Query 009839
Match_columns 524
No_of_seqs 150 out of 199
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 17:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2412 Nuclear-export-signal 100.0 9.3E-82 2E-86 664.3 40.5 448 1-488 123-588 (591)
2 PF07817 GLE1: GLE1-like prote 100.0 5.4E-62 1.2E-66 486.0 17.9 230 223-454 4-256 (256)
3 KOG0163 Myosin class VI heavy 97.1 0.017 3.6E-07 66.0 16.0 54 101-154 930-984 (1259)
4 KOG1029 Endocytic adaptor prot 96.7 0.024 5.3E-07 64.8 13.8 9 288-296 543-551 (1118)
5 KOG2412 Nuclear-export-signal 96.3 0.076 1.7E-06 58.9 14.2 125 54-189 166-293 (591)
6 PF02854 MIF4G: MIF4G domain; 96.2 0.069 1.5E-06 49.7 11.5 174 247-456 2-184 (209)
7 PTZ00266 NIMA-related protein 96.1 0.058 1.3E-06 64.3 13.2 18 113-130 475-492 (1021)
8 PTZ00121 MAEBL; Provisional 96.1 0.13 2.9E-06 62.4 15.7 13 56-68 1132-1144(2084)
9 PTZ00121 MAEBL; Provisional 95.8 0.68 1.5E-05 56.6 19.6 19 82-100 1185-1203(2084)
10 PTZ00266 NIMA-related protein 95.4 0.11 2.3E-06 62.2 11.6 16 445-460 916-931 (1021)
11 smart00543 MIF4G Middle domain 94.3 1.4 3.1E-05 41.1 13.9 167 247-455 2-174 (200)
12 COG3064 TolA Membrane protein 93.8 5.4 0.00012 42.2 17.8 25 330-366 325-349 (387)
13 KOG1029 Endocytic adaptor prot 93.3 0.92 2E-05 52.5 12.3 7 333-339 696-702 (1118)
14 KOG0163 Myosin class VI heavy 92.9 2.5 5.5E-05 49.1 14.9 36 118-154 957-992 (1259)
15 KOG1144 Translation initiation 92.9 0.44 9.5E-06 55.1 9.0 69 307-387 566-645 (1064)
16 KOG2891 Surface glycoprotein [ 91.2 1.7 3.7E-05 45.2 10.3 25 78-102 267-293 (445)
17 KOG2140 Uncharacterized conser 90.6 0.42 9E-06 53.4 5.6 169 222-442 139-312 (739)
18 PF09726 Macoilin: Transmembra 89.5 21 0.00045 41.7 18.3 42 234-275 616-657 (697)
19 PRK09510 tolA cell envelope in 87.6 29 0.00063 37.8 16.8 20 316-336 347-366 (387)
20 COG4942 Membrane-bound metallo 87.1 53 0.0012 36.2 20.6 26 79-104 164-190 (420)
21 KOG3054 Uncharacterized conser 86.7 4.7 0.0001 41.4 9.5 12 285-296 262-273 (299)
22 COG3064 TolA Membrane protein 85.7 6.5 0.00014 41.7 10.2 17 133-149 145-162 (387)
23 KOG2072 Translation initiation 85.1 28 0.00061 41.2 15.8 28 75-102 554-581 (988)
24 PRK11637 AmiB activator; Provi 84.9 63 0.0014 35.1 21.7 31 40-70 104-135 (428)
25 PF15346 ARGLU: Arginine and g 84.8 37 0.00081 32.4 14.3 11 102-112 61-71 (149)
26 PF15236 CCDC66: Coiled-coil d 84.3 32 0.0007 33.1 13.5 30 73-102 46-75 (157)
27 KOG2002 TPR-containing nuclear 83.4 23 0.0005 42.5 14.4 17 21-37 773-789 (1018)
28 KOG4364 Chromatin assembly fac 83.4 19 0.00042 41.6 13.3 10 485-494 769-778 (811)
29 KOG1144 Translation initiation 79.9 11 0.00024 44.3 10.0 48 78-130 213-260 (1064)
30 KOG4364 Chromatin assembly fac 79.3 36 0.00079 39.5 13.7 7 355-361 559-565 (811)
31 PF09726 Macoilin: Transmembra 75.3 1.3E+02 0.0029 35.2 17.3 39 64-102 431-470 (697)
32 KOG3054 Uncharacterized conser 74.7 30 0.00065 35.7 10.4 30 79-111 114-143 (299)
33 KOG2072 Translation initiation 72.0 2.3E+02 0.005 34.1 18.1 23 45-67 702-724 (988)
34 COG1196 Smc Chromosome segrega 71.5 2.6E+02 0.0057 34.6 23.9 61 8-68 226-286 (1163)
35 PF05672 MAP7: MAP7 (E-MAP-115 70.7 1.1E+02 0.0024 29.9 15.3 41 115-158 101-141 (171)
36 KOG3654 Uncharacterized CH dom 69.6 15 0.00032 41.3 7.4 30 132-162 424-454 (708)
37 PF06637 PV-1: PV-1 protein (P 69.5 1E+02 0.0022 33.9 13.3 43 106-150 309-351 (442)
38 KOG2002 TPR-containing nuclear 64.4 1.7E+02 0.0037 35.6 15.0 18 36-53 755-772 (1018)
39 PLN03086 PRLI-interacting fact 64.4 21 0.00046 40.7 7.7 20 319-338 200-219 (567)
40 KOG2891 Surface glycoprotein [ 63.1 1.1E+02 0.0023 32.4 11.7 22 85-106 331-352 (445)
41 COG5269 ZUO1 Ribosome-associat 57.5 60 0.0013 34.2 8.8 36 120-155 249-284 (379)
42 TIGR03319 YmdA_YtgF conserved 56.3 3.4E+02 0.0075 30.7 17.5 11 315-325 307-317 (514)
43 PLN02316 synthase/transferase 56.1 26 0.00057 42.7 7.0 16 374-389 689-704 (1036)
44 PF15437 PGBA_C: Plasminogen-b 55.5 35 0.00077 29.6 5.7 37 109-147 47-83 (86)
45 KOG2404 Fumarate reductase, fl 54.4 1E+02 0.0023 33.5 10.2 100 394-500 258-394 (477)
46 TIGR01069 mutS2 MutS2 family p 50.9 1.2E+02 0.0025 36.0 11.0 23 93-115 526-548 (771)
47 KOG3634 Troponin [Cytoskeleton 50.3 1.8E+02 0.004 31.3 11.1 15 261-275 233-247 (361)
48 KOG4661 Hsp27-ERE-TATA-binding 48.8 2.2E+02 0.0048 33.0 12.0 16 85-100 620-635 (940)
49 PRK00409 recombination and DNA 48.6 1.4E+02 0.0031 35.3 11.3 7 93-99 531-537 (782)
50 PRK13428 F0F1 ATP synthase sub 46.2 2E+02 0.0044 31.8 11.4 16 465-480 384-399 (445)
51 KOG4691 Uncharacterized conser 46.0 3.3E+02 0.0072 27.4 12.2 46 58-104 61-107 (227)
52 TIGR01069 mutS2 MutS2 family p 45.3 3.4E+02 0.0073 32.3 13.6 6 334-339 748-753 (771)
53 KOG0982 Centrosomal protein Nu 44.3 2.8E+02 0.006 31.0 11.7 59 51-110 210-283 (502)
54 PF12037 DUF3523: Domain of un 43.9 4.1E+02 0.0089 28.0 19.8 10 10-19 40-49 (276)
55 PF07046 CRA_rpt: Cytoplasmic 43.3 72 0.0016 24.2 5.0 18 133-150 10-27 (42)
56 PF07349 DUF1478: Protein of u 42.7 23 0.00049 33.8 2.9 39 395-433 35-74 (162)
57 COG4942 Membrane-bound metallo 40.4 5.6E+02 0.012 28.5 18.2 22 94-115 194-215 (420)
58 KOG4691 Uncharacterized conser 38.2 4.4E+02 0.0094 26.6 13.0 35 11-50 61-95 (227)
59 PF11208 DUF2992: Protein of u 37.7 98 0.0021 29.0 6.3 27 65-91 66-98 (132)
60 PF14362 DUF4407: Domain of un 36.4 4.9E+02 0.011 26.7 14.1 16 320-335 276-291 (301)
61 PF06936 Selenoprotein_S: Sele 36.4 94 0.002 30.8 6.2 7 104-110 84-90 (190)
62 PRK02292 V-type ATP synthase s 35.9 3.7E+02 0.0081 25.6 10.2 24 358-381 149-174 (188)
63 PF15236 CCDC66: Coiled-coil d 34.5 4.4E+02 0.0094 25.5 14.0 22 59-80 49-70 (157)
64 KOG3223 Uncharacterized conser 34.4 3.2E+02 0.007 27.5 9.4 21 134-154 46-66 (221)
65 PRK10361 DNA recombination pro 34.0 7.4E+02 0.016 28.0 17.3 44 234-277 141-198 (475)
66 KOG0742 AAA+-type ATPase [Post 33.3 7.7E+02 0.017 28.0 18.4 63 428-490 467-540 (630)
67 KOG1363 Predicted regulator of 32.4 3.8E+02 0.0082 30.1 10.8 55 47-102 260-319 (460)
68 KOG1363 Predicted regulator of 32.0 2.1E+02 0.0046 32.1 8.7 8 87-94 322-329 (460)
69 PF03879 Cgr1: Cgr1 family; I 31.3 3.4E+02 0.0075 24.7 8.4 22 109-130 47-68 (108)
70 COG5269 ZUO1 Ribosome-associat 30.7 5.7E+02 0.012 27.2 10.9 13 285-297 357-369 (379)
71 PF15272 BBP1_C: Spindle pole 30.6 5.7E+02 0.012 25.7 14.5 59 16-76 32-94 (196)
72 TIGR00570 cdk7 CDK-activating 29.6 3.2E+02 0.0068 29.2 9.1 60 87-154 126-185 (309)
73 PF12128 DUF3584: Protein of u 29.4 1.2E+03 0.026 29.1 21.1 182 34-273 602-783 (1201)
74 PF11214 Med2: Mediator comple 28.9 58 0.0012 29.5 3.1 15 74-88 58-72 (105)
75 KOG3859 Septins (P-loop GTPase 28.3 7.8E+02 0.017 26.6 12.5 44 67-110 318-362 (406)
76 PLN02316 synthase/transferase 27.3 1.6E+02 0.0034 36.3 7.2 12 69-80 125-136 (1036)
77 TIGR01791 CM_archaeal chorisma 27.1 3.7E+02 0.008 22.4 7.9 63 24-86 2-83 (83)
78 PF07046 CRA_rpt: Cytoplasmic 27.0 2.6E+02 0.0057 21.3 5.7 9 145-153 28-36 (42)
79 PTZ00491 major vault protein; 27.0 8.6E+02 0.019 29.5 12.8 104 60-164 640-773 (850)
80 PRK09174 F0F1 ATP synthase sub 26.5 6.4E+02 0.014 25.0 14.6 21 90-110 99-119 (204)
81 TIGR02168 SMC_prok_B chromosom 26.1 1.2E+03 0.026 27.9 21.2 239 24-274 799-1048(1179)
82 PRK06231 F0F1 ATP synthase sub 25.8 6.6E+02 0.014 24.8 11.8 85 85-170 79-167 (205)
83 smart00582 RPR domain present 25.1 3.7E+02 0.0079 23.5 7.6 47 407-453 37-84 (121)
84 KOG1087 Cytosolic sorting prot 25.0 4.7E+02 0.01 29.5 9.9 39 399-437 34-74 (470)
85 KOG0161 Myosin class II heavy 24.8 1.8E+03 0.039 29.6 22.7 224 1-273 1272-1503(1930)
86 PF13904 DUF4207: Domain of un 24.8 7.7E+02 0.017 25.3 14.0 101 64-167 88-225 (264)
87 PF11207 DUF2989: Protein of u 24.2 1.1E+02 0.0023 30.8 4.3 98 322-426 36-145 (203)
88 KOG4326 Mitochondrial F1F0-ATP 24.0 2.8E+02 0.0062 23.7 6.1 11 120-130 45-55 (81)
89 PF05672 MAP7: MAP7 (E-MAP-115 24.0 7E+02 0.015 24.5 10.9 6 222-227 146-151 (171)
90 PRK00106 hypothetical protein; 23.7 1.1E+03 0.025 26.9 17.5 9 468-476 454-462 (535)
91 PF06098 Radial_spoke_3: Radia 22.9 4.2E+02 0.0092 28.0 8.6 55 99-153 159-213 (291)
92 PF00769 ERM: Ezrin/radixin/mo 21.6 8.7E+02 0.019 24.7 13.7 23 217-239 183-206 (246)
93 PTZ00399 cysteinyl-tRNA-synthe 21.3 1.5E+02 0.0032 34.5 5.4 11 179-189 614-624 (651)
94 PF04696 Pinin_SDK_memA: pinin 21.2 6.6E+02 0.014 23.2 11.3 33 73-105 12-44 (131)
95 PF04747 DUF612: Protein of un 20.9 8.9E+02 0.019 26.9 10.5 14 113-126 112-125 (510)
96 cd03200 GST_C_JTV1 GST_C famil 20.4 2.6E+02 0.0057 23.7 5.5 50 406-455 2-51 (96)
No 1
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=100.00 E-value=9.3e-82 Score=664.34 Aligned_cols=448 Identities=34% Similarity=0.489 Sum_probs=389.6
Q ss_pred CccccchhhHHHHHhhhcccchhHHHHHHHHHHHHHHHh-HHhhhhHHHHhhhhhhhhhHHHHHhhhHHHHHHHHHHHHH
Q 009839 1 MDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDN 79 (524)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-e~~~~~~~~~~~~k~~~~~~~~~~~~d~~~qr~~~e~~~~ 79 (524)
|+++|+..++ .++|++.++.++|++++.+..-.++ ++..+++....++||.++|.+..+|+ ..+|+++.+.+|+
T Consensus 123 l~~L~~~~~~----~~q~~~~~~~~~~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~ 197 (591)
T KOG2412|consen 123 LNKLGLKESA----INQRQTEIKSDIRAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDT 197 (591)
T ss_pred HHHHHHhhcc----chhhhHhHHhhhhhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4566666666 7999999999999999999888777 89999999999999999999999999 9999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 80 HLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAERE 159 (524)
Q Consensus 80 ~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~e 159 (524)
|+..+||.++..+||.+|+++++++-+||+|+.++.||++.+.+.+.++.+++++.+++|+++. .++|++++..+
T Consensus 198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqe---ee~ke~e~~~~-- 272 (591)
T KOG2412|consen 198 ELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQE---EERKEAEEQAE-- 272 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999999999988733 22233322111
Q ss_pred HhhhhhhhhccccccccCC-CCCCCcccccccccCCCCCCccchhhhh--HHhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 009839 160 AAENSKRITAGVSQDGACG-RQPDDSSVIAGAQSRGSRSDGTKKLQSA--VRATESALNIEQKRLQKLKELDEENQSLKL 236 (524)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~~--~~~~~~a~~~~~~R~~~Lkel~~~~~~lks 236 (524)
+.++...+++.... +++..+++.++ ++...+|||+ ..++.+.+....-+.++.-+
T Consensus 273 -----k~~q~~~~~eek~a~qk~~~~~~~~~-------~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~---------- 330 (591)
T KOG2412|consen 273 -----KEVQDPKAHEEKLAEQKAVIEKVTTS-------SASDSQMFWNSQDAIAQSKLDLVNPILKKDEE---------- 330 (591)
T ss_pred -----HHhcCchhccccccccccccccccCC-------chhHHHhhhhHHHHHHHHHHHHHhhhhhHHHH----------
Confidence 12223333444433 55566666666 5578889998 47778888887777665444
Q ss_pred cccccccccccccccccccccCchhh-HHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhcccCC---CCCcchhH
Q 009839 237 SSNEDFSGYEKDISRLIRQIRGLKDN-VRTKASELVKILNNPL-----CPQSISLATFSKKVVSRCETP---DDNVAMSC 307 (524)
Q Consensus 237 ~lkk~~~~~kRqI~~kIGQLtns~~q-I~~is~eL~~lL~~~~-----~p~~~~Ln~lAKaIV~QaEt~---~~~sAfPl 307 (524)
+++-..+++|.||+.|||||++..| |..|++.|.+++++.+ +.+.||+|+|||++|+|+|++ +|.+||||
T Consensus 331 -lk~~~~~~kr~in~~~~qis~~~~q~L~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPl 409 (591)
T KOG2412|consen 331 -LKNYNQSLKRAINPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPL 409 (591)
T ss_pred -HHHHHHHHHhhcCCChhhhhhccHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence 4445568899999999999999988 9999999999998753 457899999999999999994 67899999
Q ss_pred HHHHHHHHhhCccHHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHH
Q 009839 308 GYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAA 386 (524)
Q Consensus 308 A~V~v~L~~~~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~-~dg~~Ese~~Yl~RMsGI~rLYAA 386 (524)
|.|++.||++||+|+|+|||||||+|||+||||++. ++|.|.++|||+. |+|+||..|.|++||+||+|||||
T Consensus 410 a~V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAA 483 (591)
T KOG2412|consen 410 AKVILYIWSQFPDVGDLLLARLHKKCPYVVPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAA 483 (591)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHhcCCccccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHH
Confidence 999999999999999999999999999999999864 3699999999997 678999999999999999999999
Q ss_pred HHhcCCC----CCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009839 387 LIQTEIP----GVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAR 462 (524)
Q Consensus 387 I~qt~~~----~~~nP~gi~~~W~WLARiLN~~P~~~ita~vL~afLevAG~~L~~~YG~QF~KLL~lI~~d~~p~l~~~ 462 (524)
|+++++| +.-||||+.++|.|||||||+.|.+++||++|.+||++||+.|++.||+||+|||.+|.++|+|++.++
T Consensus 484 Ii~l~~p~~~~~~~hpf~i~~gW~wLA~iln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~ 563 (591)
T KOG2412|consen 484 IIQLDIPVGNATNVHPFGINHGWAWLARILNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAK 563 (591)
T ss_pred HHHhcccccCCCCCCcchhhcccHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999986 345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhcccccCCC
Q 009839 463 EDSKLNLVIAEIQYYIEDKKFLEEPE 488 (524)
Q Consensus 463 ~~~~~~~~v~rLe~~Led~~~l~ePe 488 (524)
++.|..++...|+.|+ |+++...|+
T Consensus 564 ~~~g~~rl~ill~~~l-~~q~~~~~~ 588 (591)
T KOG2412|consen 564 KDTGDLRLRILLEAWL-DRQYLKEPE 588 (591)
T ss_pred ccccchHHHHHHHHHH-Hhhhhcccc
Confidence 8777788888999999 788888887
No 2
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=100.00 E-value=5.4e-62 Score=485.99 Aligned_cols=230 Identities=36% Similarity=0.553 Sum_probs=183.2
Q ss_pred HHHHHHHHhhh---ccccccccccccccccccccccccCchhhHHHHHHHHHHHhcCC--------------CChHHHHH
Q 009839 223 KLKELDEENQS---LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP--------------LCPQSISL 285 (524)
Q Consensus 223 ~Lkel~~~~~~---lks~lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~~~--------------~~p~~~~L 285 (524)
+++++++.+.. -++.+|+.++++||+||++|||||++.+||.+|+++|.++|++. ++++.|+|
T Consensus 4 ~i~~~k~~~~~~~~~d~~lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l 83 (256)
T PF07817_consen 4 KIKQIKQALKEPVKSDPSLKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLL 83 (256)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHH
Confidence 44555555543 33578999999999999999999999999999999999995532 24577899
Q ss_pred HHHHHHHHhcccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCccc
Q 009839 286 ATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE 362 (524)
Q Consensus 286 n~lAKaIV~QaEt~---~~~sAfPlA~V~v~L~~~~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~ 362 (524)
|+|||+||+|||++ ++++|||+|.|++.||+.||+|+|+||||||++|||+||+|+++. .++|+|+|+++|||+.
T Consensus 84 ~~lAk~iv~Q~e~ev~~~~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~--~~~~~e~~~k~lGyk~ 161 (256)
T PF07817_consen 84 NFLAKKIVSQAETEVSANPESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFT--CDQSTEEYRKRLGYKR 161 (256)
T ss_dssp HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T-------SSHHHHHHTT--B
T ss_pred HHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCccc--CCCCHHHHHHHcCCcc
Confidence 99999999999995 578999999999999999999999999999999999999998874 3568899999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHH
Q 009839 363 EDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ---NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKK 439 (524)
Q Consensus 363 ~dg~~Ese~~Yl~RMsGI~rLYAAI~qt~~~~~~---nP~gi~~~W~WLARiLN~~P~~~ita~vL~afLevAG~~L~~~ 439 (524)
+||+||++++|++||+||++|||||+++++++.+ ||||++++|+|||||||++|.+++|+++|++||++||++|+++
T Consensus 162 ~~~~~E~~~~y~~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~lN~~p~~~~~~~lL~~~Le~ag~~l~~~ 241 (256)
T PF07817_consen 162 DDGGWESEDQYLKRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARILNLPPAPNITATLLHSFLEVAGFRLLQI 241 (256)
T ss_dssp -TTSB--HHHHHHHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS-CC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 8777999999999999999999999999987432 7999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009839 440 YKSQFRKILDNIYDN 454 (524)
Q Consensus 440 YG~QF~KLL~lI~~d 454 (524)
||+||.|||.+|.++
T Consensus 242 Yg~Qf~Kll~~i~~~ 256 (256)
T PF07817_consen 242 YGRQFVKLLQLISEH 256 (256)
T ss_dssp HTHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999864
No 3
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.06 E-value=0.017 Score=65.98 Aligned_cols=54 Identities=39% Similarity=0.481 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 009839 101 SDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK-RAALEAEKRAAKE 154 (524)
Q Consensus 101 ~~~a~EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~-k~~~ea~~~~~~~ 154 (524)
+|+|.-|-+|+|-..++.++.+||+++++||+.|+|+||++ ++..|-+.+.+.+
T Consensus 930 qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 930 QELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444555666777777888899999999999998888776 4444444444444
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.024 Score=64.77 Aligned_cols=9 Identities=0% Similarity=0.143 Sum_probs=3.7
Q ss_pred HHHHHHhcc
Q 009839 288 FSKKVVSRC 296 (524)
Q Consensus 288 lAKaIV~Qa 296 (524)
+.+.|-+|+
T Consensus 543 irq~ikdql 551 (1118)
T KOG1029|consen 543 IRQAIKDQL 551 (1118)
T ss_pred HHHHHHHHH
Confidence 334444444
No 5
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.30 E-value=0.076 Score=58.88 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=62.3
Q ss_pred hhhhhHHHHHhhhHHHHH--HHHHHHHHhHH-HHHHhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 54 DRDMRREMDRKNDTVYQR--KIAEALDNHLT-AVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAE 130 (524)
Q Consensus 54 ~~~~~~~~~~~~d~~~qr--~~~e~~~~~~~-~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e~a~~e~k~~qek~k~e~e 130 (524)
..+.+.++..-.+..++| ++..++...+. .+|+....+...|.-+.|++ .++++++ |-+|+ ++++.|
T Consensus 166 ~~~l~~~~~e~~~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~---~~e~kr~-----Eaerk--~~~~qE 235 (591)
T KOG2412|consen 166 NIRLVEKLSETRKEVKRRLLEEQNQVLQSLDTELQAIQREKQRKEQIRERKE---RSEEKRE-----EAERK--RRAHQE 235 (591)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhh-----hhHHH--HHHHHH
Confidence 445566666667777777 66666666666 67777777766666666666 3332221 22222 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccCCCCCCCcccccc
Q 009839 131 MQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAG 189 (524)
Q Consensus 131 ~~~~~~~ee~~k~~~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (524)
...+++.+++++... +.-++.++++|.|++++...+.-...-.++.-.+...++...+
T Consensus 236 e~Rqk~d~~~~~~eq-ekiR~~eekqeee~ke~e~~~~k~~q~~~~~eek~a~qk~~~~ 293 (591)
T KOG2412|consen 236 ELRQKEDEEAELQEQ-EKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEKLAEQKAVIE 293 (591)
T ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhccccccccccccc
Confidence 224444444444322 2223333345555555555433222222223355556666555
No 6
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=96.16 E-value=0.069 Score=49.71 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=114.2
Q ss_pred cccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHHhhCc-cHHHHH
Q 009839 247 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-QVMDIL 325 (524)
Q Consensus 247 RqI~~kIGQLtns~~qI~~is~eL~~lL~~~~~p~~~~Ln~lAKaIV~QaEt~~~~sAfPlA~V~v~L~~~~P-ef~diL 325 (524)
|+|+--+|.|| ...+..++.+|.++.... ....+..+++.|+..+... |..+-.+|.++..|-..+| +|+..|
T Consensus 2 r~v~~~lnklt--~~n~~~~~~~l~~~~~~~---~~~~~~~i~~~i~~~a~~~-~~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 2 RKVRGILNKLT--PSNFESIIDELIKLNWSD---DPETLKEIVKLIFEKAVEE-PNFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHHHCS--STTHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHCC--HHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhhhhcC-chHHHHHHHHHHHHhccchhhHHHHH
Confidence 56777788888 455667777777776542 2345777788887776553 2467788889999999999 999998
Q ss_pred HHHhhhhceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH
Q 009839 326 LGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGW 405 (524)
Q Consensus 326 lArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~~Ese~~Yl~RMsGI~rLYAAI~qt~~~~~~nP~gi~~~W 405 (524)
+.+++...-...+.. .. + +....+..|+.|.+++.+-+..... .+....-
T Consensus 76 l~~~~~~f~~~~~~~--------~~-~---------------~~~~~~~~~~~~~~~fl~eL~~~~v------v~~~~i~ 125 (209)
T PF02854_consen 76 LNRCQEEFEERYSNE--------EL-E---------------ENRQSSKQRRRGNIRFLAELFNFGV------VSEKIIF 125 (209)
T ss_dssp HHHHHHHHHHHT-HH--------HH-H---------------HHHHHHHHHHHHHHHHHHHHHHTTS------SCHHHHH
T ss_pred HHHHHHHHHHhhhhh--------hH-H---------------HHHHHHHHHHhhhhhHHHhhHhhcc------ccchhHH
Confidence 888765542211000 00 0 1234667899999999999987542 2222333
Q ss_pred HHHHHHhCCC------CCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 009839 406 AWLARFLNAL------PANIYTAVALNAFLQLAGFALF--KKYKSQFRKILDNIYDNFL 456 (524)
Q Consensus 406 ~WLARiLN~~------P~~~ita~vL~afLevAG~~L~--~~YG~QF~KLL~lI~~d~~ 456 (524)
..+..++... |.......++..+|..+|..|. ......+..++..+.....
T Consensus 126 ~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~ 184 (209)
T PF02854_consen 126 DILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYAN 184 (209)
T ss_dssp HHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence 3444444431 2234568888999999999999 6666666666666555444
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.13 E-value=0.058 Score=64.32 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009839 113 RALQEEKIRQEKVKAEAE 130 (524)
Q Consensus 113 ~a~~e~k~~qek~k~e~e 130 (524)
+..+++|+|+|+.+.|.|
T Consensus 475 r~er~erer~Erer~erE 492 (1021)
T PTZ00266 475 RMERIERERLERERLERE 492 (1021)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 8
>PTZ00121 MAEBL; Provisional
Probab=96.10 E-value=0.13 Score=62.36 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.5
Q ss_pred hhhHHHHHhhhHH
Q 009839 56 DMRREMDRKNDTV 68 (524)
Q Consensus 56 ~~~~~~~~~~d~~ 68 (524)
++|++=+.|.+.+
T Consensus 1132 eARrae~~Rr~Ee 1144 (2084)
T PTZ00121 1132 EARKAEDARKAEE 1144 (2084)
T ss_pred HHhhHHHHHHHHH
Confidence 4444444444433
No 9
>PTZ00121 MAEBL; Provisional
Probab=95.77 E-value=0.68 Score=56.63 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHHHHHhh
Q 009839 82 TAVQRDHELKSQIEERKIR 100 (524)
Q Consensus 82 ~~~q~~~e~~~q~ee~~~r 100 (524)
...+|.-++|.-.|+|++.
T Consensus 1185 EE~Rr~EElRraEEaRkaE 1203 (2084)
T PTZ00121 1185 EEVRKAEELRKAEDARKAE 1203 (2084)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444455444444433
No 10
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.43 E-value=0.11 Score=62.22 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHhhh
Q 009839 445 RKILDNIYDNFLNALK 460 (524)
Q Consensus 445 ~KLL~lI~~d~~p~l~ 460 (524)
.|||.---..+..+|.
T Consensus 916 ~~~~~~~~~~~~~~~~ 931 (1021)
T PTZ00266 916 RKMLMEKEKGIYDRLR 931 (1021)
T ss_pred HHHHHHHhhhHHHHHh
Confidence 4444333334444443
No 11
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=94.29 E-value=1.4 Score=41.06 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=105.6
Q ss_pred cccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHHhhCccHHHHHH
Q 009839 247 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 326 (524)
Q Consensus 247 RqI~~kIGQLtns~~qI~~is~eL~~lL~~~~~p~~~~Ln~lAKaIV~QaEt~~~~sAfPlA~V~v~L~~~~Pef~diLl 326 (524)
++|+.-+|.|| .+.+..++.+|..+..+. + -....+++.++..+..+ |...-.+|.++..+...+|+|+..|+
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~--~--~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~~f~~~ll 74 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD--K--NLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNPDFGSLLL 74 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887 468888888888888652 2 24555666666666553 24567778888888888888877776
Q ss_pred HHhhhhceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHH
Q 009839 327 GEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWA 406 (524)
Q Consensus 327 Arl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~~Ese~~Yl~RMsGI~rLYAAI~qt~~~~~~nP~gi~~~W~ 406 (524)
..++..- -.+. + +.......|..|.+++.+-+..... .+....-.
T Consensus 75 ~~~~~~f--~~~~------------e---------------~~~~~~~~~~~~~i~fl~eL~~~~~------i~~~~i~~ 119 (200)
T smart00543 75 ERLQEEF--EKGL------------E---------------SEEESDKQRRLGLVRFLGELYNFQV------LTSKIILE 119 (200)
T ss_pred HHHHHHH--HHHH------------H---------------HHHHHhhhhHHhHHHHHHHHHHccc------CcHHHHHH
Confidence 6654431 0000 0 0112345788999999998876532 11222333
Q ss_pred HHHHHhCCC--C---CccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009839 407 WLARFLNAL--P---ANIYTAVALNAFLQLAGFALF-KKYKSQFRKILDNIYDNF 455 (524)
Q Consensus 407 WLARiLN~~--P---~~~ita~vL~afLevAG~~L~-~~YG~QF~KLL~lI~~d~ 455 (524)
.+..+++.. | ..+....++..+|..+|..|. .....-+..++..+...+
T Consensus 120 ~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~ 174 (200)
T smart00543 120 LLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYL 174 (200)
T ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHH
Confidence 444444431 1 134678899999999999999 666666666666655544
No 12
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=93.75 E-value=5.4 Score=42.24 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=15.7
Q ss_pred hhhceeeccccccccccccccHHHHHHHcCcccCCCc
Q 009839 330 HRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGK 366 (524)
Q Consensus 330 ~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~ 366 (524)
-+.|.+-|-+.|+ -| +++|+..+|.
T Consensus 325 gK~C~l~ikL~pd------Gt------l~~~~~~~Gd 349 (387)
T COG3064 325 GKTCRLRIKLAPD------GT------LLDIKPEGGD 349 (387)
T ss_pred CceeEEEEEEcCC------cc------eeeccccCCC
Confidence 4678888877653 12 5667776654
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=0.92 Score=52.54 Aligned_cols=7 Identities=14% Similarity=-0.150 Sum_probs=3.0
Q ss_pred ceeeccc
Q 009839 333 CIYTVPK 339 (524)
Q Consensus 333 CP~lVP~ 339 (524)
|-.+.||
T Consensus 696 yrAly~F 702 (1118)
T KOG1029|consen 696 YRALYPF 702 (1118)
T ss_pred Eeeeccc
Confidence 4444444
No 14
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.90 E-value=2.5 Score=49.12 Aligned_cols=36 Identities=42% Similarity=0.450 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 118 EKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKE 154 (524)
Q Consensus 118 ~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~ 154 (524)
+.+++.|.|+|.|- .+.+.|+++..+.|-.++.++|
T Consensus 957 k~e~e~kRK~eEeq-r~~qee~e~~l~~e~q~qla~e 992 (1259)
T KOG0163|consen 957 KAEMETKRKAEEEQ-RKAQEEEERRLALELQEQLAKE 992 (1259)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHH
Confidence 34455566666553 3334444554445544444444
No 15
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=92.86 E-value=0.44 Score=55.13 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=40.1
Q ss_pred HHHHHHHHHhh-CccHHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCccc-CCCcc---------cchhhHHH
Q 009839 307 CGYVIVLVASQ-VPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKI---------ESLENYLS 375 (524)
Q Consensus 307 lA~V~v~L~~~-~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~-~dg~~---------Ese~~Yl~ 375 (524)
||.+++-|+.+ -|.-..-|-=.=.++|||+|...- --|++||+. .++.+ -....|..
T Consensus 566 ~aIlvvdImhGlepqtiESi~lLR~rktpFivALNK------------iDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 566 LAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNK------------IDRLYGWKSCPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred eEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehh------------hhhhcccccCCCchHHHHHHHhhHHHHHHHHH
Confidence 33344444433 233333333233688999997751 125788885 33321 23568999
Q ss_pred HHHHHHHHHHHH
Q 009839 376 RLKSYMRLYAAL 387 (524)
Q Consensus 376 RMsGI~rLYAAI 387 (524)
|+..|+-=|+-.
T Consensus 634 R~~~ii~efaEQ 645 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQ 645 (1064)
T ss_pred HHHHHHHHHHHc
Confidence 999998777654
No 16
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.18 E-value=1.7 Score=45.22 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=20.4
Q ss_pred HHhHHHHHHhH--HHHHHHHHHHhhch
Q 009839 78 DNHLTAVQRDH--ELKSQIEERKIRSD 102 (524)
Q Consensus 78 ~~~~~~~q~~~--e~~~q~ee~~~r~~ 102 (524)
..|||.||=.. |-|+|||-.|.|++
T Consensus 267 srhlsevqiakraeerrqieterlrqe 293 (445)
T KOG2891|consen 267 SRHLSEVQIAKRAEERRQIETERLRQE 293 (445)
T ss_pred hhhhhHHHHHHHHHHHhhhhHHHHhhh
Confidence 46999999543 57889999999988
No 17
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=90.59 E-value=0.42 Score=53.38 Aligned_cols=169 Identities=18% Similarity=0.277 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhhcccc--ccccccccccccccccccccCchhhHHHHHHHHHH--HhcCCCChHHHHHHHHHHHHHh-cc
Q 009839 222 QKLKELDEENQSLKLS--SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVK--ILNNPLCPQSISLATFSKKVVS-RC 296 (524)
Q Consensus 222 ~~Lkel~~~~~~lks~--lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~--lL~~~~~p~~~~Ln~lAKaIV~-Qa 296 (524)
.+|+.+.+++.+..+. ...+|-.+|+.|++.||.++.+ .|..|..+|.+ +|.+ -++|++.||. |+
T Consensus 139 aKL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~s--Ni~~ii~eLfqeNiirg--------Rgl~crsv~~aq~ 208 (739)
T KOG2140|consen 139 AKLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNAS--NIQEIIRELFQENIIRG--------RGLLCRSVMQAQA 208 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHH--HHHHHHHHHHHHHHHhc--------cchhHHHHHHHHh
Confidence 4666677777776652 4578889999999999998754 34444443332 2222 4556777665 55
Q ss_pred cCCCCCcchhHHHHHHHHHhhCccHHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHH
Q 009839 297 ETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSR 376 (524)
Q Consensus 297 Et~~~~sAfPlA~V~v~L~~~~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~~Ese~~Yl~R 376 (524)
-+|. ..-.+|.+++.|-+.||++|++|+-+|.. -|. -+|+..| +=
T Consensus 209 asp~--ft~vyaALvAviNskfP~IgElLlkrLil------qf~-----------------r~f~RnD----------k~ 253 (739)
T KOG2140|consen 209 ASPG--FTPVYAALVAVINSKFPQIGELLLKRLIL------QFK-----------------RSFRRND----------KV 253 (739)
T ss_pred cCCC--CcHHHHHHHHHHccCCchHHHHHHHHHHH------HHH-----------------HHhcccc----------hH
Confidence 5553 55667888889999999999999988742 221 1233332 23
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 009839 377 LKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKS 442 (524)
Q Consensus 377 MsGI~rLYAAI~qt~~~~~~nP~gi~~~W~WLARiLN~~P~~~ita~vL~afLevAG~~L~~~YG~ 442 (524)
|+|-+.=|.|++... +-.|-+ -+-..|.-+|-. |-+ -...|..+||..||..|..+=.+
T Consensus 254 ~c~~~~kfiahLinq----~VahEI-v~Leil~lLLe~-PTd-dSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 254 SCLNASKFIAHLINQ----QVAHEI-VALEILTLLLER-PTD-DSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHhcC-CCC-chHHHHHHHHHHHHHHHHHhChH
Confidence 444444444544321 000111 245666777765 433 34566678999999998866443
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.51 E-value=21 Score=41.71 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=35.1
Q ss_pred ccccccccccccccccccccccccCchhhHHHHHHHHHHHhc
Q 009839 234 LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN 275 (524)
Q Consensus 234 lks~lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~ 275 (524)
+|..|=.-+|+-||+|...-|||..--.+|......|.+++.
T Consensus 616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666789999999999999998888888888888888775
No 19
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=87.62 E-value=29 Score=37.85 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=9.5
Q ss_pred hhCccHHHHHHHHhhhhceee
Q 009839 316 SQVPQVMDILLGEFHRACIYT 336 (524)
Q Consensus 316 ~~~Pef~diLlArl~kkCP~l 336 (524)
+++|.|-.-.+.- .+.+||.
T Consensus 347 SGd~aldrAA~~A-ar~a~lP 366 (387)
T PRK09510 347 GGDPALCQAALAA-AKTAKIP 366 (387)
T ss_pred CCCHHHHHHHHHH-HHcCCCC
Confidence 4455554444444 4455443
No 20
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.06 E-value=53 Score=36.25 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=12.4
Q ss_pred HhHHHHHHhH-HHHHHHHHHHhhchHH
Q 009839 79 NHLTAVQRDH-ELKSQIEERKIRSDAA 104 (524)
Q Consensus 79 ~~~~~~q~~~-e~~~q~ee~~~r~~~a 104 (524)
+||.++|.+- .++..|+..+...+.+
T Consensus 164 ~~l~~~~~~l~~~~~~iaaeq~~l~~~ 190 (420)
T COG4942 164 DALKATLKQLAAVRAEIAAEQAELTTL 190 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554443 2455555555544433
No 21
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=4.7 Score=41.37 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=7.5
Q ss_pred HHHHHHHHHhcc
Q 009839 285 LATFSKKVVSRC 296 (524)
Q Consensus 285 Ln~lAKaIV~Qa 296 (524)
|+.+||-|-.+.
T Consensus 262 l~AVAkfIkqrG 273 (299)
T KOG3054|consen 262 LAAVAKFIKQRG 273 (299)
T ss_pred HHHHHHHHHHcC
Confidence 667777665544
No 22
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=85.66 E-value=6.5 Score=41.68 Aligned_cols=17 Identities=53% Similarity=0.532 Sum_probs=8.3
Q ss_pred HHHHHHHH-HHHHHHHHH
Q 009839 133 AKLRAEEA-KRAALEAEK 149 (524)
Q Consensus 133 ~~~~~ee~-~k~~~ea~~ 149 (524)
+++++|++ .|++.|+++
T Consensus 145 ~kk~aE~a~aka~aEA~k 162 (387)
T COG3064 145 QKKKAEAAKAKAAAEAAK 162 (387)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 44444444 455555555
No 23
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=85.08 E-value=28 Score=41.22 Aligned_cols=28 Identities=32% Similarity=0.187 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHhhch
Q 009839 75 EALDNHLTAVQRDHELKSQIEERKIRSD 102 (524)
Q Consensus 75 e~~~~~~~~~q~~~e~~~q~ee~~~r~~ 102 (524)
.++++-=++.||.+-.+|=||.|+..-|
T Consensus 554 ~~~~~v~~E~krilaRk~liE~rKe~~E 581 (988)
T KOG2072|consen 554 NYLKNVDKEHKRILARKSLIEKRKEDLE 581 (988)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444677888888888888886655
No 24
>PRK11637 AmiB activator; Provisional
Probab=84.93 E-value=63 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=12.5
Q ss_pred HHhhhhHHHHhhhhhh-hhhHHHHHhhhHHHH
Q 009839 40 ENEQSNSALAQVEKDR-DMRREMDRKNDTVYQ 70 (524)
Q Consensus 40 e~~~~~~~~~~~~k~~-~~~~~~~~~~d~~~q 70 (524)
++......|...++.. ..+..+.+++...|+
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444332 223334444444443
No 25
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=84.85 E-value=37 Score=32.43 Aligned_cols=11 Identities=64% Similarity=0.875 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 009839 102 DAAYEEAKRKE 112 (524)
Q Consensus 102 ~~a~EEa~~~e 112 (524)
.++++|+++++
T Consensus 61 ~~~l~e~r~ke 71 (149)
T PF15346_consen 61 EEALEEARRKE 71 (149)
T ss_pred HHHHHHHHhhh
Confidence 34445555543
No 26
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=84.28 E-value=32 Score=33.10 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHhhch
Q 009839 73 IAEALDNHLTAVQRDHELKSQIEERKIRSD 102 (524)
Q Consensus 73 ~~e~~~~~~~~~q~~~e~~~q~ee~~~r~~ 102 (524)
|.|-..+...++.--+.++-||||++..+.
T Consensus 46 ~eEre~rR~kq~E~q~ai~~QieEk~r~k~ 75 (157)
T PF15236_consen 46 IEERERRRQKQLEHQRAIKQQIEEKRRQKQ 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555556668888766665
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=83.43 E-value=23 Score=42.50 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHH
Q 009839 21 GVKEEIRNLISTLETQL 37 (524)
Q Consensus 21 ~~~~~~r~~~~~~~~~~ 37 (524)
+.-|+|+..+-.||.++
T Consensus 773 ~t~eev~~a~~~le~a~ 789 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEAR 789 (1018)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 66677777776666554
No 28
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=83.39 E-value=19 Score=41.59 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.6
Q ss_pred cCCCccccCC
Q 009839 485 EEPEGRTLQA 494 (524)
Q Consensus 485 ~ePeGr~m~~ 494 (524)
+.|+|-.++.
T Consensus 769 p~~d~~~~p~ 778 (811)
T KOG4364|consen 769 PDKDGKRLPK 778 (811)
T ss_pred CCCccccCCC
Confidence 4455666654
No 29
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=79.88 E-value=11 Score=44.30 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHhHHHHHHhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 78 DNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAE 130 (524)
Q Consensus 78 ~~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e~a~~e~k~~qek~k~e~e 130 (524)
-+|++++|..-+.+.+.|||+.|-+ ||.-|+ ..+|++.+.+..+++.|
T Consensus 213 ~Kgv~~~qe~La~~qe~eE~qkree---EE~~r~--eeEEer~~ee~E~~~eE 260 (1064)
T KOG1144|consen 213 PKGVRAMQEALAKRQEEEERQKREE---EERLRR--EEEEERRREEEEAQEEE 260 (1064)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4688888888887777777777766 444333 33334444444333333
No 30
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=79.27 E-value=36 Score=39.46 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=2.7
Q ss_pred HHHcCcc
Q 009839 355 YKTIGYR 361 (524)
Q Consensus 355 ~k~lGyr 361 (524)
+-=-||.
T Consensus 559 fVPhgyL 565 (811)
T KOG4364|consen 559 FVPHGYL 565 (811)
T ss_pred ecCCccc
Confidence 3333444
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.32 E-value=1.3e+02 Score=35.25 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHh-HHHHHHHHHHHhhch
Q 009839 64 KNDTVYQRKIAEALDNHLTAVQRD-HELKSQIEERKIRSD 102 (524)
Q Consensus 64 ~~d~~~qr~~~e~~~~~~~~~q~~-~e~~~q~ee~~~r~~ 102 (524)
|-|.|--|.+-+-|-.+++.+-.. +.+|+.+..-|...|
T Consensus 431 raeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene 470 (697)
T PF09726_consen 431 RAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENE 470 (697)
T ss_pred HHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 345555555555555555544442 445555544443333
No 32
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.73 E-value=30 Score=35.73 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=13.7
Q ss_pred HhHHHHHHhHHHHHHHHHHHhhchHHHHHHHHH
Q 009839 79 NHLTAVQRDHELKSQIEERKIRSDAAYEEAKRK 111 (524)
Q Consensus 79 ~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~ 111 (524)
+.-.-.||.-|.. -- |.|.|+++ +||++||
T Consensus 114 kqerr~qRe~E~~-eR-EeRk~ke~-~eE~erK 143 (299)
T KOG3054|consen 114 KQERRAQREAEEA-ER-EERKRKED-YEEAERK 143 (299)
T ss_pred HHHHHHHHHHHHH-HH-HHHhHHHH-HHHHHHh
Confidence 3344445555443 11 23334443 6676664
No 33
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=71.96 E-value=2.3e+02 Score=34.13 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=15.0
Q ss_pred hHHHHhhhhhhhhhHHHHHhhhH
Q 009839 45 NSALAQVEKDRDMRREMDRKNDT 67 (524)
Q Consensus 45 ~~~~~~~~k~~~~~~~~~~~~d~ 67 (524)
..+|--.+++-+.+.+=|+.|=.
T Consensus 702 ~EeiPL~e~~~~~~~~~d~e~~e 724 (988)
T KOG2072|consen 702 LEEIPLIEKAYDERQEEDRELYE 724 (988)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHH
Confidence 34566667777777777776655
No 34
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.52 E-value=2.6e+02 Score=34.59 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=44.8
Q ss_pred hhHHHHHhhhcccchhHHHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhhHHHHHhhhHH
Q 009839 8 DGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTV 68 (524)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~d~~ 68 (524)
+..++-..-.|...-.+++++.++.++..+.+-.+.-..+-.+|+..+....+++..++..
T Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556677888888888888888777777777788888887777777777665
No 35
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=70.71 E-value=1.1e+02 Score=29.94 Aligned_cols=41 Identities=46% Similarity=0.482 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 115 LQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAER 158 (524)
Q Consensus 115 ~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~ 158 (524)
.+|+.++..+-|-+++ ++-+.+.++.. +|.++--..+.+|+
T Consensus 101 e~Ee~e~~~kQkeeae--~ka~EeAek~r-~ErE~~~~q~eqER 141 (171)
T PF05672_consen 101 EQEEQERLQKQKEEAE--AKAREEAEKQR-KERERIMQQEEQER 141 (171)
T ss_pred hHHHHHHHHHhHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444444444 33333333333 55555555544333
No 36
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=69.56 E-value=15 Score=41.31 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 009839 132 QAKLRAEEAKRA-ALEAEKRAAKEAAEREAAE 162 (524)
Q Consensus 132 ~~~~~~ee~~k~-~~ea~~~~~~~~~e~e~~~ 162 (524)
++++++||+|.. .-|.+.++-. ++|=++++
T Consensus 424 earrkaeeer~~keee~arrefi-rqey~rrk 454 (708)
T KOG3654|consen 424 EARRKAEEERAPKEEEVARREFI-RQEYERRK 454 (708)
T ss_pred HHHHhhHhhhcchhhhhhHHHHH-HHHHHHHH
Confidence 366666666633 2333333222 44555554
No 37
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=69.52 E-value=1e+02 Score=33.86 Aligned_cols=43 Identities=37% Similarity=0.369 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 106 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKR 150 (524)
Q Consensus 106 EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~ 150 (524)
.|+.+--+|-||.+++-+|.-+..| ++.++|=.|++.+--++|
T Consensus 309 le~e~~l~a~qeakek~~KEAqare--aklqaec~rQ~qlaLEEK 351 (442)
T PF06637_consen 309 LEAEQGLQASQEAKEKAGKEAQARE--AKLQAECARQTQLALEEK 351 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 5555656677777777777666555 788888666443333333
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=64.45 E-value=1.7e+02 Score=35.63 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=10.2
Q ss_pred HHHhHHhhhhHHHHhhhh
Q 009839 36 QLISENEQSNSALAQVEK 53 (524)
Q Consensus 36 ~~~~e~~~~~~~~~~~~k 53 (524)
-+--..+++.+.+.|.+|
T Consensus 755 N~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 755 NLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 344455666666666555
No 39
>PLN03086 PRLI-interacting factor K; Provisional
Probab=64.43 E-value=21 Score=40.65 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=9.2
Q ss_pred ccHHHHHHHHhhhhceeecc
Q 009839 319 PQVMDILLGEFHRACIYTVP 338 (524)
Q Consensus 319 Pef~diLlArl~kkCP~lVP 338 (524)
++...+|-..|..-+..++|
T Consensus 200 ~npKavLE~~Lr~~stLT~G 219 (567)
T PLN03086 200 PNHKAVLETALRQHATLSED 219 (567)
T ss_pred ccHHHHHHHHhhcCccccCC
Confidence 33345555555444444433
No 40
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.06 E-value=1.1e+02 Score=32.44 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHhhchHHHH
Q 009839 85 QRDHELKSQIEERKIRSDAAYE 106 (524)
Q Consensus 85 q~~~e~~~q~ee~~~r~~~a~E 106 (524)
|--+|+..+.||.+.|-+.|.|
T Consensus 331 qekqeleqmaeeekkr~eeaee 352 (445)
T KOG2891|consen 331 QEKQELEQMAEEEKKREEEAEE 352 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777765543
No 41
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=57.48 E-value=60 Score=34.17 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 120 IRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEA 155 (524)
Q Consensus 120 ~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~ 155 (524)
+|++-++.+++.+.+.++|+++|++-|+++++-+.+
T Consensus 249 ereagar~~a~aa~k~kae~k~kae~ea~a~asa~a 284 (379)
T COG5269 249 EREAGARLKALAALKGKAEAKNKAEIEAEALASATA 284 (379)
T ss_pred chhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHH
Confidence 456666677776677777777787777777665543
No 42
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.26 E-value=3.4e+02 Score=30.68 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=4.7
Q ss_pred HhhCccHHHHH
Q 009839 315 ASQVPQVMDIL 325 (524)
Q Consensus 315 ~~~~Pef~diL 325 (524)
...||++..+|
T Consensus 307 ~~~~~~~~~~l 317 (514)
T TIGR03319 307 HGLHPELIKLL 317 (514)
T ss_pred CcCCHHHHHHH
Confidence 33345444433
No 43
>PLN02316 synthase/transferase
Probab=56.15 E-value=26 Score=42.66 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 009839 374 LSRLKSYMRLYAALIQ 389 (524)
Q Consensus 374 l~RMsGI~rLYAAI~q 389 (524)
..|+.-+++..+.+++
T Consensus 689 ~~RF~~F~~Aale~l~ 704 (1036)
T PLN02316 689 GERFGFFCHAALEFLL 704 (1036)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777776666654
No 44
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=55.52 E-value=35 Score=29.58 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 109 KRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEA 147 (524)
Q Consensus 109 ~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea 147 (524)
+++-.|.|-.++-+++||.-.| .-.++-|+|..|+|+
T Consensus 47 kKkAKAeqrA~EfEqRakehqE--rDEkElEERrKALe~ 83 (86)
T PF15437_consen 47 KKKAKAEQRAREFEQRAKEHQE--RDEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhc
Confidence 4555566666666666665555 444444555554554
No 45
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=54.38 E-value=1e+02 Score=33.54 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=62.2
Q ss_pred CCCCCCCcchHHHHHH-----------------HHhCCCCCcc-chHHHHH----------------HHHHHHHHHHHHH
Q 009839 394 GVQNAHGLKEGWAWLA-----------------RFLNALPANI-YTAVALN----------------AFLQLAGFALFKK 439 (524)
Q Consensus 394 ~~~nP~gi~~~W~WLA-----------------RiLN~~P~~~-ita~vL~----------------afLevAG~~L~~~ 439 (524)
+.-.|...+..|++|| ||.|...-.+ +|..++. +..+..|. ++++
T Consensus 258 gfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~nELg~RDyvTgei~kl~~P~ednrallVmnea~~e~~~n-~inF 336 (477)
T KOG2404|consen 258 GFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGNELGTRDYVTGEIQKLKCPIEDNRALLVMNEANYEAFGN-NINF 336 (477)
T ss_pred CccCCCCchhHHHHHHHHHhccCceEEEeccchhhhcccccchhhhHhHHhhcCCcccceeEEEecHhHHHHHhh-hhhh
Confidence 4456788889999998 4555432222 2333332 33444454 6777
Q ss_pred HHHHHHHHHHHH-HHHHhHhhhccCCchhHHHHHHHHHHHHh-cccccCCCcccc-CCCCCCCc
Q 009839 440 YKSQFRKILDNI-YDNFLNALKAREDSKLNLVIAEIQYYIED-KKFLEEPEGRTL-QAPPLSST 500 (524)
Q Consensus 440 YG~QF~KLL~lI-~~d~~p~l~~~~~~~~~~~v~rLe~~Led-~~~l~ePeGr~m-~~~~~s~~ 500 (524)
| -|.|++.-+ ..++...++ -......+.|+.|-.- .+..+.|=||.+ +.++||.+
T Consensus 337 Y--~~K~l~kK~~~~el~s~ln----~t~sel~ttl~eY~~~~~g~~~D~fgrk~f~~s~is~t 394 (477)
T KOG2404|consen 337 Y--MFKKLFKKYESAELASALN----ITESELKTTLEEYSKSFTGKSEDPFGRKVFPVSDISPT 394 (477)
T ss_pred H--hHHHHHHHhhHHHHHHHhC----CCHHHHHHHHHHHHHhhcCCCCCcCCCccccCCCCCcc
Confidence 7 677777544 455555555 2334577888888764 677889999975 55777754
No 46
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.87 E-value=1.2e+02 Score=36.03 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=8.7
Q ss_pred HHHHHHhhchHHHHHHHHHHHHH
Q 009839 93 QIEERKIRSDAAYEEAKRKERAL 115 (524)
Q Consensus 93 q~ee~~~r~~~a~EEa~~~e~a~ 115 (524)
++|+.+..-+...+|+++..+.+
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333443333333
No 47
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=50.27 E-value=1.8e+02 Score=31.31 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHhc
Q 009839 261 DNVRTKASELVKILN 275 (524)
Q Consensus 261 ~qI~~is~eL~~lL~ 275 (524)
.++..++.+|.+.|-
T Consensus 233 ~~LkeKiKELhqrI~ 247 (361)
T KOG3634|consen 233 NDLKEKIKELHQRIC 247 (361)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888887763
No 48
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=48.82 E-value=2.2e+02 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHHHhh
Q 009839 85 QRDHELKSQIEERKIR 100 (524)
Q Consensus 85 q~~~e~~~q~ee~~~r 100 (524)
||+.|-++.|+|++.|
T Consensus 620 ~Re~eer~RirE~rer 635 (940)
T KOG4661|consen 620 RREAEERQRIREERER 635 (940)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 49
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.64 E-value=1.4e+02 Score=35.35 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 009839 93 QIEERKI 99 (524)
Q Consensus 93 q~ee~~~ 99 (524)
+.|+++.
T Consensus 531 ~~e~~~~ 537 (782)
T PRK00409 531 ELEQKAE 537 (782)
T ss_pred HHHHHHH
Confidence 3333333
No 50
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.23 E-value=2e+02 Score=31.76 Aligned_cols=16 Identities=0% Similarity=-0.085 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHHh
Q 009839 465 SKLNLVIAEIQYYIED 480 (524)
Q Consensus 465 ~~~~~~v~rLe~~Led 480 (524)
|-......+|...|..
T Consensus 384 pLs~~q~~~L~~~L~k 399 (445)
T PRK13428 384 ELSDAQRTRLTEVLSR 399 (445)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3344556777777764
No 51
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.96 E-value=3.3e+02 Score=27.45 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=29.5
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHhHHHHHHhHHHHHH-HHHHHhhchHH
Q 009839 58 RREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQ-IEERKIRSDAA 104 (524)
Q Consensus 58 ~~~~~~~~d~~~qr~~~e~~~~~~~~~q~~~e~~~q-~ee~~~r~~~a 104 (524)
+-|+.+ .-.+|--.+--+..---+.|||.||.+-= .-|+.--+|||
T Consensus 61 ~~eLm~-r~~~Y~~~vrslR~~fr~Ev~r~~e~~~g~~ie~~~e~eaa 107 (227)
T KOG4691|consen 61 FFELME-RYQHYRQTVRSLRMEFRSEVQRVHEARAGVLIERKAEKEAA 107 (227)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhhHHH
Confidence 334433 34677777777888888999998887744 13444445544
No 52
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.26 E-value=3.4e+02 Score=32.33 Aligned_cols=6 Identities=0% Similarity=-0.512 Sum_probs=2.3
Q ss_pred eeeccc
Q 009839 334 IYTVPK 339 (524)
Q Consensus 334 P~lVP~ 339 (524)
|++..|
T Consensus 748 ~~V~~f 753 (771)
T TIGR01069 748 PKVKSF 753 (771)
T ss_pred cceeee
Confidence 333333
No 53
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.31 E-value=2.8e+02 Score=31.04 Aligned_cols=59 Identities=34% Similarity=0.517 Sum_probs=42.6
Q ss_pred hhhhhhhhHHHHHhhhHHHHHHHHHHHH--------------HhHHHHHHhHHHHHHHHHHHhhchHHH-HHHHH
Q 009839 51 VEKDRDMRREMDRKNDTVYQRKIAEALD--------------NHLTAVQRDHELKSQIEERKIRSDAAY-EEAKR 110 (524)
Q Consensus 51 ~~k~~~~~~~~~~~~d~~~qr~~~e~~~--------------~~~~~~q~~~e~~~q~ee~~~r~~~a~-EEa~~ 110 (524)
|+--.+-|-+|++|+- -++||+.++-| .++.-|-|.|.+--|.-|.--|-+.++ ||+||
T Consensus 210 ~e~mee~r~di~~kv~-flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rr 283 (502)
T KOG0982|consen 210 VEGMEEERIDIERKVR-FLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERR 283 (502)
T ss_pred hhhhhchhhhHHHHHH-HHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444556778888875 48999999988 345557789998888888777777777 44444
No 54
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=43.90 E-value=4.1e+02 Score=27.96 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=4.7
Q ss_pred HHHHHhhhcc
Q 009839 10 ALVELTHQHQ 19 (524)
Q Consensus 10 ~~~~~~~~~~ 19 (524)
||-||.+-.|
T Consensus 40 Alrel~~S~~ 49 (276)
T PF12037_consen 40 ALRELNSSPH 49 (276)
T ss_pred HHHHHhcChh
Confidence 3445554444
No 55
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=43.25 E-value=72 Score=24.20 Aligned_cols=18 Identities=44% Similarity=0.339 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009839 133 AKLRAEEAKRAALEAEKR 150 (524)
Q Consensus 133 ~~~~~ee~~k~~~ea~~~ 150 (524)
+.+-+|.+++++.||.+.
T Consensus 10 a~k~aEaeKqraAEA~k~ 27 (42)
T PF07046_consen 10 ATKVAEAEKQRAAEATKA 27 (42)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 56
>PF07349 DUF1478: Protein of unknown function (DUF1478); InterPro: IPR009949 This family consists of several hypothetical Sapovirus VP3 proteins of around 165 residues in length. The function of this family is unknown.
Probab=42.71 E-value=23 Score=33.81 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=27.6
Q ss_pred CCCCCCcchHHHHHHHHhCCCCCcc-chHHHHHHHHHHHH
Q 009839 395 VQNAHGLKEGWAWLARFLNALPANI-YTAVALNAFLQLAG 433 (524)
Q Consensus 395 ~~nP~gi~~~W~WLARiLN~~P~~~-ita~vL~afLevAG 433 (524)
..||.|+.++|+||--.+-.+|-+. ..+++|.+|--.-|
T Consensus 35 ~nNpmgp~nAW~WLL~lvqsn~MSl~qy~taL~S~~llLG 74 (162)
T PF07349_consen 35 RNNPMGPHNAWSWLLPLVQSNQMSLMQYATALQSFVLLLG 74 (162)
T ss_pred hcCCCCCchHHHHhcccCCCCcccHHHHHHHHHHHHHHHc
Confidence 4689999999999987777655432 35777777655444
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.43 E-value=5.6e+02 Score=28.54 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=9.4
Q ss_pred HHHHHhhchHHHHHHHHHHHHH
Q 009839 94 IEERKIRSDAAYEEAKRKERAL 115 (524)
Q Consensus 94 ~ee~~~r~~~a~EEa~~~e~a~ 115 (524)
--+++.+.+...+|-++.+..+
T Consensus 194 q~~q~~kl~~~~~E~kk~~~~l 215 (420)
T COG4942 194 QRAQQAKLAQLLEERKKTLAQL 215 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 58
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.21 E-value=4.4e+02 Score=26.62 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=25.8
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhHHhhhhHHHHh
Q 009839 11 LVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQ 50 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~~~~~~ 50 (524)
.+||+..|| -.|+.+-+|-..+..|+++-.++=+.
T Consensus 61 ~~eLm~r~~-----~Y~~~vrslR~~fr~Ev~r~~e~~~g 95 (227)
T KOG4691|consen 61 FFELMERYQ-----HYRQTVRSLRMEFRSEVQRVHEARAG 95 (227)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 456666665 35788888999999999987666554
No 59
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.74 E-value=98 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHh------HHHHHHhHHHH
Q 009839 65 NDTVYQRKIAEALDNH------LTAVQRDHELK 91 (524)
Q Consensus 65 ~d~~~qr~~~e~~~~~------~~~~q~~~e~~ 91 (524)
.-+--||.++-.+.++ ..|++.+||++
T Consensus 66 NPKR~qR~a~ke~~~~g~~TkAQ~ALk~q~E~~ 98 (132)
T PF11208_consen 66 NPKRLQREAKKEMKKKGISTKAQQALKLQREQR 98 (132)
T ss_pred ChhHHHHHHHHhhhccCCChHHHHHHHHHHHHH
Confidence 3445567776666543 35777778766
No 60
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.42 E-value=4.9e+02 Score=26.72 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=10.1
Q ss_pred cHHHHHHHHhhhhcee
Q 009839 320 QVMDILLGEFHRACIY 335 (524)
Q Consensus 320 ef~diLlArl~kkCP~ 335 (524)
|+.++|+-.+-..|||
T Consensus 276 el~Pv~~Kl~~~~~~Y 291 (301)
T PF14362_consen 276 ELLPVLFKLLSGKGPY 291 (301)
T ss_pred HHHHHHHHHhcCCChH
Confidence 4566666666666763
No 61
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=36.36 E-value=94 Score=30.77 Aligned_cols=7 Identities=57% Similarity=0.743 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 009839 104 AYEEAKR 110 (524)
Q Consensus 104 a~EEa~~ 110 (524)
|++.||+
T Consensus 84 a~eaAR~ 90 (190)
T PF06936_consen 84 AMEAARR 90 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344544
No 62
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=35.91 E-value=3.7e+02 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=15.3
Q ss_pred cCccc--CCCcccchhhHHHHHHHHH
Q 009839 358 IGYRE--EDGKIESLENYLSRLKSYM 381 (524)
Q Consensus 358 lGyr~--~dg~~Ese~~Yl~RMsGI~ 381 (524)
+|+.. .+|+++-.-+|..||.-+.
T Consensus 149 GGvil~~~~g~I~~dnT~~~rl~~~~ 174 (188)
T PRK02292 149 GGVVVESEDGRVRVNNTFDSILEDVW 174 (188)
T ss_pred ceEEEEecCCceEEeccHHHHHHHHH
Confidence 67775 4677766667766665443
No 63
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=34.51 E-value=4.4e+02 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=13.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh
Q 009839 59 REMDRKNDTVYQRKIAEALDNH 80 (524)
Q Consensus 59 ~~~~~~~d~~~qr~~~e~~~~~ 80 (524)
++.-|.-...||+-|...+...
T Consensus 49 re~rR~kq~E~q~ai~~QieEk 70 (157)
T PF15236_consen 49 RERRRQKQLEHQRAIKQQIEEK 70 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777776655544
No 64
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=3.2e+02 Score=27.48 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009839 134 KLRAEEAKRAALEAEKRAAKE 154 (524)
Q Consensus 134 ~~~~ee~~k~~~ea~~~~~~~ 154 (524)
++++||++|++.-+++|+..+
T Consensus 46 qrKEeee~KR~eal~RK~E~k 66 (221)
T KOG3223|consen 46 QRKEEEEEKRAEALERKAEAK 66 (221)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 556677777644444444443
No 65
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.96 E-value=7.4e+02 Score=28.04 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=27.1
Q ss_pred ccccccccccccccccccc--------------cccccCchhhHHHHHHHHHHHhcCC
Q 009839 234 LKLSSNEDFSGYEKDISRL--------------IRQIRGLKDNVRTKASELVKILNNP 277 (524)
Q Consensus 234 lks~lkk~~~~~kRqI~~k--------------IGQLtns~~qI~~is~eL~~lL~~~ 277 (524)
+-.|++..+.+++.+|... |.+|.....++..=+..|.+.|.+.
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd 198 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGD 198 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455666666666666543 3334444456677777788888763
No 66
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=7.7e+02 Score=28.03 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhhhcc-------CCchhHHHHHHHHHHHHhcccccCCCcc
Q 009839 428 FLQLAGFALFKKYKSQFRKILDNIYDN----FLNALKAR-------EDSKLNLVIAEIQYYIEDKKFLEEPEGR 490 (524)
Q Consensus 428 fLevAG~~L~~~YG~QF~KLL~lI~~d----~~p~l~~~-------~~~~~~~~v~rLe~~Led~~~l~ePeGr 490 (524)
-...+=+.|+=.-|.|-.+++-++..+ |-..+.+. .-||...-...|..|++....-+.++|-
T Consensus 467 aqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~ 540 (630)
T KOG0742|consen 467 AQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGK 540 (630)
T ss_pred HHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCC
Confidence 334444555556677877776554432 22233332 2267777777788888766656666664
No 67
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=32.44 E-value=3.8e+02 Score=30.11 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=26.9
Q ss_pred HHHhhhhhhhhhHHHHHhhh-----HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhhch
Q 009839 47 ALAQVEKDRDMRREMDRKND-----TVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSD 102 (524)
Q Consensus 47 ~~~~~~k~~~~~~~~~~~~d-----~~~qr~~~e~~~~~~~~~q~~~e~~~q~ee~~~r~~ 102 (524)
.+..|++-+ .-.|+.+.+. .+-.-.-......+....|+.+..++--++|.++.+
T Consensus 260 ~~~iv~~~~-~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~q~~~~~~~er~~r~~~~~ 319 (460)
T KOG1363|consen 260 LVRIVIGSR-SPEELLRYLQGVTGVDEEMTLLLVAFEEEERRLQMRRSEQDEREARLALEQ 319 (460)
T ss_pred hhhhhhcCC-CHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHhhcccchhHHHHHHHHHH
Confidence 455555555 5566655542 122223334455566666655555544444444444
No 68
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=31.96 E-value=2.1e+02 Score=32.07 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 009839 87 DHELKSQI 94 (524)
Q Consensus 87 ~~e~~~q~ 94 (524)
|.|.+.+.
T Consensus 322 d~eyq~sl 329 (460)
T KOG1363|consen 322 DDEYQASL 329 (460)
T ss_pred HHHHHHHH
Confidence 33333333
No 69
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=31.26 E-value=3.4e+02 Score=24.69 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009839 109 KRKERALQEEKIRQEKVKAEAE 130 (524)
Q Consensus 109 ~~~e~a~~e~k~~qek~k~e~e 130 (524)
+.+++++.||++.+-.++.++-
T Consensus 47 K~~ekElKeEKe~er~~r~~~~ 68 (108)
T PF03879_consen 47 KEKEKELKEEKEAERQRRIQRI 68 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666555555553
No 70
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=5.7e+02 Score=27.21 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.7
Q ss_pred HHHHHHHHHhccc
Q 009839 285 LATFSKKVVSRCE 297 (524)
Q Consensus 285 Ln~lAKaIV~QaE 297 (524)
+.-+||-+|..+-
T Consensus 357 ~~~~ak~~id~g~ 369 (379)
T COG5269 357 FDEFAKMFIDRGK 369 (379)
T ss_pred HHHHHHHHHhcCC
Confidence 5556666665544
No 71
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=30.60 E-value=5.7e+02 Score=25.66 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=41.3
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhHHhhhhHHH----HhhhhhhhhhHHHHHhhhHHHHHHHHHH
Q 009839 16 HQHQLGVKEEIRNLISTLETQLISENEQSNSAL----AQVEKDRDMRREMDRKNDTVYQRKIAEA 76 (524)
Q Consensus 16 ~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~~~~----~~~~k~~~~~~~~~~~~d~~~qr~~~e~ 76 (524)
.+|......+++.+-.+|=.++++|..+|---+ .-++||.+.++= .+--..+|-+|+++
T Consensus 32 ~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~--~~~~~~l~~~i~~l 94 (196)
T PF15272_consen 32 DERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKS--SKQSEDLQSRISNL 94 (196)
T ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHH
Confidence 344456677889999999999999999987554 458999999882 22223344555543
No 72
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.55 E-value=3.2e+02 Score=29.23 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 87 DHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKE 154 (524)
Q Consensus 87 ~~e~~~q~ee~~~r~~~a~EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~ 154 (524)
..+++.+|.+.+.|.. +|.+.-++....|++.-+..+.++. ++|++-++..++.+.+...
T Consensus 126 ~~~n~~~I~~n~~~~~---~e~~~~~~~~~~E~~~~~~rr~~~~-----~~e~ee~~~~~~~~~~~ld 185 (309)
T TIGR00570 126 QKENKDVIQKNKEKST---REQEELEEALEFEKEEEEQRRLLLQ-----KEEEEQQMNKRKNKQALLD 185 (309)
T ss_pred HHHhHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.39 E-value=1.2e+03 Score=29.13 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHhHHhhhhHHHHhhhhhhhhhHHHHHhhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 009839 34 ETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKER 113 (524)
Q Consensus 34 ~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~d~~~qr~~~e~~~~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e~ 113 (524)
|.+|..+++.-..++.+..+- ..+++..+ .+++.++.++....-.+-+.-...+..++..+-..+ ....+.++
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~---~~~~e~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~ 674 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEER---QEELEKQL-KQINKKIEELKREITQAEQELKQAEQDLQRLKNERE---QLKQEIEE 674 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccCCCCCCCcccccccccC
Q 009839 114 ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSR 193 (524)
Q Consensus 114 a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (524)
+.++++.+-+++-...+ ..++.-.+.+....++-+.......-|.++.-..
T Consensus 675 ~~~~~~~~~~~~l~~l~--~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~--------------------------- 725 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELE--EELKQLKQELEELLEELKEQLKELRNELKAQWQE--------------------------- 725 (1201)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q ss_pred CCCCCccchhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCchhhHHHHHHHHHHH
Q 009839 194 GSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKI 273 (524)
Q Consensus 194 ~~~~~~~~k~~~~~~~~~~a~~~~~~R~~~Lkel~~~~~~lks~lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~l 273 (524)
.....-..+..+.+.+...+...+..+..++.+.+..+..---+..-|..+-++|..+
T Consensus 726 ----------------------~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L 783 (1201)
T PF12128_consen 726 ----------------------LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQL 783 (1201)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
No 74
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=28.94 E-value=58 Score=29.50 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHHHhH
Q 009839 74 AEALDNHLTAVQRDH 88 (524)
Q Consensus 74 ~e~~~~~~~~~q~~~ 88 (524)
...||+--+.++...
T Consensus 58 h~ILDd~~~~l~~sk 72 (105)
T PF11214_consen 58 HSILDDTESKLNDSK 72 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666665543
No 75
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.33 E-value=7.8e+02 Score=26.56 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHH-HHHHHHHHHhhchHHHHHHHH
Q 009839 67 TVYQRKIAEALDNHLTAVQRDHE-LKSQIEERKIRSDAAYEEAKR 110 (524)
Q Consensus 67 ~~~qr~~~e~~~~~~~~~q~~~e-~~~q~ee~~~r~~~a~EEa~~ 110 (524)
.++|-....-..+|+..+||..| .|.-+..|-.-+||-+-|+.+
T Consensus 318 ~s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ek 362 (406)
T KOG3859|consen 318 FSLQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEK 362 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888889999999999876 776677777778876666643
No 76
>PLN02316 synthase/transferase
Probab=27.29 E-value=1.6e+02 Score=36.32 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 009839 69 YQRKIAEALDNH 80 (524)
Q Consensus 69 ~qr~~~e~~~~~ 80 (524)
.+|.|.++-+++
T Consensus 125 ~~~~~~~~~~~~ 136 (1036)
T PLN02316 125 RKREIEELAEEN 136 (1036)
T ss_pred HHHHHHHHHhhc
Confidence 344444444443
No 77
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=27.06 E-value=3.7e+02 Score=22.37 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhh-----------------HHHH--HhhhHHHHHHHHHHHHHhHHHH
Q 009839 24 EEIRNLISTLETQLISENEQSNSALAQVEKDRDMR-----------------REMD--RKNDTVYQRKIAEALDNHLTAV 84 (524)
Q Consensus 24 ~~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~-----------------~~~~--~~~d~~~qr~~~e~~~~~~~~~ 84 (524)
+++|++|..++.+|+.=+.+=.....+|=+++... .++. .-+|..+-+.|=..+..+...+
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~~g~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~i~~~s~~~ 81 (83)
T TIGR01791 2 EELRQEIEEIDKSILDLIEKRIKIARKIGEIKHNNGLPITDEEREERVIERLRNTARNLGLDVLKLKEIFEILMSLSKEE 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999988766655555555554444321 1111 2267778888878778877777
Q ss_pred HH
Q 009839 85 QR 86 (524)
Q Consensus 85 q~ 86 (524)
|+
T Consensus 82 Q~ 83 (83)
T TIGR01791 82 QR 83 (83)
T ss_pred hC
Confidence 75
No 78
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=27.00 E-value=2.6e+02 Score=21.31 Aligned_cols=9 Identities=56% Similarity=0.538 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 009839 145 LEAEKRAAK 153 (524)
Q Consensus 145 ~ea~~~~~~ 153 (524)
.|++++.++
T Consensus 28 aEaeKqraa 36 (42)
T PF07046_consen 28 AEAEKQRAA 36 (42)
T ss_pred HHHHHHHHH
Confidence 344444444
No 79
>PTZ00491 major vault protein; Provisional
Probab=26.98 E-value=8.6e+02 Score=29.53 Aligned_cols=104 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHH----------HHHHHhHHHHHHhHHHHHHHHHHHhhchHHHHHHHHHH--------------HHH
Q 009839 60 EMDRKNDTVYQRKIA----------EALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKE--------------RAL 115 (524)
Q Consensus 60 ~~~~~~d~~~qr~~~----------e~~~~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e--------------~a~ 115 (524)
.+|.|.-..+|.-+. |+--.|..+. ++.|.|-+.|-+||-+++.-|++|++= +|.
T Consensus 640 pvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~-~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~ 718 (850)
T PTZ00491 640 PVDERTRDSLQKSVQLAIEITTKSQEAAARHQAEL-LEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSR 718 (850)
T ss_pred ecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH-HHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHH
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhh
Q 009839 116 QEEKIRQEKVKAEAE---MQAKLRAEEAK---RAALEAEKRAAKEAAEREAAENS 164 (524)
Q Consensus 116 ~e~k~~qek~k~e~e---~~~~~~~ee~~---k~~~ea~~~~~~~~~e~e~~~~~ 164 (524)
-|.+-+-|.++.|+| .+|+.+++..+ -+.+|..++..+-.-+-+++.|.
T Consensus 719 a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~~~~~~~~~e~~~~~~~~~ 773 (850)
T PTZ00491 719 AEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQNE 773 (850)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
No 80
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.47 E-value=6.4e+02 Score=24.97 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhchHHHHHHHH
Q 009839 90 LKSQIEERKIRSDAAYEEAKR 110 (524)
Q Consensus 90 ~~~q~ee~~~r~~~a~EEa~~ 110 (524)
.+.+.++....-+..+.+||.
T Consensus 99 ~k~eAe~~~~~ye~~L~~Ar~ 119 (204)
T PRK09174 99 LKQEADAAVAAYEQELAQARA 119 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555544
No 81
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=26.14 E-value=1.2e+03 Score=27.93 Aligned_cols=239 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhhHHHHHhhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhhchH
Q 009839 24 EEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA 103 (524)
Q Consensus 24 ~~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~d~~~qr~~~e~~~~~~~~~q~~~e~~~q~ee~~~r~~~ 103 (524)
++++..++.+...+..--++-.+.-.++........++.++++ ..+..++++-...-..-...-++..++++-....+.
T Consensus 799 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (1179)
T TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE-DLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccCCCCCCC
Q 009839 104 AYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDD 183 (524)
Q Consensus 104 a~EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 183 (524)
..++....+....+.+.+......+.+........-..+-..-..+....+..-..-..................
T Consensus 878 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~----- 952 (1179)
T TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT----- 952 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Q ss_pred cccccccccCCC----CCCccchhhhhHHhhhHHHHHHH-------HHHHHHHHHHHHhhhccccccccccccccccccc
Q 009839 184 SSVIAGAQSRGS----RSDGTKKLQSAVRATESALNIEQ-------KRLQKLKELDEENQSLKLSSNEDFSGYEKDISRL 252 (524)
Q Consensus 184 ~~~~~~~~~~~~----~~~~~~k~~~~~~~~~~a~~~~~-------~R~~~Lkel~~~~~~lks~lkk~~~~~kRqI~~k 252 (524)
..+..+ -...++.+...+...-.|++.|. +|+..|..-...+..-+..|...+.++.+.+...
T Consensus 953 ------~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~ 1026 (1179)
T TIGR02168 953 ------LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026 (1179)
T ss_pred ------HHHHHhhccccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccCchhhHHHHHHHHHHHh
Q 009839 253 IRQIRGLKDNVRTKASELVKIL 274 (524)
Q Consensus 253 IGQLtns~~qI~~is~eL~~lL 274 (524)
|.....+-..|+..++.+..-|
T Consensus 1027 f~~~~~~F~~v~~~f~~~F~~l 1048 (1179)
T TIGR02168 1027 DREARERFKDTFDQVNENFQRV 1048 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 82
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.78 E-value=6.6e+02 Score=24.83 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHhhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 85 QRDHELKSQIEERKIRSDAAY----EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREA 160 (524)
Q Consensus 85 q~~~e~~~q~ee~~~r~~~a~----EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~e~ 160 (524)
+|.......+++-...++.|. +=.++.+.|..|.++--..++.+++..+....+++++. .+.....+...-+.|+
T Consensus 79 ~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~e-ae~ii~~A~~~Ie~Ek 157 (205)
T PRK06231 79 KRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQ-ANLIIFQARQEIEKER 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhcc
Q 009839 161 AENSKRITAG 170 (524)
Q Consensus 161 ~~~~~~~~~~ 170 (524)
+.......+.
T Consensus 158 ~~a~~~Lk~e 167 (205)
T PRK06231 158 RELKEQLQKE 167 (205)
T ss_pred HHHHHHHHHH
No 83
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=25.14 E-value=3.7e+02 Score=23.50 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 407 WLARFLNALPANIY-TAVALNAFLQLAGFALFKKYKSQFRKILDNIYD 453 (524)
Q Consensus 407 WLARiLN~~P~~~i-ta~vL~afLevAG~~L~~~YG~QF~KLL~lI~~ 453 (524)
|+-.+.+.+|...+ ..+|+.+.+..++......|+..|.+++.-+..
T Consensus 37 i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~ 84 (121)
T smart00582 37 WEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALR 84 (121)
T ss_pred HHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 34455565444333 577888999888765333444444444443333
No 84
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.00 E-value=4.7e+02 Score=29.48 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHhCC-CCC-ccchHHHHHHHHHHHHHHHH
Q 009839 399 HGLKEGWAWLARFLNA-LPA-NIYTAVALNAFLQLAGFALF 437 (524)
Q Consensus 399 ~gi~~~W~WLARiLN~-~P~-~~ita~vL~afLevAG~~L~ 437 (524)
.+...+=+.|.+-+|. .|. ..++.+||.+..+-||+.|+
T Consensus 34 ~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 34 GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444666666666664 332 34578899999999999998
No 85
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=24.81 E-value=1.8e+03 Score=29.59 Aligned_cols=224 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred CccccchhhHHHHHhhhccc--chhHHHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 009839 1 MDEVGLADGALVELTHQHQL--GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALD 78 (524)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~d~~~qr~~~e~~~ 78 (524)
|++.+...+.|-|.+..-.- +.+..+..++..+=..+..|+.+..+.-..+-+.......+-..+|.. |--++++.-
T Consensus 1272 ~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee-~e~~~~l~r 1350 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEE-QEAKNELER 1350 (1930)
T ss_pred hhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_pred HhHHHHHHhHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 009839 79 NHLTAVQRDHELKSQIEERKIRSDAAYEEAKRK-ERALQEEKIRQEKVKAEAEMQAKLRAE-----EAKRAALEAEKRAA 152 (524)
Q Consensus 79 ~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~-e~a~~e~k~~qek~k~e~e~~~~~~~e-----e~~k~~~ea~~~~~ 152 (524)
+|..+.-.+-+-|.++++..+..-+-+||++++ .+-+++..++-+-+.+.....-+.+.. +-..-..+.....+
T Consensus 1351 ~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~ 1430 (1930)
T KOG0161|consen 1351 KLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAV 1430 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhccccccccCCCCCCCcccccccccCCCCCCccchhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 009839 153 KEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQ 232 (524)
Q Consensus 153 ~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~a~~~~~~R~~~Lkel~~~~~ 232 (524)
+.-.+- .+...+.+..++..+..|......-+
T Consensus 1431 ~~le~k------------------------------------------------~k~f~k~l~e~k~~~e~l~~Eld~aq 1462 (1930)
T KOG0161|consen 1431 AALEKK------------------------------------------------QKRFEKLLAEWKKKLEKLQAELDAAQ 1462 (1930)
T ss_pred HHHHHH------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccccccccccccccccccccccccCchhhHHHHHHHHHHH
Q 009839 233 SLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKI 273 (524)
Q Consensus 233 ~lks~lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~l 273 (524)
.--.++...+-.+++.+...+.|+-..........++|.++
T Consensus 1463 ~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1463 RELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=24.75 E-value=7.7e+02 Score=25.31 Aligned_cols=101 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHH----hHHHHHHhHHHHHHHHHHHhhchHHH----------HHHHHHHHHHHHHHHHHHHHHHH-
Q 009839 64 KNDTVYQRKIAEALDN----HLTAVQRDHELKSQIEERKIRSDAAY----------EEAKRKERALQEEKIRQEKVKAE- 128 (524)
Q Consensus 64 ~~d~~~qr~~~e~~~~----~~~~~q~~~e~~~q~ee~~~r~~~a~----------EEa~~~e~a~~e~k~~qek~k~e- 128 (524)
..+.=|-+|-.+..++ .+ .+.+..|...+.+++..|+.-|. .+..++.+.....+....++..+
T Consensus 88 aye~Wl~~K~~q~~~klqqk~l-~~~~~~E~~k~~~e~e~Rk~lA~~~y~eWl~~K~~q~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T PF13904_consen 88 AYEEWLSAKEKQEQEKLQQKQL-ELKQKEEREKQEEEKEERKRLAEEKYQEWLQRKEEQERKQREQKHSKEEEKKASKSL 166 (264)
T ss_pred hHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q ss_pred -------------HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009839 129 -------------AEMQA---------KLRAEEAKRAALEAEKRAAKEAAEREAAENSKRI 167 (524)
Q Consensus 129 -------------~e~~~---------~~~~ee~~k~~~ea~~~~~~~~~e~e~~~~~~~~ 167 (524)
++ + ++..++.+++..+..+....++++.++++-+..|
T Consensus 167 ~~~~~~~~~~~~~e~--a~~~~q~W~~kK~~e~~~~r~~~~~~~~~~~~e~~eRk~~ae~A 225 (264)
T PF13904_consen 167 SSQAAKPEREVSQEE--AKQRYQEWERKKKEEQQQKREEEREKEQQKQQEEQERKEQAEEA 225 (264)
T ss_pred cccccccccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 87
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=24.24 E-value=1.1e+02 Score=30.82 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred HHHHHHHh-hhhceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCC--CCCCC
Q 009839 322 MDILLGEF-HRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIP--GVQNA 398 (524)
Q Consensus 322 ~diLlArl-~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~~Ese~~Yl~RMsGI~rLYAAI~qt~~~--~~~nP 398 (524)
.|+++.|| +++-|----.|. .-..-++|.+.+..-..-......+.=..|+.|++.-+-.|.+..-. +.++|
T Consensus 36 tdLI~~Ry~~~~~pt~~~ky~-----~l~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP 110 (203)
T PF11207_consen 36 TDLIWHRYELKKNPTDKNKYQ-----LLEALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDP 110 (203)
T ss_pred HHHHHHHHHHhcCCchHHHHH-----HHHHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 89999999 444222111110 01123666666554432222333445568999999999999886533 44556
Q ss_pred CCcchHHHH--------HHHHhCCCCCccc-hHHHHH
Q 009839 399 HGLKEGWAW--------LARFLNALPANIY-TAVALN 426 (524)
Q Consensus 399 ~gi~~~W~W--------LARiLN~~P~~~i-ta~vL~ 426 (524)
|- .+|.| +.+||...-.+.+ ++.+..
T Consensus 111 ~l--lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~ 145 (203)
T PF11207_consen 111 YL--LYYHWSRFGDQEALRRFLQLEGTPELETAELQY 145 (203)
T ss_pred cH--HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHH
Confidence 55 47777 4467766433322 455543
No 88
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=24.03 E-value=2.8e+02 Score=23.70 Aligned_cols=11 Identities=45% Similarity=0.398 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q 009839 120 IRQEKVKAEAE 130 (524)
Q Consensus 120 ~~qek~k~e~e 130 (524)
..+||+.+.||
T Consensus 45 ~a~eKav~da~ 55 (81)
T KOG4326|consen 45 DAHEKAVADAE 55 (81)
T ss_pred HHHHHHHHhHH
Confidence 34667776665
No 89
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=23.97 E-value=7e+02 Score=24.52 Aligned_cols=6 Identities=17% Similarity=0.811 Sum_probs=2.4
Q ss_pred HHHHHH
Q 009839 222 QKLKEL 227 (524)
Q Consensus 222 ~~Lkel 227 (524)
+-|.++
T Consensus 146 KRiEEI 151 (171)
T PF05672_consen 146 KRIEEI 151 (171)
T ss_pred HHHHHH
Confidence 344443
No 90
>PRK00106 hypothetical protein; Provisional
Probab=23.68 E-value=1.1e+03 Score=26.92 Aligned_cols=9 Identities=11% Similarity=0.087 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 009839 468 NLVIAEIQY 476 (524)
Q Consensus 468 ~~~v~rLe~ 476 (524)
..++.||+.
T Consensus 454 ~~~i~rl~~ 462 (535)
T PRK00106 454 ENYIKRLRD 462 (535)
T ss_pred HHHHHHHHH
Confidence 334444443
No 91
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=22.94 E-value=4.2e+02 Score=27.98 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 99 IRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAK 153 (524)
Q Consensus 99 ~r~~~a~EEa~~~e~a~~e~k~~qek~k~e~e~~~~~~~ee~~k~~~ea~~~~~~ 153 (524)
.+.-.++|+.|..|.+.-..-+.+++.+.+.-....+...+..+...+..+|-++
T Consensus 159 r~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~Ki~A 213 (291)
T PF06098_consen 159 RRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELREKIAA 213 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 92
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.57 E-value=8.7e+02 Score=24.72 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=14.4
Q ss_pred HHHHH-HHHHHHHHHhhhcccccc
Q 009839 217 EQKRL-QKLKELDEENQSLKLSSN 239 (524)
Q Consensus 217 ~~~R~-~~Lkel~~~~~~lks~lk 239 (524)
-+.|+ +.|+.|...+..++..-+
T Consensus 183 Knk~lq~QL~~L~~EL~~~kde~k 206 (246)
T PF00769_consen 183 KNKRLQEQLKELKSELEQLKDEEK 206 (246)
T ss_dssp H-HHHHHHHHHHHHHHHTTB-CCG
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhc
Confidence 34454 678888888888775433
No 93
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=21.33 E-value=1.5e+02 Score=34.52 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=5.7
Q ss_pred CCCCCcccccc
Q 009839 179 RQPDDSSVIAG 189 (524)
Q Consensus 179 ~~~~~~~~~~~ 189 (524)
+.+..|+.|+.
T Consensus 614 t~d~~G~~~sk 624 (651)
T PTZ00399 614 THDADGEEISK 624 (651)
T ss_pred CCCCCCCCCCH
Confidence 45555555543
No 94
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=21.21 E-value=6.6e+02 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHhhchHHH
Q 009839 73 IAEALDNHLTAVQRDHELKSQIEERKIRSDAAY 105 (524)
Q Consensus 73 ~~e~~~~~~~~~q~~~e~~~q~ee~~~r~~~a~ 105 (524)
|=-.|-.||+.++++-+-.+....||.--|+.+
T Consensus 12 mFG~LlGTL~kf~~e~~k~~~~~~rR~eie~rl 44 (131)
T PF04696_consen 12 MFGGLLGTLQKFKKEEEKKTEQQKRRAEIEKRL 44 (131)
T ss_pred HHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHH
Confidence 334566899999997655555555554444333
No 95
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=20.93 E-value=8.9e+02 Score=26.94 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 009839 113 RALQEEKIRQEKVK 126 (524)
Q Consensus 113 ~a~~e~k~~qek~k 126 (524)
||.||+..++=||.
T Consensus 112 raa~eee~k~wka~ 125 (510)
T PF04747_consen 112 RAAQEEEHKKWKAE 125 (510)
T ss_pred hhhhhHHHHHHHHH
Confidence 45555554444433
No 96
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=20.44 E-value=2.6e+02 Score=23.73 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=36.9
Q ss_pred HHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009839 406 AWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNF 455 (524)
Q Consensus 406 ~WLARiLN~~P~~~ita~vL~afLevAG~~L~~~YG~QF~KLL~lI~~d~ 455 (524)
+||||.++..|.+.+..+=+..|++.+...|...-...+.+.+..+-..+
T Consensus 2 r~~~~~~~~~~~~~~~~~~vd~~~d~~~~~l~~~~~~~~~~~l~~le~~L 51 (96)
T cd03200 2 RFLYRLLGPAPNAPNAATNIDSWVDTAIFQLAEGSSKEKAAVLRALNSAL 51 (96)
T ss_pred chHHHHhcccCCCchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 68999988777777778888889998776666555567777777765544
Done!