Query 009837
Match_columns 524
No_of_seqs 192 out of 1783
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 14:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009837.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009837hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 9.1 1.9E+02 0.014 24.8 5.6 44 51-94 30-77 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 8.7 5.6E+02 0.041 22.0 12.5 37 50-86 271-307 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 5.6 7.8E+02 0.057 20.9 9.5 43 49-93 46-92 (447)
4 d2ffta1 g.88.1.1 (A:2-84) Thyl 3.2 1.4E+02 0.01 21.3 0.3 11 485-495 7-17 (83)
5 d1x4pa1 a.217.1.1 (A:8-60) Arg 2.7 1E+02 0.0073 20.1 -0.9 14 479-492 10-23 (53)
6 d1yu8x1 a.14.1.1 (X:42-76) Vil 2.2 1.3E+02 0.0093 18.2 -0.9 11 506-516 13-23 (35)
7 d2axtz1 f.17.5.1 (Z:1-62) Phot 2.0 5.9E+02 0.043 17.1 2.3 23 409-431 29-51 (62)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 1.9 7.3E+02 0.053 13.8 2.5 15 217-231 12-26 (32)
9 d1v8ca2 d.129.5.1 (A:88-165) M 1.8 1.5E+02 0.011 20.4 -1.1 16 500-515 20-35 (78)
10 d1bdsa_ g.9.1.1 (A:) BDs-I def 1.7 3.7E+02 0.027 16.1 0.8 9 507-515 29-37 (43)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.14 E-value=1.9e+02 Score=24.81 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcceE
Q 009837 51 IPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPTV 94 (524)
Q Consensus 51 ~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPiv 94 (524)
.|.-+.+..|+++.|...+.+...+...++..+.+. +|.|..++
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~ 77 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 344456678999999988888888888888887765 57666553
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.72 E-value=5.6e+02 Score=22.03 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=26.9
Q ss_pred hHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 009837 50 MIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL 86 (524)
Q Consensus 50 ~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~ 86 (524)
..|..+.+..+.+.++.........+...+++++..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (447)
T d1pw4a_ 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307 (447)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhh
Confidence 3566666667889888887777777777777777765
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.59 E-value=7.8e+02 Score=20.88 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.4
Q ss_pred hhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 009837 49 VMIPSFLVPLMGGSDGDKVRVVQTLLFVEGINTLLQTL----FGTRLPT 93 (524)
Q Consensus 49 i~~P~ila~a~Gl~~~~~~~li~~~l~~sGi~Tllq~~----~G~rlPi 93 (524)
++.|.+. ..|+++.|...+.+...+..+++.++-+. +|.|.-+
T Consensus 46 ~~~p~~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~ 92 (447)
T d1pw4a_ 46 LAMPYLV--EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 92 (447)
T ss_dssp HHHHHTT--SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4456442 37999999999888888888888888775 4555444
No 4
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=3.22 E-value=1.4e+02 Score=21.30 Aligned_cols=11 Identities=9% Similarity=0.604 Sum_probs=9.2
Q ss_pred CCccccCchhh
Q 009837 485 DSAKDRGMPWW 495 (524)
Q Consensus 485 ~~~~~~g~~~~ 495 (524)
++.||+|+..|
T Consensus 7 g~KeeKg~idw 17 (83)
T d2ffta1 7 ETKQEKSFVDW 17 (83)
T ss_dssp CCCCCCSHHHH
T ss_pred CcccccchHHH
Confidence 56789999999
No 5
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.71 E-value=1e+02 Score=20.11 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=9.6
Q ss_pred hccCCCCCccccCc
Q 009837 479 NTLDYKDSAKDRGM 492 (524)
Q Consensus 479 ~~~~~~~~~~~~g~ 492 (524)
.++.++.++|||.+
T Consensus 10 ~ii~G~LspkeR~~ 23 (53)
T d1x4pa1 10 RVIEGSLSPKERTL 23 (53)
T ss_dssp HHHHTCSCHHHHHH
T ss_pred HHHcCCCCHHHHHH
Confidence 34455667889987
No 6
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.16 E-value=1.3e+02 Score=18.24 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=7.6
Q ss_pred CCcccccCCcc
Q 009837 506 RNEEFYTLPFN 516 (524)
Q Consensus 506 ~~~~~~~~~~~ 516 (524)
+.+++|.+|-|
T Consensus 13 sr~eF~~LP~W 23 (35)
T d1yu8x1 13 TRSAFANLPLW 23 (35)
T ss_dssp CHHHHHTSCHH
T ss_pred CHHHHHHCcHh
Confidence 45667888766
No 7
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.96 E-value=5.9e+02 Score=17.06 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=17.5
Q ss_pred hccccCCCcceeeehHHHHhhhh
Q 009837 409 QFTNMNSMRNLFITGVALFLGLS 431 (524)
Q Consensus 409 ~~v~~~~~rn~~ivg~sl~~Gl~ 431 (524)
+-.+|++++|..-.|.++..|+-
T Consensus 29 SP~gW~~sK~lvfsG~~~W~~LV 51 (62)
T d2axtz1 29 SPQDWDRSKQLIFLGSGLWIALV 51 (62)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCceEEEchhHHHHHH
Confidence 45688878888888888887764
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.85 E-value=7.3e+02 Score=13.77 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHH
Q 009837 217 FALLITITVIWAYAH 231 (524)
Q Consensus 217 ~aiLigiivG~i~a~ 231 (524)
.+...|+.+|.+.+.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 355566777766543
No 9
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=1.77 E-value=1.5e+02 Score=20.36 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=11.7
Q ss_pred ccCCCCCCcccccCCc
Q 009837 500 TFKGDTRNEEFYTLPF 515 (524)
Q Consensus 500 ~~~~~~~~~~~~~~~~ 515 (524)
+|.++.+.++.|++|-
T Consensus 20 ~wgg~~e~egv~rlpg 35 (78)
T d1v8ca2 20 EWGGTREGEGVYRLPG 35 (78)
T ss_dssp HTTCEEEETTEEEETT
T ss_pred HhCCccccceEEecCC
Confidence 4666667788888884
No 10
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=1.72 E-value=3.7e+02 Score=16.06 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=6.2
Q ss_pred CcccccCCc
Q 009837 507 NEEFYTLPF 515 (524)
Q Consensus 507 ~~~~~~~~~ 515 (524)
.+.+|+||+
T Consensus 29 tsncykwpn 37 (43)
T d1bdsa_ 29 TSNCYKWPN 37 (43)
T ss_dssp CCEEEETTE
T ss_pred ccccccCCc
Confidence 445788885
Done!