------cc--------c-----chhhhHHHHHHHHHHHHhhhhhhhc------ccccchhhhHHHHHHHHHHHH
Q 009837 181 ------------VV--------G-----RCVEIGIPMLILFIAFSQYLKNFKT------RHLPIMERFALLITITVIWAY 229 (524)
Q Consensus 181 ------------~~--------~-----~~~~i~l~~l~l~i~~~~~~~~~~~------~~~~~lr~~aiLigiivG~i~ 229 (524)
.. + ++..++++..+.++.++.++|++.+ +.|+++.=+++.+.+++-+.+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i 589 (876)
T KOG1172|consen 510 SKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLI 589 (876)
T ss_pred ccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHH
Confidence 00 0 1112333333445556667776642 122233346899999988888
Q ss_pred HHHHHhcCCCCCCCCccccccccCc----cCcCCC-CCCccCcccccccCCcc-CHHHHHHHHHHHHHHHHHhHhHHHHH
Q 009837 230 AHLLTASGAYKHRPDLTQMNCRTDK----ANLISS-APWIKIPYPLQWGAPTF-DAGHAFGMMAAVLVSLIESTGAYKAA 303 (524)
Q Consensus 230 a~~lg~~~~~~~~~~~~~~~~~~d~----~~~i~~-a~~~~~P~~~~fg~P~F-~~~~i~~~~~~~lv~~~esig~~~av 303 (524)
.+..+.. ++. .++. ...-+. -.|+-.|. . ..|.. -..++++.+.+++.-++|+-=+..-+
T Consensus 590 ~~~~~~~--~~~---------kl~vp~~~~~t~~~~rgw~v~~~-~--~~P~~~~~~A~ipalll~iLiFmDqqIts~iv 655 (876)
T KOG1172|consen 590 DYFGGSV--ETP---------KLPVPSVFPPTWPFDRGWFVPPF-G--KNPWWYVFAALIPALLLTILIFMDQQITAVIV 655 (876)
T ss_pred Hhhcccc--CCC---------ccccCcCCCCCCcccCCeeeCCC-C--CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHh
Confidence 8766521 111 1111 110011 24544331 1 11211 13455566777777778754322222
Q ss_pred HhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhhhhcC----------------CCc-chhHHHHHH
Q 009837 304 SRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLLGSTR----------------VGS-RRVIQISAG 366 (524)
Q Consensus 304 ~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg----------------~~S-R~~~~~~g~ 366 (524)
++. +++-.+....+=.++--|+.+.++|++|=...+....++.--+..=. |.. |......++
T Consensus 656 ~rk-e~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~l 734 (876)
T KOG1172|consen 656 NRK-ENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFL 734 (876)
T ss_pred hcc-cccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHH
Confidence 221 11222334566689999999999999996444444444443222211 111 333444444
Q ss_pred HHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhh
Q 009837 367 FMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQ 409 (524)
Q Consensus 367 ~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~ 409 (524)
+. |+.-....++..||.+|+.|+.++| |.=...|.|...
T Consensus 735 lv---gls~~~~pvL~~IP~~VL~GvFlYM-gv~SL~Gnqf~e 773 (876)
T KOG1172|consen 735 LV---GLSVLLLPVLKLIPMPVLYGVFLYM-GVSSLPGNQFFE 773 (876)
T ss_pred HH---HHHHHHHHHHhhccHHHHHHHHHHH-hhccCCccHHHH
Confidence 33 3333356689999999999999984 444445555543
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.08 E-value=0.002 Score=66.45 Aligned_cols=340 Identities=13% Similarity=0.126 Sum_probs=181.2
Q ss_pred cCcccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHH-HHHHH-HHh--CCCcce
Q 009837 18 QGLEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGI-NTLLQ-TLF--GTRLPT 93 (524)
Q Consensus 18 ~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi-~Tllq-~~~--G~rlPi 93 (524)
++.+|+.||-.|.. +|.---.+|+++. ...-++.+|++++-...-+-.=++..++ -.++. +++ .++++=
T Consensus 53 rD~rfE~ED~vPAl----AgtIGkivMvsAv---~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P~anLAG 125 (492)
T PF11840_consen 53 RDYRFEWEDLVPAL----AGTIGKIVMVSAV---AAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNPRANLAG 125 (492)
T ss_pred cccccchHHhhHHH----HhhhhHHHHHHHH---HHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCccccccC
Confidence 45567777766632 4444445555432 2233445688875333222233333333 22222 222 456665
Q ss_pred EEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHhH
Q 009837 94 VVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGFG 173 (524)
Q Consensus 94 v~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl~ 173 (524)
-.||-...++ .+ +++ | +-+.++| ++.|++-++++++|--.|+.+.-..-|-|..+..+|+.
T Consensus 126 thgPmIpLIp-~i--vaa-G-------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~ 186 (492)
T PF11840_consen 126 THGPMIPLIP-LI--VAA-G-------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFV 186 (492)
T ss_pred CCCCcchhhH-HH--HHc-C-------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhh
Confidence 6666544333 22 221 1 1122333 45688888999998888999999988888776666652
Q ss_pred hhhhhccc----cc--chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 009837 174 LFDRGFPV----VG--RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQ 247 (524)
Q Consensus 174 l~~~~~~~----~~--~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~ 247 (524)
=.-..++. .. +...++.+.+.+.+++-.|+-++. +|| .++-++-+++-++++.+|.-
T Consensus 187 G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~~---KrW---LaIPl~~~~a~~~a~~lGa~----------- 249 (492)
T PF11840_consen 187 GLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKIE---KRW---LAIPLCSILAGVLAFALGAP----------- 249 (492)
T ss_pred hHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc---cch---hhhhHHHHHHHHHHHHcCCC-----------
Confidence 22111211 11 223466666666666655665543 333 56666666677777777741
Q ss_pred cccccCccCc--CCC-CC--CccCcccccccCCccCHHHHHHHHHHHHHHHH----HhHhHHHHHHhhhCCCCCC---Cc
Q 009837 248 MNCRTDKANL--ISS-AP--WIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLI----ESTGAYKAASRLASATPPP---AH 315 (524)
Q Consensus 248 ~~~~~d~~~~--i~~-a~--~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~----esig~~~av~~~~~~~~~~---~~ 315 (524)
.||... ..+ .| |.+=-+-.+.|+|.+ +.++..+++++.... |.+|+- .-++.+- +++. .-
T Consensus 250 ----f~f~t~pglp~lnP~YWWge~tGw~LglP~~--~hfiav~PFAiLAVaMWSpDflghr-vFqelny-pk~~~kvlM 321 (492)
T PF11840_consen 250 ----FEFTTEPGLPNLNPMYWWGEETGWQLGLPTL--EHFIAVLPFAILAVAMWSPDFLGHR-VFQELNY-PKETKKVLM 321 (492)
T ss_pred ----ceeecCCCCCCCCCcccccCCcccccCCCcH--HHHHHhccHHHHHHHHhCchHHHHH-HHHHhcC-chhhcceee
Confidence 233210 000 01 111111124466653 444444444443332 555543 3444432 2221 23
Q ss_pred CCCcchhhhchHHHHhhhhcCCCCCcccccchh-hhhhcCCCcc---hhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHH
Q 009837 316 VLSRGIGWQGIGILLSGLFGTLSGSSVSVENVG-LLGSTRVGSR---RVIQISAGFMIFFSMLGKFGAFFASIPFTIFAA 391 (524)
Q Consensus 316 ~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g-~i~~Tg~~SR---~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg 391 (524)
+++.....-.+=+++++.+|+. +.++ +-| .+.-.-.+.| --.+..|++|++.+...-= .=..+=.||+--
T Consensus 322 nvDDTm~~~siRQ~vGs~lGGg-N~~S---sWgTymIPaaIaKRPIpggAiLtg~~Ci~~av~GyP--Mdlavw~Pvl~v 395 (492)
T PF11840_consen 322 NVDDTMTMCSIRQIVGSILGGG-NIAS---SWGTYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYP--MDLAVWPPVLRV 395 (492)
T ss_pred cccchhHHHHHHHHHhhcccCC-cccc---cchhhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCc--chhhhcccHHHH
Confidence 7888999999999999999984 4332 222 1111112222 2367889999998877410 112233567777
Q ss_pred HHHH-HHHHHHHHHhHhhhccccC
Q 009837 392 VYCV-LFGLVASVGLSFLQFTNMN 414 (524)
Q Consensus 392 ~li~-~fg~i~~~Gi~~l~~v~~~ 414 (524)
++++ +|--+.-+|+++.++-+-+
T Consensus 396 ALlvGVflPLleAGmqm~r~~k~s 419 (492)
T PF11840_consen 396 ALLVGVFLPLLEAGMQMTRKGKTS 419 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcc
Confidence 7776 7888888999998765544
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.88 E-value=0.00093 Score=72.95 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=1.7
Q ss_pred HHHHHhhhhhhhc------ccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccCccCcCCC-CCCccCcc
Q 009837 196 FIAFSQYLKNFKT------RHLPIMERFALLITITVIWAYAHLLTASGAYKHRPDLTQMNCRTDKANLISS-APWIKIPY 268 (524)
Q Consensus 196 ~i~~~~~~~~~~~------~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~~~~~~~~~~~d~~~~i~~-a~~~~~P~ 268 (524)
.+.+..++|++.+ +.|+.+.=+++.+++++-+.+...++. . .+.-.. ..++.....+ -.|+--|.
T Consensus 256 Tf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~~-~-~~kL~v------p~~f~pt~~~~r~W~v~p~ 327 (510)
T PF00955_consen 256 TFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFGV-D-TPKLNV------PSSFKPTSPGKRGWFVNPF 327 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhcc-c-ccccCC------CCCCCCCCCCCCCeecCcc
Confidence 3444555555432 223344447899999988888776652 1 110000 0012110111 24543231
Q ss_pred cccccCCccC-HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccch
Q 009837 269 PLQWGAPTFD-AGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENV 347 (524)
Q Consensus 269 ~~~fg~P~F~-~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~ 347 (524)
...|.+. +.++++.+.+++.-.+|+-=+..-+++- +++-++....+=.+..-|+-+.++|++|-...+.+..++.
T Consensus 328 ---~~~p~w~~~aA~~palll~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~ 403 (510)
T PF00955_consen 328 ---GSLPWWAIFAAIIPALLLTILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSP 403 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCH
Confidence 1123222 3455566677777777754322222221 1122233455567899999999999999533333232322
Q ss_pred hhhhh----------------cCCC-cchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhc
Q 009837 348 GLLGS----------------TRVG-SRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQF 410 (524)
Q Consensus 348 g~i~~----------------Tg~~-SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~ 410 (524)
--+.. .+|. .|.......+ ++|+...+..++..||.||+.|+.+++ |.-...|.|++.|
T Consensus 404 ~Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT~l~~~~---Ligls~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~R 479 (510)
T PF00955_consen 404 MHVRSLAVESETSAPGEKPKIVGVREQRVTGLLVHL---LIGLSLFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFER 479 (510)
T ss_dssp -----------------------------------------------------------------------------TTT
T ss_pred HHhCcccEEeccccCCCCCeeCeEEEecccHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHHH
Confidence 21111 1222 2444444443 233444466689999999999999984 4444555555544
Q ss_pred c
Q 009837 411 T 411 (524)
Q Consensus 411 v 411 (524)
+
T Consensus 480 i 480 (510)
T PF00955_consen 480 I 480 (510)
T ss_dssp T
T ss_pred H
Confidence 3
No 22
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=85.71 E-value=36 Score=36.43 Aligned_cols=143 Identities=9% Similarity=0.028 Sum_probs=82.5
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHH
Q 009837 53 SFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQ 132 (524)
Q Consensus 53 ~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 132 (524)
+-..++.|-+.. +...+...|++|++-+.|| ..++..+. + ..+++... +.+.+ ...=.
T Consensus 244 iavl~aaGy~~p-----~~~~~~~tGl~sll~ApfG-g~~~nlaa----i--taAic~G~--~ah~d--------~~rR~ 301 (395)
T TIGR00843 244 IAALKAAGYNAP-----AKPIIAAAGLAALFAAFAG-GISIGIAA----I--TAAICMGK--DAHED--------KDKRW 301 (395)
T ss_pred HHHHHHcCCCCC-----chHHHHHHHHHHHHHhccC-CchhhhhH----H--hHHHhcCc--ccccC--------cCccc
Confidence 334455565543 4678889999999999996 34432221 1 11223221 11111 22234
Q ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHhcCcchHHHHHHHHHhHhhhhhccc----cc--chhhhHHHHHHHHHHHHhhhhh
Q 009837 133 GALIVASSIQIILGYS-QLWAICSRFFSPLGMVPVISLVGFGLFDRGFPV----VG--RCVEIGIPMLILFIAFSQYLKN 205 (524)
Q Consensus 133 ga~ivaGli~illg~~-gl~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~----~~--~~~~i~l~~l~l~i~~~~~~~~ 205 (524)
++.+.+|++++++|++ +.+..+...+|+..+..+ -|+-|.+.-.+. +. ++-.-+++++++.. .+
T Consensus 302 ~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~~~~~r~~a~~tflvta------Sg 372 (395)
T TIGR00843 302 IAAAAAGIFYLLAGLFAGAITALFAALPKELIAAL---AGLALLGAIAGNIKIALHEDQERDAALIAFLATA------SG 372 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH------hc
Confidence 6788999999999998 777889999998876644 244333321111 11 22233444544321 22
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHH
Q 009837 206 FKTRHLPIMERFALLITITVIWAYAH 231 (524)
Q Consensus 206 ~~~~~~~~lr~~aiLigiivG~i~a~ 231 (524)
..++...+-++|+++|.+...
T Consensus 373 -----~~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 373 -----LHFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred -----CCcccccHHHHHHHHHHHHHH
Confidence 234557899999999976544
No 23
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=82.69 E-value=13 Score=41.70 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhh-------hhcC
Q 009837 282 AFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLL-------GSTR 354 (524)
Q Consensus 282 i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i-------~~Tg 354 (524)
++.-+.++++.+-|+++ .+..++-++ .-|+.+.-+..++.++||+.+-.. .+...... ..-+
T Consensus 18 i~aGltv~~~~iP~~~a----yA~laglpp------~~GLysa~~~~iv~alfGss~~~i-~Gp~a~~sl~~~~~v~~~~ 86 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMA----YAILAGLSP------IYGLYTSFVPPFIYALFGTSRDIA-IGPVAVMSLLLGSVIARVG 86 (563)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCc------hhhhHHHHHHHHHhheecCCCccc-CCHHHHHHHHHHHHHHHhc
Confidence 34456677777777664 445555432 467999999999999999964333 22222111 1111
Q ss_pred CCcc----------hhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhccc
Q 009837 355 VGSR----------RVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQFTN 412 (524)
Q Consensus 355 ~~SR----------~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~v~ 412 (524)
.... .....+|++++++|++ +++.++..||.||+.|.+.-+--.++.+.++.+...+
T Consensus 87 ~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~ 153 (563)
T TIGR00815 87 LQYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGIS 153 (563)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111 4467889999999965 7999999999999999776655566666666554443
No 24
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=75.52 E-value=1.2e+02 Score=32.36 Aligned_cols=163 Identities=14% Similarity=0.180 Sum_probs=87.2
Q ss_pred HHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhC
Q 009837 32 EAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHD 111 (524)
Q Consensus 32 ~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~ 111 (524)
..+-.++=-++...++--+.-+.+-++.|.++. ++..+..+|+++++.+.||. .++.. -++..+++..
T Consensus 207 a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p-----~~~~~~~tGl~s~l~ApfGg-~~~nl------AaitaAIc~g 274 (378)
T PF03594_consen 207 ALVSLALPLFIVTMASQNLPGIAVLRAAGYQPP-----VNPLITVTGLASLLAAPFGG-HAVNL------AAITAAICAG 274 (378)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhhhch-hhhHH------HHHHHHHHcC
Confidence 334444444433333333344555566677665 56777899999999999852 22211 1223344443
Q ss_pred CCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHhcCcchHHHHHHHHHhHhhhhhccc----ccc--
Q 009837 112 PSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ-LWAICSRFFSPLGMVPVISLVGFGLFDRGFPV----VGR-- 184 (524)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g-l~~~l~~~~pp~V~G~~v~lIGl~l~~~~~~~----~~~-- 184 (524)
. +.+++++.+| -+-+.+|++++++|++. ..-.+...+|+..+..+ -|+.|.+.-.+. +.+
T Consensus 275 ~--eah~dp~rRy--------~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~l---AGLALlg~l~~sl~~A~~~~~ 341 (378)
T PF03594_consen 275 P--EAHPDPSRRY--------IAAVAAGVFYLLFGLFAAALVALFAALPPALIAAL---AGLALLGTLGGSLQTAFSDEK 341 (378)
T ss_pred C--ccCCCcccch--------HHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcc
Confidence 2 1223333223 24678999999999863 22456677787665533 244333321111 111
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHH
Q 009837 185 CVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYA 230 (524)
Q Consensus 185 ~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a 230 (524)
+-.-++.++++. ..+ ..++...+-.+|+++|.++.
T Consensus 342 ~r~aAlvtFlvt------aSG-----isl~gIgaafWgLv~G~~~~ 376 (378)
T PF03594_consen 342 YREAALVTFLVT------ASG-----ISLLGIGAAFWGLVAGLLVH 376 (378)
T ss_pred hhHHHHHHHHHH------HcC-----CCcccccHHHHHHHHHHHHH
Confidence 222344444332 122 23456789999999998865
No 25
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=72.42 E-value=28 Score=39.00 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhh--hhhcCCC---
Q 009837 282 AFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGL--LGSTRVG--- 356 (524)
Q Consensus 282 i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~--i~~Tg~~--- 356 (524)
++.-+.++++..=|+++ .+..++-++ ..|+.+.=++.++.++||+.+.. .++...+. +..+-+.
T Consensus 25 l~AGltva~valP~ama----~a~~aGv~p------~~GLyas~i~~~v~alfGgs~~~-i~GPt~a~~~v~a~~i~~~~ 93 (554)
T COG0659 25 LLAGLTVAAVALPLAMA----FAIAAGVPP------EAGLYASIVAGIIYALFGGSRGL-ISGPTGAFAVVLAAVIASLV 93 (554)
T ss_pred HHHHHHHHHHHhHHHHH----HHHHcCCCH------HHHHHHHHHHHHHHHHHcCCccc-eeccchhhHHHHHHHHHHHH
Confidence 44456666777767664 444566432 57899999999999999997543 32222221 1111222
Q ss_pred cc------hhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 009837 357 SR------RVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQFTNM 413 (524)
Q Consensus 357 SR------~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~v~~ 413 (524)
.+ .....+|++++++|++ |++.++..||.||+-|.+--+--.|+...+..+...+.
T Consensus 94 ~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 94 ETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 11 2356788999999965 89999999999999997666555666676766655544
No 26
>PRK11660 putative transporter; Provisional
Probab=71.36 E-value=48 Score=37.25 Aligned_cols=116 Identities=9% Similarity=0.094 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchh-hhhh-----cCC
Q 009837 282 AFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVG-LLGS-----TRV 355 (524)
Q Consensus 282 i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g-~i~~-----Tg~ 355 (524)
++.-+.++++.+-|+++ .+..++.++ .-|+.+.=++.++.++||+.+....-.++.- .+.. .+.
T Consensus 33 ~iAGltv~~~~iPq~ma----yA~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 33 LIAGITVGIIAIPLAMA----LAIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 34556777777777764 445666433 2389999999999999999754433222211 1111 011
Q ss_pred C-cchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhh
Q 009837 356 G-SRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVASVGLSFL 408 (524)
Q Consensus 356 ~-SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l 408 (524)
. .-.....+|++++++|++ +++.+...||.||+.|.+.-+--.+....++.+
T Consensus 103 ~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~ 155 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDF 155 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 012356789999999976 588899999999999966553334445554444
No 27
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=57.58 E-value=24 Score=29.22 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=46.7
Q ss_pred ChhHHhHHHHHHHHHHHhhHhhHHHHHhhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchh
Q 009837 29 SWGEAIALGFQHYILALGTAVMIPSFLVPL--MGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYA 100 (524)
Q Consensus 29 p~~~~~~~GlQh~l~m~~~~i~~P~ila~a--~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa 100 (524)
.+.+.+++|+.-.+.. +|..++.+ .|+++ +..+.++.++.++.++||.+.-++.||+.+
T Consensus 15 ~~~~D~~aGltva~~~------iPq~~a~A~lAg~pp-------~~GLy~a~~~~liyalfG~s~~~~~Gp~a~ 75 (84)
T PF13792_consen 15 NLRGDLLAGLTVALVA------IPQGMAYALLAGVPP-------IYGLYAAIIPPLIYALFGSSRHMIVGPTAA 75 (84)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCC-------CeeeHHHHHHHHHHhhccCCCccccChHHH
Confidence 4678899998866544 56555543 58887 488899999999999999999999999754
No 28
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=57.25 E-value=44 Score=36.25 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ 149 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g 149 (524)
+..++.+-|++|++-+++| ..|. .+++-=...+++..-. ..+ .+..+|++.+++|+++
T Consensus 277 l~rgi~~dGi~s~laglfg-~~p~---tt~sqNvGvi~~TgV~-------------SR~-----v~~~aa~ilillgl~P 334 (433)
T PRK11412 277 YRRSFVATGFMTLITVPLA-VIPF---SPFVSSIGLLTQTGDY-------------RRR-----SFIYGSVMCLLVALIP 334 (433)
T ss_pred cccchhhccHHHHHHHhcC-CCCC---CchhhhhhhhhhcCCc-------------hhH-----HHHHHHHHHHHHHHHH
Confidence 6789999999999999996 5555 2211111122221110 111 3567889999999998
Q ss_pred HHHHHHHhcCcchHHHHH
Q 009837 150 LWAICSRFFSPLGMVPVI 167 (524)
Q Consensus 150 l~~~l~~~~pp~V~G~~v 167 (524)
-+..+...+|..|.|.+.
T Consensus 335 K~~alia~IP~pVlGg~~ 352 (433)
T PRK11412 335 ALTRLFCSIPLPVSSAVM 352 (433)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 889999999988887664
No 29
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=56.73 E-value=1.3e+02 Score=32.43 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ 149 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g 149 (524)
++..+++-|+++++-+++|. .|... |.. -..+.+..+ ...-. +...+|++.++++++.
T Consensus 271 ~~r~l~adGl~~i~aglfG~-~p~t~-----~se-n~g~~~~T~--------------~~sr~-~~~~~a~~~i~~~l~p 328 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFGG-FPNTT-----FAQ-NIGVIALTR--------------VASRW-VIVGAAVILIALGFFP 328 (415)
T ss_pred ccchHHHhhHHHHHHHhcCC-CCCcc-----hhh-hheeeeecC--------------CCchH-HHHHHHHHHHHHHHHH
Confidence 56889999999999999974 76521 110 001111111 01111 5678888999999887
Q ss_pred HHHHHHHhcCcchHHHHHH
Q 009837 150 LWAICSRFFSPLGMVPVIS 168 (524)
Q Consensus 150 l~~~l~~~~pp~V~G~~v~ 168 (524)
.+..+...+|..|.|.+.+
T Consensus 329 k~~~l~~~iP~~vlgg~~l 347 (415)
T TIGR00801 329 KIAALITSIPSPVLGGASI 347 (415)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 7899999999888776643
No 30
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=54.26 E-value=3.5e+02 Score=30.11 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=72.0
Q ss_pred CcccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcce---EE
Q 009837 19 GLEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPT---VV 95 (524)
Q Consensus 19 ~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPi---v~ 95 (524)
..+| +..+|+....+..+.-..+...+.....|++..+.+|.++.....+.++.-+.+-+++++...+..|++. +.
T Consensus 210 G~ry-v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~ 288 (524)
T PF05977_consen 210 GLRY-VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL 288 (524)
T ss_pred HHHH-HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH
Confidence 3445 3445566655555555555444445567888877789988777766666555556666666554433322 11
Q ss_pred ecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHHHHHH
Q 009837 96 GGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMVPVIS 168 (524)
Q Consensus 96 Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G~~v~ 168 (524)
..+. ..+......... .....+..+.++.|......-. ..--.+.+..|+.+.|=+..
T Consensus 289 ~~~~-~~a~~~~~lal~-------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~s 346 (524)
T PF05977_consen 289 LASL-LFALALLLLALS-------------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFS 346 (524)
T ss_pred HHHH-HHHHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHH
Confidence 1111 111111111110 1233445566777776665433 23356788888887765543
No 31
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=51.19 E-value=3.2e+02 Score=32.57 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=107.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchhhhchHHHHhhhhcCCCCCcccccchhhhh--h-
Q 009837 276 TFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIGWQGIGILLSGLFGTLSGSSVSVENVGLLG--S- 352 (524)
Q Consensus 276 ~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~~~~t~~s~n~g~i~--~- 352 (524)
.|+...+.+.+.+++++..-.+.=..-.++.++. .-..+..+++++++.++=++||+= |.+-- ...|-+. .
T Consensus 366 a~~~q~laa~ifiyFA~L~PaIaFG~ll~~~T~g----~~gv~E~Llstai~Giifslf~GQ-PL~Il-G~TGPilvF~~ 439 (900)
T TIGR00834 366 ALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRN----MMGVSELLISTAVQGVLFALLAAQ-PLLVV-GFSGPLLVFEE 439 (900)
T ss_pred hhcchhHHHHHHHHHHHhhHHhhHHHHHHHhhCC----cchHHHHHHHHHHHHHHHhhhcCC-ceEEe-cCcccHHHHHH
Confidence 3566777777888888887766433334444433 346788999999999999999985 44422 1122111 0
Q ss_pred -----cCCC-------cchhHHHHHHHHHHHHHhh--HHHHHHHhCChhHHHHHHHHHHHHHHHHHhHhhhc----ccc-
Q 009837 353 -----TRVG-------SRRVIQISAGFMIFFSMLG--KFGAFFASIPFTIFAAVYCVLFGLVASVGLSFLQF----TNM- 413 (524)
Q Consensus 353 -----Tg~~-------SR~~~~~~g~~lillg~~p--k~~~lia~IP~~Vlgg~li~~fg~i~~~Gi~~l~~----v~~- 413 (524)
.+-. .-|++++.++++++++.+- .+...++-...-+.+...-+.|- .-+++.+.+ -+.
T Consensus 440 ~ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI---~eai~~L~~~f~~~~~~ 516 (900)
T TIGR00834 440 AFFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFI---YETFSKLIKIFQEHPLQ 516 (900)
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcc
Confidence 0100 1267788888888887764 34445555566666553222222 233333321 110
Q ss_pred ---C-----------------------------------CCcceeeehHHHHhhhhh-hHHHHHhhhhhcCCCCcccccc
Q 009837 414 ---N-----------------------------------SMRNLFITGVALFLGLSV-PEYFREYTAKALHGPAHTRAGW 454 (524)
Q Consensus 414 ---~-----------------------------------~~rn~~ivg~sl~~Gl~~-p~~~~~~~~~~~~~p~~~~~~~ 454 (524)
+ ...|....++-+.+|... ..++.++. ....
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk----------~s~y 586 (900)
T TIGR00834 517 VFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFK----------NSRY 586 (900)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhC----------CCCc
Confidence 0 002344445555555543 44455542 1224
Q ss_pred hhhHHHHHhcc-cchhHHHHHHHHhhccC
Q 009837 455 FNDFLNTIFFS-SPTVALIVAVFLDNTLD 482 (524)
Q Consensus 455 lp~~~~~ll~s-gi~~g~l~ailLn~~~~ 482 (524)
+|..+|.++++ |+.++.++-..++..++
T Consensus 587 f~~~vR~~isDfgv~iaI~~~t~v~~~~~ 615 (900)
T TIGR00834 587 FPGKARRLIGDFGVPISILIMVLVDIFIG 615 (900)
T ss_pred CCchhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 67888888876 88888888888888765
No 32
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=51.03 E-value=1.6e+02 Score=31.20 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCC
Q 009837 34 IALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPS 113 (524)
Q Consensus 34 ~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~ 113 (524)
++.-+...++.....+-.-..+++..|.++++ ..-+..++.+-|++|++-+++|. .|...=... ...+...+..
T Consensus 234 i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~-~~~~~r~l~~dg~~~~l~gl~G~-~~~t~~~en---~g~i~~t~v~- 307 (389)
T PF00860_consen 234 ILTFLIFALVAMFESIGTIVAVARIAGKDDPR-PPRIRRGLLADGLGTILAGLFGT-SPTTTYSEN---AGGIAATGVA- 307 (389)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCC-CCCHHHHHHHHHHHHHHHHHHT----EEE-HHH---HHHHHHHTB--
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCCcc-chhhcccceeeeeeeeechhhcC-CCCcccccc---chhhhhhccc-
Confidence 33333333333334444444444445555442 23368999999999999999987 555222211 1122222110
Q ss_pred cccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchH-HHHHHHHHh
Q 009837 114 LASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGM-VPVISLVGF 172 (524)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~-G~~v~lIGl 172 (524)
.+. ..+.++++.++++++..+..+...+|..|+ |..+.+.|.
T Consensus 308 ------------Sr~-----~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 308 ------------SRR-----VGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp -------------HH-----HHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred ------------cce-----eeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 011 357788888999988888999999998884 555555554
No 33
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=45.63 E-value=4e+02 Score=28.35 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ 149 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g 149 (524)
++..+.+-|+++++-+++| ..|.. ++.--....... +.. ..+ +.+++|++.+++++++
T Consensus 255 ~~~~l~~~Gi~~i~aglfG-~~p~t---~~~~~~~~~~~t---g~~----------sr~-----~~~~~~~~lil~~l~~ 312 (406)
T TIGR03173 255 LAGGLRADGLGSALGGLFN-TFPYT---SFSQNVGLVQLT---GVK----------SRY-----VVAAAGVILVLLGLFP 312 (406)
T ss_pred ccchHHhccHHHHHHHHhC-CCCCc---chhhhHHHHHHh---CCC----------chH-----hHHHHHHHHHHHHHHH
Confidence 5788999999999999997 57752 111101111111 100 112 2477888888888887
Q ss_pred HHHHHHHhcCcchHHHH
Q 009837 150 LWAICSRFFSPLGMVPV 166 (524)
Q Consensus 150 l~~~l~~~~pp~V~G~~ 166 (524)
.+..+...+|..|.|.+
T Consensus 313 ~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 313 KLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 77999999998888774
No 34
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=39.77 E-value=3.7e+02 Score=29.09 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceE-EecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTV-VGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYS 148 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv-~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~ 148 (524)
++..+.+-|++|++-+++| ..|.. .+-+... .+..+ ..-+ ..+..++++.++++++
T Consensus 282 i~r~l~adGl~t~~agl~g-~~p~tt~~en~g~-------i~~T~------------v~SR---~v~~~a~~~lillgl~ 338 (429)
T TIGR03616 282 MGRAFVGDGLATMLSGSVG-GTGVTTYAENIGV-------MAVTK------------VYST---LVFVAAAVFAILLGFS 338 (429)
T ss_pred hccchhhhhHHHHHHHhcC-CCCCcceeeeeee-------eeecC------------cchH---HHHHHHHHHHHHHHHH
Confidence 7899999999999999986 33431 1111110 00000 0001 2356788889999998
Q ss_pred hHHHHHHHhcCcchHHHHHH
Q 009837 149 QLWAICSRFFSPLGMVPVIS 168 (524)
Q Consensus 149 gl~~~l~~~~pp~V~G~~v~ 168 (524)
+-++.+...+|..|.|.+.+
T Consensus 339 Pk~~al~~~IP~pVlgG~~i 358 (429)
T TIGR03616 339 PKFGALIHTIPVAVLGGASI 358 (429)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 88889999999888776643
No 35
>COG4129 Predicted membrane protein [Function unknown]
Probab=36.30 E-value=4.5e+02 Score=27.52 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhHH
Q 009837 72 TLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQLW 151 (524)
Q Consensus 72 ~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~gl~ 151 (524)
.+-++.+++.++--++|+..|. |+.+.+++.+-.+ -..+.+.+++-++|.++-+++-.+.+.++|
T Consensus 15 Kt~ia~~La~~ia~~l~~~~~~-----~A~i~AV~~l~~t--------~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g-- 79 (332)
T COG4129 15 KTGLAAGLALLIAHLLGLPQPA-----FAGISAVLCLSPT--------IKRSLKRALQRLLGNALGAILAVLFFLLFG-- 79 (332)
T ss_pred HHHHHHHHHHHHHHHhCCCchH-----HHHHHHhhcccCc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 4557777777776677766653 5544444433221 112345667777777666555555544433
Q ss_pred HHHHHhcCcchHHHHHHH
Q 009837 152 AICSRFFSPLGMVPVISL 169 (524)
Q Consensus 152 ~~l~~~~pp~V~G~~v~l 169 (524)
..|.+.|.++..
T Consensus 80 ------~~~~~~~v~~~i 91 (332)
T COG4129 80 ------QNPIAFGVVLLI 91 (332)
T ss_pred ------ccHHHHHHHHHH
Confidence 345556655443
No 36
>COG3817 Predicted membrane protein [Function unknown]
Probab=32.88 E-value=2.6e+02 Score=28.19 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=21.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCC
Q 009837 276 TFDAGHAFGMMAAVLVSLIESTGAYKAASRLASA 309 (524)
Q Consensus 276 ~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~ 309 (524)
+.+|..+++=+..++-..+-+.|.-.++++...+
T Consensus 163 ~v~wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~ 196 (313)
T COG3817 163 QVSWAAILPQMLAALGAVFASAGVGDVIAHLISE 196 (313)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3456777776666666666666666666666543
No 37
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=25.79 E-value=2.5e+02 Score=30.74 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCcchHHHH
Q 009837 135 LIVASSIQIILGYSQLWAICSRFFSPLGMVPV 166 (524)
Q Consensus 135 ~ivaGli~illg~~gl~~~l~~~~pp~V~G~~ 166 (524)
+..++++.+++|+++.++++...+|..|.|.+
T Consensus 325 ~~~aavili~lgl~pk~~al~~sIP~pVlGGa 356 (451)
T COG2233 325 IAGAAVILILLGLFPKFGALIQSIPSPVLGGA 356 (451)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhCChhhhhHH
Confidence 46678899999999989999999998887755
No 38
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=25.38 E-value=8.7e+02 Score=26.11 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=26.2
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEE
Q 009837 56 VPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTVV 95 (524)
Q Consensus 56 a~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv~ 95 (524)
.+..|++..+........++...++.++... +|.|..+..
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~ 106 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF 106 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 4557999888776655555566667777654 577765533
No 39
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.57 E-value=1.3e+03 Score=26.87 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=29.8
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEe
Q 009837 58 LMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTVVG 96 (524)
Q Consensus 58 a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv~G 96 (524)
..|++..+...+.+...+...+++++.+. +|.|..++.+
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 47899988888888888888899988875 5766555443
No 40
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=21.50 E-value=2.1e+02 Score=27.06 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=12.4
Q ss_pred CCCCCCccCcccccccCCccCHHHHHH
Q 009837 258 ISSAPWIKIPYPLQWGAPTFDAGHAFG 284 (524)
Q Consensus 258 i~~a~~~~~P~~~~fg~P~F~~~~i~~ 284 (524)
+..-|.+++|. |-...|++..+..
T Consensus 83 iGGKP~~S~Pa---fipi~FEltVL~a 106 (173)
T PF11821_consen 83 IGGKPLFSWPA---FIPITFELTVLFA 106 (173)
T ss_pred cCCCCCCCCcc---cchHHHHHHHHHH
Confidence 44556667663 3323555554443
No 41
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=21.49 E-value=7.4e+02 Score=25.63 Aligned_cols=32 Identities=9% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhHHHHHHHhcCcchHHHHHHHHHh
Q 009837 138 ASSIQIILGYSQLWAICSRFFSPLGMVPVISLVGF 172 (524)
Q Consensus 138 aGli~illg~~gl~~~l~~~~pp~V~G~~v~lIGl 172 (524)
++++..++|++-.++ +++|+.+.|..+..+++
T Consensus 31 t~lFW~llg~~F~~G---~~lp~~~~G~lvl~m~~ 62 (308)
T PF06166_consen 31 TALFWGLLGLIFIFG---DYLPPFVVGILVLVMAL 62 (308)
T ss_pred hHHHHHHHHHHHHcC---ccchhHHHHHHHHHHHH
Confidence 566777777654444 59999999999888876
No 42
>PRK10720 uracil transporter; Provisional
Probab=20.92 E-value=6.4e+02 Score=27.22 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ 149 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g 149 (524)
+...+++-|++|++-+++| ..|... ++--....+..+ . ...+ ....+|++.+++++++
T Consensus 262 ~~r~l~adGlatii~glfG-~~p~tt---y~en~g~ia~T~---v----------~sr~-----v~~~a~~~li~lg~~p 319 (428)
T PRK10720 262 LHRSMFANGLSTVISGFFG-STPNTT---YGENIGVMAITR---V----------YSTW-----VIGGAAIIAILLSCVG 319 (428)
T ss_pred ccchHhhhhHHHHHHHhcC-CCCccc---cccccceeeecc---c----------chhH-----HHHHHHHHHHHHHHHH
Confidence 5788999999999999986 446421 100000000000 0 0011 2355888999999988
Q ss_pred HHHHHHHhcCcchHHHHHH
Q 009837 150 LWAICSRFFSPLGMVPVIS 168 (524)
Q Consensus 150 l~~~l~~~~pp~V~G~~v~ 168 (524)
-+..+...+|..|.|.+.+
T Consensus 320 k~~a~ia~iP~pVlgg~~i 338 (428)
T PRK10720 320 KLAAAIQAIPLPVMGGVSL 338 (428)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 8899999999888776643
No 43
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=20.26 E-value=4.8e+02 Score=28.24 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=14.7
Q ss_pred CCcchhhhchHHHHhhhhcCCCCCcc
Q 009837 317 LSRGIGWQGIGILLSGLFGTLSGSSV 342 (524)
Q Consensus 317 i~r~l~adGl~~ilaglfG~~~~~t~ 342 (524)
.+|-...--.+++++.+.|..|+.++
T Consensus 227 ~~~~~~~~~~~s~iG~~vG~lPG~G~ 252 (419)
T PF01970_consen 227 IKRIWKNILRGSIIGTFVGILPGAGA 252 (419)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCcH
Confidence 33344444456666677777665554
No 44
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.18 E-value=36 Score=26.75 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=2.3
Q ss_pred cchhHHHHHHHHhhccCCCCCccccCchhhhhhc
Q 009837 466 SPTVALIVAVFLDNTLDYKDSAKDRGMPWWVKFR 499 (524)
Q Consensus 466 gi~~g~l~ailLn~~~~~~~~~~~~g~~~~~~~~ 499 (524)
|.++|.+++++|=.++-.+-.+|+.|.+.-++.+
T Consensus 17 G~Vvgll~ailLIlf~iyR~rkkdEGSY~l~e~K 50 (64)
T PF01034_consen 17 GGVVGLLFAILLILFLIYRMRKKDEGSYDLDEPK 50 (64)
T ss_dssp --------------------S------SS--S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCC
Confidence 5667888888887777665666777855554443
Done!