Query 009839
Match_columns 524
No_of_seqs 150 out of 199
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:09:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 1.6E-66 5.6E-71 526.9 22.1 264 197-481 5-284 (297)
2 3rk6_A Polyadenylate-binding p 86.9 6.4 0.00022 38.1 12.2 167 244-440 18-195 (234)
3 1hu3_A EIF4GII; heat repeat, t 82.1 5.4 0.00018 38.9 9.3 175 241-438 7-199 (260)
4 2vso_E Eukaryotic initiation f 80.9 10 0.00035 37.4 11.0 174 241-440 32-232 (284)
5 3oja_B Anopheles plasmodium-re 72.5 81 0.0028 33.3 15.8 6 48-53 479-484 (597)
6 3vkg_A Dynein heavy chain, cyt 69.1 47 0.0016 43.5 14.9 37 72-108 1921-1957(3245)
7 2zuo_A MVP, major vault protei 38.6 4.9E+02 0.017 29.9 14.9 100 61-161 646-758 (861)
8 1deq_A Fibrinogen (alpha chain 31.2 1.1E+02 0.0036 32.1 7.5 65 13-78 116-189 (390)
9 2b5u_A Colicin E3; high resolu 30.6 3.5E+02 0.012 29.4 11.4 18 87-104 293-310 (551)
10 1ik9_A DNA repair protein XRCC 27.0 4.2E+02 0.014 25.2 11.5 51 25-75 136-186 (213)
11 3ghg_A Fibrinogen alpha chain; 25.2 85 0.0029 34.2 5.7 65 16-81 116-193 (562)
12 2d1l_A Metastasis suppressor p 24.3 5.1E+02 0.017 25.3 11.0 31 16-46 86-116 (253)
13 3bc1_B Synaptotagmin-like prot 22.4 54 0.0018 25.6 2.6 23 79-102 10-32 (59)
14 2j1d_G DAAM1, disheveled-assoc 21.8 99 0.0034 32.7 5.5 17 135-151 401-417 (483)
15 3v6i_B V-type ATP synthase, su 21.1 4E+02 0.014 23.0 11.0 12 87-98 15-26 (105)
16 1f5n_A Interferon-induced guan 20.5 8.5E+02 0.029 26.5 13.5 19 93-111 488-506 (592)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=100.00 E-value=1.6e-66 Score=526.93 Aligned_cols=264 Identities=17% Similarity=0.276 Sum_probs=231.8
Q ss_pred CCccchhhhhHHhhhHHHHHHHHHHHHHHHHHH-HhhhccccccccccccccccccccccccCchhhHHHHHHHHHHHhc
Q 009839 197 SDGTKKLQSAVRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN 275 (524)
Q Consensus 197 ~~~~~k~~~~~~~~~~a~~~~~~R~~~Lkel~~-~~~~lks~lkk~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~ 275 (524)
|+.|+|+|++ |+++++.||.--. ..+..++++|+.++++||+||++|||||+|.+||++|+++|.++|+
T Consensus 5 ~~~~~~~~~~----------y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~ 74 (297)
T 3pev_B 5 FDKISKMFWH----------YKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLIN 74 (297)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHh
Confidence 7888988888 8777777775332 2222456899999999999999999999999999999999999998
Q ss_pred CC---CChHHHHHHHHHHHHHhcccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhhceeeccccccccccccc
Q 009839 276 NP---LCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFE 349 (524)
Q Consensus 276 ~~---~~p~~~~Ln~lAKaIV~QaEt~---~~~sAfPlA~V~v~L~~~~Pef~diLlArl~kkCP~lVP~~~~~~~~~~~ 349 (524)
+. ++|+.|+||+|||+||+|||++ ++++|||+|.|++.||+.||+|+|+||||||++|||+||||++ .+
T Consensus 75 ~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~ 149 (297)
T 3pev_B 75 DTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----ID 149 (297)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CS
T ss_pred CccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----cc
Confidence 75 4668899999999999999995 5789999999999999999999999999999999999999964 24
Q ss_pred cHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCCccc---
Q 009839 350 SEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIY--- 420 (524)
Q Consensus 350 TeEey~k~lGyr~-~dg~~Ese~~Yl~RMsGI~rLYAAI~qt~~~-----~~~nP~gi~~~W~WLARiLN~~P~~~i--- 420 (524)
| ++|++.|||+. +||+||++++|++||+||++|||||+++++| +.+||||++++|+|||||||++|. .+
T Consensus 150 t-eegr~~mG~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t 227 (297)
T 3pev_B 150 T-EKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNT 227 (297)
T ss_dssp S-HHHHHHTTCCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHH
T ss_pred c-HHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhccc
Confidence 4 67888999976 6899999999999999999999999999865 457999999999999999999554 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhc
Q 009839 421 TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDK 481 (524)
Q Consensus 421 ta~vL~afLevAG~~L~~~YG~QF~KLL~lI~~d~~p~l~~~~~~~~~~~v~rLe~~Led~ 481 (524)
|++||++||++||++|+++||+||.|||++|.++|+|+++++..+ .++||+.+++++
T Consensus 228 ~~~vL~~~Le~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~----~a~RL~~l~e~~ 284 (297)
T 3pev_B 228 HFVILGSWWDAAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYV----GAARLRILLEAW 284 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc----cHHHHHHHHHHH
Confidence 455999999999999999999999999999999999999987643 467888888874
No 2
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=86.94 E-value=6.4 Score=38.13 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=103.5
Q ss_pred ccccccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHHhhC---cc
Q 009839 244 GYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---PQ 320 (524)
Q Consensus 244 ~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~~~~~p~~~~Ln~lAKaIV~QaEt~~~~sAfPlA~V~v~L~~~~---Pe 320 (524)
.+.|+|+-.+|.||.+.+....++.+|..+++.. ....-.|..+++-|+.++-.+ |..+..+|.++..|.... |+
T Consensus 18 ~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~-~~~~~~L~~vi~lIfekAi~e-p~fs~~YA~LC~~l~~~l~~~~~ 95 (234)
T 3rk6_A 18 TLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQELVELIYQQATSI-PNFSYMGARLCNYLSHHLTISPQ 95 (234)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSS-TTCHHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCCCCc
Confidence 5678888889999977778888888888886531 111234777888888877653 347888888988876543 43
Q ss_pred ---HHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhc-CCCCC-
Q 009839 321 ---VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQT-EIPGV- 395 (524)
Q Consensus 321 ---f~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~~Ese~~Yl~RMsGI~rLYAAI~qt-~~~~~- 395 (524)
|..+|+.+.+.. |-- . ... ... +...-.|+-|.+++-+-+... ..++.
T Consensus 96 ~~~Fr~lLL~rcQ~e------Fe~----~-----~~~------~~~------d~~~k~r~lg~i~FIgELf~~l~~~~~~ 148 (234)
T 3rk6_A 96 SGNFRQLLLQRCRTE------YEV----K-----DQA------AKG------DEVTRKRFHAFVLFLGELYLNLEIKGTN 148 (234)
T ss_dssp TCCHHHHHHHHHHHH------HTT----H-----HHH------TSS------CHHHHHHHHHHHHHHHHHHHHCCEECTT
T ss_pred hhHHHHHHHHHHHHH------HHh----h-----HHh------hhc------cHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 788888777664 110 0 000 011 124557999999999998863 22211
Q ss_pred CCCCCcchHHHHHHHHhCC---CCCccchHHHHHHHHHHHHHHHHHHH
Q 009839 396 QNAHGLKEGWAWLARFLNA---LPANIYTAVALNAFLQLAGFALFKKY 440 (524)
Q Consensus 396 ~nP~gi~~~W~WLARiLN~---~P~~~ita~vL~afLevAG~~L~~~Y 440 (524)
..+....-.=..+-.+|+. .| .+-...++..+|..+|..|-..+
T Consensus 149 ~~~l~e~I~~~ci~~Ll~~l~~~p-~ee~vE~l~~lL~tvG~~Ld~~~ 195 (234)
T 3rk6_A 149 GQVTRADILQVGLRELLNALFSNP-MDDNLICAVKLLKLTGSVLEDAW 195 (234)
T ss_dssp SSEECCHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHhhcc
Confidence 1122221122233444432 24 44566777789999999887654
No 3
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=82.06 E-value=5.4 Score=38.94 Aligned_cols=175 Identities=10% Similarity=0.102 Sum_probs=95.0
Q ss_pred cccccccccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHHh-hCc
Q 009839 241 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS-QVP 319 (524)
Q Consensus 241 ~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~~~~~p~~~~Ln~lAKaIV~QaEt~~~~sAfPlA~V~v~L~~-~~P 319 (524)
.+..++|+|+-.+|.||. +.+..|+.+|..+-.. .+ -.+.-++..|+..+-.+ |..+.-+|.++..|.. ..|
T Consensus 7 ~~~~l~r~v~giLNKLT~--~nf~~i~~ql~~~~i~--~~--~~l~~vi~~if~kA~~e-p~f~~~YA~Lc~~L~~~~~p 79 (260)
T 1hu3_A 7 KTQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVP 79 (260)
T ss_dssp HHHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhcCC--CH--HHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhCC
Confidence 456788999999999985 4566777666554211 22 23455566666655443 3355667778777765 355
Q ss_pred c---------HHHHHHHHhhhhceeecccccc--c--ccccc---ccHHHHHHHcCcccCCCcc-cchhhHHHHHHHHHH
Q 009839 320 Q---------VMDILLGEFHRACIYTVPKHIV--F--SEAAF---ESEEAYYKTIGYREEDGKI-ESLENYLSRLKSYMR 382 (524)
Q Consensus 320 e---------f~diLlArl~kkCP~lVP~~~~--~--~~~~~---~TeEey~k~lGyr~~dg~~-Ese~~Yl~RMsGI~r 382 (524)
. |+.+|+-+++...- -++... . ..... .+.++ .+.+. ..+ +.....-.|+-|.++
T Consensus 80 ~~~~~~~~~~Fr~~LL~rcq~eFe--~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~-----~e~ee~~~~~k~r~lg~i~ 151 (260)
T 1hu3_A 80 MADKPGNTVNFRKLLLNRCQKEFE--KDKADDDVFEKKQKELEAASAPEE-RTRLH-----DELEEAKDKARRRSIGNIK 151 (260)
T ss_dssp ---------CHHHHHHHHHHHHHH--HHTC------------------------------------CCSSHHHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHh--cccchhhhHHHHhhhhcccCCHHH-HHHhh-----hHHHHHHHHHHHHHHhHHH
Confidence 4 55666655443211 011000 0 00000 00000 00000 000 111244578999999
Q ss_pred HHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 009839 383 LYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFK 438 (524)
Q Consensus 383 LYAAI~qt~~~~~~nP~gi~~~W~WLARiLN~~P~~~ita~vL~afLevAG~~L~~ 438 (524)
+-+-+.-.. -.+..-....+-.+|.. | ++-..-+|..+|..+|..|-.
T Consensus 152 FIgeLy~~~------~l~~~i~~~~l~~Ll~~-~-~e~~iE~l~~lL~tvG~~L~~ 199 (260)
T 1hu3_A 152 FIGELFKLK------MLTEAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF 199 (260)
T ss_dssp HHHHHHTTT------CSCHHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcC------CCCHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHHhC
Confidence 999988643 22333456677777875 4 445677888999999999875
No 4
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=80.88 E-value=10 Score=37.38 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=95.3
Q ss_pred cccccccccccccccccCchhhHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHHhhCc
Q 009839 241 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP-LCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP 319 (524)
Q Consensus 241 ~~~~~kRqI~~kIGQLtns~~qI~~is~eL~~lL~~~-~~p~~~~Ln~lAKaIV~QaEt~~~~sAfPlA~V~v~L~~~~P 319 (524)
.+..++|+|+-.+|.||. +.+..|+.+|..+-... ..+..-.+.-+++-|+.++-.+ |..+--+|.++..|....|
T Consensus 32 ~~e~l~r~vkgiLNKLT~--~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~e-p~fs~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 32 DKDEVERKMKSLLNKLTL--EMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDE-PHWSSMYAQLCGKVVKELN 108 (284)
T ss_dssp CHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 466789999999999974 45777888887774321 0011112344455555555432 3366677888887776543
Q ss_pred -c--------------HHHHHHHHhhhhceeeccccccccccccccHHHHHHHcCcccCCCccc----ch-----hhHHH
Q 009839 320 -Q--------------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIE----SL-----ENYLS 375 (524)
Q Consensus 320 -e--------------f~diLlArl~kkCP~lVP~~~~~~~~~~~TeEey~k~lGyr~~dg~~E----se-----~~Yl~ 375 (524)
+ |..+|+.+++.. +-.... .+- .+.+ ++...| ++ ...-.
T Consensus 109 ~~i~~e~~~~k~g~~~Fr~~LL~rcq~e----Fe~~~~-~~~--~~~~----------~~~~~e~e~~~~e~~~~~~~k~ 171 (284)
T 2vso_E 109 PDITDETNEGKTGPKLVLHYLVARCHAE----FDKGWT-DKL--PTNE----------DGTPLEPEMMSEEYYAAASAKR 171 (284)
T ss_dssp TTCCBCC---CCTHHHHHHHHHHHHHHH----HHHCCC-SSC--C----------------------CCTTHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHH----Hhhhhh-hhh--hhcc----------ccchhhhhhhhhHHHHHHHHHH
Confidence 2 334444443322 111000 000 0000 000111 11 23346
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCC--CCccchHHHHHHHHHHHHHHHHHHH
Q 009839 376 RLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNAL--PANIYTAVALNAFLQLAGFALFKKY 440 (524)
Q Consensus 376 RMsGI~rLYAAI~qt~~~~~~nP~gi~~~W~WLARiLN~~--P~~~ita~vL~afLevAG~~L~~~Y 440 (524)
|+-|.+++-+-+.-... .+..-....+-.+|+.. .+.+-..-+|..+|.++|..|-..-
T Consensus 172 r~lg~i~FIgeLyk~~~------l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~ 232 (284)
T 2vso_E 172 RGLGLVRFIGFLYRLNL------LTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDS 232 (284)
T ss_dssp HHHHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHhhHHHHHHHHHhccC------CcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999986432 22334566677777520 1345567888889999999886543
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.45 E-value=81 Score=33.32 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.1
Q ss_pred HHhhhh
Q 009839 48 LAQVEK 53 (524)
Q Consensus 48 ~~~~~k 53 (524)
+...++
T Consensus 479 l~~~~~ 484 (597)
T 3oja_B 479 LQGLHA 484 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.09 E-value=47 Score=43.54 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHhhchHHHHHH
Q 009839 72 KIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEA 108 (524)
Q Consensus 72 ~~~e~~~~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa 108 (524)
++..=|++=..+....-+++.+.++.+..=+.+-+||
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555544444444333333333
No 7
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=38.58 E-value=4.9e+02 Score=29.94 Aligned_cols=100 Identities=29% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHH----------HHHHHhHHHHHHhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 009839 61 MDRKNDTVYQRKIA----------EALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEK---VKA 127 (524)
Q Consensus 61 ~~~~~d~~~qr~~~----------e~~~~~~~~~q~~~e~~~q~ee~~~r~~~a~EEa~~~e~a~~e~k~~qek---~k~ 127 (524)
+|-+.-..+|+-+. |+--.| -|.-+..|.|-.+|-+||.++|+-|++|+.=-.+|-+-..=|. ||+
T Consensus 646 vDqrtrd~LqkSVqlAiEItT~sqEa~Ar~-~A~~~eQea~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves~g~a~A 724 (861)
T 2zuo_A 646 VDQRTRDALQRSVQLAIEITTNSQEAAAKH-EAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHh-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009839 128 EAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAA 161 (524)
Q Consensus 128 e~e~~~~~~~ee~~k~~~ea~~~~~~~~~e~e~~ 161 (524)
||+-.|....=|..-+-..|.-++.+.+-+.+..
T Consensus 725 eA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~~ae 758 (861)
T 2zuo_A 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhHHHhhhhHHH
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.18 E-value=1.1e+02 Score=32.14 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhh---------HHHHHhhhHHHHHHHHHHHH
Q 009839 13 ELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMR---------REMDRKNDTVYQRKIAEALD 78 (524)
Q Consensus 13 ~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~---------~~~~~~~d~~~qr~~~e~~~ 78 (524)
+=.+.|+.-+|+-|+++|- .-..|++=|+.-.+.|-|||...+.. +.+++++|.-++-++.+.|+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 3345678888888888888 56778888888899999999988653 46888999888888877644
No 9
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.55 E-value=3.5e+02 Score=29.40 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhhchHH
Q 009839 87 DHELKSQIEERKIRSDAA 104 (524)
Q Consensus 87 ~~e~~~q~ee~~~r~~~a 104 (524)
-++++.|+||.+.|+.++
T Consensus 293 ~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 293 PDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777777777777766
No 10
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.96 E-value=4.2e+02 Score=25.22 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhhHHHHHhhhHHHHHHHHH
Q 009839 25 EIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAE 75 (524)
Q Consensus 25 ~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~d~~~qr~~~e 75 (524)
+...+.+.|......--+.-.-..+++|+|-.++.+++..|=..|.--++|
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNe 186 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNE 186 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555443333333333456888999999999998888888777766
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.17 E-value=85 Score=34.21 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhHHhhhhHHHHhhhhhhhhhHH-------------HHHhhhHHHHHHHHHHHHHhH
Q 009839 16 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRRE-------------MDRKNDTVYQRKIAEALDNHL 81 (524)
Q Consensus 16 ~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~-------------~~~~~d~~~qr~~~e~~~~~~ 81 (524)
+.|+..++++|-++++.| ..|++=|..-.+.|-|||.+..+..+ ||.+.=+..|.++.++.-..|
T Consensus 116 RRrIqyLKekVdnQlsnI-rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHI-QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
No 12
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=24.31 E-value=5.1e+02 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=20.3
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhHHhhhhH
Q 009839 16 HQHQLGVKEEIRNLISTLETQLISENEQSNS 46 (524)
Q Consensus 16 ~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~~ 46 (524)
.+.|-.+....+.-.+.|=.+|+..+++.+.
T Consensus 86 ~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e 116 (253)
T 2d1l_A 86 CMRHRSIEAKLRQFSSALIDCLINPLQEQME 116 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777777777777777766543
No 13
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=22.41 E-value=54 Score=25.65 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=17.8
Q ss_pred HhHHHHHHhHHHHHHHHHHHhhch
Q 009839 79 NHLTAVQRDHELKSQIEERKIRSD 102 (524)
Q Consensus 79 ~~~~~~q~~~e~~~q~ee~~~r~~ 102 (524)
.=|.-+|||-+++ +.||.|||+=
T Consensus 10 ~IL~VL~RD~~lr-~~ee~RIrkL 32 (59)
T 3bc1_B 10 AIMKVLQRDAALK-RAEEERVRHL 32 (59)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHG
T ss_pred HHHHHHhhHHHHh-hChHHHHHHH
Confidence 3355679999998 8888888764
No 14
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=21.77 E-value=99 Score=32.75 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009839 135 LRAEEAKRAALEAEKRA 151 (524)
Q Consensus 135 ~~~ee~~k~~~ea~~~~ 151 (524)
++++|+|+++.||+.++
T Consensus 401 ~~e~eekr~~~e~~~~~ 417 (483)
T 2j1d_G 401 KKEEEERRARMEAQLKE 417 (483)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 15
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=21.09 E-value=4e+02 Score=22.96 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 009839 87 DHELKSQIEERK 98 (524)
Q Consensus 87 ~~e~~~q~ee~~ 98 (524)
..++-.|||+-|
T Consensus 15 E~~L~~~lE~Ar 26 (105)
T 3v6i_B 15 EKQLLERLEAAK 26 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444454443
No 16
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.51 E-value=8.5e+02 Score=26.50 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=12.5
Q ss_pred HHHHHHhhchHHHHHHHHH
Q 009839 93 QIEERKIRSDAAYEEAKRK 111 (524)
Q Consensus 93 q~ee~~~r~~~a~EEa~~~ 111 (524)
+|++.+.|.++|.-|++..
T Consensus 488 ~~~~~~~~~e~~~~~~~~l 506 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKML 506 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777776555443
Done!