Query 009837
Match_columns 524
No_of_seqs 192 out of 1783
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1E-69 3.5E-74 576.5 31.0 391 18-484 2-409 (429)
2 3qe7_A Uracil permease; uracil 58.8 1.6E+02 0.0053 30.4 14.5 75 70-166 263-337 (429)
3 1pw4_A Glycerol-3-phosphate tr 30.6 3.9E+02 0.013 26.0 13.7 41 46-86 270-310 (451)
4 3o7q_A L-fucose-proton symport 28.9 4.1E+02 0.014 25.8 13.1 98 51-164 49-152 (438)
5 3o7q_A L-fucose-proton symport 18.1 2.3E+02 0.008 27.6 7.3 60 27-86 257-317 (438)
6 4aps_A DI-OR tripeptide H+ sym 16.6 7.6E+02 0.026 24.3 12.3 49 49-97 34-92 (491)
7 1pw4_A Glycerol-3-phosphate tr 15.4 3.7E+02 0.013 26.2 8.0 61 32-94 29-96 (451)
8 2xut_A Proton/peptide symporte 12.6 8.8E+02 0.03 24.1 10.2 38 49-86 33-76 (524)
9 2gfp_A EMRD, multidrug resista 10.3 1E+03 0.034 22.3 11.3 41 56-96 27-71 (375)
10 2cfq_A Lactose permease; trans 6.2 5.2E+02 0.018 25.3 5.0 45 49-93 28-76 (417)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=1e-69 Score=576.53 Aligned_cols=391 Identities=24% Similarity=0.403 Sum_probs=347.8
Q ss_pred cCcccccCCCCChhHHhHHHHHHHHHHHhhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHh-CCCcceEEe
Q 009837 18 QGLEYCIDSNPSWGEAIALGFQHYILALGTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTLF-GTRLPTVVG 96 (524)
Q Consensus 18 ~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~~-G~rlPiv~G 96 (524)
.|+.|++|||||+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|.++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 46789999999999999999999999999999999997 7886 48999999999999987 899999999
Q ss_pred cchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhh--hHH-HHHHHhcCcchHHHHHHHHHhH
Q 009837 97 GSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYS--QLW-AICSRFFSPLGMVPVISLVGFG 173 (524)
Q Consensus 97 psfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~--gl~-~~l~~~~pp~V~G~~v~lIGl~ 173 (524)
+||+|++++.++.+ ++|++++|+++++|+++++++++ ++. +|++|+|||+|+|.++++||++
T Consensus 71 ~sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 71 SSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp ECGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 99999999887753 36899999999999999999987 543 6999999999999999999999
Q ss_pred hhhhhccccc-----------chhhhHHHHHHHHHHHHhhhhhhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 009837 174 LFDRGFPVVG-----------RCVEIGIPMLILFIAFSQYLKNFKTRHLPIMERFALLITITVIWAYAHLLTASGAYKHR 242 (524)
Q Consensus 174 l~~~~~~~~~-----------~~~~i~l~~l~l~i~~~~~~~~~~~~~~~~lr~~aiLigiivG~i~a~~lg~~~~~~~~ 242 (524)
+.+.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++++.+|.
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~------- 201 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGI------- 201 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcC-------
Confidence 9988775432 246678888887777766554 457789999999999999999984
Q ss_pred CCccccccccCccCcCCCCCCccCcccccccCCccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcCCCcchh
Q 009837 243 PDLTQMNCRTDKANLISSAPWIKIPYPLQWGAPTFDAGHAFGMMAAVLVSLIESTGAYKAASRLASATPPPAHVLSRGIG 322 (524)
Q Consensus 243 ~~~~~~~~~~d~~~~i~~a~~~~~P~~~~fg~P~F~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~ 322 (524)
+|++. +.+++|+++|. |+.|+||++.+..+++++++.++|++|++.++++.++++.++++++||++.
T Consensus 202 ---------~d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~ 268 (429)
T 3qe7_A 202 ---------VDTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268 (429)
T ss_dssp ---------TTSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred ---------CCccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence 35543 56789999994 577999999999999999999999999999999999876656789999999
Q ss_pred hhchHHHHhhhhcCCCCCcccccchhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHhCChhHHHHHHHHHHHHHHH
Q 009837 323 WQGIGILLSGLFGTLSGSSVSVENVGLLGSTRVGSRRVIQISAGFMIFFSMLGKFGAFFASIPFTIFAAVYCVLFGLVAS 402 (524)
Q Consensus 323 adGl~~ilaglfG~~~~~t~~s~n~g~i~~Tg~~SR~~~~~~g~~lillg~~pk~~~lia~IP~~Vlgg~li~~fg~i~~ 402 (524)
+||++|+++|+||+. ++|+|+||+|+++.||++||++.+.+|+++++++++||++++++.||.||+||+++++|+++..
T Consensus 269 adGla~i~~glfGg~-p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~ 347 (429)
T 3qe7_A 269 ANGLSTVISGFFGST-PNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA 347 (429)
T ss_dssp HHHHHHHHHHHHTCC-CEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999996 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhh--hccccCCCcceeeehHHHHhhhhhhHHHHHhhhhhcCCCCcccccchhhHHHHHhcccchhHHHHHHHHhhc
Q 009837 403 VGLSFL--QFTNMNSMRNLFITGVALFLGLSVPEYFREYTAKALHGPAHTRAGWFNDFLNTIFFSSPTVALIVAVFLDNT 480 (524)
Q Consensus 403 ~Gi~~l--~~v~~~~~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~ll~sgi~~g~l~ailLn~~ 480 (524)
+|+|++ +++|++++||.+|+|+++.+|++.... | ++.+..||+++|+++|++||++
T Consensus 348 ~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~--------------------~--~~~~~~~gi~~~~~~ai~ln~~ 405 (429)
T 3qe7_A 348 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGLSLI 405 (429)
T ss_dssp HHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCC--------------------C--SSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHH--------------------h--hhhhccCcHHHHHHHHHHHHHH
Confidence 999999 899999889999999999999986311 1 1346789999999999999999
Q ss_pred cCCC
Q 009837 481 LDYK 484 (524)
Q Consensus 481 ~~~~ 484 (524)
+|++
T Consensus 406 l~~~ 409 (429)
T 3qe7_A 406 FKLI 409 (429)
T ss_dssp HTCC
T ss_pred hcCc
Confidence 9954
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=58.78 E-value=1.6e+02 Score=30.44 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEecchhhHHHHHHHHhCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 009837 70 VQTLLFVEGINTLLQTLFGTRLPTVVGGSYAFMVPIISIIHDPSLASIEDNHVRFLNTMRAVQGALIVASSIQIILGYSQ 149 (524)
Q Consensus 70 i~~~l~~sGi~Tllq~~~G~rlPiv~Gpsfa~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ga~ivaGli~illg~~g 149 (524)
++..+.+-|++|++-+++| ..|.-. +.--....+..... ..+ +...+|++.+++++++
T Consensus 263 ~~r~l~adGla~i~~glfG-g~p~Tt---~~en~g~i~~tg~~-------------sr~-----~~~~ag~~lillgl~p 320 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFG-STPNTT---YGENIGVMAITRVY-------------STW-----VIGGAAIFAILLSCVG 320 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCEEE---CHHHHHHHHHHTBC-------------CHH-----HHHHHHHHHHHHTCCH
T ss_pred cchHHHHHHHHHHHHHhcC-CCCcch---HHHhHHHHHhcCCc-------------chH-----HHHHHHHHHHHHHHHH
Confidence 5689999999999999997 477532 21111122222211 112 3578888889999887
Q ss_pred HHHHHHHhcCcchHHHH
Q 009837 150 LWAICSRFFSPLGMVPV 166 (524)
Q Consensus 150 l~~~l~~~~pp~V~G~~ 166 (524)
.+..+...+|..|.|.+
T Consensus 321 k~~al~~~IP~~vlgg~ 337 (429)
T 3qe7_A 321 KLAAAIQMIPLPVMGGV 337 (429)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHH
Confidence 77899999998887765
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=30.62 E-value=3.9e+02 Score=26.03 Aligned_cols=41 Identities=15% Similarity=0.006 Sum_probs=26.5
Q ss_pred hhHhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 009837 46 GTAVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL 86 (524)
Q Consensus 46 ~~~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~ 86 (524)
......|..+.+..|.++.+...+.....+...++.++...
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445676666667999887776666655566666666554
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=28.91 E-value=4.1e+02 Score=25.77 Aligned_cols=98 Identities=6% Similarity=-0.093 Sum_probs=54.9
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEecchhhHHHHHHH--HhCCCcccccchhhhh
Q 009837 51 IPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTVVGGSYAFMVPIISI--IHDPSLASIEDNHVRF 124 (524)
Q Consensus 51 ~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv~Gpsfa~~~~~~~i--~~~~~~~~~~~~~~~~ 124 (524)
.|. +.+..|+++.+...+.+...+...++.++.+. +|.|..++.+.....+...... ...
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 114 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------------- 114 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-------------
Confidence 444 44568999999888888888888888887765 5666655444432222211110 110
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCcchHH
Q 009837 125 LNTMRAVQGALIVASSIQIILGYSQLWAICSRFFSPLGMV 164 (524)
Q Consensus 125 ~~~~~~~~ga~ivaGli~illg~~gl~~~l~~~~pp~V~G 164 (524)
..+.....+.++.|+..-..-.. ....+.+.+|+.--+
T Consensus 115 -~~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~r~ 152 (438)
T 3o7q_A 115 -MNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESSGH 152 (438)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTTHH
T ss_pred -ccHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchhHH
Confidence 12444455556666554433222 235677788875543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=18.13 E-value=2.3e+02 Score=27.61 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=33.4
Q ss_pred CCChhHHhHHHHHHHHHHHhhHhhHHHH-HhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 009837 27 NPSWGEAIALGFQHYILALGTAVMIPSF-LVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL 86 (524)
Q Consensus 27 ~pp~~~~~~~GlQh~l~m~~~~i~~P~i-la~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~ 86 (524)
++.+....+..+-............|.. +.+..|.+..+...+.....++..++.++-..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333333445666 66666999887776665555555566655554
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.64 E-value=7.6e+02 Score=24.32 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=34.4
Q ss_pred hhHHHHHhhh-----cCCChhhHHHHHHHHHHHHHHHHHHHHH-----hCCCcceEEec
Q 009837 49 VMIPSFLVPL-----MGGSDGDKVRVVQTLLFVEGINTLLQTL-----FGTRLPTVVGG 97 (524)
Q Consensus 49 i~~P~ila~a-----~Gl~~~~~~~li~~~l~~sGi~Tllq~~-----~G~rlPiv~Gp 97 (524)
...|..+.+. .|.+..+...+.+...+...++.++.+. +|.|..+..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4455555555 8999999998888888888888888774 45555444443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=15.41 E-value=3.7e+02 Score=26.18 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHHHhh---HhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 009837 32 EAIALGFQHYILALGT---AVMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTV 94 (524)
Q Consensus 32 ~~~~~GlQh~l~m~~~---~i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv 94 (524)
......+.+++..+.. ....|.+.. .. .++.+...+.+...+...++.++-+. +|.|..++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~ 96 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 96 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHH
Confidence 3444444444443332 233444433 35 78888888877777777777777765 45554443
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=12.56 E-value=8.8e+02 Score=24.12 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=27.3
Q ss_pred hhHHHHHhhhcC------CChhhHHHHHHHHHHHHHHHHHHHHH
Q 009837 49 VMIPSFLVPLMG------GSDGDKVRVVQTLLFVEGINTLLQTL 86 (524)
Q Consensus 49 i~~P~ila~a~G------l~~~~~~~li~~~l~~sGi~Tllq~~ 86 (524)
...|..+.+..| .++.+...+.+...+...++.++-..
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~ 76 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGW 76 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556678 89888888777777777777777765
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=10.27 E-value=1e+03 Score=22.28 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=29.0
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceEEe
Q 009837 56 VPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTVVG 96 (524)
Q Consensus 56 a~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv~G 96 (524)
.+..|.++++...+.+...+...++.++-.. +|.|..+..+
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 71 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVG 71 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 4557999988888877777777777777665 4666555433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=6.15 E-value=5.2e+02 Score=25.29 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=33.7
Q ss_pred hhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 009837 49 VMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPT 93 (524)
Q Consensus 49 i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPi 93 (524)
-..|.-+.+..|+++.+...+.+...+...++..+-+. +|.|..+
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l 76 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34566566668999999888888888888888888776 5656554
Done!