Query 009842
Match_columns 524
No_of_seqs 459 out of 3981
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 17:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 2E-120 5E-125 908.5 47.0 508 2-519 48-557 (674)
2 KOG0923 mRNA splicing factor A 100.0 2E-118 5E-123 882.8 41.6 510 2-519 262-773 (902)
3 KOG0924 mRNA splicing factor A 100.0 8E-116 2E-120 866.0 41.7 511 3-520 354-864 (1042)
4 KOG0925 mRNA splicing factor A 100.0 8E-110 2E-114 797.0 38.4 504 3-519 45-554 (699)
5 COG1643 HrpA HrpA-like helicas 100.0 3E-103 6E-108 832.0 48.8 507 2-518 47-568 (845)
6 PRK11131 ATP-dependent RNA hel 100.0 3.1E-99 7E-104 827.3 50.7 504 2-523 71-592 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.9E-97 4E-102 816.5 51.0 503 2-522 64-582 (1283)
8 KOG0920 ATP-dependent RNA heli 100.0 3.2E-97 7E-102 781.0 33.9 510 2-518 170-717 (924)
9 KOG0926 DEAH-box RNA helicase 100.0 2.2E-94 4.7E-99 724.5 39.9 510 3-519 254-902 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.7E-88 2.1E-92 725.5 46.4 448 4-462 1-448 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 9E-86 2E-90 712.1 48.1 447 1-458 1-449 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 2E-59 4.2E-64 494.6 34.2 391 9-442 168-596 (675)
13 KOG0921 Dosage compensation co 100.0 2.7E-55 5.9E-60 446.6 16.0 506 3-518 376-946 (1282)
14 PRK01172 ski2-like helicase; P 100.0 3.3E-47 7.1E-52 413.4 32.9 490 4-516 21-564 (674)
15 PRK02362 ski2-like helicase; P 100.0 1.7E-45 3.6E-50 402.7 37.5 492 6-515 24-603 (737)
16 PRK00254 ski2-like helicase; P 100.0 6.8E-43 1.5E-47 381.2 33.3 492 6-515 24-594 (720)
17 KOG0331 ATP-dependent RNA heli 100.0 5.9E-42 1.3E-46 343.0 24.5 312 8-351 116-452 (519)
18 PRK11776 ATP-dependent RNA hel 100.0 3.7E-41 8E-46 351.2 27.1 311 6-351 27-353 (460)
19 KOG0330 ATP-dependent RNA heli 100.0 9.7E-42 2.1E-46 320.6 17.8 310 8-351 86-411 (476)
20 COG1204 Superfamily II helicas 100.0 1E-40 2.2E-45 357.2 27.5 496 8-517 35-618 (766)
21 PTZ00110 helicase; Provisional 100.0 3.7E-40 8E-45 347.2 27.9 313 6-350 153-487 (545)
22 PRK04837 ATP-dependent RNA hel 100.0 4.6E-40 1E-44 339.2 26.1 309 7-350 32-365 (423)
23 PRK10590 ATP-dependent RNA hel 100.0 6.6E-40 1.4E-44 340.3 26.6 310 6-350 24-355 (456)
24 PRK11634 ATP-dependent RNA hel 100.0 1.4E-39 3.1E-44 345.7 27.9 310 6-349 29-354 (629)
25 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-39 2.6E-44 342.5 25.9 311 7-351 145-479 (518)
26 COG0513 SrmB Superfamily II DN 100.0 1.1E-39 2.5E-44 340.3 25.4 307 7-347 53-380 (513)
27 PRK11192 ATP-dependent RNA hel 100.0 2.7E-39 5.9E-44 335.0 27.8 313 6-351 24-356 (434)
28 PTZ00424 helicase 45; Provisio 100.0 1.8E-39 3.9E-44 333.8 25.7 313 6-351 51-378 (401)
29 PRK04537 ATP-dependent RNA hel 100.0 2.4E-39 5.3E-44 342.1 27.3 308 7-349 33-366 (572)
30 PRK01297 ATP-dependent RNA hel 100.0 4.8E-39 1E-43 336.1 26.4 309 6-349 110-444 (475)
31 COG1202 Superfamily II helicas 100.0 2.6E-39 5.7E-44 317.3 22.3 409 13-457 225-680 (830)
32 TIGR03817 DECH_helic helicase/ 100.0 1.4E-38 3E-43 344.6 27.4 318 6-347 37-386 (742)
33 PLN03137 ATP-dependent DNA hel 100.0 1.8E-38 3.9E-43 341.6 23.5 307 6-351 461-791 (1195)
34 TIGR00614 recQ_fam ATP-depende 100.0 2.4E-38 5.3E-43 329.6 23.3 304 7-351 13-337 (470)
35 KOG0333 U5 snRNP-like RNA heli 100.0 1.7E-38 3.6E-43 308.8 18.1 305 10-349 272-626 (673)
36 KOG0342 ATP-dependent RNA heli 100.0 2.2E-37 4.8E-42 299.7 22.4 311 6-350 105-440 (543)
37 PRK11057 ATP-dependent DNA hel 100.0 2.4E-37 5.3E-42 330.3 23.4 305 6-351 26-347 (607)
38 KOG0338 ATP-dependent RNA heli 100.0 4E-38 8.7E-43 305.0 14.0 309 9-350 207-536 (691)
39 KOG0328 Predicted ATP-dependen 100.0 6.8E-37 1.5E-41 276.2 17.0 311 8-351 52-377 (400)
40 KOG0345 ATP-dependent RNA heli 100.0 2E-36 4.3E-41 291.1 20.6 328 7-366 30-385 (567)
41 TIGR01389 recQ ATP-dependent D 100.0 3E-36 6.6E-41 322.9 24.3 303 6-350 14-334 (591)
42 PRK13767 ATP-dependent helicas 100.0 7E-36 1.5E-40 329.9 25.9 313 6-343 33-396 (876)
43 KOG0340 ATP-dependent RNA heli 100.0 3.7E-36 8E-41 279.8 18.2 313 8-351 32-365 (442)
44 KOG0343 RNA Helicase [RNA proc 100.0 2.9E-36 6.2E-41 294.7 17.7 313 7-351 93-426 (758)
45 KOG0326 ATP-dependent RNA heli 100.0 1.5E-36 3.3E-41 278.3 12.8 309 9-351 111-433 (459)
46 COG1201 Lhr Lhr-like helicases 100.0 5.7E-35 1.2E-39 308.7 25.5 299 7-335 24-348 (814)
47 KOG0952 DNA/RNA helicase MER3/ 100.0 1.8E-34 4E-39 300.6 24.4 474 10-498 115-683 (1230)
48 PRK09751 putative ATP-dependen 100.0 9E-35 2E-39 325.7 22.9 296 25-341 1-379 (1490)
49 COG0514 RecQ Superfamily II DN 100.0 1.2E-34 2.7E-39 295.8 20.8 304 8-350 20-340 (590)
50 KOG0335 ATP-dependent RNA heli 100.0 1.2E-34 2.7E-39 285.5 15.8 303 9-345 100-442 (482)
51 KOG0332 ATP-dependent RNA heli 100.0 4.2E-34 9E-39 267.7 18.2 315 9-350 116-446 (477)
52 COG1111 MPH1 ERCC4-like helica 100.0 4.6E-33 1E-37 272.0 24.9 324 4-349 14-483 (542)
53 KOG0348 ATP-dependent RNA heli 100.0 1.1E-33 2.5E-38 275.7 19.8 340 8-368 162-576 (708)
54 TIGR00580 mfd transcription-re 100.0 2.7E-33 5.8E-38 306.2 24.6 299 6-347 452-770 (926)
55 KOG0336 ATP-dependent RNA heli 100.0 8.5E-34 1.8E-38 268.1 15.4 308 10-351 247-576 (629)
56 PRK10917 ATP-dependent DNA hel 100.0 7.4E-33 1.6E-37 298.9 24.6 299 4-345 260-587 (681)
57 TIGR00643 recG ATP-dependent D 100.0 2.4E-32 5.2E-37 293.1 24.4 301 5-344 235-563 (630)
58 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-32 4.8E-37 276.7 22.6 291 22-348 1-337 (358)
59 PRK10689 transcription-repair 100.0 1.5E-32 3.2E-37 306.6 22.9 298 6-346 601-918 (1147)
60 KOG0341 DEAD-box protein abstr 100.0 1.2E-33 2.7E-38 265.3 10.0 303 14-351 201-532 (610)
61 KOG0339 ATP-dependent RNA heli 100.0 1.6E-32 3.5E-37 265.9 16.3 310 8-351 248-579 (731)
62 KOG0347 RNA helicase [RNA proc 100.0 2.4E-33 5.2E-38 274.2 9.2 306 13-351 212-574 (731)
63 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-31 3.3E-36 284.4 23.4 292 5-335 15-377 (844)
64 KOG0350 DEAD-box ATP-dependent 100.0 9.8E-32 2.1E-36 260.5 16.0 315 7-351 161-544 (620)
65 KOG0354 DEAD-box like helicase 100.0 8.1E-31 1.8E-35 270.8 23.7 320 3-348 60-530 (746)
66 KOG0346 RNA helicase [RNA proc 100.0 1.3E-31 2.7E-36 255.9 16.4 308 9-350 45-413 (569)
67 TIGR03158 cas3_cyano CRISPR-as 100.0 2.6E-30 5.6E-35 259.2 25.5 285 9-333 1-357 (357)
68 PHA02558 uvsW UvsW helicase; P 100.0 8E-30 1.7E-34 267.0 23.8 296 4-339 113-443 (501)
69 KOG0344 ATP-dependent RNA heli 100.0 2.6E-30 5.6E-35 256.5 17.1 312 11-351 164-499 (593)
70 KOG0951 RNA helicase BRR2, DEA 100.0 1.8E-29 3.9E-34 266.5 23.7 428 10-446 314-836 (1674)
71 KOG4284 DEAD box protein [Tran 100.0 6E-30 1.3E-34 254.4 16.4 313 8-349 50-381 (980)
72 KOG0947 Cytoplasmic exosomal R 100.0 1E-29 2.2E-34 262.5 16.6 326 3-347 295-723 (1248)
73 PRK13766 Hef nuclease; Provisi 100.0 4.2E-28 9.2E-33 268.8 27.4 316 3-349 13-481 (773)
74 COG1205 Distinct helicase fami 100.0 1.4E-28 3E-33 267.7 22.9 327 5-351 70-426 (851)
75 KOG0352 ATP-dependent DNA heli 100.0 2.9E-29 6.2E-34 238.8 14.6 304 9-351 25-366 (641)
76 COG4581 Superfamily II RNA hel 100.0 6.8E-29 1.5E-33 266.3 18.4 330 3-347 117-537 (1041)
77 KOG0948 Nuclear exosomal RNA h 100.0 8.5E-30 1.8E-34 257.1 10.8 326 4-348 128-540 (1041)
78 PRK09401 reverse gyrase; Revie 100.0 8.6E-29 1.9E-33 277.1 20.0 276 5-305 80-413 (1176)
79 KOG0327 Translation initiation 100.0 1.4E-28 3E-33 232.8 16.6 310 5-351 49-374 (397)
80 KOG0351 ATP-dependent DNA heli 100.0 6.6E-29 1.4E-33 268.1 15.4 303 8-351 267-596 (941)
81 KOG0334 RNA helicase [RNA proc 100.0 3E-28 6.5E-33 256.6 18.1 311 5-349 387-722 (997)
82 PRK14701 reverse gyrase; Provi 99.9 1.7E-27 3.7E-32 272.1 18.0 315 5-349 79-458 (1638)
83 PRK09694 helicase Cas3; Provis 99.9 3.6E-26 7.8E-31 247.8 25.3 297 6-335 287-662 (878)
84 KOG0337 ATP-dependent RNA heli 99.9 1.4E-27 3E-32 227.3 11.6 307 9-349 47-370 (529)
85 TIGR00603 rad25 DNA repair hel 99.9 7.5E-26 1.6E-30 238.8 25.9 303 4-351 254-611 (732)
86 TIGR01054 rgy reverse gyrase. 99.9 2.2E-26 4.7E-31 258.2 21.9 275 5-305 78-412 (1171)
87 PRK05580 primosome assembly pr 99.9 1.5E-25 3.3E-30 241.2 22.1 313 4-343 143-545 (679)
88 COG1200 RecG RecG-like helicas 99.9 1.4E-25 3.1E-30 228.8 19.0 303 4-348 261-592 (677)
89 COG4098 comFA Superfamily II D 99.9 1.4E-24 3E-29 202.2 23.7 292 11-343 107-412 (441)
90 TIGR00595 priA primosomal prot 99.9 2E-25 4.3E-30 232.1 18.8 292 24-342 1-376 (505)
91 TIGR03714 secA2 accessory Sec 99.9 2.6E-24 5.5E-29 227.2 26.3 108 211-349 422-539 (762)
92 PRK09200 preprotein translocas 99.9 2.2E-24 4.8E-29 229.9 23.1 108 212-349 427-543 (790)
93 COG1061 SSL2 DNA or RNA helica 99.9 5.6E-24 1.2E-28 218.6 23.2 289 3-335 34-376 (442)
94 KOG0353 ATP-dependent DNA heli 99.9 4.2E-24 9E-29 200.9 19.9 301 7-349 96-469 (695)
95 PRK12898 secA preprotein trans 99.9 4.9E-24 1.1E-28 222.6 22.6 106 213-348 473-587 (656)
96 COG1197 Mfd Transcription-repa 99.9 1.1E-23 2.3E-28 226.5 24.1 293 12-348 605-914 (1139)
97 KOG0950 DNA polymerase theta/e 99.9 8.9E-24 1.9E-28 220.4 19.2 324 7-349 225-613 (1008)
98 TIGR00963 secA preprotein tran 99.9 2.6E-23 5.7E-28 218.2 21.0 117 201-349 395-519 (745)
99 PRK11448 hsdR type I restricti 99.9 1.7E-22 3.8E-27 225.4 26.3 307 4-337 412-802 (1123)
100 COG1203 CRISPR-associated heli 99.9 1.9E-21 4.1E-26 211.6 20.2 307 6-344 196-547 (733)
101 PRK04914 ATP-dependent helicas 99.9 1.3E-20 2.9E-25 206.0 23.9 316 4-350 151-608 (956)
102 KOG0949 Predicted helicase, DE 99.9 2.1E-21 4.5E-26 201.7 15.5 162 5-170 511-682 (1330)
103 KOG0329 ATP-dependent RNA heli 99.8 1.2E-19 2.5E-24 162.6 12.1 278 5-351 65-359 (387)
104 PRK13104 secA preprotein trans 99.8 7.6E-19 1.6E-23 187.4 19.8 77 200-290 433-509 (896)
105 PRK12906 secA preprotein trans 99.8 5.6E-19 1.2E-23 187.4 18.6 109 211-349 438-555 (796)
106 PRK12904 preprotein translocas 99.8 1.2E-18 2.6E-23 185.7 18.6 126 211-348 428-574 (830)
107 TIGR00631 uvrb excinuclease AB 99.8 2.9E-17 6.2E-22 175.3 24.5 115 211-348 440-554 (655)
108 PF04408 HA2: Helicase associa 99.8 6.2E-19 1.4E-23 143.4 8.3 95 399-493 1-102 (102)
109 KOG0953 Mitochondrial RNA heli 99.8 6.8E-18 1.5E-22 166.8 16.1 282 19-348 190-478 (700)
110 KOG0349 Putative DEAD-box RNA 99.8 2.2E-18 4.8E-23 165.1 11.1 271 49-344 286-612 (725)
111 COG1198 PriA Primosomal protei 99.7 3.7E-17 8.1E-22 172.9 18.8 311 4-342 197-598 (730)
112 KOG0921 Dosage compensation co 99.7 1E-19 2.2E-24 187.7 -3.0 445 4-462 405-896 (1282)
113 COG1110 Reverse gyrase [DNA re 99.7 3.9E-16 8.4E-21 164.6 20.3 275 4-304 81-419 (1187)
114 TIGR00348 hsdR type I site-spe 99.7 2.9E-16 6.3E-21 169.5 19.7 284 21-338 264-638 (667)
115 PF00270 DEAD: DEAD/DEAH box h 99.7 3E-17 6.5E-22 147.7 10.0 156 8-166 2-167 (169)
116 PRK13107 preprotein translocas 99.7 3.9E-16 8.5E-21 166.3 19.1 78 199-290 437-514 (908)
117 COG4096 HsdR Type I site-speci 99.7 2.4E-15 5.3E-20 156.4 23.8 292 7-335 167-525 (875)
118 cd00268 DEADc DEAD-box helicas 99.7 5E-16 1.1E-20 144.2 15.5 156 6-163 22-187 (203)
119 smart00847 HA2 Helicase associ 99.7 1.1E-16 2.4E-21 128.2 8.2 89 400-493 2-92 (92)
120 PRK12899 secA preprotein trans 99.7 5.8E-15 1.3E-19 157.7 20.9 121 6-128 93-226 (970)
121 COG0556 UvrB Helicase subunit 99.6 2.5E-14 5.4E-19 141.5 21.8 167 150-344 386-554 (663)
122 PRK05298 excinuclease ABC subu 99.6 1.9E-15 4.1E-20 162.6 13.4 113 211-346 444-556 (652)
123 KOG4150 Predicted ATP-dependen 99.6 1.5E-15 3.3E-20 150.3 11.0 313 6-340 287-633 (1034)
124 TIGR01407 dinG_rel DnaQ family 99.6 1.8E-13 4E-18 152.4 26.9 183 151-343 596-811 (850)
125 PLN03142 Probable chromatin-re 99.6 1.8E-13 3.9E-18 150.9 22.4 112 212-351 486-603 (1033)
126 cd00079 HELICc Helicase superf 99.6 1.4E-14 3.1E-19 124.1 10.4 103 212-342 27-130 (131)
127 TIGR02562 cas3_yersinia CRISPR 99.6 5.4E-13 1.2E-17 143.8 23.5 97 216-337 759-881 (1110)
128 KOG0951 RNA helicase BRR2, DEA 99.5 2.8E-13 6.1E-18 145.2 19.2 319 18-359 1157-1508(1674)
129 PF00271 Helicase_C: Helicase 99.5 5.8E-15 1.3E-19 114.4 4.2 71 247-335 7-77 (78)
130 KOG1123 RNA polymerase II tran 99.5 2E-13 4.3E-18 133.7 13.0 301 5-349 302-655 (776)
131 PRK12900 secA preprotein trans 99.5 1.9E-13 4.2E-18 146.6 13.7 164 152-349 535-713 (1025)
132 PF07652 Flavi_DEAD: Flaviviru 99.5 1.4E-13 3.1E-18 115.3 10.0 136 18-163 2-139 (148)
133 cd00046 DEXDc DEAD-like helica 99.5 4.7E-13 1E-17 115.8 13.4 136 21-160 1-144 (144)
134 smart00487 DEXDc DEAD-like hel 99.5 9.9E-13 2.1E-17 120.9 15.1 156 4-161 7-171 (201)
135 PRK07246 bifunctional ATP-depe 99.5 2.7E-11 6E-16 133.4 27.4 134 194-343 630-780 (820)
136 PRK12326 preprotein translocas 99.4 7.4E-12 1.6E-16 130.9 19.1 119 198-348 414-548 (764)
137 PF04851 ResIII: Type III rest 99.4 4.2E-12 9E-17 115.6 11.9 147 4-161 2-183 (184)
138 smart00490 HELICc helicase sup 99.4 9.1E-13 2E-17 102.8 5.4 71 247-335 11-81 (82)
139 PRK13103 secA preprotein trans 99.3 3E-11 6.5E-16 129.5 15.4 104 23-128 98-213 (913)
140 PRK12903 secA preprotein trans 99.3 2.2E-10 4.8E-15 121.8 20.2 117 199-347 414-539 (925)
141 PRK14873 primosome assembly pr 99.3 9.8E-11 2.1E-15 125.2 16.7 134 24-166 164-309 (665)
142 PRK08074 bifunctional ATP-depe 99.3 2.5E-09 5.4E-14 120.2 28.6 140 195-343 735-890 (928)
143 PF02399 Herpes_ori_bp: Origin 99.2 1E-09 2.2E-14 116.1 22.2 288 18-347 47-388 (824)
144 CHL00122 secA preprotein trans 99.2 9.3E-10 2E-14 117.7 18.5 77 199-289 412-490 (870)
145 TIGR03117 cas_csf4 CRISPR-asso 99.2 4.6E-08 1E-12 103.6 30.4 136 196-345 454-615 (636)
146 KOG0385 Chromatin remodeling c 99.2 1.2E-09 2.6E-14 112.8 17.0 303 17-351 183-603 (971)
147 PRK12902 secA preprotein trans 99.1 1.4E-08 3.1E-13 108.7 21.4 77 199-289 427-505 (939)
148 KOG0384 Chromodomain-helicase 98.9 3.5E-08 7.7E-13 107.0 15.5 118 211-353 697-817 (1373)
149 KOG0387 Transcription-coupled 98.9 1.8E-07 3.8E-12 97.6 20.0 115 213-351 546-662 (923)
150 KOG1000 Chromatin remodeling p 98.8 1.1E-06 2.4E-11 87.1 23.3 273 9-302 203-573 (689)
151 COG4889 Predicted helicase [Ge 98.8 1.4E-08 2.9E-13 106.4 8.7 109 215-341 462-578 (1518)
152 KOG0390 DNA repair protein, SN 98.7 1.4E-06 3E-11 93.0 20.4 91 246-351 618-711 (776)
153 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 2.5E-08 5.5E-13 93.0 6.5 150 17-170 27-207 (254)
154 COG1120 FepC ABC-type cobalami 98.7 1.3E-07 2.8E-12 88.8 10.9 145 16-161 24-200 (258)
155 KOG0952 DNA/RNA helicase MER3/ 98.7 7.6E-09 1.6E-13 110.5 2.4 232 2-234 909-1174(1230)
156 COG4555 NatA ABC-type Na+ tran 98.6 1.3E-07 2.7E-12 83.6 8.0 144 17-161 25-194 (245)
157 cd03216 ABC_Carb_Monos_I This 98.6 3.5E-07 7.7E-12 81.4 11.2 120 17-160 23-142 (163)
158 cd03222 ABC_RNaseL_inhibitor T 98.6 4E-07 8.6E-12 81.7 11.3 111 16-160 21-132 (177)
159 COG1126 GlnQ ABC-type polar am 98.6 3.3E-07 7.2E-12 82.1 10.0 143 16-161 24-197 (240)
160 cd03229 ABC_Class3 This class 98.6 9.7E-08 2.1E-12 86.4 6.4 134 17-160 23-161 (178)
161 cd03246 ABCC_Protease_Secretio 98.6 7.1E-07 1.5E-11 80.3 11.4 130 17-160 25-156 (173)
162 cd03230 ABC_DR_subfamily_A Thi 98.5 1.4E-07 2.9E-12 85.0 6.6 129 17-159 23-154 (173)
163 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.5 7E-07 1.5E-11 77.6 10.5 105 17-160 23-127 (144)
164 cd03228 ABCC_MRP_Like The MRP 98.5 8.7E-07 1.9E-11 79.6 11.2 129 17-160 25-155 (171)
165 cd03214 ABC_Iron-Siderophores_ 98.5 5.3E-07 1.1E-11 81.8 9.5 136 17-161 22-159 (180)
166 COG1127 Ttg2A ABC-type transpo 98.5 5.2E-07 1.1E-11 82.2 9.0 144 16-162 30-208 (263)
167 cd03247 ABCC_cytochrome_bd The 98.5 9.9E-07 2.2E-11 79.8 11.0 130 17-160 25-157 (178)
168 COG1419 FlhF Flagellar GTP-bin 98.5 2.6E-06 5.7E-11 84.2 14.0 129 19-170 202-333 (407)
169 KOG0392 SNF2 family DNA-depend 98.5 5.8E-06 1.2E-10 90.2 17.4 116 214-351 1341-1458(1549)
170 PF00448 SRP54: SRP54-type pro 98.5 1.7E-06 3.7E-11 79.1 11.5 128 21-165 2-130 (196)
171 cd00267 ABC_ATPase ABC (ATP-bi 98.5 1.1E-06 2.4E-11 77.7 9.9 119 17-160 22-140 (157)
172 COG1131 CcmA ABC-type multidru 98.4 8.3E-07 1.8E-11 86.6 9.5 141 17-160 28-197 (293)
173 cd03233 ABC_PDR_domain1 The pl 98.4 2.9E-07 6.3E-12 85.1 5.9 151 17-168 30-186 (202)
174 COG1119 ModF ABC-type molybden 98.4 1.3E-06 2.9E-11 79.9 9.6 143 17-160 54-233 (257)
175 cd03215 ABC_Carb_Monos_II This 98.4 1.5E-06 3.2E-11 79.0 9.5 133 17-160 23-164 (182)
176 cd03213 ABCG_EPDR ABCG transpo 98.4 3.3E-07 7.1E-12 84.2 5.1 130 17-161 32-172 (194)
177 COG1116 TauB ABC-type nitrate/ 98.4 4.8E-06 1.1E-10 76.9 12.5 140 16-162 25-193 (248)
178 PF13401 AAA_22: AAA domain; P 98.4 3.4E-07 7.3E-12 78.3 4.7 113 18-157 2-123 (131)
179 PRK12723 flagellar biosynthesi 98.4 5E-06 1.1E-10 83.6 13.6 127 20-169 174-306 (388)
180 COG1122 CbiO ABC-type cobalt t 98.4 4.3E-07 9.2E-12 85.0 5.5 150 17-169 27-206 (235)
181 COG1136 SalX ABC-type antimicr 98.4 1.3E-06 2.9E-11 80.3 8.5 142 16-159 27-202 (226)
182 PRK13541 cytochrome c biogenes 98.4 5.7E-07 1.2E-11 82.7 6.3 143 17-160 23-183 (195)
183 PRK13540 cytochrome c biogenes 98.4 9.5E-07 2.1E-11 81.6 7.7 144 17-161 24-188 (200)
184 COG2884 FtsE Predicted ATPase 98.4 1E-06 2.2E-11 77.3 7.0 150 16-168 24-203 (223)
185 cd03223 ABCD_peroxisomal_ALDP 98.4 3.2E-06 7E-11 75.5 10.4 118 17-160 24-148 (166)
186 TIGR01188 drrA daunorubicin re 98.4 6.4E-07 1.4E-11 88.3 6.4 145 16-161 15-185 (302)
187 PRK12901 secA preprotein trans 98.4 3.3E-06 7.1E-11 92.0 12.2 163 152-347 565-741 (1112)
188 TIGR02868 CydC thiol reductant 98.4 1.1E-06 2.3E-11 94.0 8.6 140 17-158 358-527 (529)
189 PRK14722 flhF flagellar biosyn 98.4 4.7E-06 1E-10 83.1 12.5 125 18-165 135-262 (374)
190 cd03238 ABC_UvrA The excision 98.3 4.3E-06 9.4E-11 75.0 11.0 126 16-161 17-150 (176)
191 PRK13537 nodulation ABC transp 98.3 7.4E-07 1.6E-11 87.8 6.6 144 17-161 30-199 (306)
192 PRK11889 flhF flagellar biosyn 98.3 1E-05 2.2E-10 80.3 14.3 124 20-164 241-366 (436)
193 PRK13538 cytochrome c biogenes 98.3 1.5E-06 3.3E-11 80.4 8.1 142 16-160 23-189 (204)
194 cd03231 ABC_CcmA_heme_exporter 98.3 1.4E-06 3.1E-11 80.5 7.7 142 17-159 23-184 (201)
195 COG0610 Type I site-specific r 98.3 1.6E-05 3.4E-10 89.5 17.3 133 21-160 274-413 (962)
196 cd03232 ABC_PDR_domain2 The pl 98.3 7.5E-07 1.6E-11 81.6 5.7 130 16-161 29-169 (192)
197 COG1124 DppF ABC-type dipeptid 98.3 1.9E-06 4.1E-11 78.9 8.1 146 17-171 30-210 (252)
198 KOG0058 Peptide exporter, ABC 98.3 9.6E-07 2.1E-11 92.5 7.0 141 16-158 490-661 (716)
199 COG1117 PstB ABC-type phosphat 98.3 8.9E-07 1.9E-11 79.1 5.8 60 100-161 150-209 (253)
200 cd03226 ABC_cobalt_CbiO_domain 98.3 1.6E-06 3.5E-11 80.4 7.5 140 17-160 23-186 (205)
201 TIGR00960 3a0501s02 Type II (G 98.3 2E-06 4.3E-11 80.5 8.1 143 17-160 26-198 (216)
202 TIGR01189 ccmA heme ABC export 98.3 2.4E-06 5.2E-11 78.7 8.5 140 17-160 23-187 (198)
203 COG3840 ThiQ ABC-type thiamine 98.3 1.7E-06 3.6E-11 75.4 6.6 145 16-161 21-191 (231)
204 cd03269 ABC_putative_ATPase Th 98.3 7.4E-07 1.6E-11 83.0 4.9 141 17-160 23-188 (210)
205 PRK13536 nodulation factor exp 98.3 9.8E-07 2.1E-11 88.0 5.8 144 17-161 64-233 (340)
206 cd03217 ABC_FeS_Assembly ABC-t 98.3 7.7E-06 1.7E-10 75.5 11.4 134 16-160 22-164 (200)
207 PRK13539 cytochrome c biogenes 98.3 3.1E-06 6.8E-11 78.6 8.4 140 16-160 24-187 (207)
208 cd03237 ABC_RNaseL_inhibitor_d 98.3 3E-06 6.4E-11 80.8 8.4 137 17-160 22-176 (246)
209 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.3 7.9E-07 1.7E-11 83.3 4.3 144 17-161 27-202 (218)
210 COG4152 ABC-type uncharacteriz 98.3 2E-06 4.4E-11 78.4 6.6 144 16-160 24-190 (300)
211 TIGR03608 L_ocin_972_ABC putat 98.3 2.2E-06 4.7E-11 79.6 7.1 144 17-161 21-195 (206)
212 cd03262 ABC_HisP_GlnQ_permease 98.2 1.5E-05 3.2E-10 74.4 12.5 143 17-160 23-195 (213)
213 cd03265 ABC_DrrA DrrA is the A 98.2 1.6E-06 3.6E-11 81.3 5.9 141 17-160 23-192 (220)
214 TIGR02673 FtsE cell division A 98.2 5.3E-06 1.2E-10 77.5 9.3 144 16-160 24-197 (214)
215 TIGR01166 cbiO cobalt transpor 98.2 3.6E-06 7.9E-11 77.0 8.0 64 96-160 124-187 (190)
216 COG4608 AppF ABC-type oligopep 98.2 1.2E-05 2.6E-10 75.3 11.3 140 16-171 35-178 (268)
217 COG1135 AbcC ABC-type metal io 98.2 2.9E-06 6.2E-11 80.3 7.3 143 16-161 28-203 (339)
218 COG1134 TagH ABC-type polysacc 98.2 1.5E-05 3.2E-10 73.3 11.6 151 17-170 50-215 (249)
219 cd03261 ABC_Org_Solvent_Resist 98.2 2.5E-06 5.5E-11 80.9 7.1 143 17-160 23-197 (235)
220 cd03268 ABC_BcrA_bacitracin_re 98.2 3.7E-06 8.1E-11 78.1 8.0 148 17-168 23-192 (208)
221 cd03225 ABC_cobalt_CbiO_domain 98.2 3.4E-06 7.3E-11 78.6 7.7 143 17-160 24-194 (211)
222 cd03266 ABC_NatA_sodium_export 98.2 1.8E-06 3.8E-11 81.0 5.7 143 17-160 28-196 (218)
223 cd03258 ABC_MetN_methionine_tr 98.2 2.9E-06 6.3E-11 80.4 7.2 150 17-169 28-208 (233)
224 PRK10908 cell division protein 98.2 3.3E-06 7E-11 79.4 7.3 143 17-160 25-197 (222)
225 PRK13543 cytochrome c biogenes 98.2 6.2E-06 1.3E-10 77.0 9.0 141 17-160 34-197 (214)
226 PRK09544 znuC high-affinity zi 98.2 3E-06 6.6E-11 81.0 7.1 137 17-160 27-181 (251)
227 TIGR01288 nodI ATP-binding ABC 98.2 2.2E-06 4.9E-11 84.4 6.3 141 17-160 27-195 (303)
228 cd03263 ABC_subfamily_A The AB 98.2 2.6E-06 5.6E-11 79.9 6.4 147 17-169 25-199 (220)
229 TIGR03522 GldA_ABC_ATP gliding 98.2 2E-06 4.4E-11 84.6 5.9 143 17-161 25-193 (301)
230 PRK13635 cbiO cobalt transport 98.2 5.3E-06 1.2E-10 80.7 8.6 144 17-161 30-202 (279)
231 TIGR03771 anch_rpt_ABC anchore 98.2 2.3E-05 4.9E-10 73.7 12.6 144 17-161 3-174 (223)
232 PRK12726 flagellar biosynthesi 98.2 1.9E-05 4.1E-10 78.0 12.3 132 18-169 204-336 (407)
233 TIGR03740 galliderm_ABC gallid 98.2 5.5E-06 1.2E-10 77.9 8.4 146 17-168 23-190 (223)
234 TIGR03864 PQQ_ABC_ATP ABC tran 98.2 2.1E-06 4.6E-11 81.5 5.5 142 17-161 24-194 (236)
235 cd03293 ABC_NrtD_SsuB_transpor 98.2 1.7E-05 3.7E-10 74.4 11.3 141 17-160 27-192 (220)
236 cd03256 ABC_PhnC_transporter A 98.2 3.4E-06 7.4E-11 80.3 6.6 64 96-160 141-205 (241)
237 PRK15177 Vi polysaccharide exp 98.2 6.1E-06 1.3E-10 76.9 8.0 142 17-160 10-163 (213)
238 cd03218 ABC_YhbG The ABC trans 98.2 3.5E-06 7.6E-11 79.8 6.6 143 17-160 23-193 (232)
239 cd03224 ABC_TM1139_LivF_branch 98.2 2.2E-06 4.7E-11 80.6 5.0 143 17-160 23-192 (222)
240 TIGR02315 ABC_phnC phosphonate 98.2 3.5E-06 7.5E-11 80.4 6.5 64 96-160 142-206 (243)
241 COG4988 CydD ABC-type transpor 98.2 1.7E-05 3.7E-10 81.5 11.7 142 16-160 343-515 (559)
242 PRK13650 cbiO cobalt transport 98.2 6.9E-06 1.5E-10 80.0 8.6 144 17-161 30-202 (279)
243 cd03248 ABCC_TAP TAP, the Tran 98.2 1.3E-05 2.7E-10 75.6 10.1 143 17-161 37-210 (226)
244 PRK13644 cbiO cobalt transport 98.1 5.1E-06 1.1E-10 80.6 7.6 144 17-161 25-197 (274)
245 PRK13546 teichoic acids export 98.1 2.9E-05 6.3E-10 74.8 12.6 141 17-160 47-203 (264)
246 cd03292 ABC_FtsE_transporter F 98.1 4.9E-06 1.1E-10 77.7 7.1 141 17-160 24-196 (214)
247 TIGR02211 LolD_lipo_ex lipopro 98.1 2.7E-05 5.9E-10 73.0 12.1 143 17-160 28-202 (221)
248 cd03235 ABC_Metallic_Cations A 98.1 2.4E-05 5.2E-10 73.0 11.6 141 16-160 21-192 (213)
249 PRK11174 cysteine/glutathione 98.1 3.9E-06 8.5E-11 90.9 7.2 141 17-160 373-544 (588)
250 cd00009 AAA The AAA+ (ATPases 98.1 5.7E-05 1.2E-09 65.3 13.4 37 9-45 6-44 (151)
251 PRK10536 hypothetical protein; 98.1 9.9E-06 2.2E-10 75.9 8.8 57 4-60 58-115 (262)
252 PRK13631 cbiO cobalt transport 98.1 4.1E-06 8.9E-11 82.9 6.7 65 96-161 173-237 (320)
253 PRK13643 cbiO cobalt transport 98.1 4.6E-06 9.9E-11 81.6 6.9 148 17-168 29-210 (288)
254 cd03251 ABCC_MsbA MsbA is an e 98.1 9.9E-06 2.1E-10 76.8 9.0 142 17-160 25-197 (234)
255 cd03219 ABC_Mj1267_LivG_branch 98.1 3.7E-06 8E-11 79.9 6.0 64 96-160 140-203 (236)
256 PRK09493 glnQ glutamine ABC tr 98.1 3.1E-06 6.8E-11 80.6 5.5 143 17-160 24-196 (240)
257 PRK13634 cbiO cobalt transport 98.1 4.3E-06 9.4E-11 81.8 6.6 149 17-169 30-213 (290)
258 PRK05703 flhF flagellar biosyn 98.1 5.6E-05 1.2E-09 77.5 14.9 126 19-167 220-349 (424)
259 TIGR02314 ABC_MetN D-methionin 98.1 2.3E-06 5E-11 85.2 4.6 144 17-169 28-208 (343)
260 TIGR01186 proV glycine betaine 98.1 2.1E-05 4.6E-10 78.9 11.4 138 17-161 16-191 (363)
261 TIGR01277 thiQ thiamine ABC tr 98.1 8.6E-06 1.9E-10 76.0 8.1 142 16-160 20-189 (213)
262 COG3839 MalK ABC-type sugar tr 98.1 1.2E-06 2.5E-11 85.7 2.2 128 16-144 25-177 (338)
263 PRK11247 ssuB aliphatic sulfon 98.1 2.8E-05 6E-10 74.6 11.7 137 17-160 35-194 (257)
264 COG1118 CysA ABC-type sulfate/ 98.1 7E-06 1.5E-10 77.6 7.2 147 12-160 20-198 (345)
265 PRK09536 btuD corrinoid ABC tr 98.1 4.4E-06 9.6E-11 84.9 6.4 143 17-160 26-199 (402)
266 cd03369 ABCC_NFT1 Domain 2 of 98.1 8.2E-06 1.8E-10 75.8 7.8 143 17-161 31-185 (207)
267 cd03254 ABCC_Glucan_exporter_l 98.1 5.3E-06 1.1E-10 78.4 6.6 142 17-160 26-198 (229)
268 PRK10584 putative ABC transpor 98.1 1.6E-05 3.4E-10 75.1 9.7 143 17-160 33-207 (228)
269 cd03294 ABC_Pro_Gly_Bertaine T 98.1 2.9E-05 6.3E-10 75.2 11.8 64 96-160 157-221 (269)
270 PF06862 DUF1253: Protein of u 98.1 0.00044 9.5E-09 70.2 20.4 232 94-351 131-419 (442)
271 PRK10247 putative ABC transpor 98.1 3.2E-05 6.9E-10 72.8 11.7 143 17-161 30-199 (225)
272 cd03260 ABC_PstB_phosphate_tra 98.1 1E-05 2.2E-10 76.3 8.3 61 98-160 140-200 (227)
273 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 1.6E-05 3.4E-10 75.6 9.6 142 17-160 26-198 (238)
274 cd03253 ABCC_ATM1_transporter 98.1 1.1E-05 2.4E-10 76.5 8.6 63 97-161 135-197 (236)
275 COG4604 CeuD ABC-type enteroch 98.1 4.4E-05 9.5E-10 67.6 11.4 149 16-171 23-204 (252)
276 COG4133 CcmA ABC-type transpor 98.1 1.3E-05 2.9E-10 70.4 8.1 118 17-135 25-165 (209)
277 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 1.3E-05 2.9E-10 75.3 8.9 140 17-160 45-202 (224)
278 TIGR02857 CydD thiol reductant 98.1 5E-06 1.1E-10 88.8 6.8 143 16-160 344-517 (529)
279 cd03259 ABC_Carb_Solutes_like 98.1 2.3E-06 5.1E-11 79.8 3.7 142 16-160 22-191 (213)
280 TIGR03375 type_I_sec_LssB type 98.1 1.7E-05 3.7E-10 87.6 11.1 137 17-161 488-661 (694)
281 PRK13657 cyclic beta-1,2-gluca 98.1 5.6E-06 1.2E-10 89.6 7.2 142 17-160 358-530 (588)
282 PF00176 SNF2_N: SNF2 family N 98.1 1.3E-05 2.8E-10 78.9 9.1 133 18-161 23-173 (299)
283 cd03301 ABC_MalK_N The N-termi 98.1 2.5E-06 5.4E-11 79.6 3.8 141 17-160 23-191 (213)
284 PRK13633 cobalt transporter AT 98.1 8E-06 1.7E-10 79.6 7.5 144 17-161 33-206 (280)
285 PRK13640 cbiO cobalt transport 98.1 8.2E-06 1.8E-10 79.6 7.5 144 17-161 30-205 (282)
286 cd03250 ABCC_MRP_domain1 Domai 98.1 3.1E-05 6.7E-10 71.7 11.0 139 17-160 28-188 (204)
287 PF13604 AAA_30: AAA domain; P 98.1 8.5E-06 1.8E-10 74.7 7.1 126 7-159 3-130 (196)
288 cd03298 ABC_ThiQ_thiamine_tran 98.1 9.6E-06 2.1E-10 75.5 7.6 140 16-160 20-189 (211)
289 TIGR03410 urea_trans_UrtE urea 98.1 4.8E-06 1E-10 78.7 5.6 143 17-160 23-192 (230)
290 PRK11153 metN DL-methionine tr 98.1 5E-06 1.1E-10 83.3 6.0 141 17-160 28-201 (343)
291 COG4987 CydC ABC-type transpor 98.1 1.1E-05 2.3E-10 81.8 8.2 142 16-161 360-534 (573)
292 PRK14974 cell division protein 98.1 5.3E-05 1.1E-09 74.9 13.0 124 20-163 140-267 (336)
293 cd03252 ABCC_Hemolysin The ABC 98.1 1.5E-05 3.2E-10 75.8 8.8 141 17-160 25-197 (237)
294 PRK13647 cbiO cobalt transport 98.1 1E-05 2.2E-10 78.6 7.8 150 17-169 28-205 (274)
295 PRK11231 fecE iron-dicitrate t 98.1 5.7E-06 1.2E-10 79.5 6.0 143 17-160 25-198 (255)
296 PRK11629 lolD lipoprotein tran 98.1 4.1E-05 8.8E-10 72.5 11.7 64 97-161 143-207 (233)
297 cd03295 ABC_OpuCA_Osmoprotecti 98.1 1E-05 2.2E-10 77.2 7.6 143 17-160 24-196 (242)
298 PRK11124 artP arginine transpo 98.1 6.3E-06 1.4E-10 78.6 6.2 63 97-160 139-201 (242)
299 PRK11308 dppF dipeptide transp 98.1 6.9E-06 1.5E-10 81.6 6.5 64 97-161 152-216 (327)
300 PRK11176 lipid transporter ATP 98.1 1.1E-05 2.5E-10 87.2 8.8 142 17-160 366-539 (582)
301 PRK13648 cbiO cobalt transport 98.1 5.6E-05 1.2E-09 73.2 12.8 144 17-161 32-204 (269)
302 PRK11650 ugpC glycerol-3-phosp 98.1 1.6E-06 3.6E-11 87.0 2.1 137 17-160 27-195 (356)
303 cd03244 ABCC_MRP_domain2 Domai 98.1 3.8E-05 8.3E-10 72.1 11.3 140 17-160 27-198 (221)
304 PRK13652 cbiO cobalt transport 98.1 8.1E-06 1.8E-10 79.4 6.9 143 17-160 27-198 (277)
305 TIGR03411 urea_trans_UrtD urea 98.1 1.2E-05 2.5E-10 76.7 7.7 64 95-160 139-202 (242)
306 cd03264 ABC_drug_resistance_li 98.0 7.8E-06 1.7E-10 76.2 6.4 63 96-160 127-189 (211)
307 PF02562 PhoH: PhoH-like prote 98.0 6.4E-06 1.4E-10 75.1 5.6 135 5-159 4-155 (205)
308 PRK13632 cbiO cobalt transport 98.0 7.7E-06 1.7E-10 79.3 6.5 142 17-161 32-204 (271)
309 PRK11831 putative ABC transpor 98.0 8.3E-06 1.8E-10 79.0 6.7 63 97-160 141-204 (269)
310 cd03245 ABCC_bacteriocin_expor 98.0 9.8E-06 2.1E-10 76.0 7.1 62 98-161 139-200 (220)
311 cd03300 ABC_PotA_N PotA is an 98.0 4E-06 8.8E-11 79.3 4.4 141 17-160 23-191 (232)
312 PRK13545 tagH teichoic acids e 98.0 4.2E-05 9.2E-10 79.2 12.0 137 17-160 47-203 (549)
313 PRK13639 cbiO cobalt transport 98.0 1E-05 2.2E-10 78.7 7.1 141 17-160 25-197 (275)
314 COG3842 PotA ABC-type spermidi 98.0 2.4E-06 5.3E-11 83.9 2.8 142 16-158 27-195 (352)
315 PRK10895 lipopolysaccharide AB 98.0 7.3E-06 1.6E-10 78.0 6.1 143 17-160 26-197 (241)
316 TIGR01184 ntrCD nitrate transp 98.0 1.4E-05 3.1E-10 75.4 8.0 141 17-160 8-175 (230)
317 PRK11614 livF leucine/isoleuci 98.0 4.8E-06 1E-10 79.1 4.7 150 17-169 28-204 (237)
318 PRK15112 antimicrobial peptide 98.0 5.5E-05 1.2E-09 73.2 12.2 70 97-169 147-217 (267)
319 TIGR02982 heterocyst_DevA ABC 98.0 1.2E-05 2.7E-10 75.3 7.5 144 17-161 28-203 (220)
320 PRK14721 flhF flagellar biosyn 98.0 8.9E-05 1.9E-09 75.2 14.0 127 18-167 189-318 (420)
321 PRK13649 cbiO cobalt transport 98.0 6.5E-05 1.4E-09 73.2 12.7 64 96-160 142-205 (280)
322 cd03296 ABC_CysA_sulfate_impor 98.0 1.1E-05 2.4E-10 76.7 7.1 63 97-160 134-197 (239)
323 PRK13638 cbiO cobalt transport 98.0 7.5E-06 1.6E-10 79.4 5.9 64 96-160 133-196 (271)
324 PRK10771 thiQ thiamine transpo 98.0 6.8E-06 1.5E-10 77.8 5.5 147 16-169 21-197 (232)
325 PRK14250 phosphate ABC transpo 98.0 1.9E-05 4.1E-10 75.2 8.5 140 17-160 26-192 (241)
326 PRK10790 putative multidrug tr 98.0 2.4E-05 5.1E-10 84.9 10.3 136 17-160 364-535 (592)
327 COG1132 MdlB ABC-type multidru 98.0 8.3E-06 1.8E-10 87.9 6.7 142 17-160 352-524 (567)
328 cd03234 ABCG_White The White s 98.0 2.4E-05 5.1E-10 73.7 9.0 64 96-160 140-203 (226)
329 PF13245 AAA_19: Part of AAA d 98.0 2.2E-05 4.7E-10 59.7 7.1 57 13-69 3-62 (76)
330 PRK10070 glycine betaine trans 98.0 4.6E-05 1E-09 77.4 11.6 138 17-161 51-226 (400)
331 TIGR02324 CP_lyasePhnL phospho 98.0 0.00011 2.3E-09 69.2 13.4 64 96-160 146-209 (224)
332 PRK13651 cobalt transporter AT 98.0 1.2E-05 2.6E-10 79.2 7.1 64 96-160 162-225 (305)
333 PRK11264 putative amino-acid A 98.0 7.4E-06 1.6E-10 78.5 5.6 71 96-169 141-211 (250)
334 COG2274 SunT ABC-type bacterio 98.0 3E-05 6.6E-10 84.0 10.8 138 16-161 495-669 (709)
335 COG0410 LivF ABC-type branched 98.0 1.6E-05 3.5E-10 72.3 7.3 139 17-156 26-193 (237)
336 PRK15056 manganese/iron transp 98.0 7.2E-05 1.6E-09 72.6 12.5 64 96-160 139-202 (272)
337 PRK11248 tauB taurine transpor 98.0 1.8E-05 4E-10 75.9 8.2 148 17-169 24-196 (255)
338 PRK13637 cbiO cobalt transport 98.0 9E-05 2E-09 72.4 13.2 150 17-169 30-212 (287)
339 PRK13636 cbiO cobalt transport 98.0 1.3E-05 2.8E-10 78.2 7.2 150 17-169 29-209 (283)
340 cd03267 ABC_NatA_like Similar 98.0 1E-05 2.2E-10 76.8 6.3 64 96-160 150-214 (236)
341 PRK11160 cysteine/glutathione 98.0 3.7E-05 8.1E-10 82.8 11.4 142 17-160 363-534 (574)
342 PRK09452 potA putrescine/sperm 98.0 5.2E-06 1.1E-10 83.8 4.5 141 17-160 37-205 (375)
343 TIGR00968 3a0106s01 sulfate AB 98.0 4.7E-06 1E-10 79.1 4.0 143 17-160 23-191 (237)
344 TIGR02203 MsbA_lipidA lipid A 98.0 1.4E-05 3.1E-10 86.2 8.1 143 16-160 354-528 (571)
345 PRK13646 cbiO cobalt transport 98.0 8.4E-05 1.8E-09 72.6 12.8 143 17-161 30-207 (286)
346 PRK10789 putative multidrug tr 98.0 1.2E-05 2.7E-10 86.5 7.5 141 17-160 338-510 (569)
347 cd03297 ABC_ModC_molybdenum_tr 98.0 6.5E-06 1.4E-10 76.9 4.7 64 96-160 128-192 (214)
348 TIGR02204 MsbA_rel ABC transpo 98.0 1.3E-05 2.9E-10 86.6 7.7 142 17-160 363-535 (576)
349 cd03236 ABC_RNaseL_inhibitor_d 98.0 7.8E-05 1.7E-09 71.4 12.1 64 96-160 136-199 (255)
350 PRK11144 modC molybdate transp 98.0 5.7E-06 1.2E-10 83.2 4.5 141 17-160 21-189 (352)
351 PRK13642 cbiO cobalt transport 98.0 1.7E-05 3.6E-10 77.2 7.6 142 17-161 30-202 (277)
352 TIGR00972 3a0107s01c2 phosphat 98.0 8.1E-06 1.8E-10 78.1 5.3 63 96-160 141-203 (247)
353 PRK11300 livG leucine/isoleuci 98.0 1.4E-05 3E-10 76.8 6.9 63 97-160 151-214 (255)
354 PRK15079 oligopeptide ABC tran 98.0 1.7E-05 3.6E-10 79.0 7.6 64 97-161 159-223 (331)
355 cd03291 ABCC_CFTR1 The CFTR su 98.0 1.8E-05 3.8E-10 76.9 7.6 142 17-161 60-220 (282)
356 TIGR03873 F420-0_ABC_ATP propo 98.0 1.1E-05 2.4E-10 77.6 6.1 144 17-161 24-198 (256)
357 PRK13641 cbiO cobalt transport 98.0 1.3E-05 2.8E-10 78.4 6.5 142 17-160 30-205 (287)
358 TIGR03415 ABC_choXWV_ATP choli 98.0 2.5E-05 5.4E-10 78.8 8.7 64 97-161 162-226 (382)
359 PRK10575 iron-hydroxamate tran 98.0 1.2E-05 2.7E-10 77.6 6.2 144 17-161 34-209 (265)
360 smart00382 AAA ATPases associa 98.0 7.3E-05 1.6E-09 64.0 10.5 28 20-47 2-29 (148)
361 TIGR03005 ectoine_ehuA ectoine 98.0 6.7E-06 1.5E-10 78.9 4.2 64 97-161 144-208 (252)
362 TIGR00958 3a01208 Conjugate Tr 98.0 1.4E-05 3.1E-10 88.2 7.3 141 17-161 504-675 (711)
363 TIGR01192 chvA glucan exporter 98.0 1.5E-05 3.3E-10 86.0 7.3 142 17-160 358-530 (585)
364 KOG1002 Nucleotide excision re 98.0 0.00023 4.9E-09 71.1 14.6 91 246-351 661-753 (791)
365 PRK06731 flhF flagellar biosyn 98.0 0.00014 3.1E-09 69.6 13.1 126 19-165 74-201 (270)
366 TIGR03797 NHPM_micro_ABC2 NHPM 98.0 4.8E-05 1E-09 83.9 11.4 134 17-160 476-645 (686)
367 PRK13548 hmuV hemin importer A 98.0 1.6E-05 3.6E-10 76.4 6.8 144 16-160 24-201 (258)
368 TIGR01842 type_I_sec_PrtD type 98.0 1.3E-05 2.9E-10 85.8 6.8 143 17-161 341-515 (544)
369 PRK11701 phnK phosphonate C-P 97.9 0.0001 2.2E-09 70.9 12.3 65 95-160 147-212 (258)
370 PRK10619 histidine/lysine/argi 97.9 2.7E-05 5.9E-10 74.9 8.2 71 96-169 149-219 (257)
371 PRK11432 fbpC ferric transport 97.9 6.7E-06 1.5E-10 82.4 4.0 137 17-160 29-197 (351)
372 PRK10938 putative molybdenum t 97.9 2.3E-05 5.1E-10 82.8 8.3 144 16-160 25-195 (490)
373 cd03289 ABCC_CFTR2 The CFTR su 97.9 3E-05 6.6E-10 75.0 8.3 59 100-160 139-197 (275)
374 COG4525 TauB ABC-type taurine 97.9 0.00017 3.7E-09 63.8 12.0 138 16-163 27-196 (259)
375 TIGR02142 modC_ABC molybdenum 97.9 7.4E-06 1.6E-10 82.5 4.2 63 97-160 129-192 (354)
376 cd03299 ABC_ModC_like Archeal 97.9 7.3E-06 1.6E-10 77.7 4.0 137 17-160 22-190 (235)
377 PRK14723 flhF flagellar biosyn 97.9 0.00011 2.4E-09 79.3 13.2 125 19-166 184-311 (767)
378 PRK15439 autoinducer 2 ABC tra 97.9 1.6E-05 3.4E-10 84.4 6.7 143 17-160 34-200 (510)
379 TIGR03258 PhnT 2-aminoethylpho 97.9 6.2E-06 1.3E-10 82.9 3.4 141 17-160 28-199 (362)
380 TIGR03265 PhnT2 putative 2-ami 97.9 6.3E-06 1.4E-10 82.7 3.5 141 17-160 27-195 (353)
381 cd03257 ABC_NikE_OppD_transpor 97.9 5.4E-05 1.2E-09 71.4 9.6 64 96-160 142-206 (228)
382 TIGR02770 nickel_nikD nickel i 97.9 4.1E-05 8.8E-10 72.3 8.7 71 96-169 122-193 (230)
383 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 1.9E-05 4E-10 87.5 7.3 140 17-160 502-672 (710)
384 PRK10253 iron-enterobactin tra 97.9 1.9E-05 4E-10 76.4 6.3 151 16-169 29-211 (265)
385 PRK11022 dppD dipeptide transp 97.9 8.5E-05 1.9E-09 73.8 11.1 62 99-161 153-215 (326)
386 TIGR02323 CP_lyasePhnK phospho 97.9 6.3E-05 1.4E-09 72.2 9.9 64 96-160 145-209 (253)
387 PRK11000 maltose/maltodextrin 97.9 4.2E-05 9.1E-10 77.4 9.0 137 17-160 26-194 (369)
388 PRK10522 multidrug transporter 97.9 8.9E-05 1.9E-09 79.5 12.0 142 17-160 346-510 (547)
389 PRK12727 flagellar biosynthesi 97.9 0.00013 2.7E-09 75.4 12.3 126 17-166 347-475 (559)
390 cd03290 ABCC_SUR1_N The SUR do 97.9 0.00013 2.8E-09 68.4 11.5 65 96-161 137-203 (218)
391 PRK10419 nikE nickel transport 97.9 4.2E-05 9E-10 74.0 8.4 64 96-160 148-212 (268)
392 PRK10418 nikD nickel transport 97.9 6.7E-05 1.4E-09 72.0 9.6 64 96-160 137-201 (254)
393 TIGR01193 bacteriocin_ABC ABC- 97.9 2.7E-05 5.9E-10 86.2 7.8 141 17-161 497-670 (708)
394 COG1101 PhnK ABC-type uncharac 97.9 6.9E-05 1.5E-09 67.3 8.6 153 5-160 13-209 (263)
395 PRK10416 signal recognition pa 97.9 0.00034 7.3E-09 69.0 14.5 127 19-163 113-247 (318)
396 PRK10851 sulfate/thiosulfate t 97.9 1E-05 2.2E-10 81.1 3.6 141 17-160 25-197 (353)
397 TIGR02769 nickel_nikE nickel i 97.9 4.8E-05 1E-09 73.5 8.2 64 96-160 147-211 (265)
398 PRK09984 phosphonate/organopho 97.9 2.1E-05 4.6E-10 75.9 5.7 65 96-161 149-214 (262)
399 COG4618 ArpD ABC-type protease 97.9 7.7E-05 1.7E-09 75.2 9.6 138 16-160 358-532 (580)
400 PRK14247 phosphate ABC transpo 97.9 2.6E-05 5.7E-10 74.7 6.3 63 96-160 143-205 (250)
401 PRK09473 oppD oligopeptide tra 97.8 0.00011 2.5E-09 73.1 10.9 63 98-161 160-223 (330)
402 TIGR01194 cyc_pep_trnsptr cycl 97.8 5.1E-05 1.1E-09 81.4 9.0 143 16-160 364-531 (555)
403 PRK14241 phosphate transporter 97.8 0.00021 4.5E-09 68.8 12.4 63 96-160 145-207 (258)
404 PRK11607 potG putrescine trans 97.8 6.5E-06 1.4E-10 83.2 2.0 141 17-160 42-210 (377)
405 PRK14267 phosphate ABC transpo 97.8 3E-05 6.6E-10 74.4 6.6 62 97-160 147-208 (253)
406 cd03288 ABCC_SUR2 The SUR doma 97.8 6.4E-05 1.4E-09 72.3 8.8 62 98-161 155-216 (257)
407 TIGR01978 sufC FeS assembly AT 97.8 2.9E-05 6.3E-10 74.0 6.4 60 100-160 145-204 (243)
408 PRK14259 phosphate ABC transpo 97.8 9.3E-05 2E-09 71.7 9.9 62 97-160 152-213 (269)
409 PF09848 DUF2075: Uncharacteri 97.8 7.6E-05 1.6E-09 75.2 9.5 94 21-132 2-97 (352)
410 TIGR01846 type_I_sec_HlyB type 97.8 3.1E-05 6.6E-10 85.5 7.2 140 17-160 480-652 (694)
411 CHL00131 ycf16 sulfate ABC tra 97.8 2.4E-05 5.2E-10 75.1 5.5 61 100-161 152-212 (252)
412 PRK14273 phosphate ABC transpo 97.8 2.6E-05 5.7E-10 74.8 5.8 64 96-161 147-210 (254)
413 COG0396 sufC Cysteine desulfur 97.8 5.4E-05 1.2E-09 68.8 7.1 52 114-169 159-210 (251)
414 PRK09700 D-allose transporter 97.8 4.1E-05 8.8E-10 81.4 7.6 64 96-160 142-205 (510)
415 TIGR01447 recD exodeoxyribonuc 97.8 0.00012 2.5E-09 78.2 10.8 136 8-158 148-294 (586)
416 TIGR01448 recD_rel helicase, p 97.8 0.00016 3.4E-09 79.5 12.1 130 4-159 322-452 (720)
417 PRK14251 phosphate ABC transpo 97.8 0.00023 5.1E-09 68.1 12.1 63 96-160 144-206 (251)
418 PRK14262 phosphate ABC transpo 97.8 7.2E-05 1.6E-09 71.6 8.5 70 96-169 143-212 (250)
419 COG4619 ABC-type uncharacteriz 97.8 0.00026 5.6E-09 61.1 10.7 141 16-159 25-193 (223)
420 PRK13645 cbiO cobalt transport 97.8 7.2E-05 1.6E-09 73.3 8.6 64 96-160 147-211 (289)
421 PRK13547 hmuV hemin importer A 97.8 4.8E-05 1E-09 73.6 7.2 64 96-160 142-215 (272)
422 PRK10762 D-ribose transporter 97.8 2.3E-05 4.9E-10 83.1 5.4 151 16-169 26-208 (501)
423 COG1125 OpuBA ABC-type proline 97.8 4.5E-05 9.9E-10 70.2 6.5 144 16-162 23-198 (309)
424 PRK10744 pstB phosphate transp 97.8 3.5E-05 7.7E-10 74.2 6.2 62 97-160 154-215 (260)
425 PRK06526 transposase; Provisio 97.8 0.00016 3.5E-09 68.9 10.6 38 16-54 94-131 (254)
426 PRK14269 phosphate ABC transpo 97.8 0.00026 5.7E-09 67.5 12.2 62 97-160 140-201 (246)
427 PRK11288 araG L-arabinose tran 97.8 0.00026 5.6E-09 75.1 13.1 72 94-168 391-462 (501)
428 PRK10875 recD exonuclease V su 97.8 0.00016 3.5E-09 77.3 11.4 137 8-159 155-301 (615)
429 KOG0057 Mitochondrial Fe/S clu 97.8 6.8E-05 1.5E-09 76.3 8.1 141 17-160 375-546 (591)
430 PRK14275 phosphate ABC transpo 97.8 0.0003 6.4E-09 68.8 12.5 70 96-169 179-248 (286)
431 PF00005 ABC_tran: ABC transpo 97.8 2.4E-05 5.1E-10 67.4 4.2 101 17-127 8-136 (137)
432 COG1123 ATPase components of v 97.8 0.00016 3.5E-09 74.7 10.8 158 17-179 314-506 (539)
433 COG3845 ABC-type uncharacteriz 97.8 0.00026 5.6E-09 71.4 11.8 145 16-161 26-201 (501)
434 PLN03232 ABC transporter C fam 97.8 5E-05 1.1E-09 90.2 8.0 143 16-160 1258-1430(1495)
435 TIGR02760 TraI_TIGR conjugativ 97.8 0.0097 2.1E-07 72.2 27.0 246 3-272 427-685 (1960)
436 PRK09580 sufC cysteine desulfu 97.8 0.00018 3.9E-09 68.8 10.5 61 99-160 145-205 (248)
437 PRK13409 putative ATPase RIL; 97.8 7.8E-05 1.7E-09 80.0 8.7 141 17-160 362-514 (590)
438 COG0653 SecA Preprotein transl 97.8 0.00032 7E-09 75.6 13.2 111 199-341 417-539 (822)
439 PRK10982 galactose/methyl gala 97.8 2.6E-05 5.7E-10 82.4 5.1 143 17-160 21-194 (491)
440 COG4178 ABC-type uncharacteriz 97.8 1.8E-05 3.8E-10 82.7 3.5 137 17-161 416-575 (604)
441 COG0488 Uup ATPase components 97.8 6.5E-05 1.4E-09 78.7 7.8 140 16-159 344-495 (530)
442 PRK13409 putative ATPase RIL; 97.8 0.00025 5.4E-09 76.2 12.4 65 95-161 208-272 (590)
443 PLN03130 ABC transporter C fam 97.8 5.1E-05 1.1E-09 90.4 7.7 143 16-161 1261-1434(1622)
444 PRK04296 thymidine kinase; Pro 97.7 0.00012 2.7E-09 66.7 8.6 109 20-157 2-113 (190)
445 PRK15439 autoinducer 2 ABC tra 97.7 0.00028 6.2E-09 74.9 12.7 65 95-160 399-463 (510)
446 PRK11747 dinG ATP-dependent DN 97.7 0.00029 6.2E-09 77.3 12.9 135 194-343 517-671 (697)
447 PRK14238 phosphate transporter 97.7 5.5E-05 1.2E-09 73.3 6.7 63 96-160 164-226 (271)
448 PRK14237 phosphate transporter 97.7 6.3E-05 1.4E-09 72.8 7.0 62 97-160 161-222 (267)
449 PRK03695 vitamin B12-transport 97.7 4.8E-05 1E-09 72.7 6.1 65 96-161 123-194 (248)
450 PRK12724 flagellar biosynthesi 97.7 0.00048 1E-08 69.4 13.1 122 20-165 223-349 (432)
451 PRK14265 phosphate ABC transpo 97.7 4E-05 8.7E-10 74.4 5.3 69 96-168 158-226 (274)
452 PRK14260 phosphate ABC transpo 97.7 0.00047 1E-08 66.4 12.7 70 96-169 147-216 (259)
453 PRK14236 phosphate transporter 97.7 0.00012 2.7E-09 71.0 8.7 63 96-160 165-227 (272)
454 PRK10982 galactose/methyl gala 97.7 0.00029 6.4E-09 74.5 12.3 72 94-168 386-457 (491)
455 COG4107 PhnK ABC-type phosphon 97.7 0.0015 3.2E-08 56.8 14.0 181 16-202 28-253 (258)
456 PRK11288 araG L-arabinose tran 97.7 3E-05 6.6E-10 82.1 4.8 144 16-160 26-200 (501)
457 PRK15093 antimicrobial peptide 97.7 0.00036 7.9E-09 69.6 12.2 63 97-160 156-219 (330)
458 PRK14268 phosphate ABC transpo 97.7 3.7E-05 7.9E-10 74.0 4.9 63 96-160 151-213 (258)
459 PRK14242 phosphate transporter 97.7 3.9E-05 8.4E-10 73.6 5.1 62 97-160 147-208 (253)
460 PRK06995 flhF flagellar biosyn 97.7 0.00053 1.1E-08 70.8 13.5 126 18-166 254-382 (484)
461 PRK13826 Dtr system oriT relax 97.7 0.0083 1.8E-07 67.9 23.8 124 4-159 380-505 (1102)
462 PRK09700 D-allose transporter 97.7 6.1E-05 1.3E-09 80.0 6.9 65 95-160 405-469 (510)
463 PRK14272 phosphate ABC transpo 97.7 4.5E-05 9.8E-10 73.1 5.3 64 95-160 144-207 (252)
464 TIGR00957 MRP_assoc_pro multi 97.7 7.3E-05 1.6E-09 89.0 8.2 142 17-160 1309-1480(1522)
465 PRK14257 phosphate ABC transpo 97.7 0.00017 3.8E-09 71.7 9.6 64 95-160 221-284 (329)
466 PRK10762 D-ribose transporter 97.7 0.00036 7.8E-09 74.0 12.6 71 95-168 391-461 (501)
467 TIGR02633 xylG D-xylose ABC tr 97.7 0.00045 9.8E-09 73.3 13.4 71 95-168 399-469 (500)
468 PRK14248 phosphate ABC transpo 97.7 8.5E-05 1.8E-09 71.9 7.1 63 96-160 161-223 (268)
469 COG0444 DppD ABC-type dipeptid 97.7 0.00025 5.5E-09 68.1 10.1 59 100-161 154-215 (316)
470 PTZ00265 multidrug resistance 97.7 8.4E-05 1.8E-09 87.7 8.3 60 100-160 1359-1419(1466)
471 PRK14253 phosphate ABC transpo 97.7 0.0001 2.3E-09 70.5 7.6 69 97-169 143-211 (249)
472 PRK14270 phosphate ABC transpo 97.7 5.8E-05 1.3E-09 72.3 5.8 70 96-169 144-213 (251)
473 COG4181 Predicted ABC-type tra 97.7 0.00079 1.7E-08 58.4 11.9 139 17-159 33-206 (228)
474 PRK14249 phosphate ABC transpo 97.7 0.00013 2.9E-09 69.8 8.3 63 96-160 144-206 (251)
475 PTZ00243 ABC transporter; Prov 97.7 7.8E-05 1.7E-09 88.7 7.9 142 17-160 1333-1505(1560)
476 PRK14235 phosphate transporter 97.7 5.6E-05 1.2E-09 73.1 5.6 62 97-160 161-222 (267)
477 PRK14261 phosphate ABC transpo 97.7 7.6E-05 1.6E-09 71.6 6.5 63 96-160 146-208 (253)
478 COG1129 MglA ABC-type sugar tr 97.7 8.7E-05 1.9E-09 76.1 7.1 144 16-161 30-206 (500)
479 TIGR00954 3a01203 Peroxysomal 97.7 0.0003 6.6E-09 76.9 11.8 134 17-161 475-640 (659)
480 PRK14264 phosphate ABC transpo 97.7 0.00062 1.3E-08 67.2 12.8 62 97-160 198-259 (305)
481 KOG1803 DNA helicase [Replicat 97.7 0.00012 2.7E-09 75.0 7.9 61 7-69 187-249 (649)
482 COG3638 ABC-type phosphate/pho 97.7 0.0003 6.6E-09 64.3 9.6 150 16-169 26-215 (258)
483 PRK14263 phosphate ABC transpo 97.7 0.00019 4E-09 69.2 8.8 69 97-169 147-215 (261)
484 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00065 1.4E-08 74.9 14.1 122 4-157 351-474 (744)
485 PRK13549 xylose transporter AT 97.7 5E-05 1.1E-09 80.6 5.3 65 95-160 139-203 (506)
486 PRK14246 phosphate ABC transpo 97.7 0.00058 1.3E-08 65.6 12.1 63 96-160 150-212 (257)
487 PRK07952 DNA replication prote 97.7 0.0012 2.5E-08 62.5 13.8 116 21-171 100-215 (244)
488 PRK10636 putative ABC transpor 97.7 0.00013 2.7E-09 79.5 8.3 139 16-160 334-487 (638)
489 COG4598 HisP ABC-type histidin 97.7 0.00079 1.7E-08 58.8 11.4 141 18-161 30-213 (256)
490 PRK14243 phosphate transporter 97.6 0.00011 2.5E-09 70.8 7.1 70 96-169 148-217 (264)
491 PRK14240 phosphate transporter 97.6 5.6E-05 1.2E-09 72.4 4.9 63 96-160 143-205 (250)
492 PRK14254 phosphate ABC transpo 97.6 0.00015 3.2E-09 70.8 7.7 63 96-160 177-239 (285)
493 PRK14274 phosphate ABC transpo 97.6 7.8E-05 1.7E-09 71.8 5.7 63 96-160 152-214 (259)
494 cd03239 ABC_SMC_head The struc 97.6 0.0004 8.7E-09 62.6 9.9 125 22-160 24-158 (178)
495 PRK14245 phosphate ABC transpo 97.6 0.0008 1.7E-08 64.4 12.7 69 97-169 144-212 (250)
496 PLN03232 ABC transporter C fam 97.6 0.00018 4E-09 85.5 9.9 137 17-160 640-800 (1495)
497 PRK14266 phosphate ABC transpo 97.6 0.00015 3.3E-09 69.4 7.6 63 96-160 143-205 (250)
498 PRK10261 glutathione transport 97.6 9.3E-05 2E-09 80.4 6.8 64 96-160 460-524 (623)
499 TIGR00064 ftsY signal recognit 97.6 0.00087 1.9E-08 64.7 12.7 126 20-164 72-206 (272)
500 PRK10261 glutathione transport 97.6 0.00018 3.8E-09 78.3 8.8 64 96-160 165-229 (623)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-120 Score=908.50 Aligned_cols=508 Identities=55% Similarity=0.909 Sum_probs=493.1
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
..|||++++++|++.++++++++|+|+||||||||+|+++.+.++...+.|.|+||||++|..+|+|++++++..+|..|
T Consensus 48 ~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 48 ESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred ccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 36999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred eEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
||.++|++..+..++|+|+|+|+|+|.++.+|.|++|++||+||||||++.+|.++++|+++++.++ ++|+|+||||+|
T Consensus 128 GY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-~LklIimSATld 206 (674)
T KOG0922|consen 128 GYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP-DLKLIIMSATLD 206 (674)
T ss_pred eeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-CceEEEEeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcC
Q 009842 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD 241 (524)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~ 241 (524)
.++|++||++++++.++||.|||+++|...+..+|+++.+..++++|..+++|+||||++|++|++.+++.|.+..+.+.
T Consensus 207 a~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~ 286 (674)
T KOG0922|consen 207 AEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLP 286 (674)
T ss_pred HHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred CCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeec
Q 009842 242 EGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQIS 321 (524)
Q Consensus 242 ~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s 321 (524)
... +. .+.++||+||.++|.+||+..+.|.+|||+||||||++||||+|.||||+|+.|++.|||..|++.|...|+|
T Consensus 287 ~~~-~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~IS 364 (674)
T KOG0922|consen 287 EDC-PE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPIS 364 (674)
T ss_pred ccC-cc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEech
Confidence 543 22 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHHH
Q 009842 322 KVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDAL 401 (524)
Q Consensus 322 ~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~al 401 (524)
++++.||+|||||++||+|||||++++|+. |++.+.|||+|++|...+|++|++|+++ +..|+|+|||+++++..|+
T Consensus 365 kasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d--~l~F~f~d~P~~~~l~~AL 441 (674)
T KOG0922|consen 365 KASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGIND--PLRFPFIDPPPPEALEEAL 441 (674)
T ss_pred HHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCC--cccCCCCCCCChHHHHHHH
Confidence 999999999999999999999999999977 9999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHcccccCCCCCCH-HhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhH-HHhhccCCC
Q 009842 402 KQLYLIDAIDENGSITS-IGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTE-KKRKHTPLE 479 (524)
Q Consensus 402 ~~L~~~g~l~~~~~lT~-lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~-~~~~~~~~~ 479 (524)
+.|..+||||++|.+|. +|+.|+.+|++|.++|+++.+..++|++|+++|+||||+++.|..|.+.+.+ ++..+.+|.
T Consensus 442 ~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~ 521 (674)
T KOG0922|consen 442 EELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA 521 (674)
T ss_pred HHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc
Confidence 99999999999999999 9999999999999999999999999999999999999999999999887777 888899999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHccCchHHHHHHcCCChHHH
Q 009842 480 LPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQMLVA 519 (524)
Q Consensus 480 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 519 (524)
+.+|||++++++|+.|..++..++||++|+||++..
T Consensus 522 ----~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l 557 (674)
T KOG0922|consen 522 ----NPEGDHLTLLNVYESWKENGTSKKWCKENFINARSL 557 (674)
T ss_pred ----CcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHH
Confidence 889999999999999999999999999999998864
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-118 Score=882.82 Aligned_cols=510 Identities=50% Similarity=0.887 Sum_probs=495.9
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-EEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~-i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
..||||.++++++.+++.+++++|+|.||||||||+||++.+.+++.+++ |.|+||+|++|.++|.|+++++|..+|..
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 37999999999999999999999999999999999999999999987775 99999999999999999999999999999
Q ss_pred EeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
|||.++|+++.+.++.|.|+|+|+|++.++..|.|..|++|||||||||++.+|.+.++++.+.+.+| +++++++|||+
T Consensus 342 VGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp-dLKllIsSAT~ 420 (902)
T KOG0923|consen 342 VGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP-DLKLLISSATM 420 (902)
T ss_pred cceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-cceEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ChHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 009842 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~ 240 (524)
++++|+.||+++|++.++||.|||+++|...+..+|++.++..+++||.+++.|+||||+++.++++.+.+.|.+.+..+
T Consensus 421 DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L 500 (902)
T KOG0923|consen 421 DAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL 500 (902)
T ss_pred CHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeee
Q 009842 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (524)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~ 320 (524)
+... ..+-+.|+|++||.+.|.+||++.++|.+||++||||||+++||++|.||||.|+.|++.|||++|+..+...||
T Consensus 501 Gski-~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 501 GSKI-RELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred cccc-ceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 7654 578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHH
Q 009842 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (524)
Q Consensus 321 s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~a 400 (524)
|++++.||+|||||++||+|||||+...|...+...+.|||+|.+|.+++|.+|++|+.+ +..|+|+|||+.+++..|
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~D--l~~FdFmDpPp~etL~~a 657 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHD--LIHFDFLDPPPTETLLKA 657 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcch--hcccccCCCCChHHHHHH
Confidence 999999999999999999999999999999989999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccC-CcccCCCCchhHHHhhccCCC
Q 009842 401 LKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAE-TTLLPGRSKSTEKKRKHTPLE 479 (524)
Q Consensus 401 l~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~-~~f~~~~~~~~~~~~~~~~~~ 479 (524)
+++|+.+||++..|+||.+|+.|+++|+||+++|||+.+-.+.|.+++++|+||+|+. ++|+.|.+...-++++++.|.
T Consensus 658 LE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~ 737 (902)
T KOG0923|consen 658 LEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE 737 (902)
T ss_pred HHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999998 789999988888888888888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHccCchHHHHHHcCCChHHH
Q 009842 480 LPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQMLVA 519 (524)
Q Consensus 480 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 519 (524)
...|||++++++|+.|...+...+||.+|+++++++
T Consensus 738 ----~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm 773 (902)
T KOG0923|consen 738 ----EPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSM 773 (902)
T ss_pred ----CCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHH
Confidence 779999999999999999999999999999999873
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-116 Score=865.95 Aligned_cols=511 Identities=49% Similarity=0.857 Sum_probs=498.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
.||+++.+++++..|..+++++|+|+||||||||+++++++.++...+.|.|+||+|++|+++|++++++++..+|..||
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 59999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~ 162 (524)
|.++|++.++..+.|.|+|.|+|++..+.+..|.+|++||+||||||++++|.+.++++.++..+. ++++|++|||++.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRr-dlKliVtSATm~a 512 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR-DLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc-cceEEEeeccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred HHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCC
Q 009842 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (524)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~ 242 (524)
++|.+|||++|.+.++||.|||++.|...+..+|++.++...+++|...++|++|||.+++++++..+..+.+.+..+..
T Consensus 513 ~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~ 592 (1042)
T KOG0924|consen 513 QKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDS 592 (1042)
T ss_pred HHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred CCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecH
Q 009842 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (524)
Q Consensus 243 ~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~ 322 (524)
....++.|+++|+.||.+-|.++|+..+.|.+|+||||||||+++|||+|.||||+|+.|.++||+..|++.|...|||+
T Consensus 593 ~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 593 APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 54458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHHHH
Q 009842 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (524)
Q Consensus 323 ~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~al~ 402 (524)
+++.||+|||||++||.||||||+..|.+.|.+.++|||+|.+|.+++|.+|++|+++ +..|+|+|||+.+.+..++-
T Consensus 673 AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~d--ll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDD--LLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred ccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhh--hhCCCcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 99999999999999999999
Q ss_pred HHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhHHHhhccCCCCCC
Q 009842 403 QLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPLELPD 482 (524)
Q Consensus 403 ~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 482 (524)
.|..+|||+..|.||++|+.|+++||||.++|||+.|..+||.+|+|+|++|||+...|++|.+..++++.++.+|.
T Consensus 751 ~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~--- 827 (1042)
T KOG0924|consen 751 QLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQ--- 827 (1042)
T ss_pred HHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCchHHHHHHcCCChHHHh
Q 009842 483 GSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQMLVAF 520 (524)
Q Consensus 483 ~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 520 (524)
...|||+|+||+|++|+.++....||.+|+|+++...
T Consensus 828 -~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~ 864 (1042)
T KOG0924|consen 828 -VPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALK 864 (1042)
T ss_pred -CCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHH
Confidence 8999999999999999999999999999999998644
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-110 Score=797.03 Aligned_cols=504 Identities=47% Similarity=0.772 Sum_probs=484.8
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
+||+|++++++++.+.+++.++++|+|||||||++|+++.+......+.+.|+||+|.++.++|+|+++++...+|..||
T Consensus 45 ~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVG 124 (699)
T KOG0925|consen 45 ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG 124 (699)
T ss_pred cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcc
Confidence 69999999999999999999999999999999999999998766666789999999999999999999999999999999
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~ 162 (524)
|.++|+++.+.++-+.|||+|+|++..++++.+..+++||+||||||++.+|.++++++.+...++ ++|+|+||||++.
T Consensus 125 ysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a 203 (699)
T KOG0925|consen 125 YSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA 203 (699)
T ss_pred ccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCC
Q 009842 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (524)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~ 242 (524)
++|+.||+++|++.++| .+|++++|.+.+..+|+++++..++++|..+++|+||||+++.++|+.+++.+......+..
T Consensus 204 ~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~ 282 (699)
T KOG0925|consen 204 EKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGP 282 (699)
T ss_pred HHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999988777664
Q ss_pred CCCCCeEEEEecCCCCHHHHhcccCCCCCC-----ceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccce
Q 009842 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPN-----CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV 317 (524)
Q Consensus 243 ~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-----~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~ 317 (524)
.. ....+.++| +.+|.++|+..+.. .+||+|+||++|+++++++|.+|||.|+.|+++|||+-+.+++..
T Consensus 283 ~~-g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv 357 (699)
T KOG0925|consen 283 QV-GPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLV 357 (699)
T ss_pred cc-CCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeee
Confidence 43 578999999 77888899877643 589999999999999999999999999999999999999999999
Q ss_pred eeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHH
Q 009842 318 VQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESL 397 (524)
Q Consensus 318 ~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i 397 (524)
.|||++++.||+|||||++||+||+||+++.+..+|.+.+.|||+|++|.+++|++|.+|+++ +..|+|+|||.++++
T Consensus 358 ~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~d--lvhfdfmDpPAPEtL 435 (699)
T KOG0925|consen 358 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDD--LVHFDFMDPPAPETL 435 (699)
T ss_pred ccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCccc--ccCCcCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCC-CchhHHHhhcc
Q 009842 398 EDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGR-SKSTEKKRKHT 476 (524)
Q Consensus 398 ~~al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~-~~~~~~~~~~~ 476 (524)
.+|++.|..++|+|++|+||++|..|++||+||++||||+.+++|+|.+|+|+|+||+++.+.|.+|+ +.++.++.+++
T Consensus 436 MrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~ 515 (699)
T KOG0925|consen 436 MRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKE 515 (699)
T ss_pred HHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 66777888999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCchHHHHHHcCCChHHH
Q 009842 477 PLELPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQMLVA 519 (524)
Q Consensus 477 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 519 (524)
.|+ +..|||++++|+|++|+++....+||+.||||++..
T Consensus 516 ~fa----H~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral 554 (699)
T KOG0925|consen 516 TFA----HIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRAL 554 (699)
T ss_pred Hhc----cCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHH
Confidence 999 999999999999999999999999999999999864
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-103 Score=831.98 Aligned_cols=507 Identities=47% Similarity=0.747 Sum_probs=476.0
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
..||+++.+.+|++++.++++++|+|||||||||++|+++++.....++.|.+++|+|++|.++|++++++++..+|..|
T Consensus 47 ~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 47 SGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred ccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 47999999999999999999999999999999999999999998877789999999999999999999999999999999
Q ss_pred eEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
||.+++++..+.+++|.|+|.|+|+++++.++.|+.+++||+||+|||++++|+++++++.++..+++++|+|+||||+|
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988887899999999999
Q ss_pred hHHHhhhcCCCCeeecCCcccceeEEecCCCCcch-HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 009842 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (524)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~ 240 (524)
.+.|++||+++|++.++|+.|||+++|......++ +...+...++++..++.|+||||+|+.++|+.+++.|.+. .+
T Consensus 207 ~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~--~l 284 (845)
T COG1643 207 AERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKA--EL 284 (845)
T ss_pred HHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc--cc
Confidence 99999999999999999999999999988888888 9999999999999999999999999999999999999981 11
Q ss_pred CCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeee
Q 009842 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (524)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~ 320 (524)
. ....+.|+||.|+.++|.++|+..+.|++|||+||||||+|||||+|+||||+|+.|.+.||+.+|+..|...||
T Consensus 285 ~----~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~I 360 (845)
T COG1643 285 G----DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPI 360 (845)
T ss_pred c----CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEe
Confidence 1 368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCC-CcccccccCCCCCCHHHHHH
Q 009842 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLS-DINVLKFDFLDPPSSESLED 399 (524)
Q Consensus 321 s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~i~~ 399 (524)
|++++.||+|||||++||+||+||++++|.. |+.++.|||+|++|++++|+++++|++ + +..|+|+|||+..++..
T Consensus 361 SqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~vL~l~~~G~~~d--~~~f~fld~P~~~~i~~ 437 (845)
T COG1643 361 SKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVLQLKSLGIGQD--IAPFPFLDPPPEAAIQA 437 (845)
T ss_pred chhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHHHHHHhcCCCCC--cccCccCCCCChHHHHH
Confidence 9999999999999999999999999999996 999999999999999999999999995 8 89999999999999999
Q ss_pred HHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCC---cccCCCCchh---HHHh
Q 009842 400 ALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAET---TLLPGRSKST---EKKR 473 (524)
Q Consensus 400 al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~---~f~~~~~~~~---~~~~ 473 (524)
|++.|..+||||.+|.||++|+.|+.||+||++|+|++.+..++|..++++|+|+|++++ .|..+.+... ....
T Consensus 438 A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~ 517 (845)
T COG1643 438 ALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDL 517 (845)
T ss_pred HHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 5777765544 3332
Q ss_pred hc-cCCCCCCCCCCCCHHHHHHHHHHHHccC------chHHHHHHcCCChHH
Q 009842 474 KH-TPLELPDGSGWGDHIQLLQIYECWDECD------YDVNWVKDNGLQMLV 518 (524)
Q Consensus 474 ~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~c~~~~~~~~~ 518 (524)
.+ ..+.. .....+||++++++|..|.... ...+||+.+.++.+.
T Consensus 518 ~~~l~~~~-~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 568 (845)
T COG1643 518 LKRLKRRN-AADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKA 568 (845)
T ss_pred HHHHHhcc-CCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhH
Confidence 22 33330 1236799999999999998865 677899999999775
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3.1e-99 Score=827.33 Aligned_cols=504 Identities=38% Similarity=0.619 Sum_probs=461.8
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
.+|||++++++|++++.++++++|+|+|||||||++|+++........+.|+|++|+|+++.++|++++++++..+|..+
T Consensus 71 ~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 71 ENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 47999999999999999999999999999999999999998876555568999999999999999999999999999999
Q ss_pred eEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
||.+++++..+.+++|+|+|+|+|++.+..++.++++++|||||+|||++++|+++++++.++..++ +.|+|+||||++
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rp-dlKvILmSATid 229 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRP-DLKVIITSATID 229 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCC-CceEEEeeCCCC
Confidence 9999999998889999999999999999999999999999999999999999999999999987776 899999999999
Q ss_pred hHHHhhhcCCCCeeecCCcccceeEEecCCCC------cchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 009842 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERP------TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (524)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~ 235 (524)
.+.|+++|+++|++.++|+.+|++++|..... .+++...+..+..++ ..+.|++||||||+++|+.+++.|.+
T Consensus 230 ~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 230 PERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999976533 223444444433333 45678999999999999999999987
Q ss_pred HhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcccc
Q 009842 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l 315 (524)
.. .+...+.++||+|++++|.++|+. .|.++||||||++|+|||||+|+||||+|+.|.+.||+.+|+..+
T Consensus 309 ~~-------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 309 LN-------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred cC-------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccC
Confidence 51 124568999999999999999986 478999999999999999999999999999999999999999999
Q ss_pred ceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHH
Q 009842 316 DVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSE 395 (524)
Q Consensus 316 ~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 395 (524)
+..|+|+++|.||+|||||.++|.||+||++++|.. +++++.|||+|++|.+++|+++++|+++ +..|+|++||+.+
T Consensus 380 p~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~d--i~~F~fldpP~~~ 456 (1294)
T PRK11131 380 PIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLGD--IAAFPFVEAPDKR 456 (1294)
T ss_pred CeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCC--cceeeCCCCCCHH
Confidence 999999999999999999999999999999999988 9999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHcccccCC-----CCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhH
Q 009842 396 SLEDALKQLYLIDAIDEN-----GSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTE 470 (524)
Q Consensus 396 ~i~~al~~L~~~g~l~~~-----~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~ 470 (524)
++..|++.|.++||||.+ ++||++|+.|++||+||++||||+.|..++|++++++|+|+||++++|..|.+.+.+
T Consensus 457 ~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~ 536 (1294)
T PRK11131 457 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQA 536 (1294)
T ss_pred HHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHH
Confidence 999999999999999864 579999999999999999999999999999999999999999999999999988888
Q ss_pred HHhhccCCCCCCCCCCCCHHHHHHHHHHHHcc------CchHHHHHHcCCChHH-Hhhhh
Q 009842 471 KKRKHTPLELPDGSGWGDHIQLLQIYECWDEC------DYDVNWVKDNGLQMLV-AFWRT 523 (524)
Q Consensus 471 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~c~~~~~~~~~-~~~~~ 523 (524)
++.++.+|. +..|||++++|+|+.|.+. +..++||++|+||+.. .+|++
T Consensus 537 a~~~~~~f~----~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~ 592 (1294)
T PRK11131 537 SDEKHRRFA----DKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQD 592 (1294)
T ss_pred HHHHHHhhC----CCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHH
Confidence 888999998 8899999999999999752 2235799999999984 78864
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-97 Score=816.51 Aligned_cols=503 Identities=40% Similarity=0.654 Sum_probs=462.7
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
.+|||++++++|++++.++++++|+|+|||||||++|+++.+......+.|++++|+|++|.++++++++++|..+|..|
T Consensus 64 ~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~V 143 (1283)
T TIGR01967 64 DNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKV 143 (1283)
T ss_pred CCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEE
Confidence 47999999999999999999999999999999999999999876655668999999999999999999999999999999
Q ss_pred eEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
||.+++++..+.+++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+++++++.++..++ ++|+|+||||++
T Consensus 144 GY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-dLKlIlmSATld 222 (1283)
T TIGR01967 144 GYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-DLKIIITSATID 222 (1283)
T ss_pred eeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-CCeEEEEeCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999988887 999999999999
Q ss_pred hHHHhhhcCCCCeeecCCcccceeEEecCCCC------cchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 009842 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERP------TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (524)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~ 235 (524)
.+.|++||+++|++.++|+.+|++++|..... .++....+..+..+. ...+|++|||+||+.+|+.+++.|.+
T Consensus 223 ~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~-~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 223 PERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF-AEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred HHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHH-hhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999975432 123344444443333 34669999999999999999999986
Q ss_pred HhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcccc
Q 009842 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l 315 (524)
.. ..++.+.++||+|++++|.++|+.+ +.++||||||++|+|||||+|+||||+|++|.+.||+.+|+..+
T Consensus 302 ~~-------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 302 RN-------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred cC-------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 52 1257899999999999999999875 35899999999999999999999999999999999999999999
Q ss_pred ceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHH
Q 009842 316 DVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSE 395 (524)
Q Consensus 316 ~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 395 (524)
...|+|+++|.||+|||||.++|.||+||++++|.. +++++.|||+|++|.+++|+++++|+.+ +..|+|++||+.+
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~d--i~~f~fldpP~~~ 449 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGD--IAAFPFIEAPDPR 449 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCC--cccccCCCCCCHH
Confidence 999999999999999999999999999999999988 9999999999999999999999999988 8999999999999
Q ss_pred HHHHHHHHHHHcccccCCC---CCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhHHH
Q 009842 396 SLEDALKQLYLIDAIDENG---SITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKK 472 (524)
Q Consensus 396 ~i~~al~~L~~~g~l~~~~---~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~ 472 (524)
++..|++.|..+||||++| +||++|+.|+.||++|++||||+.|..++|++++++|+|+|+++++|..|.+.+..++
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~ 529 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAAD 529 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHH
Confidence 9999999999999999998 7999999999999999999999999999999999999999999999999988888888
Q ss_pred hhccCCCCCCCCCCCCHHHHHHHHHHHHcc------CchHHHHHHcCCChHH-Hhhh
Q 009842 473 RKHTPLELPDGSGWGDHIQLLQIYECWDEC------DYDVNWVKDNGLQMLV-AFWR 522 (524)
Q Consensus 473 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~c~~~~~~~~~-~~~~ 522 (524)
.++.+|. +..|||++++|+|+.|.+. +..++||++|+||+.. .+|+
T Consensus 530 ~~~~~f~----~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~ 582 (1283)
T TIGR01967 530 QAHARFK----DPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQ 582 (1283)
T ss_pred HHHHHhc----CCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHH
Confidence 8999998 7889999999999999752 2236899999999974 7776
No 8
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3.2e-97 Score=781.00 Aligned_cols=510 Identities=39% Similarity=0.647 Sum_probs=462.1
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC--CCcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009842 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT--KSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~--~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~ 79 (524)
.+||+|+++++|++++.++++++|+|+|||||||++|+++++.... ....|+|+||||..|+++|++++++.+...|.
T Consensus 170 ~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 170 ESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 4799999999999999999999999999999999999999986432 34489999999999999999999999999999
Q ss_pred eEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 80 ~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
.|||.++.++..+..+.+.|||.|.|++.+..++.+.++++||+||+|||++++|+++-+++.++..+| ++|+|+||||
T Consensus 250 ~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p-~LkvILMSAT 328 (924)
T KOG0920|consen 250 EVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP-DLKVILMSAT 328 (924)
T ss_pred eeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC-CceEEEeeee
Confidence 999999999999988999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CChHHHhhhcCCCCeeecCCcccceeEEecCCCC----------cch---------------------HHHHHHHHHHHH
Q 009842 160 LDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERP----------TSY---------------------LESALKTAIDIH 208 (524)
Q Consensus 160 l~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~----------~~~---------------------~~~~~~~~~~~~ 208 (524)
++.+.|+.||+++|++.++|+.||+..+|.++.. ..+ .+-....+..++
T Consensus 329 ~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~ 408 (924)
T KOG0920|consen 329 LDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYID 408 (924)
T ss_pred cchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcc
Confidence 9999999999999999999999999988764310 000 111222333445
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccC
Q 009842 209 VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (524)
Q Consensus 209 ~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gid 288 (524)
.....|.||||+||.+++..+++.|........ ..++.+.++||.|+.++|+.||...+.|.+|||+||||||+|||
T Consensus 409 ~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~---~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSIT 485 (924)
T KOG0920|consen 409 EREFEGAILVFLPGWEEILQLKELLEVNLPFAD---SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSIT 485 (924)
T ss_pred cCCCCceEEEEcCCHHHHHHHHHHhhhcccccc---ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhccc
Confidence 556689999999999999999999987532211 13688999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchh
Q 009842 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAG 368 (524)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~ 368 (524)
||||.||||+|+.|++.||+..++..+...|+|++++.||+|||||.++|.||+||++..|+..+..++.|||+|.+|.+
T Consensus 486 IdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~ 565 (924)
T KOG0920|consen 486 IDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEE 565 (924)
T ss_pred ccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999955559999999999999
Q ss_pred HHHHHHhcCCCCcccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHH
Q 009842 369 SVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQA 448 (524)
Q Consensus 369 ~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~ 448 (524)
++|++|.++..+........++||+.+++..|+..|.++||++.+++||+||++++.||+||++||+++.|..|+|++++
T Consensus 566 l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~ 645 (924)
T KOG0920|consen 566 LCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPA 645 (924)
T ss_pred hhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchh
Confidence 99999999988733233367899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcccCCCCchhHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHc---c--CchHHHHHHcCCChHH
Q 009842 449 LTVAAMLSAETTLLPGRSKSTEKKRKHTPLELPDGSGWGDHIQLLQIYECWDE---C--DYDVNWVKDNGLQMLV 518 (524)
Q Consensus 449 l~i~a~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~--~~~~~~c~~~~~~~~~ 518 (524)
++|||+++.++||..|.++++++++.+..|.. +..|||++++++|+.|+. . +...+||++|+|+..+
T Consensus 646 l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~---~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~ 717 (924)
T KOG0920|consen 646 LTIAAALSFKSPFVSPLGKREEADKAKKLLAL---DSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNT 717 (924)
T ss_pred hhHHHHhccCCCcccCCCchhHHHHHHHHhcc---CCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHH
Confidence 99999999999999999999999988888872 336999999999999987 2 3567899999999876
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-94 Score=724.46 Aligned_cols=510 Identities=42% Similarity=0.709 Sum_probs=466.8
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC-----CcEEEEcccchhHHHHHHHHHHHHhCCcc
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-----SGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~-----~~~i~~~~P~r~la~~~~~~~~~~~~~~~ 77 (524)
.|||.+..++|+++|..|.+++|+|.||||||||+|+++++.++.. ++.|.+++|+|++|..+|+|++.+++. .
T Consensus 254 ~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~ 332 (1172)
T KOG0926|consen 254 DLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-L 332 (1172)
T ss_pred cCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-C
Confidence 6999999999999999999999999999999999999999987643 468999999999999999999999998 8
Q ss_pred cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc---------
Q 009842 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--------- 148 (524)
Q Consensus 78 ~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~--------- 148 (524)
+..|||.++++......+.|.|+|.|+|++.+.++..|.+|++||+||||||++++|.+.++|.++...+.
T Consensus 333 ~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 333 GSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred ccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cCcEEEEEeccCChHHHh---hhcCC-CCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 009842 149 SKLKILITSATLDGEKVS---KFFSN-CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (524)
Q Consensus 149 ~~~~ii~~SATl~~~~~~---~~~~~-~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~ 224 (524)
..+++|+||||+-.++|. .+|.. +|++.++.|.|||.+||......+|+.+++...+.||.+-++|.||||++|+.
T Consensus 413 kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 413 KPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred CceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChH
Confidence 268999999999777665 45543 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh----------------cC-----------------------------------------------
Q 009842 225 DIEKLVSKLEDKIRS----------------LD----------------------------------------------- 241 (524)
Q Consensus 225 ~~~~~~~~L~~~~~~----------------~~----------------------------------------------- 241 (524)
++..+++.|++.++. +.
T Consensus 493 EV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~ 572 (1172)
T KOG0926|consen 493 EVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALA 572 (1172)
T ss_pred HHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccc
Confidence 999999999987320 00
Q ss_pred --------------------------CCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEE
Q 009842 242 --------------------------EGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 242 --------------------------~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~V 295 (524)
...+..+.|+|+||-|+.+.|.+||+..++|.+-+|||||+||+++|||+|+||
T Consensus 573 De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYV 652 (1172)
T KOG0926|consen 573 DENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYV 652 (1172)
T ss_pred cccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEE
Confidence 013346789999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHh
Q 009842 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKS 375 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~ 375 (524)
||||..|.+.||..+|+..+...|+|++++-||+|||||.+||+|||||+...|++.|.++..|||++.+.++++|++|+
T Consensus 653 VD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs 732 (1172)
T KOG0926|consen 653 VDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS 732 (1172)
T ss_pred EeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCCcccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHh
Q 009842 376 LDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAML 455 (524)
Q Consensus 376 ~~~~~~~~~~~~~~~~p~~~~i~~al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~ 455 (524)
+++++ +..|+|.+||+..+++.|...|..+||||.+|.||++|+.||.+|+.|+++|||+.+-+.+|+.-.+.++++|
T Consensus 733 MnI~k--VvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaL 810 (1172)
T KOG0926|consen 733 MNIDK--VVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSAL 810 (1172)
T ss_pred cCccc--eecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCc----------hhH----------------------HHhhccCCCCCCCCCCCCHHHHHHHHHHHHccC
Q 009842 456 SAETTLLPGRSK----------STE----------------------KKRKHTPLELPDGSGWGDHIQLLQIYECWDECD 503 (524)
Q Consensus 456 ~~~~~f~~~~~~----------~~~----------------------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 503 (524)
|+..+|...... .++ ...++.+|. ...||.++++.+..++...+
T Consensus 811 sv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~----~l~sd~l~Ll~Av~a~ey~~ 886 (1172)
T KOG0926|consen 811 SVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS----NLDSDALVLLSAVSAAEYAE 886 (1172)
T ss_pred hccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc----cCCccHHHHHHHHHHHHhhh
Confidence 998877532110 111 012345566 44589999999999998877
Q ss_pred chHHHHHHcCCChHHH
Q 009842 504 YDVNWVKDNGLQMLVA 519 (524)
Q Consensus 504 ~~~~~c~~~~~~~~~~ 519 (524)
+..+||++|||..+.+
T Consensus 887 ~~~rfc~~ngLr~Kam 902 (1172)
T KOG0926|consen 887 NGMRFCEANGLRLKAM 902 (1172)
T ss_pred hcchhHHhcchHHHHH
Confidence 7788999999998764
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.7e-88 Score=725.50 Aligned_cols=448 Identities=36% Similarity=0.569 Sum_probs=414.6
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
|||++++++|++++.++++++++|+|||||||++|+++..... .+++++|++|+|++|.+++++++++++..++..+||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 8999999999999999999999999999999999999887653 356899999999999999999999999999999999
Q ss_pred EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChH
Q 009842 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (524)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~ 163 (524)
.+++++..+.+++|+|+|+|+|++.+..++.++++++|||||+|||++++|+.+.+++.+....+.+.|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999888888999999999999999989999999999999999999999998888888876555589999999999999
Q ss_pred HHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCC
Q 009842 164 KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG 243 (524)
Q Consensus 164 ~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~ 243 (524)
.+.+||++++++.++|+.+|++.+|......+++...+...+........|++||||||+++++.+++.|.+...
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 999999999999999999999999987665555544443333333344578999999999999999999987521
Q ss_pred CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHH
Q 009842 244 SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (524)
Q Consensus 244 ~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~ 323 (524)
.++.+.++||+|++++|.++++.|++|.++||||||++|+|||||+|++|||+|++|...||+.+|++.+.+.|||++
T Consensus 235 --~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 235 --SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred --CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 268899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHHHHH
Q 009842 324 QANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQ 403 (524)
Q Consensus 324 ~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~al~~ 403 (524)
+|.||+|||||.++|.||+||+++++.. |.+++.|||++.+|.+++|+++.+|+.+ ...|+|++||+.+++..|++.
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~--~~~~~~l~~P~~~~i~~a~~~ 389 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKD--PSDLRWLDAPPSVALAAARQL 389 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCC--hhhCCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999987 9999999999999999999999999988 788999999999999999999
Q ss_pred HHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCccc
Q 009842 404 LYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLL 462 (524)
Q Consensus 404 L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~ 462 (524)
|..+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|||+|++++++.
T Consensus 390 L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~ 448 (819)
T TIGR01970 390 LQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPR 448 (819)
T ss_pred HHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998653
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9e-86 Score=712.12 Aligned_cols=447 Identities=34% Similarity=0.555 Sum_probs=412.2
Q ss_pred CCCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 1 ~~~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
|++|||++++++|++++.++++++++|||||||||++|+.+++.... +++++|++|||++|.|++++++++++..++..
T Consensus 1 ~~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 1 MSSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 78999999999999999999999999999999999999988865433 35899999999999999999999999999999
Q ss_pred EeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+||.+++++..+.+++|+|+|+|++++.+..++.++++++||+||+|||++++|+.+++++.++...+.++|+|+||||+
T Consensus 80 VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 80 VGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 99999999888888999999999999999989999999999999999999999999988888877655589999999999
Q ss_pred ChHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 009842 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~ 240 (524)
+.+.+++||++++++.++|+.+|++.+|......+++...+...+........|++||||||+++++.+++.|.+...
T Consensus 160 ~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-- 237 (812)
T PRK11664 160 DNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA-- 237 (812)
T ss_pred CHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999987766666655544444444445579999999999999999999987421
Q ss_pred CCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeee
Q 009842 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (524)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~ 320 (524)
.++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|++|...||+.+|++.+.+.||
T Consensus 238 -----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 238 -----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred -----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 267899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHH
Q 009842 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (524)
Q Consensus 321 s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~a 400 (524)
|+++|.||+|||||.++|.||+||+++++.. +.+++.|||++++|++++|.++++|+.+ +..|+|+|||+..++..|
T Consensus 313 Skasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~--~~~~~~ld~P~~~~~~~A 389 (812)
T PRK11664 313 SQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHD--PAQLSWLDQPPAAALAAA 389 (812)
T ss_pred chhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCC--HHhCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999987 9999999999999999999999999988 788999999999999999
Q ss_pred HHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHH--HHHHHHHHhccC
Q 009842 401 LKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLS--QALTVAAMLSAE 458 (524)
Q Consensus 401 l~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~--~~l~i~a~~~~~ 458 (524)
++.|..+||||++|+||++|+.|++||++|++|+||+.|..++|.. .++.++|+++..
T Consensus 390 ~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 390 KRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999998764 677788888765
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2e-59 Score=494.58 Aligned_cols=391 Identities=21% Similarity=0.322 Sum_probs=306.3
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC--------------CCCCcEEEEcccchhHHHHHHHHHHHHhC
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG--------------YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~--------------~~~~~~i~~~~P~r~la~~~~~~~~~~~~ 74 (524)
.|+++++.+.+|+++++.|+||||||+++|+++.... ...+..+++++||++++.|++.++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 4668888999999999999999999999998886420 11345899999999999999999987776
Q ss_pred CcccceEeEEeeccccc-------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 75 VRLGEEVGYAIRFEDRT-------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 75 ~~~~~~vg~~~~~~~~~-------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
......+...+++.... ....+++++|++. ..+.++++++||+|||||++..+|.++.+++.+...
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~- 320 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK- 320 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh-
Confidence 43211111222332221 1245788999763 234688999999999999999999988887765432
Q ss_pred ccCcEEEEEeccCCh--HHHhhhcCCCCeeecCCcc-cceeEEecCCCC-----cchHHHHHHHHHHHHh---cCCCCCE
Q 009842 148 ASKLKILITSATLDG--EKVSKFFSNCPTLNVPGKL-YPVEILHSKERP-----TSYLESALKTAIDIHV---REPEGDV 216 (524)
Q Consensus 148 ~~~~~ii~~SATl~~--~~~~~~~~~~~~~~i~~~~-~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~g~i 216 (524)
..|+++||||++. +.+++||++++.+.++++. +|++.+|..... .++.......+...+. ...++++
T Consensus 321 --~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 --IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred --cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 3489999999964 4688999999999999985 999998865432 2233332222333322 2345799
Q ss_pred EEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCC-CCCceEEEEecCccccccCCCCeeEE
Q 009842 217 LIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-PPNCRRFIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 217 LVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f-~~g~~~ilvaT~i~e~gidip~v~~V 295 (524)
||||||+++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++||||||+||+|||||+|++|
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~--------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL--------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc--------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 999999999999999998752 2678999999999864 344454 68999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCCCCCcccccC---chhHHHH
Q 009842 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSS---LAGSVLY 372 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~---l~~~~l~ 372 (524)
||+|+++.+. +..|. ..|+|+++|.||+|||||.++|.||+||++++. .| |.+.+ |..++|+
T Consensus 469 ID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L~~~vL~ 533 (675)
T PHA02653 469 YDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFLHNYILY 533 (675)
T ss_pred EECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHHHHHHHH
Confidence 9999877653 33343 458999999999999999999999999999874 13 55555 8999999
Q ss_pred HHhcCCCCcccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHH--hHhhccCCCChHHHHHHHHHhhh
Q 009842 373 LKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSI--GRTMAELPLEPSLSRMLMEANEF 442 (524)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~p~~~~i~~al~~L~~~g~l~~~~~lT~l--G~~~~~lpl~p~~~~~l~~~~~~ 442 (524)
++++|++. ..+.|+|||+.+++..|++.|..+||+|+ ++|.+ |+.++.+ +.||++++|...
T Consensus 534 lk~~g~~~---~~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~ 596 (675)
T PHA02653 534 AKYFNLTL---PEDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGIL 596 (675)
T ss_pred HHHcCCCC---cccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHh
Confidence 99999954 34459999999999999999999998755 89999 9999999 999999988654
No 13
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=2.7e-55 Score=446.59 Aligned_cols=506 Identities=33% Similarity=0.501 Sum_probs=430.6
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc----EEEEcccchhHHHHHHHHHHHHhCCccc
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPRRVAAVSVARRVAQELGVRLG 78 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~----~i~~~~P~r~la~~~~~~~~~~~~~~~~ 78 (524)
+||+..++++|++++..+++++|.|.||+||||++.+++++.-...+. .+.+.+|++..++.++++++++.+..++
T Consensus 376 ~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g 455 (1282)
T KOG0921|consen 376 ELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG 455 (1282)
T ss_pred hCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc
Confidence 699999999999999999999999999999999999999876543322 5778999999999999999999999999
Q ss_pred ceEeEEeecccccC-cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 79 ~~vg~~~~~~~~~~-~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
..+||.+++++..+ ....|.+||-|.+++.+.+ -+..++++|+||.||+..++++++.+++.+....+ ++++++||
T Consensus 456 ~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~-dl~v~lms 532 (1282)
T KOG0921|consen 456 ETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYR-DLRVVLMS 532 (1282)
T ss_pred ccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccch-hhhhhhhh
Confidence 99999999999876 4567889999999998865 46789999999999999999999999999998887 99999999
Q ss_pred ccCChHHHhhhcCCCCeeecCCcccceeEEecCCCC-------------------------cc-------------hHH-
Q 009842 158 ATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERP-------------------------TS-------------YLE- 198 (524)
Q Consensus 158 ATl~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~-------------------------~~-------------~~~- 198 (524)
||+|.+.|..||+.+|.+.+.++.+|+..+|..... .+ +..
T Consensus 533 atIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 533 ATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred cccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 999999999999999999999999998765432100 00 000
Q ss_pred ---------------HHHHH-HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHH
Q 009842 199 ---------------SALKT-AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ 262 (524)
Q Consensus 199 ---------------~~~~~-~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r 262 (524)
...+. +..+....-.|.|+||+|+..++..++.++...-. .+....+.++++|+.++..++
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~---fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE---FGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh---hccchhcccccchhhcccHhh
Confidence 00111 11222334468999999999999999999876521 122246789999999999999
Q ss_pred hcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEE
Q 009842 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYR 342 (524)
Q Consensus 263 ~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~ 342 (524)
.+|++..+.|..|+|++|++++++++|.++.+|||.+..+.+.|.....+....+.|.|+-+..||.||+||.++|.|++
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~ 769 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFH 769 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhhhCcCCCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHhHh
Q 009842 343 LYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRT 422 (524)
Q Consensus 343 l~~~~~~~~~~~~~~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~al~~L~~~g~l~~~~~lT~lG~~ 422 (524)
+.++..|+. +.++..||+.+.++.+..|.+|.+.+.++......-+.||+.+++..+-..|..++++|.++.+|++|+.
T Consensus 770 lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~ 848 (1282)
T KOG0921|consen 770 LCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRM 848 (1282)
T ss_pred ccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhh
Confidence 999999998 9999999999999999999999887776333334678999999999999999999999999999999999
Q ss_pred hccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhHHHh-----hccCCCCCCCCCCCCHHHHHHHHH
Q 009842 423 MAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKR-----KHTPLELPDGSGWGDHIQLLQIYE 497 (524)
Q Consensus 423 ~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~-----~~~~~~~~~~~~~~D~~~~~~~~~ 497 (524)
++.+|+.|..+|+++.+.-++|.+-|+.+|+.++...+|..-......... .+.+|+ ++..+||.+.+..|+
T Consensus 849 la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfs---dhva~~~v~q~~r~~ 925 (1282)
T KOG0921|consen 849 LARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFS---DHVAIVSVIQGYREA 925 (1282)
T ss_pred hhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccc---cchhhhhhhhhhHHH
Confidence 999999999999999999999999999999999988777653322222222 233343 345567777777777
Q ss_pred HHHccCchHHHHHHcCCChHH
Q 009842 498 CWDECDYDVNWVKDNGLQMLV 518 (524)
Q Consensus 498 ~~~~~~~~~~~c~~~~~~~~~ 518 (524)
.|.....+++||..++++..+
T Consensus 926 ~q~ga~~e~efc~r~~l~~~~ 946 (1282)
T KOG0921|consen 926 VQMGAAAEREFCERYSLSNPV 946 (1282)
T ss_pred hhhhhhhhhhHhHhhhhcchh
Confidence 887777788999999999775
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-47 Score=413.42 Aligned_cols=490 Identities=16% Similarity=0.160 Sum_probs=317.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh--CCcccceE
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~--~~~~~~~v 81 (524)
+.++++|.++++.+.+|++++++||||||||.+....+..... .+++++++.|+++++.|+++.+.+.. |..++..+
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 99 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISI 99 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 4578999999999999999999999999999766655554332 25677888899999999999886532 33333333
Q ss_pred eEEeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCC-ChH-HHHHHHHHHHhhcccCcEEEEEec
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSL-NTD-ILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~-~~~-~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
|... .........+|+++||+.+...+..++ .++++++||+||+|+..- ..+ .+..++..+.... .+.|+|++||
T Consensus 100 G~~~-~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-~~~riI~lSA 177 (674)
T PRK01172 100 GDYD-DPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-PDARILALSA 177 (674)
T ss_pred CCCC-CChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-cCCcEEEEeC
Confidence 3111 111112457999999999988876655 589999999999995321 122 2333344333333 4899999999
Q ss_pred cC-ChHHHhhhcCCCCeeecCCcccceeEE--ecCCCCcc-h--HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHH
Q 009842 159 TL-DGEKVSKFFSNCPTLNVPGKLYPVEIL--HSKERPTS-Y--LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (524)
Q Consensus 159 Tl-~~~~~~~~~~~~~~~~i~~~~~~v~~~--~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~ 232 (524)
|+ +.+.+++|++. +.+....++.|++.. +......+ . .......++... ...++++||||+++++++.++..
T Consensus 178 Tl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~~ 255 (674)
T PRK01172 178 TVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET-VNDGGQVLVFVSSRKNAEDYAEM 255 (674)
T ss_pred ccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH-HhCCCcEEEEeccHHHHHHHHHH
Confidence 99 66789999964 344555566666532 21110000 0 000011111111 23568999999999999999999
Q ss_pred HHHHhhhcCCC---------------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEe
Q 009842 233 LEDKIRSLDEG---------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (524)
Q Consensus 233 L~~~~~~~~~~---------------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId 297 (524)
|.......... .+...++.+|||+|++++|..+++.|++|.++|||||+++++|+|+|+..+||+
T Consensus 256 L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~ 335 (674)
T PRK01172 256 LIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR 335 (674)
T ss_pred HHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc
Confidence 98764322110 001235788999999999999999999999999999999999999999887775
Q ss_pred CCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecC-chhhh---hhCcCCCCCcccccCch---
Q 009842 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYP-STVYH---DEFLDVTVPEIQRSSLA--- 367 (524)
Q Consensus 298 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~-~~~~~---~~~~~~~~pei~~~~l~--- 367 (524)
|. ..|+. ....++|..+|.||+|||||.+ .|.++.+.. +++++ +.+.. .|+-..+.|.
T Consensus 336 -~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~--~~~pi~S~l~~~~ 403 (674)
T PRK01172 336 -DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSG--EPEPVISYMGSQR 403 (674)
T ss_pred -Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcC--CCCceeecCCCcc
Confidence 22 22332 2235789999999999999984 677777643 33232 22222 2322222222
Q ss_pred ---hHHHHHHhcCCCC--cccccc---cCC--CCCC---HHHHHHHHHHHHHcccccCCC--CCCHHhHhhccCCCChHH
Q 009842 368 ---GSVLYLKSLDLSD--INVLKF---DFL--DPPS---SESLEDALKQLYLIDAIDENG--SITSIGRTMAELPLEPSL 432 (524)
Q Consensus 368 ---~~~l~~~~~~~~~--~~~~~~---~~~--~~p~---~~~i~~al~~L~~~g~l~~~~--~lT~lG~~~~~lpl~p~~ 432 (524)
..+|.....|.-. .++..| .|+ .+++ .+.++.+++.|.+.|+|+.++ .+|++|+.++.+|++|..
T Consensus 404 ~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t 483 (674)
T PRK01172 404 KVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPES 483 (674)
T ss_pred cHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHH
Confidence 1133444444311 012222 333 3322 567899999999999998654 689999999999999999
Q ss_pred HHHHHHHhhhC-CHHHHHHHHHHhccCCcccCCCCchhH--HHhhccCCCCCCCCCCCCHHHHHHHHHHHHccCchHHHH
Q 009842 433 SRMLMEANEFG-CLSQALTVAAMLSAETTLLPGRSKSTE--KKRKHTPLELPDGSGWGDHIQLLQIYECWDECDYDVNWV 509 (524)
Q Consensus 433 ~~~l~~~~~~~-c~~~~l~i~a~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c 509 (524)
++.+..+.... -...++.+++... .| .|....++ .......... ......++...-+.++|.++......+
T Consensus 484 ~~~~~~~l~~~~~~~~~l~~~~~~~---e~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~ll~~~~~~~~~~~i~ 557 (674)
T PRK01172 484 ALILKSAFDHDYDEDLALYYISLCR---EI-IPANTRDDYYAMEFLEDIGV--IDGDISAAKTAMVLRGWISEASMQKIT 557 (674)
T ss_pred HHHHHHHhhccCCHHHHHHHhhcCc---cc-cccccchHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHcCCCHHHHH
Confidence 99998887654 3445555554333 33 22211111 1111111110 022335677788999999988777788
Q ss_pred HHcCCCh
Q 009842 510 KDNGLQM 516 (524)
Q Consensus 510 ~~~~~~~ 516 (524)
+.+++..
T Consensus 558 ~~~~~~~ 564 (674)
T PRK01172 558 DTYGIAP 564 (674)
T ss_pred HHhCCCh
Confidence 8888774
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-45 Score=402.67 Aligned_cols=492 Identities=18% Similarity=0.194 Sum_probs=319.6
Q ss_pred chHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHH--hCCcccceEe
Q 009842 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE--LGVRLGEEVG 82 (524)
Q Consensus 6 i~~~~~~i~~~-l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~--~~~~~~~~vg 82 (524)
+++.|.+.++. +.+|+++++++|||||||......+..... .+++++++.|+++++.|+++.+.+. +|..++...|
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tG 102 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTG 102 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 56788888876 889999999999999999555444333222 4668999999999999999998753 2444444444
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCh--H-HHHHHHHHHHhhcccCcEEEEEec
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNT--D-ILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~--~-~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
... .........+|+++||+.+..++.+.. +++++++||+||+|. ..+. + .+..++.++....+ +.|+|++||
T Consensus 103 d~~-~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~rg~~le~il~rl~~~~~-~~qii~lSA 179 (737)
T PRK02362 103 DYD-SRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANRGPTLEVTLAKLRRLNP-DLQVVALSA 179 (737)
T ss_pred CcC-ccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcchHHHHHHHHHHHhcCC-CCcEEEEcc
Confidence 211 111122457899999999988876543 789999999999994 3332 2 23333444444333 899999999
Q ss_pred cC-ChHHHhhhcCCCCeeecCCcccceeEE--ecCC----CCcc-----hHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 159 TL-DGEKVSKFFSNCPTLNVPGKLYPVEIL--HSKE----RPTS-----YLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 159 Tl-~~~~~~~~~~~~~~~~i~~~~~~v~~~--~~~~----~~~~-----~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
|+ +.+.+++|++... +....++.++... +... .... ........+.+.. ..++++||||+|++++
T Consensus 180 Tl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~ 256 (737)
T PRK02362 180 TIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNA 256 (737)
T ss_pred cCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHH
Confidence 99 5678999986432 2222233333221 1000 0000 0022233333332 3568999999999999
Q ss_pred HHHHHHHHHHhhhc-------------------CCC-------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec
Q 009842 227 EKLVSKLEDKIRSL-------------------DEG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (524)
Q Consensus 227 ~~~~~~L~~~~~~~-------------------~~~-------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT 280 (524)
+.++..|....... ... .+...++.+|||+|++++|..+++.|++|.++|||||
T Consensus 257 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT 336 (737)
T PRK02362 257 EGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISST 336 (737)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 99999997653210 000 0012468889999999999999999999999999999
Q ss_pred CccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCchh-----hhhh
Q 009842 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTV-----YHDE 352 (524)
Q Consensus 281 ~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~-----~~~~ 352 (524)
+++++|||+|++++||+. ...||+..|. .|+|..+|.||+|||||. ..|.|+.+....+ +..
T Consensus 337 ~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~- 406 (737)
T PRK02362 337 PTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFER- 406 (737)
T ss_pred hhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHH-
Confidence 999999999999999963 3457665433 578999999999999998 3499999986532 222
Q ss_pred CcCCCCCccccc------CchhHHHHHHhcCCCCc--cccc---ccCCCCC------CHHHHHHHHHHHHHcccccCCC-
Q 009842 353 FLDVTVPEIQRS------SLAGSVLYLKSLDLSDI--NVLK---FDFLDPP------SSESLEDALKQLYLIDAIDENG- 414 (524)
Q Consensus 353 ~~~~~~pei~~~------~l~~~~l~~~~~~~~~~--~~~~---~~~~~~p------~~~~i~~al~~L~~~g~l~~~~- 414 (524)
+.. ..|+-..+ .|...++.....|.-.. ++.. ..|+..+ ..+.++.+++.|.+.|+|+.++
T Consensus 407 ~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~ 485 (737)
T PRK02362 407 YIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGE 485 (737)
T ss_pred HHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCC
Confidence 111 12322222 24445555555553220 0111 1232222 3456899999999999998776
Q ss_pred --CCCHHhHhhccCCCChHHHHHHHHHhhhC---CHHHHHHHHHHhccCCcccCCCCchhHHHhh---c-cCC-CCC---
Q 009842 415 --SITSIGRTMAELPLEPSLSRMLMEANEFG---CLSQALTVAAMLSAETTLLPGRSKSTEKKRK---H-TPL-ELP--- 481 (524)
Q Consensus 415 --~lT~lG~~~~~lpl~p~~~~~l~~~~~~~---c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~~---~-~~~-~~~--- 481 (524)
.+|++|++++.++++|..+..+..+.... ....++.++|.....+.+..+.++....... + ..+ ...
T Consensus 486 ~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~ 565 (737)
T PRK02362 486 TLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSE 565 (737)
T ss_pred eEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCch
Confidence 49999999999999999999999887643 3456676666544333332222222221110 0 011 000
Q ss_pred -CCCCCC---CHHHHHHHHHHHHccCchHHHHHHcCCC
Q 009842 482 -DGSGWG---DHIQLLQIYECWDECDYDVNWVKDNGLQ 515 (524)
Q Consensus 482 -~~~~~~---D~~~~~~~~~~~~~~~~~~~~c~~~~~~ 515 (524)
...... -++..+-+.++|.++......+++|++.
T Consensus 566 ~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~ 603 (737)
T PRK02362 566 FEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVG 603 (737)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 000111 2345567889999988888899999883
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.8e-43 Score=381.20 Aligned_cols=492 Identities=16% Similarity=0.128 Sum_probs=307.3
Q ss_pred chHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHH--hCCcccceEe
Q 009842 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE--LGVRLGEEVG 82 (524)
Q Consensus 6 i~~~~~~i~~~-l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~--~~~~~~~~vg 82 (524)
.++.|.+.+.. +.+|+++++++|||||||......+.......+++++++.|+++++.|+++++.+. +|..++...|
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~G 103 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTG 103 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 46778888875 88999999999999999954433333222224668999999999999999888642 3344433333
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC-
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL- 160 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~-~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl- 160 (524)
... .......+.+|+++||+.+..++... .+++++++||+||+|. ..+.+. ...+..++.....+.|+|++|||+
T Consensus 104 d~~-~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~r-g~~le~il~~l~~~~qiI~lSATl~ 180 (720)
T PRK00254 104 DYD-STDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDR-GATLEMILTHMLGRAQILGLSATVG 180 (720)
T ss_pred CCC-CchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccc-hHHHHHHHHhcCcCCcEEEEEccCC
Confidence 211 11112245789999999998877644 3789999999999994 322222 122344444444578999999999
Q ss_pred ChHHHhhhcCCCCeeecCCccccee--EEecC-----CCC-cchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHH
Q 009842 161 DGEKVSKFFSNCPTLNVPGKLYPVE--ILHSK-----ERP-TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (524)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~~~~v~--~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~ 232 (524)
+.+.+++|++... +....++.+.. +++.. ... ..+.......+.+.. ..++++||||+|++.++.++..
T Consensus 181 n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~~~a~~ 257 (720)
T PRK00254 181 NAEELAEWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVFVNTRRSAEKEALE 257 (720)
T ss_pred CHHHHHHHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEEEcChHHHHHHHHH
Confidence 6788999997543 33333444432 11111 111 111122222222222 2467999999999999999888
Q ss_pred HHHHhhhcC----------------CC-------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCC
Q 009842 233 LEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (524)
Q Consensus 233 L~~~~~~~~----------------~~-------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidi 289 (524)
|.+.....- .. .....++.+|||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvni 337 (720)
T PRK00254 258 LAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINL 337 (720)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCC
Confidence 865422100 00 0012358899999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCchh----hhhhCcCCCCCccc
Q 009842 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTV----YHDEFLDVTVPEIQ 362 (524)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~----~~~~~~~~~~pei~ 362 (524)
|++++||... ..|+ ..| ..+++..+|.||+|||||. ..|.++.+.+.++ ++. +. ...|+-.
T Consensus 338 pa~~vVI~~~----~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~-~~-~~~pe~l 405 (720)
T PRK00254 338 PAFRVIIRDT----KRYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMER-YI-FGKPEKL 405 (720)
T ss_pred CceEEEECCc----eEcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHH-HH-hCCchhh
Confidence 9999999532 2333 112 2345678999999999996 4799998886543 222 21 1122222
Q ss_pred cc------CchhHHHHHHhcC-CCCc----ccc--cccCCCCCC----HHHHHHHHHHHHHcccccCC--C--CCCHHhH
Q 009842 363 RS------SLAGSVLYLKSLD-LSDI----NVL--KFDFLDPPS----SESLEDALKQLYLIDAIDEN--G--SITSIGR 421 (524)
Q Consensus 363 ~~------~l~~~~l~~~~~~-~~~~----~~~--~~~~~~~p~----~~~i~~al~~L~~~g~l~~~--~--~lT~lG~ 421 (524)
.. .|...++.....+ +.+. +.. .|-|...|+ .+.++.+++.|.+.|+|+.+ + .+|++|+
T Consensus 406 ~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~ 485 (720)
T PRK00254 406 FSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGI 485 (720)
T ss_pred hccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHH
Confidence 21 1223334433333 2220 011 111222233 34577889999999999643 2 5799999
Q ss_pred hhccCCCChHHHHHHHHHhhh----CCHHHHHHHHHHhccCCcccCCCCchhHHH----hhccCCCCCCCCCC-------
Q 009842 422 TMAELPLEPSLSRMLMEANEF----GCLSQALTVAAMLSAETTLLPGRSKSTEKK----RKHTPLELPDGSGW------- 486 (524)
Q Consensus 422 ~~~~lpl~p~~~~~l~~~~~~----~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~------- 486 (524)
+++.++++|..++.+..+..- .....++.+++....-.......++..... ....++........
T Consensus 486 ~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 565 (720)
T PRK00254 486 RTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKF 565 (720)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHH
Confidence 999999999999999887653 356677777765544322222222211111 00001110000000
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHcCCC
Q 009842 487 GDHIQLLQIYECWDECDYDVNWVKDNGLQ 515 (524)
Q Consensus 487 ~D~~~~~~~~~~~~~~~~~~~~c~~~~~~ 515 (524)
..++..+-+.++|.++......++++++.
T Consensus 566 ~~~~k~~~ll~~~~~~~~~~~~~~~~~~~ 594 (720)
T PRK00254 566 LRAFKTAKVLLDWINEVPEGEIVETYNID 594 (720)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 02455677889999877777777777765
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-42 Score=343.02 Aligned_cols=312 Identities=22% Similarity=0.234 Sum_probs=236.8
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcC------CCCCcEEEEcccchhHHHHHHHHHHHHhCCccc-
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG- 78 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~------~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~- 78 (524)
..|.+-+..+..|++++.+|.|||||| +++|.+..... ...+.+++++.|||++|.|+.+.+.+... ...
T Consensus 116 pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~-~~~~ 194 (519)
T KOG0331|consen 116 PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK-SLRL 194 (519)
T ss_pred hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC-CCCc
Confidence 345567777889999999999999999 77777776553 23356899999999999999887644432 222
Q ss_pred ---ceEeEEe--ecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCc
Q 009842 79 ---EEVGYAI--RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKL 151 (524)
Q Consensus 79 ---~~vg~~~--~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~-~~~~ 151 (524)
...|... .+........+|+++|||++..++.... .+++++++|+|||| ++++.+|-.. ++.++... +.+.
T Consensus 195 ~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~q-I~~Il~~i~~~~r 272 (519)
T KOG0331|consen 195 RSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQ-IRKILSQIPRPDR 272 (519)
T ss_pred cEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHH-HHHHHHhcCCCcc
Confidence 2222111 1122234568999999999999996554 89999999999999 9999997766 67777766 4355
Q ss_pred EEEEEeccCChHH---HhhhcCCCCeeecCCcc-----cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 009842 152 KILITSATLDGEK---VSKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (524)
Q Consensus 152 ~ii~~SATl~~~~---~~~~~~~~~~~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~ 223 (524)
|.++.|||.+.+. ...|+.+...+.+.+.. ..+... .......-....+..++.......++++||||+|+
T Consensus 273 Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qi-ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tk 351 (519)
T KOG0331|consen 273 QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQI-VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETK 351 (519)
T ss_pred cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhh-hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecch
Confidence 8999999998753 34666644444444321 011000 00111111223344444444466788999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccc
Q 009842 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (524)
Q Consensus 224 ~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~ 303 (524)
+.|.+++..|+.. ++.+..+||+.++.+|+.+++.|++|+..||||||+|++|+|||+|++||++++|+
T Consensus 352 r~~~~l~~~l~~~----------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~- 420 (519)
T KOG0331|consen 352 RTCDELARNLRRK----------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN- 420 (519)
T ss_pred hhHHHHHHHHHhc----------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC-
Confidence 9999999999886 68899999999999999999999999999999999999999999999999999877
Q ss_pred eeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 304 ~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+.+.|+||+||+||. +.|.+|.+|+..++..
T Consensus 421 -----------------~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 421 -----------------NVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred -----------------CHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 677999999999997 8899999999888754
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.7e-41 Score=351.18 Aligned_cols=311 Identities=19% Similarity=0.250 Sum_probs=231.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHh----CCcccc
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQEL----GVRLGE 79 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt-~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~----~~~~~~ 79 (524)
.++.|++++..+.+|++++++||||||||+ ++.+++..... ..+..++++.|+++++.|+++.+.... +..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 457899999999999999999999999993 33333333222 224478899999999999998775543 223322
Q ss_pred eEeEEeecc---cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 80 EVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 80 ~vg~~~~~~---~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
..|. .... .......+|+++|||.+...+.... .++++++||+||+| +.++.++... +..++...+.+.++++
T Consensus 107 ~~Gg-~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~-l~~i~~~~~~~~q~ll 183 (460)
T PRK11776 107 LCGG-VPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDA-IDAIIRQAPARRQTLL 183 (460)
T ss_pred EECC-CChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHH-HHHHHHhCCcccEEEE
Confidence 2331 1111 1123567999999999999886544 68999999999999 5666666555 5677777777889999
Q ss_pred EeccCChH--HHh-hhcCCCCeeecCCcc--cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009842 156 TSATLDGE--KVS-KFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 156 ~SATl~~~--~~~-~~~~~~~~~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
+|||++.. .+. .++.++..+.+.... ..++..|......+ ....+..+.....++++||||+++++++.++
T Consensus 184 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 184 FSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred EEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 99999764 333 444444444443321 22333333222222 2333444444456678999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCC
Q 009842 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~ 310 (524)
+.|... ++.+..+||+|++++|+.+++.|++|..+|||||+++++|||+|++++||++|+|.
T Consensus 260 ~~L~~~----------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~-------- 321 (460)
T PRK11776 260 DALNAQ----------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR-------- 321 (460)
T ss_pred HHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC--------
Confidence 999876 78899999999999999999999999999999999999999999999999998766
Q ss_pred CccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 311 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+..+|+||+||+||. +.|.||.|+++++...
T Consensus 322 ----------~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~ 353 (460)
T PRK11776 322 ----------DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQR 353 (460)
T ss_pred ----------CHhHhhhhcccccCCCCcceEEEEEchhHHHH
Confidence 667899999999999 6899999998876543
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-42 Score=320.60 Aligned_cols=310 Identities=21% Similarity=0.232 Sum_probs=234.9
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHH---HHhCCcccceEe
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~~vg 82 (524)
..|.+.+..+..|++++..|.|||||| +++.+++.... ..+.-..+++.|+|++|.|+++.+. +-.|..+...+|
T Consensus 86 ~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvG 165 (476)
T KOG0330|consen 86 KIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVG 165 (476)
T ss_pred hhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEec
Confidence 456677777889999999999999999 55555555443 3334588999999999999988763 223445555555
Q ss_pred EEee--cccccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009842 83 YAIR--FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 83 ~~~~--~~~~~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
.... .......+.+|+++|||.|..++.+.. .+.+++++|+|||| |.++.+|... +..+++..|.+.|.+++||
T Consensus 166 G~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~-ld~ILk~ip~erqt~LfsA 243 (476)
T KOG0330|consen 166 GMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEE-LDYILKVIPRERQTFLFSA 243 (476)
T ss_pred CchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHH-HHHHHHhcCccceEEEEEe
Confidence 2211 112234678999999999999997443 78999999999999 9999999877 7888888888999999999
Q ss_pred cCChH--HHh-hhcCCCCeeecCCcccce---eEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHH
Q 009842 159 TLDGE--KVS-KFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (524)
Q Consensus 159 Tl~~~--~~~-~~~~~~~~~~i~~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~ 232 (524)
|++.+ ++. .-+.++..+.++.....+ ...|...+.. +.+ ..++.+.....++++||||++...++.++-.
T Consensus 244 TMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k-~K~---~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~ 319 (476)
T KOG0330|consen 244 TMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK-DKD---TYLVYLLNELAGNSVIVFCNTCNTTRFLALL 319 (476)
T ss_pred ecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccc-ccc---hhHHHHHHhhcCCcEEEEEeccchHHHHHHH
Confidence 99754 333 223333334433322211 1222221111 111 1233334445568999999999999999999
Q ss_pred HHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCc
Q 009842 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (524)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~ 312 (524)
|+.. ++...++||.|+++.|...++.|++|.+.|+||||++++|+|||.|++||||++|.
T Consensus 320 L~~l----------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~---------- 379 (476)
T KOG0330|consen 320 LRNL----------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT---------- 379 (476)
T ss_pred HHhc----------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC----------
Confidence 9886 89999999999999999999999999999999999999999999999999999876
Q ss_pred cccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 313 ~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+...|+||+||+||. .+|+++.|.+..+.+.
T Consensus 380 --------~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 380 --------HSKDYIHRVGRTARAGRSGKAITLVTQYDVEL 411 (476)
T ss_pred --------cHHHHHHHcccccccCCCcceEEEEehhhhHH
Confidence 455899999999999 7999999998855543
No 20
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1e-40 Score=357.15 Aligned_cols=496 Identities=19% Similarity=0.206 Sum_probs=314.8
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH--HHhCCcccceEeEEe
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEVGYAI 85 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~--~~~~~~~~~~vg~~~ 85 (524)
++|.++-..+.+++|++|++|||||||.++...+.......++++++++|+++++.+.++++. +.+|.+++...|. .
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD-~ 113 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGD-Y 113 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCC-c
Confidence 456666666677899999999999999777767666555456799999999999999999998 7788888877772 2
Q ss_pred ecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCC-hH-HHHHHHHHHHhhcccCcEEEEEeccC-C
Q 009842 86 RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TD-ILLGLVKRLVNLRASKLKILITSATL-D 161 (524)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~-~~-~~~~~l~~i~~~~~~~~~ii~~SATl-~ 161 (524)
......-.+++|+|+|++.+...+++.+ ++.++++|||||+|..+-+ .+ .+..++.+.....+ ..|++++|||+ |
T Consensus 114 ~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~-~~rivgLSATlpN 192 (766)
T COG1204 114 DLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE-LIRIVGLSATLPN 192 (766)
T ss_pred ccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-ceEEEEEeeecCC
Confidence 2222234678999999999999888776 8999999999999953322 22 34444555555444 68999999999 5
Q ss_pred hHHHhhhcCCCCeeecCCcc--------cceeEEecCCCCc----chHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Q 009842 162 GEKVSKFFSNCPTLNVPGKL--------YPVEILHSKERPT----SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (524)
Q Consensus 162 ~~~~~~~~~~~~~~~i~~~~--------~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~ 229 (524)
.+++++|++..++ ....++ +............ ..-......+... ...+|++||||++++.+...
T Consensus 193 ~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~--~~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 193 AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLES--LAEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHH--HhcCCeEEEEEecCchHHHH
Confidence 6899999976655 212211 1112222211111 1112222333332 25678999999999999999
Q ss_pred HHHHHHHhhhcCC-----------C----------------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc
Q 009842 230 VSKLEDKIRSLDE-----------G----------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (524)
Q Consensus 230 ~~~L~~~~~~~~~-----------~----------------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i 282 (524)
++.|......... . .+....+.+||+||+.++|..+++.|++|.++||+||++
T Consensus 270 A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpT 349 (766)
T COG1204 270 AKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPT 349 (766)
T ss_pred HHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechH
Confidence 9999853221000 0 111235788999999999999999999999999999999
Q ss_pred cccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEec-Cchhhhh--hCcCC
Q 009842 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLY-PSTVYHD--EFLDV 356 (524)
Q Consensus 283 ~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~-~~~~~~~--~~~~~ 356 (524)
++.|+|.|+-++||- ...+|++..| ...++..+++|++|||||. .-|..+.+. +.++.+. .....
T Consensus 350 LA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~ 420 (766)
T COG1204 350 LAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQ 420 (766)
T ss_pred HhhhcCCcceEEEEe----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhc
Confidence 999999998777773 2567887444 3578999999999999998 345555554 2222211 12334
Q ss_pred CCCcccccCch------hHHHHHHhcCCCC--cccccc---cCCC------CCCHHHHHHHHHHHHHcc-cccCCC---C
Q 009842 357 TVPEIQRSSLA------GSVLYLKSLDLSD--INVLKF---DFLD------PPSSESLEDALKQLYLID-AIDENG---S 415 (524)
Q Consensus 357 ~~pei~~~~l~------~~~l~~~~~~~~~--~~~~~~---~~~~------~p~~~~i~~al~~L~~~g-~l~~~~---~ 415 (524)
..||...+.|. ..++.+.+.+-.- .....| -|.. --....+..++..|.+.+ .++... .
T Consensus 421 ~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ 500 (766)
T COG1204 421 SEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALH 500 (766)
T ss_pred cCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccc
Confidence 44544222211 1111111111000 000000 0001 124456788999999986 555433 6
Q ss_pred CCHHhHhhccCCCChHHHHHHHHHhhhC----CHHHHHHHHHHhccCCcccCCCCchhH--HHhhccCCCCC----CCC-
Q 009842 416 ITSIGRTMAELPLEPSLSRMLMEANEFG----CLSQALTVAAMLSAETTLLPGRSKSTE--KKRKHTPLELP----DGS- 484 (524)
Q Consensus 416 lT~lG~~~~~lpl~p~~~~~l~~~~~~~----c~~~~l~i~a~~~~~~~f~~~~~~~~~--~~~~~~~~~~~----~~~- 484 (524)
.|++|+.++.++++|..++.+......- +...++..++..+...+.......+.+ .+......... ...
T Consensus 501 ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (766)
T COG1204 501 ATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDEL 580 (766)
T ss_pred hhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHHHhcchHHhhcccccc
Confidence 8999999999999999999988876532 344445555544443332211111111 11110000000 000
Q ss_pred --CC---CCHHHHHHHHHHHHccCchHHHHHHcCCChH
Q 009842 485 --GW---GDHIQLLQIYECWDECDYDVNWVKDNGLQML 517 (524)
Q Consensus 485 --~~---~D~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 517 (524)
.. .-.......+..|..+......++++++-..
T Consensus 581 ~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~ 618 (766)
T COG1204 581 AVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPG 618 (766)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchh
Confidence 00 0112244566789988888889998887643
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.7e-40 Score=347.25 Aligned_cols=313 Identities=21% Similarity=0.239 Sum_probs=223.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcC-----CCCCcEEEEcccchhHHHHHHHHHHHHhC---C
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~-----~~~~~~i~~~~P~r~la~~~~~~~~~~~~---~ 75 (524)
.+..|.+.+..+.+|++++++|||||||| .++|.+..... ...+..++++.|+++++.|+.+.+.+... .
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 35678888999999999999999999999 34555544221 12356899999999999999887754432 2
Q ss_pred cccceEeEEeec--ccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009842 76 RLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 76 ~~~~~vg~~~~~--~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (524)
......|..... ........+|+++|||+|.+.+.... .+.++++||+|||| +.++.++... ++.++...+.+.|
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~-i~~il~~~~~~~q 310 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVSQIRPDRQ 310 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHH-HHHHHHhCCCCCe
Confidence 221122211000 01112457899999999999886554 78999999999999 6777776655 5556655555899
Q ss_pred EEEEeccCChH--HHh-hhcCCCCe-eecCCcc----cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 009842 153 ILITSATLDGE--KVS-KFFSNCPT-LNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (524)
Q Consensus 153 ii~~SATl~~~--~~~-~~~~~~~~-~~i~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~ 224 (524)
++++|||++.+ .+. .++...++ +.+.... ..+...+..... ......+..++.... ...+++||||++++
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRGKLKMLLQRIM-RDGDKILIFVETKK 388 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHHHHHHHHHHhc-ccCCeEEEEecChH
Confidence 99999999764 233 34433333 2221110 111111111111 111122222222221 25679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccce
Q 009842 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (524)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~ 304 (524)
+++.+++.|... ++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||++++|+
T Consensus 389 ~a~~l~~~L~~~----------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~-- 456 (545)
T PTZ00110 389 GADFLTKELRLD----------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN-- 456 (545)
T ss_pred HHHHHHHHHHHc----------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC--
Confidence 999999999764 67788999999999999999999999999999999999999999999999988766
Q ss_pred eecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 305 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
+..+|+||+||+||. ..|.||.++++++..
T Consensus 457 ----------------s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 457 ----------------QIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred ----------------CHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 677999999999999 789999999987654
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.6e-40 Score=339.25 Aligned_cols=309 Identities=18% Similarity=0.189 Sum_probs=222.6
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc---CC-----CCCcEEEEcccchhHHHHHHHHHHHH---hC
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH---GY-----TKSGIIGVTQPRRVAAVSVARRVAQE---LG 74 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~---~~-----~~~~~i~~~~P~r~la~~~~~~~~~~---~~ 74 (524)
.+.|.+.+..+.+|++++++|||||||| +++.+++... .. ..+.+++++.|+++++.|+++.+... .+
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 111 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG 111 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCC
Confidence 4678888999999999999999999999 3333332211 11 12458999999999999998765433 33
Q ss_pred CcccceEeEEeecc---cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-
Q 009842 75 VRLGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (524)
Q Consensus 75 ~~~~~~vg~~~~~~---~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~- 149 (524)
..++..+|. ...+ .....+.+|+++|||.+.+.+.... .+.+++++|+|||| +.++.++... ++.++...+.
T Consensus 112 ~~v~~~~gg-~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~-i~~i~~~~~~~ 188 (423)
T PRK04837 112 LKLGLAYGG-DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKD-IRWLFRRMPPA 188 (423)
T ss_pred ceEEEEECC-CCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHH-HHHHHHhCCCc
Confidence 433333331 1111 1123457899999999998886544 78999999999999 5666665554 4555555542
Q ss_pred -CcEEEEEeccCChHH---HhhhcCCCCeeecCCccc---ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCc
Q 009842 150 -KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (524)
Q Consensus 150 -~~~ii~~SATl~~~~---~~~~~~~~~~~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~ 222 (524)
..+.+++|||++... ...++.++..+.+..... .+...+.... .......+..+......+++||||++
T Consensus 189 ~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t 264 (423)
T PRK04837 189 NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANT 264 (423)
T ss_pred cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 456789999997643 334555554444432211 1111111111 12223334444444556799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccc
Q 009842 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (524)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k 302 (524)
+..++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 265 ~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~ 334 (423)
T PRK04837 265 KHRCEEIWGHLAAD----------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD 334 (423)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC
Confidence 99999999999765 78899999999999999999999999999999999999999999999999988765
Q ss_pred ceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
+..+|+||+||+||. +.|.++.|+++++..
T Consensus 335 ------------------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 335 ------------------DCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred ------------------chhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 667899999999999 789999999887543
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.6e-40 Score=340.32 Aligned_cols=310 Identities=18% Similarity=0.211 Sum_probs=224.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCC-------CCCcEEEEcccchhHHHHHHHHHHHHhC---
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-------TKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~-------~~~~~i~~~~P~r~la~~~~~~~~~~~~--- 74 (524)
.++.|.+.+..+.++++++++|||||||| +++.+++..... ....+++++.|+++++.|+.+.+.+...
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 35788899999999999999999999999 333333322211 1123789999999999999988765432
Q ss_pred CcccceEeEEeecc---cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 75 VRLGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 75 ~~~~~~vg~~~~~~---~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
......+|. ...+ .......+|+|+||+.++..+.... .++++++|||||+| +.++.++... ++.++...+..
T Consensus 104 ~~~~~~~gg-~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~-i~~il~~l~~~ 180 (456)
T PRK10590 104 IRSLVVFGG-VSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHD-IRRVLAKLPAK 180 (456)
T ss_pred CEEEEEECC-cCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHH-HHHHHHhCCcc
Confidence 222222221 1111 1123467899999999998886554 68999999999999 5666665544 55666666667
Q ss_pred cEEEEEeccCChH--HH-hhhcCCCCeeecCCccc---ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 009842 151 LKILITSATLDGE--KV-SKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (524)
Q Consensus 151 ~~ii~~SATl~~~--~~-~~~~~~~~~~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~ 224 (524)
.+++++|||++.+ .+ ..++.+...+.+..+.. .+..++.... . ......+..+.......++||||+++.
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~---~~k~~~l~~l~~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-K---KRKRELLSQMIGKGNWQQVLVFTRTKH 256 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC-H---HHHHHHHHHHHHcCCCCcEEEEcCcHH
Confidence 8999999999764 33 44555544444432221 1111111111 1 111222233333445578999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccce
Q 009842 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (524)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~ 304 (524)
+++.+++.|... ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 257 ~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~-- 324 (456)
T PRK10590 257 GANHLAEQLNKD----------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN-- 324 (456)
T ss_pred HHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC--
Confidence 999999999765 77888999999999999999999999999999999999999999999999988765
Q ss_pred eecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 305 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
+..+|+||+|||||. ..|.|+.+++.++..
T Consensus 325 ----------------~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 325 ----------------VPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred ----------------CHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 677999999999998 789999999876654
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.4e-39 Score=345.67 Aligned_cols=310 Identities=19% Similarity=0.214 Sum_probs=229.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt-~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
.+++|.+++..+.++++++++||||||||. ++.+++... ....+.++++++|+++++.|+++.+.+..+...+..+..
T Consensus 29 ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~ 108 (629)
T PRK11634 29 PSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 (629)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 457899999999999999999999999993 323333222 222345899999999999999988765543222222221
Q ss_pred Ee---eccc---ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009842 84 AI---RFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 84 ~~---~~~~---~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (524)
.. ..+. ......+|+|+||+.+.+.+.... .++++++||+||||+ .++.++... +..++...+...+++++
T Consensus 109 ~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~d-i~~Il~~lp~~~q~llf 186 (629)
T PRK11634 109 LYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIED-VETIMAQIPEGHQTALF 186 (629)
T ss_pred EECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHH-HHHHHHhCCCCCeEEEE
Confidence 11 1111 123467899999999999886654 689999999999994 555555554 55666667778999999
Q ss_pred eccCChH---HHhhhcCCCCeeecCCccc---ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009842 157 SATLDGE---KVSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 157 SATl~~~---~~~~~~~~~~~~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
|||++.. ....|+.+...+.+..... .+...|..... ......+..+.......++||||+|+..++.++
T Consensus 187 SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~----~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG----MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech----hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHH
Confidence 9999764 2456666665555543321 12222221111 112233344444455678999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCC
Q 009842 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~ 310 (524)
+.|... ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 263 ~~L~~~----------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~-------- 324 (629)
T PRK11634 263 EALERN----------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM-------- 324 (629)
T ss_pred HHHHhC----------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC--------
Confidence 999875 77889999999999999999999999999999999999999999999999988654
Q ss_pred CccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 311 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
+..+|+||+||+||. +.|.++.+++..+.
T Consensus 325 ----------~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 325 ----------DSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred ----------CHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 777999999999999 67999999977654
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-39 Score=342.49 Aligned_cols=311 Identities=17% Similarity=0.146 Sum_probs=221.3
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcC-------CCCCcEEEEcccchhHHHHHHHHHHHHhC---
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG-------YTKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~-------~~~~~~i~~~~P~r~la~~~~~~~~~~~~--- 74 (524)
++.|.+.+..+.+|+++++++||||||| +++|.+..... ...+.+++++.|+++++.|+.+.+.....
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~ 224 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP 224 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 5678888999999999999999999999 45554433211 12356899999999999998776644322
Q ss_pred CcccceEeEEeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009842 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 75 ~~~~~~vg~~~~~~--~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~ 151 (524)
......+|...... .......+|+++|||.+...+.... .++++++||+|||| +.++.++... +..++...+ +.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~-i~~i~~~l~-~~ 301 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQ-VMQIFQALS-QP 301 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHH-HHHHHHhCC-CC
Confidence 22222222111100 1123457899999999998886544 78999999999999 5666665544 455555555 78
Q ss_pred EEEEEeccCChH--HHhhhcCCCCe-eecCCcccc---eeEEecCCCCcchHHHHHHHHHHHHhc--CCCCCEEEecCcH
Q 009842 152 KILITSATLDGE--KVSKFFSNCPT-LNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVR--EPEGDVLIFMTGQ 223 (524)
Q Consensus 152 ~ii~~SATl~~~--~~~~~~~~~~~-~~i~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~iLVF~~~~ 223 (524)
|++++|||++.+ .+...+...++ +.+.....+ +...+......+ ....+..+... ...+++||||+++
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCCc
Confidence 999999999764 45555544333 333322111 111111111111 11222222221 2346899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccc
Q 009842 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (524)
Q Consensus 224 ~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~ 303 (524)
..++.+++.|... .++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 378 ~~a~~l~~~L~~~---------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~- 447 (518)
T PLN00206 378 LGADLLANAITVV---------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN- 447 (518)
T ss_pred hhHHHHHHHHhhc---------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC-
Confidence 9999999988764 367888999999999999999999999999999999999999999999999988755
Q ss_pred eeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 304 ~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|||||. ..|.++.+++.++...
T Consensus 448 -----------------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~ 479 (518)
T PLN00206 448 -----------------TIKEYIHQIGRASRMGEKGTAIVFVNEEDRNL 479 (518)
T ss_pred -----------------CHHHHHHhccccccCCCCeEEEEEEchhHHHH
Confidence 778999999999999 6899999998876543
No 26
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-39 Score=340.30 Aligned_cols=307 Identities=22% Similarity=0.310 Sum_probs=237.5
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC--CCCCcE-EEEcccchhHHHHHHHHHHHH---h-CCccc
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGI-IGVTQPRRVAAVSVARRVAQE---L-GVRLG 78 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~--~~~~~~-i~~~~P~r~la~~~~~~~~~~---~-~~~~~ 78 (524)
.+.|.+.+..+..|+++++.|+|||||| +++.+++.... ...... ++++.|||++|.|+++.+... . +..+.
T Consensus 53 t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~ 132 (513)
T COG0513 53 TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVA 132 (513)
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEE
Confidence 4567788888889999999999999999 44444444433 222222 899999999999998876433 3 33334
Q ss_pred ceEeEEeeccc---ccCcccceeecchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 79 EEVGYAIRFED---RTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 79 ~~vg~~~~~~~---~~~~~~~i~~~T~g~l~~~l~~~-~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
..+|. ..... ......+|+|+|||++++++... ..++++.++|+|||+ ++++.+|... +..++...+.+.|++
T Consensus 133 ~i~GG-~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~-i~~I~~~~p~~~qtl 209 (513)
T COG0513 133 VVYGG-VSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDD-IEKILKALPPDRQTL 209 (513)
T ss_pred EEECC-CCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHH-HHHHHHhCCcccEEE
Confidence 44442 11111 12235899999999999998665 489999999999999 8999988777 677888887789999
Q ss_pred EEeccCChH---HHhhhcCCCCeeecCCcc-----cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 155 ITSATLDGE---KVSKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 155 ~~SATl~~~---~~~~~~~~~~~~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
++|||++.. ....++.++..+.+.... ..++..|......+ .....+..+......+++||||+|+..+
T Consensus 210 lfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~ 286 (513)
T COG0513 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLV 286 (513)
T ss_pred EEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHH
Confidence 999999874 234566655555555221 22333333333222 3555566666666667899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
+.++..|... ++.+..+||+|++++|.++++.|++|..+|+||||++++|||||+|.+|||+++|.
T Consensus 287 ~~l~~~l~~~----------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~---- 352 (513)
T COG0513 287 EELAESLRKR----------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL---- 352 (513)
T ss_pred HHHHHHHHHC----------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC----
Confidence 9999999887 78999999999999999999999999999999999999999999999999998865
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
+...|+||+||+||. ..|.++.|++++
T Consensus 353 --------------~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 353 --------------DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred --------------CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 667999999999999 789999999874
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-39 Score=335.05 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=225.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc---C--CCCCcEEEEcccchhHHHHHHHHHHHH---hCCc
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH---G--YTKSGIIGVTQPRRVAAVSVARRVAQE---LGVR 76 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt-~l~~~l~~~---~--~~~~~~i~~~~P~r~la~~~~~~~~~~---~~~~ 76 (524)
.+.+|.+.+..+.+|++++++||||||||. ++.+++... . .....+++++.|+++++.|+++.+... .+..
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcE
Confidence 457888999999999999999999999993 332233211 1 122458999999999999988876443 3444
Q ss_pred ccceEeEEee--cccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEE
Q 009842 77 LGEEVGYAIR--FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (524)
Q Consensus 77 ~~~~vg~~~~--~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (524)
++...|.... .......+.+|+++|||+|+..+.... .+.++++||+||+| +.++.++... +..+....+...++
T Consensus 104 v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~-~~~i~~~~~~~~q~ 181 (434)
T PRK11192 104 IATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQD-IETIAAETRWRKQT 181 (434)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHH-HHHHHHhCccccEE
Confidence 4444431110 111123467899999999999887665 58899999999999 5666555444 45555555557899
Q ss_pred EEEeccCChH---HHhhhcCCCC-eeecCCcc---cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 154 LITSATLDGE---KVSKFFSNCP-TLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 154 i~~SATl~~~---~~~~~~~~~~-~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
+++|||++.. .+..++...+ .+.+.... ..+...+.... ........+..+......+++||||++++++
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRERV 258 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHHH
Confidence 9999999754 3444443333 23222211 11111121111 1222333344444444668999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
+.+++.|... ++.+..+||+|++++|..+++.|++|..+|||||+++++|||+|+|++||++++|.
T Consensus 259 ~~l~~~L~~~----------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~---- 324 (434)
T PRK11192 259 HELAGWLRKA----------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR---- 324 (434)
T ss_pred HHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC----
Confidence 9999999875 77899999999999999999999999999999999999999999999999988755
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|...|+||+||+||. ..|.++.+++.++...
T Consensus 325 --------------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 325 --------------SADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred --------------CHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 777999999999998 7899999998777654
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-39 Score=333.84 Aligned_cols=313 Identities=16% Similarity=0.200 Sum_probs=223.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhC---Ccccce
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~-~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~~~~~~~---~~~~~~ 80 (524)
.++.|.+.+..+.++++++++||||||||.... .++.... ...+.+++++.|+++++.|+.+.+..... ..+...
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~ 130 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 356788999999999999999999999994322 2232222 22456899999999999998876644332 222222
Q ss_pred EeEEeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 81 vg~~~~~~--~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
+|.....+ .......+|+++||+.+.+.+.... .++++++||+||+|+ ..+.++... +..++...+.+.+++++|
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~~~-~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFKGQ-IYDVFKKLPPDVQVALFS 208 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchHHH-HHHHHhhCCCCcEEEEEE
Confidence 33111111 1122346899999999998886655 689999999999994 444333333 445555555689999999
Q ss_pred ccCChHH---HhhhcCCCCeeecCCcc---cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 009842 158 ATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (524)
Q Consensus 158 ATl~~~~---~~~~~~~~~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~ 231 (524)
||++.+. ...++.+...+.+.... ..+..++......++. ...+..........++||||+++++++.+++
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~ 285 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTK 285 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHH
Confidence 9997643 23444443333333221 1122233222222222 2233333344456789999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCC
Q 009842 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (524)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~ 311 (524)
.|.+. ++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||++|+|.
T Consensus 286 ~l~~~----------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~--------- 346 (401)
T PTZ00424 286 KMHER----------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA--------- 346 (401)
T ss_pred HHHHC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC---------
Confidence 98765 67889999999999999999999999999999999999999999999999987654
Q ss_pred ccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 312 ~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|||||. ..|.|+.++++++...
T Consensus 347 ---------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 347 ---------SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred ---------CHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 778999999999998 7899999998887654
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-39 Score=342.13 Aligned_cols=308 Identities=18% Similarity=0.220 Sum_probs=222.9
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC--------CCCCcEEEEcccchhHHHHHHHHHHHHh---C
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~--------~~~~~~i~~~~P~r~la~~~~~~~~~~~---~ 74 (524)
++.|.+.+..+.+|++++++|||||||| +++..++.... ...+.+++++.|+++++.|+++.+.+.. +
T Consensus 33 tpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~ 112 (572)
T PRK04537 33 TPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLG 112 (572)
T ss_pred CHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 5678888999999999999999999999 33333332211 1123589999999999999998764432 2
Q ss_pred CcccceEeEEeeccc---ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 75 VRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 75 ~~~~~~vg~~~~~~~---~~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
..+...+|. ...+. ....+.+|+|+||+.|++.+.... .+.++++|||||+| +.++.++... +..++...+.
T Consensus 113 i~v~~l~Gg-~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~-i~~il~~lp~ 189 (572)
T PRK04537 113 LRFALVYGG-VDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKD-IRFLLRRMPE 189 (572)
T ss_pred ceEEEEECC-CCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHH-HHHHHHhccc
Confidence 223223331 11111 123457899999999999886543 58889999999999 4555555444 4555555543
Q ss_pred --CcEEEEEeccCChHH---HhhhcCCCCeeecCCcccc---eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecC
Q 009842 150 --KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (524)
Q Consensus 150 --~~~ii~~SATl~~~~---~~~~~~~~~~~~i~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~ 221 (524)
+.+++++|||++... ...++.+...+.+...... +...+.... .......+..+.......++||||+
T Consensus 190 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~n 265 (572)
T PRK04537 190 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVN 265 (572)
T ss_pred ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeC
Confidence 679999999997643 3355544433333322111 111111111 1223334444555556779999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcc
Q 009842 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (524)
Q Consensus 222 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~ 301 (524)
++..++.+++.|.+. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|+|++||++++|
T Consensus 266 t~~~ae~l~~~L~~~----------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P 335 (572)
T PRK04537 266 TKAFVERVARTLERH----------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLP 335 (572)
T ss_pred CHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCC
Confidence 999999999999775 7789999999999999999999999999999999999999999999999998875
Q ss_pred cceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 302 k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
. +..+|+||+||+||. ..|.|+.|+++.+.
T Consensus 336 ~------------------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 336 F------------------DAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred C------------------CHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 4 778999999999998 78999999977654
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.8e-39 Score=336.11 Aligned_cols=309 Identities=19% Similarity=0.245 Sum_probs=221.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC-------CCCcEEEEcccchhHHHHHHHHHHHHh---
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-------TKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~-------~~~~~i~~~~P~r~la~~~~~~~~~~~--- 73 (524)
.+.+|.+.+..+.+|+++++++||||||| +++|.+...... .+..+++++.|+++++.|+++.+....
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~ 189 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT 189 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 46899999999999999999999999999 334433221111 114589999999999999988775543
Q ss_pred CCcccceEeEEeeccc----ccCcccceeecchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 74 GVRLGEEVGYAIRFED----RTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 74 ~~~~~~~vg~~~~~~~----~~~~~~~i~~~T~g~l~~~l~~~-~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
+..+...+|. ..... ......+|+++||++|+...... ..++++++|||||+| +.++.++... ++.++...+
T Consensus 190 ~~~v~~~~gg-~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~ 266 (475)
T PRK01297 190 GLNVMTFVGG-MDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQ-VRQIIRQTP 266 (475)
T ss_pred CCEEEEEEcc-CChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHH-HHHHHHhCC
Confidence 3333333331 11111 12345789999999998877543 378999999999999 4445444433 455555543
Q ss_pred --cCcEEEEEeccCChH---HHhhhcCCCCeeecCCccc---ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEec
Q 009842 149 --SKLKILITSATLDGE---KVSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (524)
Q Consensus 149 --~~~~ii~~SATl~~~---~~~~~~~~~~~~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~ 220 (524)
.+.+++++|||++.+ ....|..+...+.+..... .+..++...... .....+..+.......++||||
T Consensus 267 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~IVF~ 342 (475)
T PRK01297 267 RKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS----DKYKLLYNLVTQNPWERVMVFA 342 (475)
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch----hHHHHHHHHHHhcCCCeEEEEe
Confidence 256899999999653 2345555544444332211 111111111111 1222333333445557999999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCc
Q 009842 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (524)
Q Consensus 221 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~ 300 (524)
+++++++.+++.|... ++.+..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||++|+
T Consensus 343 ~s~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 343 NRKDEVRRIEERLVKD----------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred CCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC
Confidence 9999999999999765 677888999999999999999999999999999999999999999999999887
Q ss_pred ccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 301 ~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|. |..+|+||+|||||. +.|.++.++++++.
T Consensus 413 P~------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 413 PE------------------DPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred CC------------------CHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 65 788999999999999 68999999987654
No 31
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=317.35 Aligned_cols=409 Identities=20% Similarity=0.203 Sum_probs=290.7
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh---CCcccceEeEEe-ec-
Q 009842 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEEVGYAI-RF- 87 (524)
Q Consensus 13 i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~---~~~~~~~vg~~~-~~- 87 (524)
+-+-+.+|++.+|+.+|+||||......-.......+++.++++|..++|+|.++.+.+.+ |..+...||..- +-
T Consensus 225 Ve~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~ 304 (830)
T COG1202 225 VEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTR 304 (830)
T ss_pred hhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhccc
Confidence 4456779999999999999999555443333333457899999999999999999887554 455555566321 11
Q ss_pred ----ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCh----HHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 88 ----EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT----DILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 88 ----~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~----~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
....+.+++|++.|++-+.-++.....+.+++.|||||+|. ++. .-+.+++.++....+ +.|+|.+|||
T Consensus 305 ~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHt--L~deERG~RLdGLI~RLr~l~~-~AQ~i~LSAT 381 (830)
T COG1202 305 EEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHT--LEDEERGPRLDGLIGRLRYLFP-GAQFIYLSAT 381 (830)
T ss_pred CCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeee--ccchhcccchhhHHHHHHHhCC-CCeEEEEEee
Confidence 12234679999999999988888888999999999999994 322 236677777777777 9999999999
Q ss_pred C-ChHHHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHH-----HHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 009842 160 L-DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAI-----DIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (524)
Q Consensus 160 l-~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~iLVF~~~~~~~~~~~~~L 233 (524)
+ |++.++..++ ...+..++|+.|++-|..-.....-....+..+. ......-.|++|||.+|++.|+.++..|
T Consensus 382 VgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L 460 (830)
T COG1202 382 VGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADAL 460 (830)
T ss_pred cCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHh
Confidence 9 8888999985 5566678888888765443332221112222222 1223345789999999999999999999
Q ss_pred HHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcc
Q 009842 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~ 313 (524)
... ++.+.++|+||+..+|+.++..|.++.+.++|+|..++.|+|+|+-.+|..+ -
T Consensus 461 ~~k----------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------L 516 (830)
T COG1202 461 TGK----------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------L 516 (830)
T ss_pred hcC----------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------H
Confidence 876 8899999999999999999999999999999999999999999976665542 2
Q ss_pred ccceeeecHHhHHhhccccCCC---CCCeEEEecCc-hhhhhhCcCC----------CCCc--cccc----CchhHHHHH
Q 009842 314 SLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPS-TVYHDEFLDV----------TVPE--IQRS----SLAGSVLYL 373 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~-~~~~~~~~~~----------~~pe--i~~~----~l~~~~l~~ 373 (524)
.+...|+|..+|.||.|||||. ..|++|.+... ..|...|.+. ..|| +..- ..+++ |.
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~v-LA- 594 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENV-LA- 594 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHH-HH-
Confidence 3446799999999999999998 57999998743 3333322221 1222 1111 11222 22
Q ss_pred HhcCCCCc-----ccccccCCCCCCHHHHHHHHHHHHHcccccCCC---CCCHHhHhhccCCCChHHHHHHHHHhhhCCH
Q 009842 374 KSLDLSDI-----NVLKFDFLDPPSSESLEDALKQLYLIDAIDENG---SITSIGRTMAELPLEPSLSRMLMEANEFGCL 445 (524)
Q Consensus 374 ~~~~~~~~-----~~~~~~~~~~p~~~~i~~al~~L~~~g~l~~~~---~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~ 445 (524)
+.++.+. .+....+-. .-....++..|+++|+|+.+| ++|+.|++++..-+.|..|..|..++. ...
T Consensus 595 -~~~v~~s~~~i~~v~~~~~g~---~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~-~~~ 669 (830)
T COG1202 595 -SAGVTNSLSVIERVNSLMLGA---AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGVL-ASM 669 (830)
T ss_pred -HhhhcCcHHHHhhcChhhccc---cCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhhh-ccC
Confidence 2222110 011000100 112467899999999999887 699999999999999999999988862 222
Q ss_pred HHHHHHHHHhcc
Q 009842 446 SQALTVAAMLSA 457 (524)
Q Consensus 446 ~~~l~i~a~~~~ 457 (524)
+.+-|++.+..
T Consensus 670 -~pl~i~~~l~p 680 (830)
T COG1202 670 -DPLRIAAELEP 680 (830)
T ss_pred -ChHhHhhcccc
Confidence 33445554443
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.4e-38 Score=344.62 Aligned_cols=318 Identities=19% Similarity=0.165 Sum_probs=217.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh--CCcccceE
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~--~~~~~~~v 81 (524)
.+++|.+.+..+.+|+++++++||||||| +++|. +.......+.+++++.|+++++.|+.+.+.+.. +..+....
T Consensus 37 p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPi-L~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~ 115 (742)
T TIGR03817 37 PWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPV-LSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYD 115 (742)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHH-HHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 67899999999999999999999999999 44443 333322345689999999999999999886543 12222222
Q ss_pred eEEeecc-cccCcccceeecchHHHHHHHHhC-----CCCCCCceEEEeCCCcCCCC--hHHHHHH---HHHHHhhcccC
Q 009842 82 GYAIRFE-DRTSERTLIKYLTDGVLLREILSN-----PDLSPYSVIILDEAHERSLN--TDILLGL---VKRLVNLRASK 150 (524)
Q Consensus 82 g~~~~~~-~~~~~~~~i~~~T~g~l~~~l~~~-----~~l~~~~~iIiDE~H~~~~~--~~~~~~~---l~~i~~~~~~~ 150 (524)
|.....+ .....+.+|+++||+++...++.. ..++++++|||||+|. ..+ ...+..+ ++++....+.+
T Consensus 116 Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~~~~~il~rL~ri~~~~g~~ 194 (742)
T TIGR03817 116 GDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGSHVALVLRRLRRLCARYGAS 194 (742)
T ss_pred CCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHHHHHHHHHHHHHHHHhcCCC
Confidence 2111100 111245799999999987544321 2488999999999995 322 1112222 33333333457
Q ss_pred cEEEEEeccCC-hHHHhhhcCCCCeeecCCcccc---eeEEecCCC------------CcchHHHHHHHHHHHHhcCCCC
Q 009842 151 LKILITSATLD-GEKVSKFFSNCPTLNVPGKLYP---VEILHSKER------------PTSYLESALKTAIDIHVREPEG 214 (524)
Q Consensus 151 ~~ii~~SATl~-~~~~~~~~~~~~~~~i~~~~~~---v~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g 214 (524)
.|+|++|||++ +..+.+++.+.++..+.....| ....+.... ...........+..+.. .+.
T Consensus 195 ~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~ 272 (742)
T TIGR03817 195 PVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGA 272 (742)
T ss_pred CEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCC
Confidence 89999999994 4444544434444444332211 111111111 00111122222322222 357
Q ss_pred CEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeE
Q 009842 215 DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVY 294 (524)
Q Consensus 215 ~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~ 294 (524)
++||||+|++.++.++..|.+.+...... .+..+..+||++++++|.++++.|++|++++|||||++|+|||||++++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~--l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPD--LAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccc--cccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 99999999999999999998764332111 2456788999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009842 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 295 VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
||++|+|. +.++|+||+|||||. +.|.++.+.+.+
T Consensus 351 VI~~~~P~------------------s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 351 VVIAGFPG------------------TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred EEEeCCCC------------------CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 99999766 778999999999999 679999888643
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-38 Score=341.56 Aligned_cols=307 Identities=19% Similarity=0.159 Sum_probs=215.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
..+.|.+++.++..|+++++++|||+||| +++|.++. ++.++++.|+++|+.++...+.. .+.......|.
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 35689999999999999999999999999 56665542 45789999999999876666543 34443333221
Q ss_pred Eeeccc------c--cCcccceeecchHHHHH------HHHhCCCCCCCceEEEeCCCcCCCCh-HHHHHH--HHHHHhh
Q 009842 84 AIRFED------R--TSERTLIKYLTDGVLLR------EILSNPDLSPYSVIILDEAHERSLNT-DILLGL--VKRLVNL 146 (524)
Q Consensus 84 ~~~~~~------~--~~~~~~i~~~T~g~l~~------~l~~~~~l~~~~~iIiDE~H~~~~~~-~~~~~~--l~~i~~~ 146 (524)
....+. . .....+|+|+|||++.. .+........+++|||||||+.+-+. +|...+ +..+...
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~ 613 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK 613 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh
Confidence 110000 0 11457899999998752 22211134568999999999754332 443332 2234444
Q ss_pred cccCcEEEEEeccCChH---HHhhhcCCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHh-cCCCCCEEEecCc
Q 009842 147 RASKLKILITSATLDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTG 222 (524)
Q Consensus 147 ~~~~~~ii~~SATl~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~iLVF~~~ 222 (524)
.+ +.+++++|||++.. .+...++......+..........|...+.... ....+..... ....+..||||++
T Consensus 614 fp-~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 614 FP-NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred CC-CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCc
Confidence 44 78899999999764 345555432222111111111223322222111 1122222222 2235678999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccc
Q 009842 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (524)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k 302 (524)
+++++.+++.|... ++.+.++||+|++++|..+++.|.+|..+|||||+++++|||+|+|++||++++|+
T Consensus 690 Rke~E~LAe~L~~~----------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 690 RMDCEKVAERLQEF----------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred hhHHHHHHHHHHHC----------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC
Confidence 99999999999875 78899999999999999999999999999999999999999999999999999877
Q ss_pred ceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|||||. .+|.|+.+|+..++..
T Consensus 760 ------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 760 ------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred ------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 778999999999999 6899999998877743
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-38 Score=329.59 Aligned_cols=304 Identities=17% Similarity=0.136 Sum_probs=214.1
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEE
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~ 84 (524)
++.|.+++..+.+|+++++++||||||| +++|.+. .++.++++.|+++++.++.+++. ..|.......+..
T Consensus 13 r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~-~~gi~~~~l~~~~ 85 (470)
T TIGR00614 13 RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLK-ASGIPATFLNSSQ 85 (470)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHH-HcCCcEEEEeCCC
Confidence 5689999999999999999999999999 4555443 24568889999999999988875 3454432222211
Q ss_pred eec------ccccCcccceeecchHHHHHHH--HhCC-CCCCCceEEEeCCCcCCCCh-HHHHH--HHHHHHhhcccCcE
Q 009842 85 IRF------EDRTSERTLIKYLTDGVLLREI--LSNP-DLSPYSVIILDEAHERSLNT-DILLG--LVKRLVNLRASKLK 152 (524)
Q Consensus 85 ~~~------~~~~~~~~~i~~~T~g~l~~~l--~~~~-~l~~~~~iIiDE~H~~~~~~-~~~~~--~l~~i~~~~~~~~~ 152 (524)
... ........+|+++||+.+.... .... ...++++|||||||+.+-+. ++... .+..+....+ +.+
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ 164 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-NVP 164 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-CCc
Confidence 100 0112345789999999875321 1111 46889999999999644322 23222 2334444555 889
Q ss_pred EEEEeccCChHH---HhhhcCC--CCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHh-cCCCCCEEEecCcHHHH
Q 009842 153 ILITSATLDGEK---VSKFFSN--CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTGQDDI 226 (524)
Q Consensus 153 ii~~SATl~~~~---~~~~~~~--~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~iLVF~~~~~~~ 226 (524)
++++|||++... +.++++- +.++...-....+....... ..+.. ..+..... ..++..+||||++++++
T Consensus 165 ~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~-~~~~~----~~l~~~l~~~~~~~~~IIF~~s~~~~ 239 (470)
T TIGR00614 165 IMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRK-TPKIL----EDLLRFIRKEFKGKSGIIYCPSRKKS 239 (470)
T ss_pred eEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeC-CccHH----HHHHHHHHHhcCCCceEEEECcHHHH
Confidence 999999998753 4444432 22222211111111111111 11222 22233222 23445669999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
+.+++.|.+. ++.+..+||+|++++|..+++.|++|..+|||||+++++|||+|+|++||+++.|+
T Consensus 240 e~la~~L~~~----------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~---- 305 (470)
T TIGR00614 240 EQVTASLQNL----------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK---- 305 (470)
T ss_pred HHHHHHHHhc----------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC----
Confidence 9999999875 78889999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|||||. .+|.|+.+|+..+...
T Consensus 306 --------------s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 306 --------------SMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred --------------CHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 778999999999999 6899999999887654
No 35
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=308.79 Aligned_cols=305 Identities=20% Similarity=0.266 Sum_probs=234.1
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhc--C-------CCCCcEEEEcccchhHHHHHHHH---HHHHhCC
Q 009842 10 EETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH--G-------YTKSGIIGVTQPRRVAAVSVARR---VAQELGV 75 (524)
Q Consensus 10 ~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~--~-------~~~~~~i~~~~P~r~la~~~~~~---~~~~~~~ 75 (524)
|...+....++.+++.+++|||||| .++|++.... + ...|...++..|+|.+++|+... +.+.+|.
T Consensus 272 qR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~ 351 (673)
T KOG0333|consen 272 QRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGI 351 (673)
T ss_pred HHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccc
Confidence 4444556678888899999999999 4445444322 1 12466889999999999998764 4556667
Q ss_pred cccceEeEEeeccc---ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc---
Q 009842 76 RLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--- 148 (524)
Q Consensus 76 ~~~~~vg~~~~~~~---~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~--- 148 (524)
.+...+|.. +++. +.+..+.|+++|||.|...+-+.- .+.++.+||+|||+ +++|.+|-..+.+ ++...|
T Consensus 352 r~vsvigg~-s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~-iL~~mPssn 428 (673)
T KOG0333|consen 352 RTVSVIGGL-SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQK-ILEQMPSSN 428 (673)
T ss_pred eEEEEeccc-chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHH-HHHhCCccc
Confidence 777777733 3433 356789999999999998885443 78999999999999 8888888666433 333332
Q ss_pred ----------------------cCcEEEEEeccCChH---HHhhhcCCCCeeecCC--cccc-eeEEecCCCCcchHHHH
Q 009842 149 ----------------------SKLKILITSATLDGE---KVSKFFSNCPTLNVPG--KLYP-VEILHSKERPTSYLESA 200 (524)
Q Consensus 149 ----------------------~~~~ii~~SATl~~~---~~~~~~~~~~~~~i~~--~~~~-v~~~~~~~~~~~~~~~~ 200 (524)
.-.+.+++|||+++. ....||..+.++.+.. +..| ++....... .++.
T Consensus 429 ~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~----ed~k 504 (673)
T KOG0333|consen 429 AKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVS----EDEK 504 (673)
T ss_pred cCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEec----chHH
Confidence 015789999999874 4668888777766653 3322 111111111 1223
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec
Q 009842 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (524)
Q Consensus 201 ~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT 280 (524)
...++.+.......++|||+|+++.|+.+|+.|.+. ++.+..|||+-++++|..+++.|+.|...|+|||
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT 574 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA----------GYKVTTLHGGKSQEQRENALADFREGTGDILVAT 574 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445555555555679999999999999999999987 8999999999999999999999999999999999
Q ss_pred CccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 281 ~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|+|++|||||||.+|||++++| |...|.||+||+||. +.|.++.|+++++-
T Consensus 575 DvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 575 DVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred cccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEeccchh
Confidence 9999999999999999999888 777999999999999 78999999999883
No 36
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=299.74 Aligned_cols=311 Identities=18% Similarity=0.185 Sum_probs=232.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhc----CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH----GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~----~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~ 79 (524)
....|+..+.-+..|+++++.|.||+||| .++|.+-... ....+..++++.|||++|.|.+....+.+....+.
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 34578888888899999999999999999 5666554332 12245578899999999999988776555443344
Q ss_pred eEeEEeeccc------ccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009842 80 EVGYAIRFED------RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 80 ~vg~~~~~~~------~~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~ 151 (524)
.+|+.+.... ......+|+|+|||+|+.++.+.+ ...+.+++|+|||| |.++.+|..+ ++.++...|...
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~d-i~~Ii~~lpk~r 262 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEED-VEQIIKILPKQR 262 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHH-HHHHHHhccccc
Confidence 4444333322 223478999999999999998766 67788999999999 8999999888 677888888899
Q ss_pred EEEEEeccCChH--HHhhh-cCC-CCeeecCCcccc-----eeEEecCCCCcchHHHHHHHHHHHHhcCCC-CCEEEecC
Q 009842 152 KILITSATLDGE--KVSKF-FSN-CPTLNVPGKLYP-----VEILHSKERPTSYLESALKTAIDIHVREPE-GDVLIFMT 221 (524)
Q Consensus 152 ~ii~~SATl~~~--~~~~~-~~~-~~~~~i~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~iLVF~~ 221 (524)
|.+++|||.+.+ .++.. +.. +..+.+.....+ ++.-|...+.... +..+....+.... .+++|||+
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch----HHHHHHHHHHhcCCceEEEEec
Confidence 999999999865 23322 222 233333222111 1222222222222 2223333332333 79999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcc
Q 009842 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (524)
Q Consensus 222 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~ 301 (524)
|...+.-+++.|... .+.|..+||++++..|..++..|.+.+.-|+||||++++|+|+|+|+.||++|.|
T Consensus 339 T~~~vk~~~~lL~~~----------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 339 TCMSVKFHAELLNYI----------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred hhhHHHHHHHHHhhc----------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCC
Confidence 999999999999854 7889999999999999999999999999999999999999999999999998876
Q ss_pred cceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 302 k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
. ...+|+||.||+||. +.|+.+.+..+++..
T Consensus 409 ~------------------d~~~YIHRvGRTaR~gk~G~alL~l~p~El~ 440 (543)
T KOG0342|consen 409 S------------------DPEQYIHRVGRTAREGKEGKALLLLAPWELG 440 (543)
T ss_pred C------------------CHHHHHHHhccccccCCCceEEEEeChhHHH
Confidence 6 556999999999998 789999988766554
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.4e-37 Score=330.29 Aligned_cols=305 Identities=17% Similarity=0.197 Sum_probs=216.3
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
.++.|+++++.+..|+++++++||||||| .++|.+.. ++.++++.|+++++.++...+.. .|.......+.
T Consensus 26 ~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~ 98 (607)
T PRK11057 26 FRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNST 98 (607)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCC
Confidence 35789999999999999999999999999 45555432 34688899999999999887754 44433221111
Q ss_pred Eee------cccccCcccceeecchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCCh-HHHH--HHHHHHHhhcccCcEE
Q 009842 84 AIR------FEDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNT-DILL--GLVKRLVNLRASKLKI 153 (524)
Q Consensus 84 ~~~------~~~~~~~~~~i~~~T~g~l~~~l-~~~~~l~~~~~iIiDE~H~~~~~~-~~~~--~~l~~i~~~~~~~~~i 153 (524)
... +........+++|+||+.+.... .......++++|||||||+.+-+. ++.. ..+..+....+ +.++
T Consensus 99 ~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~ 177 (607)
T PRK11057 99 QTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPF 177 (607)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-CCcE
Confidence 000 00112245689999999887432 222234579999999999744332 2221 22444555555 8899
Q ss_pred EEEeccCChHH---HhhhcC-CCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Q 009842 154 LITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (524)
Q Consensus 154 i~~SATl~~~~---~~~~~~-~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~ 229 (524)
+++|||++... +...++ ..+.+.+..-..| .+.|........ ...+........++++||||+|+++++.+
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIFc~tr~~~e~l 252 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKP----LDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccch----HHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 99999997643 333332 2333333221111 111211111111 22233333345667999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCC
Q 009842 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (524)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~ 309 (524)
++.|.+. ++.+..+||+|++++|.++++.|++|..+|||||+++++|||+|+|++||++++|+
T Consensus 253 a~~L~~~----------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------- 315 (607)
T PRK11057 253 AARLQSR----------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------- 315 (607)
T ss_pred HHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC-------
Confidence 9999876 78899999999999999999999999999999999999999999999999988766
Q ss_pred CCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 310 ~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+|||||. .+|.|+.+|+..+...
T Consensus 316 -----------s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 316 -----------NIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred -----------CHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 778999999999999 6899999999887543
No 38
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=305.02 Aligned_cols=309 Identities=22% Similarity=0.270 Sum_probs=232.0
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCC----CcEEEEcccchhHHHHHHH---HHHHHhCCcccce
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK----SGIIGVTQPRRVAAVSVAR---RVAQELGVRLGEE 80 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~~~----~~~i~~~~P~r~la~~~~~---~~~~~~~~~~~~~ 80 (524)
.|.+.+....-|++++-+|-|||||| .++.+++....+.+ ..+++++.|||.++.|++. .+++...+.++..
T Consensus 207 IQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~ 286 (691)
T KOG0338|consen 207 IQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLA 286 (691)
T ss_pred hhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeee
Confidence 35555665667899999999999999 55555665544432 3489999999999998765 5677777777777
Q ss_pred EeEE-ee-cccccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009842 81 VGYA-IR-FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 81 vg~~-~~-~~~~~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (524)
+|.- ++ .+.......+|+++|||++..++.+.+ .++++.++|+|||+ |+++..|... +..+++.++.+.|.+++
T Consensus 287 vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFade-mnEii~lcpk~RQTmLF 364 (691)
T KOG0338|consen 287 VGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADE-MNEIIRLCPKNRQTMLF 364 (691)
T ss_pred ecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHH-HHHHHHhccccccceee
Confidence 7721 11 122345679999999999999998887 78999999999999 8999888877 78899999989999999
Q ss_pred eccCChH--HHhhh-cCCCCeeecCCccc---ceeEEecCC-CCcchH-HHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 009842 157 SATLDGE--KVSKF-FSNCPTLNVPGKLY---PVEILHSKE-RPTSYL-ESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (524)
Q Consensus 157 SATl~~~--~~~~~-~~~~~~~~i~~~~~---~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~ 228 (524)
||||+.+ .+... ++.+..+.+..... .+...|... +..+.. +..+..++. ..-...++||+.|++.|++
T Consensus 365 SATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~---rtf~~~~ivFv~tKk~AHR 441 (691)
T KOG0338|consen 365 SATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT---RTFQDRTIVFVRTKKQAHR 441 (691)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH---HhcccceEEEEehHHHHHH
Confidence 9999754 34433 33333344433211 111111111 111111 111111211 1224589999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC
Q 009842 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (524)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~ 308 (524)
+.-.|.-. ++.+.-+||+|++++|.+.++.|+++++.||||||+|++|+||++|..|||+.+|+
T Consensus 442 l~IllGLl----------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~------ 505 (691)
T KOG0338|consen 442 LRILLGLL----------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK------ 505 (691)
T ss_pred HHHHHHHh----------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch------
Confidence 87766554 88899999999999999999999999999999999999999999999999988766
Q ss_pred CCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 309 ~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
+...|+||.||+.|. +.|..+.|..+++..
T Consensus 506 ------------t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 506 ------------TIEHYLHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred ------------hHHHHHHHhhhhhhcccCcceEEEeccccHH
Confidence 788999999999999 789999999887553
No 39
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-37 Score=276.22 Aligned_cols=311 Identities=18% Similarity=0.242 Sum_probs=234.6
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-CCcEEEEcccchhHHHHHHHHHH---HHhCCcccceEe
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~~-~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~~vg 82 (524)
..|+..+..+.+|++++..+..|+||| ++..-.+...... +...++++.|+|+++.|+-+.+. ..++.++...+|
T Consensus 52 ~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacig 131 (400)
T KOG0328|consen 52 AIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIG 131 (400)
T ss_pred HHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEec
Confidence 456666677889999999999999999 4333333333322 33589999999999999877653 445555555554
Q ss_pred EEeeccc--ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 83 YAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 83 ~~~~~~~--~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
...-.++ ...-..+++..|||.++.++.... ..+.+.++|+||++| .++.++-.. +-.+.+..|++.|++++|||
T Consensus 132 g~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Q-iydiyr~lp~~~Qvv~~SAT 209 (400)
T KOG0328|consen 132 GKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQ-IYDIYRYLPPGAQVVLVSAT 209 (400)
T ss_pred CCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHH-HHHHHHhCCCCceEEEEecc
Confidence 3221111 223567899999999999986554 678899999999995 555555444 55666777779999999999
Q ss_pred CChHHH---hhhcCCCCeeecCCcccc---eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 009842 160 LDGEKV---SKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (524)
Q Consensus 160 l~~~~~---~~~~~~~~~~~i~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L 233 (524)
+|.+.+ ..|..++..+.+.....+ ++.+|......++..+.+ .+++..-.-.+.+|||||+..+..+.+.+
T Consensus 210 lp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL---cdLYd~LtItQavIFcnTk~kVdwLtekm 286 (400)
T KOG0328|consen 210 LPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLTEKM 286 (400)
T ss_pred CcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH---HHHhhhhehheEEEEecccchhhHHHHHH
Confidence 998753 355555544555443333 344555555555544433 33333344468999999999999999999
Q ss_pred HHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcc
Q 009842 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~ 313 (524)
++. ++.+..+||+|++++|++++..|+.|.-+|+++|++-++|+|+|.|..|||+++|.
T Consensus 287 ~~~----------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~----------- 345 (400)
T KOG0328|consen 287 REA----------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN----------- 345 (400)
T ss_pred Hhh----------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc-----------
Confidence 886 78899999999999999999999999999999999999999999999999998866
Q ss_pred ccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
....|+||+||+||. +.|.++.+...++...
T Consensus 346 -------nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 346 -------NRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred -------cHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 456999999999999 8899999998887654
No 40
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=291.13 Aligned_cols=328 Identities=19% Similarity=0.211 Sum_probs=244.3
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc----CCCCCc--EEEEcccchhHHHHHHHHHHHH----hCC
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH----GYTKSG--IIGVTQPRRVAAVSVARRVAQE----LGV 75 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~----~~~~~~--~i~~~~P~r~la~~~~~~~~~~----~~~ 75 (524)
.+.|..-+..+.+++++++.++|||||| +++.+++... ...+.+ -.+++.|||+++.|+.+-+... .+.
T Consensus 30 TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l 109 (567)
T KOG0345|consen 30 TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNL 109 (567)
T ss_pred CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhcc
Confidence 3567778888899999999999999999 4444444322 111222 5688999999999987755322 344
Q ss_pred cccceEeEEeeccc---ccCcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 76 RLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 76 ~~~~~vg~~~~~~~---~~~~~~~i~~~T~g~l~~~l~~~~---~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
.+...+|...-.++ ....+..|+++|||+|..++.... .+..++++|+|||| |.++.+|... +..++...|.
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~-~n~ILs~LPK 187 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEAS-VNTILSFLPK 187 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHH-HHHHHHhccc
Confidence 45556663211111 123568899999999999987633 45599999999999 9999999887 7888888888
Q ss_pred CcEEEEEeccCChH--H-HhhhcCCCCeeecCCcc---cc--eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecC
Q 009842 150 KLKILITSATLDGE--K-VSKFFSNCPTLNVPGKL---YP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (524)
Q Consensus 150 ~~~ii~~SATl~~~--~-~~~~~~~~~~~~i~~~~---~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~ 221 (524)
+.+.=++|||.+.+ + ....+.|+..+.+.... .| +...|..... +.....++++......+++|||.+
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF~ 263 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFFP 263 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH----HHHHHHHHHHHhccccccEEEEec
Confidence 88899999999543 3 34455555555554432 33 4445544333 233445566666667789999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcc
Q 009842 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (524)
Q Consensus 222 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~ 301 (524)
|-..++-....+.... .+..++.+||.|.+.+|.++++.|.+-...+++|||+|++|||||+|++||+++.|
T Consensus 264 TCasVeYf~~~~~~~l--------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP 335 (567)
T KOG0345|consen 264 TCASVEYFGKLFSRLL--------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPP 335 (567)
T ss_pred CcchHHHHHHHHHHHh--------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCC
Confidence 9999999999888773 47789999999999999999999999888999999999999999999999998877
Q ss_pred cceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEec--CchhhhhhCcCCCCCcccccCc
Q 009842 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY--PSTVYHDEFLDVTVPEIQRSSL 366 (524)
Q Consensus 302 k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~--~~~~~~~~~~~~~~pei~~~~l 366 (524)
+ ..+++.||+||+||. +.|.++.+. .+++|...|.-...|++.+...
T Consensus 336 ~------------------~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 336 K------------------DPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred C------------------ChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 6 455889999999998 678766655 5566666566666777766543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3e-36 Score=322.85 Aligned_cols=303 Identities=19% Similarity=0.209 Sum_probs=214.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
..+.|+++++++..|+++++++|||+||| +++|.++. ++.++++.|+++++.++.+.+.+ +|..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s- 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS- 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC-
Confidence 35689999999999999999999999999 45554432 45678889999999999888754 4544322211
Q ss_pred Eeeccc-------ccCcccceeecchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCCh-HHHHH--HHHHHHhhcccCcE
Q 009842 84 AIRFED-------RTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNT-DILLG--LVKRLVNLRASKLK 152 (524)
Q Consensus 84 ~~~~~~-------~~~~~~~i~~~T~g~l~~~l-~~~~~l~~~~~iIiDE~H~~~~~~-~~~~~--~l~~i~~~~~~~~~ 152 (524)
...... ......+++++||+.+.... .......++++|||||+|+.+.+. ++... .+..+....+ +.+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~ 164 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVP 164 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCC
Confidence 111111 11245789999999886433 222346689999999999754332 23222 2344444455 566
Q ss_pred EEEEeccCChHH---HhhhcCCC-CeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 009842 153 ILITSATLDGEK---VSKFFSNC-PTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (524)
Q Consensus 153 ii~~SATl~~~~---~~~~~~~~-~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~ 228 (524)
++++|||++... +..+++-. +...+..- ......|......+. ...+........++++||||+|+++++.
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKVEE 239 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 999999997653 55555421 22211111 111122221111111 1222333333446789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC
Q 009842 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (524)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~ 308 (524)
+++.|... ++.+..+||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++||++++|+
T Consensus 240 la~~L~~~----------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------ 303 (591)
T TIGR01389 240 LAERLESQ----------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------ 303 (591)
T ss_pred HHHHHHhC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------
Confidence 99999765 77789999999999999999999999999999999999999999999999988766
Q ss_pred CCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 309 ~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
|..+|.||+|||||. .+|.|+.+|+..+..
T Consensus 304 ------------s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 304 ------------NLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred ------------CHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 778999999999998 689999999888764
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7e-36 Score=329.86 Aligned_cols=313 Identities=20% Similarity=0.208 Sum_probs=211.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcC------CCCCcEEEEcccchhHHHHHHHHHHH------
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQ------ 71 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~------~~~~~~i~~~~P~r~la~~~~~~~~~------ 71 (524)
.++.|.+.+..+.+|++++++|||||||| .++|.+-.... ...+..++++.|+++++.|+++++.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999 34443322111 12345789999999999999886542
Q ss_pred ----HhCCcc-cceEeEEee---ccc---ccCcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCC---hH
Q 009842 72 ----ELGVRL-GEEVGYAIR---FED---RTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLN---TD 134 (524)
Q Consensus 72 ----~~~~~~-~~~vg~~~~---~~~---~~~~~~~i~~~T~g~l~~~l~~~~---~l~~~~~iIiDE~H~~~~~---~~ 134 (524)
..|... +..++.... ... ......+|+++||+.+..++.... .+.++++||+||+|+ ..+ ..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 123222 222221110 001 112357899999999976654322 578999999999995 332 22
Q ss_pred HHHHHHHHHHhhcccCcEEEEEeccCC-hHHHhhhcCCC-------CeeecCC---cccceeEEecCC-----CCcchHH
Q 009842 135 ILLGLVKRLVNLRASKLKILITSATLD-GEKVSKFFSNC-------PTLNVPG---KLYPVEILHSKE-----RPTSYLE 198 (524)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~ii~~SATl~-~~~~~~~~~~~-------~~~~i~~---~~~~v~~~~~~~-----~~~~~~~ 198 (524)
.+...+.++....+.+.++|++|||++ .+.++.|+... ++..+.. +..++.+..... .......
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~ 271 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISE 271 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHH
Confidence 233445555555544789999999994 46788887542 1222221 112222221100 0111112
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEE
Q 009842 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (524)
Q Consensus 199 ~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilv 278 (524)
.....+.... ...+++||||||++.++.++..|.+..... ..+..+..|||+|++++|..+++.|++|.++|||
T Consensus 272 ~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~----~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLV 345 (876)
T PRK13767 272 ALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEE----YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVV 345 (876)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhh----ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2222232222 235689999999999999999998753211 1245788899999999999999999999999999
Q ss_pred ecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC----CCCeEEEe
Q 009842 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT----RPGKCYRL 343 (524)
Q Consensus 279 aT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~----~~G~~~~l 343 (524)
||+++++|||+|+|++||++|.|+ |.++|+||+|||||. ..|.++..
T Consensus 346 aTs~Le~GIDip~Vd~VI~~~~P~------------------sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 346 SSTSLELGIDIGYIDLVVLLGSPK------------------SVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ECChHHhcCCCCCCcEEEEeCCCC------------------CHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999988655 788999999999986 24666664
No 43
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-36 Score=279.84 Aligned_cols=313 Identities=20% Similarity=0.248 Sum_probs=232.7
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-CCcEEEEcccchhHHHHHHHHHH---HHhCCcccceEe
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~~-~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~~vg 82 (524)
+.|+.-+..|..|++++-+|.|||||| .+..+++...... .+...++..|+|.++.|+++++. +.++.++...+|
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG 111 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG 111 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc
Confidence 467788888999999999999999999 5555566554443 35578899999999999999874 344555555566
Q ss_pred EE--eecccccCcccceeecchHHHHHHHHhCC-----CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 83 YA--IRFEDRTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 83 ~~--~~~~~~~~~~~~i~~~T~g~l~~~l~~~~-----~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
.. +......+.+.+++++|||++...+.+++ .++++.++|+|||+ +.++.+|-.. |+.+....|...|.++
T Consensus 112 G~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 112 GTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECLPKPRQTLL 189 (442)
T ss_pred cHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhH-HhhhhccCCCccceEE
Confidence 32 22233446789999999999999998773 68999999999999 8888877655 6777777776679999
Q ss_pred EeccCChHHHhhhcCCCC------eeecCCcccceeEEecCCC-CcchHHH-HHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 009842 156 TSATLDGEKVSKFFSNCP------TLNVPGKLYPVEILHSKER-PTSYLES-ALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (524)
Q Consensus 156 ~SATl~~~~~~~~~~~~~------~~~i~~~~~~v~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~iLVF~~~~~~~~ 227 (524)
+|||++.. +...++-+. .........-++..+.... ...+..+ ..-.++.....++.+.++||+++..+++
T Consensus 190 fSATitd~-i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 190 FSATITDT-IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQ 268 (442)
T ss_pred EEeehhhH-HHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHH
Confidence 99999643 344432211 1111011111111111110 0111111 1112222333446889999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeec
Q 009842 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (524)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~ 307 (524)
.++..|... ++.+..+||.|++.+|...+..|+.+..+||+|||+|++|+|||.|..|||+++|+
T Consensus 269 ~l~~~l~~l----------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr----- 333 (442)
T KOG0340|consen 269 LLSMTLKNL----------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPR----- 333 (442)
T ss_pred HHHHHHhhh----------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCC-----
Confidence 999999886 89999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 308 ~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
....|+||.||+.|. +.|..+.++++.+.+.
T Consensus 334 -------------~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l 365 (442)
T KOG0340|consen 334 -------------DPKDYIHRVGRTARAGRKGMAISIVTQRDVEL 365 (442)
T ss_pred -------------CHHHHHHhhcchhcccCCcceEEEechhhHHH
Confidence 444899999999998 6799999998766654
No 44
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=294.66 Aligned_cols=313 Identities=18% Similarity=0.217 Sum_probs=242.1
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHH--hcCC--CCCcEEEEcccchhHHHHHHHHH---HHHhCCcc
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILH--RHGY--TKSGIIGVTQPRRVAAVSVARRV---AQELGVRL 77 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~--~~~~--~~~~~i~~~~P~r~la~~~~~~~---~~~~~~~~ 77 (524)
.+.|.+.+.....|.+++-.|.|||||| .++|.+-. ...+ ..|.-++++.|||++|.|.+..+ ++..+...
T Consensus 93 teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSa 172 (758)
T KOG0343|consen 93 TEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSA 172 (758)
T ss_pred HHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcccccc
Confidence 3566666777778999999999999999 44444322 2223 23447889999999999988755 45566777
Q ss_pred cceEeEE-eecccccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 78 GEEVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 78 ~~~vg~~-~~~~~~~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
|..+|.. +.++...-.+.+|++||||+|+.++...+ ...++.++|+|||+ |.++++|-.. +..++...|...|.+
T Consensus 173 GLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~t-L~~Ii~~lP~~RQTL 250 (758)
T KOG0343|consen 173 GLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKT-LNAIIENLPKKRQTL 250 (758)
T ss_pred ceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHH-HHHHHHhCChhheee
Confidence 7777732 33444444678999999999999998887 56688899999999 9999998776 788888888899999
Q ss_pred EEeccCCh--HHHhhh-cCCCCeeecCCc-----ccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 155 ITSATLDG--EKVSKF-FSNCPTLNVPGK-----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 155 ~~SATl~~--~~~~~~-~~~~~~~~i~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
++|||... .++++. +.++..+.+... +......|...+ +...+..+..........++|||++|.+++
T Consensus 251 LFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~----l~~Ki~~L~sFI~shlk~K~iVF~SscKqv 326 (758)
T KOG0343|consen 251 LFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP----LEDKIDMLWSFIKSHLKKKSIVFLSSCKQV 326 (758)
T ss_pred eeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe----hhhHHHHHHHHHHhccccceEEEEehhhHH
Confidence 99999843 456655 344555544321 111222333222 234455555555667778999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
.-+++.+.+.- +++.++.+||+|++..|..++..|-...--|++||+++++|+|+|.|++||+.+.
T Consensus 327 kf~~e~F~rlr--------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC------ 392 (758)
T KOG0343|consen 327 KFLYEAFCRLR--------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC------ 392 (758)
T ss_pred HHHHHHHHhcC--------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecC------
Confidence 99999998873 7899999999999999999999999888899999999999999999999998664
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|....+|+||+||+.|. ..|.|+.+.++.+.+.
T Consensus 393 ------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 393 ------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ------------chhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 55888999999999999 7899999887777443
No 45
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=278.33 Aligned_cols=309 Identities=19% Similarity=0.234 Sum_probs=235.9
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHH---HHHHHhCCcccceEeE
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVAR---RVAQELGVRLGEEVGY 83 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~---~~~~~~~~~~~~~vg~ 83 (524)
.|++-+.....|++++.-|.+|+||| .+..+.+..... ......++++|+|++|.|..+ ++++.++..+...+|.
T Consensus 111 iQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGG 190 (459)
T KOG0326|consen 111 IQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGG 190 (459)
T ss_pred ccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCC
Confidence 46666777789999999999999999 333334444333 233477889999999887654 5667777777667774
Q ss_pred Eeecccc--cCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 84 AIRFEDR--TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 84 ~~~~~~~--~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..-.++. .....+++++|||++++++.... .++++.++|+|||+ ..++.+|... +..++...|++.|+++.|||.
T Consensus 191 T~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~-~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 191 TSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPI-VEKLISFLPKERQILLYSATF 268 (459)
T ss_pred cccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhH-HHHHHHhCCccceeeEEeccc
Confidence 4433333 34668999999999999986654 89999999999999 6788887655 788888889899999999999
Q ss_pred ChH---HHhhhcCCCCeeecCCcccc--eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 009842 161 DGE---KVSKFFSNCPTLNVPGKLYP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (524)
Q Consensus 161 ~~~---~~~~~~~~~~~~~i~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~ 235 (524)
|.. -..+++.++-.++.-....+ +..+|.-..+..-+. .+..+ ..+-.-.+.+||||+...++.+|+.+.+
T Consensus 269 P~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvh-CLntL---fskLqINQsIIFCNS~~rVELLAkKITe 344 (459)
T KOG0326|consen 269 PLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVH-CLNTL---FSKLQINQSIIFCNSTNRVELLAKKITE 344 (459)
T ss_pred chhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhh-hHHHH---HHHhcccceEEEeccchHhHHHHHHHHh
Confidence 753 24466666655555443322 333332222111111 11111 1222335899999999999999999988
Q ss_pred HhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcccc
Q 009842 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l 315 (524)
. ++.+.+.|+.|-++.|.++|..|++|..+.+||||.+.+|||+++|++|||+++||
T Consensus 345 l----------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------------- 401 (459)
T KOG0326|consen 345 L----------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------------- 401 (459)
T ss_pred c----------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-------------
Confidence 7 89999999999999999999999999999999999999999999999999999988
Q ss_pred ceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 316 DVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 316 ~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+.++|.||+||+||. ..|.++.|.+-++...
T Consensus 402 -----~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 402 -----NAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred -----CHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 666999999999999 7899999998776654
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.7e-35 Score=308.74 Aligned_cols=299 Identities=22% Similarity=0.262 Sum_probs=226.6
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC-----CCCcEEEEcccchhHHHHHHHHH---HHHhCCc
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~-----~~~~~i~~~~P~r~la~~~~~~~---~~~~~~~ 76 (524)
.+.|...+..+.+|++++|+|||||||| .++|.+-..... ..+..++++.|.|++..++.+++ .+.+|..
T Consensus 24 t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~ 103 (814)
T COG1201 24 TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIE 103 (814)
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCc
Confidence 4578888999999999999999999999 666655443322 22457899999999999998886 4667777
Q ss_pred ccceEeEEeecccc--cCcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCC-CChHHHHH-HHHHHHhhccc
Q 009842 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERS-LNTDILLG-LVKRLVNLRAS 149 (524)
Q Consensus 77 ~~~~vg~~~~~~~~--~~~~~~i~~~T~g~l~~~l~~~~---~l~~~~~iIiDE~H~~~-~~~~~~~~-~l~~i~~~~~~ 149 (524)
+....|.....+.+ .....+|+++||+.|.-++.+.. .+.++.+|||||+|+.. -..+..+. .+.++....+
T Consensus 104 v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~- 182 (814)
T COG1201 104 VAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG- 182 (814)
T ss_pred cceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-
Confidence 76666654443332 23568999999999987765432 79999999999999732 12223222 2666666666
Q ss_pred CcEEEEEeccC-ChHHHhhhcCCC----CeeecCC-cccceeEEecCCCCc---chHHHHHHHHHHHHhcCCCCCEEEec
Q 009842 150 KLKILITSATL-DGEKVSKFFSNC----PTLNVPG-KLYPVEILHSKERPT---SYLESALKTAIDIHVREPEGDVLIFM 220 (524)
Q Consensus 150 ~~~ii~~SATl-~~~~~~~~~~~~----~~~~i~~-~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~iLVF~ 220 (524)
+.|.|++|||. +++.+++|+.+. .++.+.+ +...+++........ .........+.++.. ....+|||+
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~--~~~ttLIF~ 260 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVK--KHRTTLIFT 260 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHh--hcCcEEEEE
Confidence 89999999999 778899999654 4455544 444455544333211 112233344444332 234899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCc
Q 009842 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (524)
Q Consensus 221 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~ 300 (524)
||+..++.++..|.+.. ...+..|||+++.++|..+++.|++|+.+++|||+.+|-|||+.+|+.||+++-
T Consensus 261 NTR~~aE~l~~~L~~~~---------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 261 NTRSGAERLAFRLKKLG---------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred eChHHHHHHHHHHHHhc---------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCC
Confidence 99999999999999872 367888999999999999999999999999999999999999999999999886
Q ss_pred ccceeecCCCCccccceeeecHHhHHhhccccCCC
Q 009842 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 301 ~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 335 (524)
|+ |.+.+.||+||+|+.
T Consensus 332 P~------------------sV~r~lQRiGRsgHr 348 (814)
T COG1201 332 PK------------------SVNRFLQRIGRAGHR 348 (814)
T ss_pred cH------------------HHHHHhHhccccccc
Confidence 55 778899999999997
No 47
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=300.60 Aligned_cols=474 Identities=18% Similarity=0.192 Sum_probs=296.5
Q ss_pred HHHHH-HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC---------CCCcEEEEcccchhHHHHHHHHHHHHh---CCc
Q 009842 10 EETIV-ETVEQNPVVVVIGETGSGKSTQLSQILHRHGY---------TKSGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (524)
Q Consensus 10 ~~~i~-~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~---------~~~~~i~~~~P~r~la~~~~~~~~~~~---~~~ 76 (524)
|.++. .+.+.++|.+|+||||||||-++.+.++.... ..+-+++++.|.+++|.++++.+.+.+ |..
T Consensus 115 QS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~ 194 (1230)
T KOG0952|consen 115 QSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGIS 194 (1230)
T ss_pred HHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccce
Confidence 43333 34568999999999999999544444332211 134489999999999999999998776 466
Q ss_pred ccceEeEEeecccccCcccceeecchHHHHHHHH---h-CCCCCCCceEEEeCCCcCCCChH-HHHHHHHHHHh---hcc
Q 009842 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREIL---S-NPDLSPYSVIILDEAHERSLNTD-ILLGLVKRLVN---LRA 148 (524)
Q Consensus 77 ~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~---~-~~~l~~~~~iIiDE~H~~~~~~~-~~~~~l~~i~~---~~~ 148 (524)
+.+..|.. ......-..++|+++||+...-.-+ . ..+++.+.+|||||+|...-+.+ .+..++.+.++ ..-
T Consensus 195 v~ELTGD~-ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessq 273 (1230)
T KOG0952|consen 195 VRELTGDT-QLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQ 273 (1230)
T ss_pred EEEecCcc-hhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhh
Confidence 66666632 2222224679999999997642222 1 22788999999999996333333 34444444442 222
Q ss_pred cCcEEEEEeccCCh-HHHhhhcCCC---CeeecCCccc--ceeEEecCCCCc--ch-----HHHHHHHHHHHHhcCCCCC
Q 009842 149 SKLKILITSATLDG-EKVSKFFSNC---PTLNVPGKLY--PVEILHSKERPT--SY-----LESALKTAIDIHVREPEGD 215 (524)
Q Consensus 149 ~~~~ii~~SATl~~-~~~~~~~~~~---~~~~i~~~~~--~v~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~g~ 215 (524)
..+|+|++|||+|. ++++.|++.. .++.++++.. |.+..+...... .. -+.....+.+.+ ..+.+
T Consensus 274 s~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~q 351 (1230)
T KOG0952|consen 274 SMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQ 351 (1230)
T ss_pred hheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCe
Confidence 37899999999955 7899999863 3455565444 444433322211 11 112223333333 45679
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhcCCC------C-------CCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc
Q 009842 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEG------S-------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (524)
Q Consensus 216 iLVF~~~~~~~~~~~~~L~~~~~~~~~~------~-------~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i 282 (524)
++|||+++.++.+.|+.|.+.....+.. . +-..++..||+||..++|..+++.|..|.++|++||.+
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaT 431 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTAT 431 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecce
Confidence 9999999999999999998775432211 0 01145667999999999999999999999999999999
Q ss_pred cccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCchhhhhh--CcCC-
Q 009842 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHDE--FLDV- 356 (524)
Q Consensus 283 ~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~~--~~~~- 356 (524)
++.|+|+|+-.++|- | +..||+..|.. .-.+.....|..|||||. ..|..+.+.+.+..+.. +...
T Consensus 432 LAwGVNLPA~aViIK-G---T~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 432 LAWGVNLPAYAVIIK-G---TQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQ 503 (1230)
T ss_pred eeeccCCcceEEEec-C---CcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCC
Confidence 999999997766663 2 67888877532 123666778999999998 57888877766544321 2222
Q ss_pred --------------CCCcccccCchhHHHHHHhcCCC--------Ccccccc--cCCC-CCCH-----HHHHHHHHHHHH
Q 009842 357 --------------TVPEIQRSSLAGSVLYLKSLDLS--------DINVLKF--DFLD-PPSS-----ESLEDALKQLYL 406 (524)
Q Consensus 357 --------------~~pei~~~~l~~~~l~~~~~~~~--------~~~~~~~--~~~~-~p~~-----~~i~~al~~L~~ 406 (524)
-..||....+..+--.+..++.. ++-.... ..+. -|.. +-+..++..|..
T Consensus 504 ~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~ 583 (1230)
T KOG0952|consen 504 NPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDK 583 (1230)
T ss_pred ChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhh
Confidence 22233332222222222222111 0000000 1111 1211 122344455544
Q ss_pred cccc--cCCC---CCCHHhHhhccCCCChHHHHHHHHHhh-hCCHHHHHHHHHHhccCCcccCCCCchhHHHhh------
Q 009842 407 IDAI--DENG---SITSIGRTMAELPLEPSLSRMLMEANE-FGCLSQALTVAAMLSAETTLLPGRSKSTEKKRK------ 474 (524)
Q Consensus 407 ~g~l--~~~~---~lT~lG~~~~~lpl~p~~~~~l~~~~~-~~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~~------ 474 (524)
...+ |..+ ..|++||.++.+++..+..+.+..... +--.+++|.++|+-+.-+-.-...++.++.+..
T Consensus 584 ~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~ 663 (1230)
T KOG0952|consen 584 VQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCE 663 (1230)
T ss_pred hheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccc
Confidence 4333 3332 689999999999999999999999988 778899998888765544332222333333222
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHH
Q 009842 475 HTPLELPDGSGWGDHIQLLQIYEC 498 (524)
Q Consensus 475 ~~~~~~~~~~~~~D~~~~~~~~~~ 498 (524)
+..|. ...++.-.++..|..
T Consensus 664 ~~~~~----~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 664 KYPFG----GEKGKVNILLQAYIS 683 (1230)
T ss_pred ccccc----ccchhHHHHHHhhhh
Confidence 22232 235666666666543
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9e-35 Score=325.66 Aligned_cols=296 Identities=22% Similarity=0.194 Sum_probs=197.5
Q ss_pred EEcCCCCcHH--HHHHHHHHhcCC----------CCCcEEEEcccchhHHHHHHHHHHHH----------h-----CCcc
Q 009842 25 VIGETGSGKS--TQLSQILHRHGY----------TKSGIIGVTQPRRVAAVSVARRVAQE----------L-----GVRL 77 (524)
Q Consensus 25 i~~pTGsGKT--t~l~~~l~~~~~----------~~~~~i~~~~P~r~la~~~~~~~~~~----------~-----~~~~ 77 (524)
|++||||||| .++|.+...... ..+.+++++.|+++++.|+.+++... + +..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 445443332211 13468999999999999999887431 1 2223
Q ss_pred cceEeEEeeccc--ccCcccceeecchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCh--H-HHHHHHHHHHhhcccC
Q 009842 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNT--D-ILLGLVKRLVNLRASK 150 (524)
Q Consensus 78 ~~~vg~~~~~~~--~~~~~~~i~~~T~g~l~~~l~~~--~~l~~~~~iIiDE~H~~~~~~--~-~~~~~l~~i~~~~~~~ 150 (524)
+...|.....+. ......+|+++||+.+..++.+. ..++++++|||||+|+. .+. + .+...+.++....+.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L-~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAV-AGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHh-cccccccHHHHHHHHHHHhCCCC
Confidence 233332111111 11245799999999998876543 37999999999999953 332 2 2334466666665557
Q ss_pred cEEEEEeccC-ChHHHhhhcCCC-CeeecC---CcccceeEEecCCCCcch---------------HH----HHHHHHHH
Q 009842 151 LKILITSATL-DGEKVSKFFSNC-PTLNVP---GKLYPVEILHSKERPTSY---------------LE----SALKTAID 206 (524)
Q Consensus 151 ~~ii~~SATl-~~~~~~~~~~~~-~~~~i~---~~~~~v~~~~~~~~~~~~---------------~~----~~~~~~~~ 206 (524)
.|+|++|||+ |.+.+++|++.. ++..+. .+..++++........+. .. .....++.
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 9999999999 557889999753 332221 122333332211110000 00 01111222
Q ss_pred HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcC----------------CC-------CCCCeEEEEecCCCCHHHHh
Q 009842 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQV 263 (524)
Q Consensus 207 ~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~----------------~~-------~~~~~~v~~lh~~l~~~~r~ 263 (524)
.. ...+++||||||++.++.++..|.+...... .+ ......+..|||+|++++|.
T Consensus 240 ~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 240 EV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 21 2357899999999999999999987532100 00 00123467899999999999
Q ss_pred cccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCC--CeEE
Q 009842 264 RVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP--GKCY 341 (524)
Q Consensus 264 ~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~--G~~~ 341 (524)
.+++.|++|.+++||||+++|.||||++|++||++|.|+ |.++|+||+|||||... +.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~------------------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL------------------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC------------------CHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999988654 88899999999999733 3444
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-34 Score=295.80 Aligned_cols=304 Identities=19% Similarity=0.166 Sum_probs=217.7
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEe
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~ 85 (524)
.-|+++++.+.++++++++-|||+||| +|+|.++. .+.++++.|..++...+.+.+ +..|......-+...
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l-~~~Gi~A~~lnS~l~ 92 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQL-EAAGIRAAYLNSTLS 92 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHH-HHcCceeehhhcccC
Confidence 347899999999999999999999999 89998876 347889999999988887776 334433221111001
Q ss_pred ecc------cccCcccceeecchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCh-HHHHHH--HHHHHhhcccCcEEEE
Q 009842 86 RFE------DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNT-DILLGL--VKRLVNLRASKLKILI 155 (524)
Q Consensus 86 ~~~------~~~~~~~~i~~~T~g~l~~~l~~~-~~l~~~~~iIiDE~H~~~~~~-~~~~~~--l~~i~~~~~~~~~ii~ 155 (524)
..+ .......+++|.+|+.+..--..+ -.-.++++++|||||+.+-+. ||..++ +..+....+ ++++++
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~A 171 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLA 171 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEE
Confidence 111 111235789999999876432111 125678999999999966554 343332 445555555 889999
Q ss_pred EeccCChHH---HhhhcC-CCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 009842 156 TSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (524)
Q Consensus 156 ~SATl~~~~---~~~~~~-~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~ 231 (524)
+|||.++.. +.+.++ +.+.+.+.+-. --++.|.-....+...+. ..+.. ......+..||||.|++.++.+++
T Consensus 172 lTATA~~~v~~DI~~~L~l~~~~~~~~sfd-RpNi~~~v~~~~~~~~q~-~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQDANIFRGSFD-RPNLALKVVEKGEPSDQL-AFLAT-VLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCCcceEEecCC-CchhhhhhhhcccHHHHH-HHHHh-hccccCCCeEEEEeeHHhHHHHHH
Confidence 999998753 333333 22222221111 111222211111111111 11111 234566789999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCC
Q 009842 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (524)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~ 311 (524)
.|... ++.+..+||||+.++|..+.+.|.++..+|+|||+++++|||.|||++||++++|+
T Consensus 249 ~L~~~----------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~--------- 309 (590)
T COG0514 249 WLRKN----------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG--------- 309 (590)
T ss_pred HHHHC----------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC---------
Confidence 99986 88999999999999999999999999999999999999999999999999999877
Q ss_pred ccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 312 ~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
|.++|.|.+|||||. .+..|+.||++.+..
T Consensus 310 ---------s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 310 ---------SIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ---------CHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 888999999999999 789999999988854
No 50
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=285.46 Aligned_cols=303 Identities=17% Similarity=0.164 Sum_probs=219.5
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC--------C--CCcEEEEcccchhHHHHHHHHHHHHhCCc
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY--------T--KSGIIGVTQPRRVAAVSVARRVAQELGVR 76 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~--------~--~~~~i~~~~P~r~la~~~~~~~~~~~~~~ 76 (524)
+|+--+..+..|..++.+|+|||||| .++|.+-..... . ....++++.|||+++.|++.+..+..+..
T Consensus 100 vQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s 179 (482)
T KOG0335|consen 100 VQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS 179 (482)
T ss_pred ceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc
Confidence 45556677889999999999999999 555554432211 1 13578999999999999999887665543
Q ss_pred ccc-eEeEEee----cccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCC-hHHHHHHHHHHHhhcc-
Q 009842 77 LGE-EVGYAIR----FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRA- 148 (524)
Q Consensus 77 ~~~-~vg~~~~----~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~-~~~~~~~l~~i~~~~~- 148 (524)
... .+.|.-. ........++|+++|||.|...+.... .++++.++|+|||+ +++| .+|... +++++....
T Consensus 180 ~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~-Ir~iv~~~~~ 257 (482)
T KOG0335|consen 180 GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQ-IRKIVEQLGM 257 (482)
T ss_pred cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-Hhhhhcccccc-HHHHhcccCC
Confidence 322 2223221 122234679999999999999885544 89999999999999 8888 666555 666665543
Q ss_pred ---cCcEEEEEeccCChHH--Hhhhc-CC-CCeeec---CCcccceeEEecCCCCcchHHHHHHHHHHHHhcC----CCC
Q 009842 149 ---SKLKILITSATLDGEK--VSKFF-SN-CPTLNV---PGKLYPVEILHSKERPTSYLESALKTAIDIHVRE----PEG 214 (524)
Q Consensus 149 ---~~~~ii~~SATl~~~~--~~~~~-~~-~~~~~i---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g 214 (524)
+..|.+++|||.+.+. +..+| .+ ...+.+ .+....+.......... .....+++++... ..+
T Consensus 258 ~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~----~kr~~Lldll~~~~~~~~~~ 333 (482)
T KOG0335|consen 258 PPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEM----EKRSKLLDLLNKDDGPPSDG 333 (482)
T ss_pred CCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecch----hhHHHHHHHhhcccCCcccC
Confidence 3679999999997642 33333 22 222222 12211221111111111 1223333333322 234
Q ss_pred -----CEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCC
Q 009842 215 -----DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (524)
Q Consensus 215 -----~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidi 289 (524)
.++|||.+++.+..++..|... ++....+||.-++.+|.+.++.|++|...|+|||+++++|+||
T Consensus 334 ~~~~e~tlvFvEt~~~~d~l~~~l~~~----------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi 403 (482)
T KOG0335|consen 334 EPKWEKTLVFVETKRGADELAAFLSSN----------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDI 403 (482)
T ss_pred CcccceEEEEeeccchhhHHHHHHhcC----------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCC
Confidence 7999999999999999999876 8888999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecC
Q 009842 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (524)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 345 (524)
|+|++||++++|. ...+|+||+||+||. ..|.+..|+.
T Consensus 404 ~~V~hVInyDmP~------------------d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 404 PNVKHVINYDMPA------------------DIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred CCCceeEEeecCc------------------chhhHHHhccccccCCCCceeEEEec
Confidence 9999999998877 455899999999999 6789999987
No 51
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-34 Score=267.69 Aligned_cols=315 Identities=19% Similarity=0.203 Sum_probs=237.4
Q ss_pred HHHHHHHHhc--cCCEEEEEcCCCCcHHH-HHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEE
Q 009842 9 YEETIVETVE--QNPVVVVIGETGSGKST-QLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 9 ~~~~i~~~l~--~~~~~ii~~pTGsGKTt-~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~ 84 (524)
.|+..+..+. ..++++..+.+|+|||+ ++..++..... ......+|+.|+|.+|.|..+-+ +++|...+....|.
T Consensus 116 IQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~ya 194 (477)
T KOG0332|consen 116 IQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTASYA 194 (477)
T ss_pred HHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEEEE
Confidence 3444444443 56889999999999994 44334433322 23447788899999999988766 67777767777787
Q ss_pred eecccccC---cccceeecchHHHHHHHHh--CCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 85 IRFEDRTS---ERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 85 ~~~~~~~~---~~~~i~~~T~g~l~~~l~~--~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
++...... -..+|++.|||.++.++.. .-.+.++.++|+|||+ .++++.-+...--++.+..|.+.|++++|||
T Consensus 195 ir~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 195 IRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred ecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeech
Confidence 77653332 3478999999999999865 3378999999999999 6776654444445566666779999999999
Q ss_pred CChH--HHh-hhcCCCCeeecCCc---ccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 009842 160 LDGE--KVS-KFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (524)
Q Consensus 160 l~~~--~~~-~~~~~~~~~~i~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L 233 (524)
.... .|+ ....++..+.+..+ ..++..+|......+ ..+..+.++...-.-|+.+|||.|+..+..++..+
T Consensus 274 f~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~---~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m 350 (477)
T KOG0332|consen 274 FVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRD---DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEM 350 (477)
T ss_pred hHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchh---hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHH
Confidence 9643 233 45566666666543 345555555544433 33444444554455689999999999999999999
Q ss_pred HHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcc
Q 009842 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~ 313 (524)
... |..|..+||.|.-++|..+.+.|+.|.-+|+|+||+.++|||++.|.+|||+++|-...-.
T Consensus 351 ~~~----------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~------ 414 (477)
T KOG0332|consen 351 RAE----------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGE------ 414 (477)
T ss_pred Hhc----------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCC------
Confidence 887 8899999999999999999999999999999999999999999999999999998632211
Q ss_pred ccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhh
Q 009842 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 350 (524)
-..+.|.||+||+||. +.|.++.|...++-.
T Consensus 415 ------pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 415 ------PDYETYLHRIGRTGRFGKKGLAINLVDDKDSM 446 (477)
T ss_pred ------CCHHHHHHHhcccccccccceEEEeecccCcH
Confidence 3678999999999999 789999987554443
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-33 Score=271.95 Aligned_cols=324 Identities=20% Similarity=0.229 Sum_probs=221.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
+....||..|.+....+ +++++.|||=|||+.+...+.......+++++++.||+-++.|.++.+.+.++......+..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l 92 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL 92 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee
Confidence 45567898888877666 77888999999997776666643333344999999999999999999999999876654432
Q ss_pred E--eeccccc--CcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009842 84 A--IRFEDRT--SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 84 ~--~~~~~~~--~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
. ++.+.+. -.+.+|.++||..+.+-+.... .+.+++++|+|||| |.......-.+.+..++... ++.+++|||
T Consensus 93 tGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k-~~~ilgLTA 170 (542)
T COG1111 93 TGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAK-NPLILGLTA 170 (542)
T ss_pred cCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhcc-CceEEEEec
Confidence 2 2222111 2468999999999988886655 89999999999999 77666555566677776665 889999999
Q ss_pred cCC--hHHHhhhcCCCCe----eecCC----c--ccceeEEecCCCC---------------------------------
Q 009842 159 TLD--GEKVSKFFSNCPT----LNVPG----K--LYPVEILHSKERP--------------------------------- 193 (524)
Q Consensus 159 Tl~--~~~~~~~~~~~~~----~~i~~----~--~~~v~~~~~~~~~--------------------------------- 193 (524)
|+. .+.+++...+--+ +..+. + ...+++.+.....
T Consensus 171 SPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 171 SPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred CCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 993 3445544432111 11000 0 0111111111100
Q ss_pred ---cc-------------------------------------------------hHH-----------------------
Q 009842 194 ---TS-------------------------------------------------YLE----------------------- 198 (524)
Q Consensus 194 ---~~-------------------------------------------------~~~----------------------- 198 (524)
.+ |+.
T Consensus 251 ~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~ 330 (542)
T COG1111 251 VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYF 330 (542)
T ss_pred ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhh
Confidence 00 000
Q ss_pred -HHHH-------------------HHH-HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCC
Q 009842 199 -SALK-------------------TAI-DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSL 257 (524)
Q Consensus 199 -~~~~-------------------~~~-~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l 257 (524)
.++. .++ ......++.++|||.+-|+.++.+.+.|.+...... -..-|-.-.-...||
T Consensus 331 ~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GM 409 (542)
T COG1111 331 KRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGM 409 (542)
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeecccccccccc
Confidence 0000 000 011123446899999999999999999988732110 000000001133589
Q ss_pred CHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCC
Q 009842 258 PPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP 337 (524)
Q Consensus 258 ~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 337 (524)
++.+|.++++.|++|..+|||||+++|.|+|||++++||- |+|. -|..-++||.||+||.++
T Consensus 410 sQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpv----------pSeIR~IQR~GRTGR~r~ 471 (542)
T COG1111 410 SQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPV----------PSEIRSIQRKGRTGRKRK 471 (542)
T ss_pred CHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCC----------cHHHHHHHhhCccccCCC
Confidence 9999999999999999999999999999999999999996 3332 266678999999999999
Q ss_pred CeEEEecCchhh
Q 009842 338 GKCYRLYPSTVY 349 (524)
Q Consensus 338 G~~~~l~~~~~~ 349 (524)
|.+|.|.++..-
T Consensus 472 Grv~vLvt~gtr 483 (542)
T COG1111 472 GRVVVLVTEGTR 483 (542)
T ss_pred CeEEEEEecCch
Confidence 999999988743
No 53
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=275.71 Aligned_cols=340 Identities=19% Similarity=0.205 Sum_probs=236.2
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcC------CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~------~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~ 79 (524)
..|++.+..+.+|++++|.++|||||| +++|.+-.... ...|...++++|||+++.|+++.+.+......+.
T Consensus 162 sVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWI 241 (708)
T KOG0348|consen 162 SVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWI 241 (708)
T ss_pred hHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEE
Confidence 456667777888999999999999999 55555433222 1345688999999999999999998887766666
Q ss_pred eEeEEeecccccC------cccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc----
Q 009842 80 EVGYAIRFEDRTS------ERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR---- 147 (524)
Q Consensus 80 ~vg~~~~~~~~~~------~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~---- 147 (524)
..|+-+..+.+.+ .+.+|++.|||+|++.+.+.. .++++.++|+||++ |.++.+|-.. +..|++..
T Consensus 242 VPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekd-it~Il~~v~~~~ 319 (708)
T KOG0348|consen 242 VPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKD-ITQILKAVHSIQ 319 (708)
T ss_pred eeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhh-HHHHHHHHhhcc
Confidence 6677676766654 467899999999999997765 68899999999999 7887777443 22222221
Q ss_pred ---------ccCcEEEEEeccCChH--HHhhhc-CCCCeeecCCcc-------------------cce---------eEE
Q 009842 148 ---------ASKLKILITSATLDGE--KVSKFF-SNCPTLNVPGKL-------------------YPV---------EIL 187 (524)
Q Consensus 148 ---------~~~~~ii~~SATl~~~--~~~~~~-~~~~~~~i~~~~-------------------~~v---------~~~ 187 (524)
|...+-+++|||+... .+++.- .++..+..+... .++ ..+
T Consensus 320 ~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qr 399 (708)
T KOG0348|consen 320 NAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQR 399 (708)
T ss_pred chhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhc
Confidence 1136778999999643 344332 222222211000 000 111
Q ss_pred ecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCC--------C----CCCCeEEEEecC
Q 009842 188 HSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE--------G----SCMDAVILPLHG 255 (524)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~--------~----~~~~~~v~~lh~ 255 (524)
|...++.--+-.....+.+.....+..+++||+.+.+.++--++.+........+ + -..+..++-+||
T Consensus 400 y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG 479 (708)
T KOG0348|consen 400 YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG 479 (708)
T ss_pred eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecC
Confidence 2222222223333444555555566678999999999999988888776543100 0 113567899999
Q ss_pred CCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC
Q 009842 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 256 ~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 335 (524)
+|++++|..+|+.|......|++|||++++|+|+|+|++||+++- |-|.++|+||+||+.|.
T Consensus 480 sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~------------------P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 480 SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP------------------PFSTADYLHRVGRTARA 541 (708)
T ss_pred chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC------------------CCCHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999998553 45889999999999998
Q ss_pred -CCCeEEEec--CchhhhhhCcCCCCCcccccCchh
Q 009842 336 -RPGKCYRLY--PSTVYHDEFLDVTVPEIQRSSLAG 368 (524)
Q Consensus 336 -~~G~~~~l~--~~~~~~~~~~~~~~pei~~~~l~~ 368 (524)
..|....+. ++.+|.+ ......+.+...++..
T Consensus 542 G~kG~alLfL~P~Eaey~~-~l~~~~~~l~q~~~~~ 576 (708)
T KOG0348|consen 542 GEKGEALLFLLPSEAEYVN-YLKKHHIMLLQFDMEI 576 (708)
T ss_pred cCCCceEEEecccHHHHHH-HHHhhcchhhccchhh
Confidence 567665544 5666666 3333333344444443
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.7e-33 Score=306.19 Aligned_cols=299 Identities=18% Similarity=0.192 Sum_probs=204.9
Q ss_pred chHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCC---c
Q 009842 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (524)
Q Consensus 6 i~~~~~~i~~~l~~~------~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~---~ 76 (524)
..+.|.+.++.+.++ .+.+++||||||||..+...+.... ..+.+++++.||++++.|+++.+.+.++. .
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al-~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV-LDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH-HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 356777777777664 6889999999999933322222211 23578999999999999999988776542 2
Q ss_pred ccceEeEEeeccc------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 77 LGEEVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 77 ~~~~vg~~~~~~~------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
+....|.....+. ....+.+|+++||.. +.....+.+++++||||+|.. ... .+..+...+.+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahrf--gv~-----~~~~L~~~~~~ 599 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQRF--GVK-----QKEKLKELRTS 599 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeeccccc--chh-----HHHHHHhcCCC
Confidence 2222221110010 012357899999943 334457899999999999942 111 12223333447
Q ss_pred cEEEEEeccCChHHHhhhc-C--CCCeeecC-CcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 151 LKILITSATLDGEKVSKFF-S--NCPTLNVP-GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 151 ~~ii~~SATl~~~~~~~~~-~--~~~~~~i~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
.++++||||+.+..+...+ + +..++..+ ....+++.++..... ..+.. .+.... ..+++++||||+++++
T Consensus 600 ~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~---~i~~el--~~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVRE---AIRREL--LRGGQVFYVHNRIESI 673 (926)
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHH---HHHHHH--HcCCeEEEEECCcHHH
Confidence 8999999998776544322 2 22233322 223466655443221 11111 111111 2468999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
+.+++.|.+.. ++..+..+||+|++++|.++++.|++|+.+|||||+++|+|||+|++++||..+.++
T Consensus 674 e~l~~~L~~~~--------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~---- 741 (926)
T TIGR00580 674 EKLATQLRELV--------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK---- 741 (926)
T ss_pred HHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC----
Confidence 99999998763 467899999999999999999999999999999999999999999999999744322
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
.+.+++.||+||+||. +.|.||.++++.
T Consensus 742 -------------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 742 -------------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred -------------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 1345789999999998 789999998654
No 55
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-34 Score=268.14 Aligned_cols=308 Identities=20% Similarity=0.227 Sum_probs=230.0
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC------CCCcEEEEcccchhHHHHHHHHHHHHh--CCcccc
Q 009842 10 EETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY------TKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGE 79 (524)
Q Consensus 10 ~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~------~~~~~i~~~~P~r~la~~~~~~~~~~~--~~~~~~ 79 (524)
|.+.+.-+.+|.+++.+|.||+||| .++|-++..... ..+..+++..|++.++.++.-.+.++. |.....
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 4456777889999999999999999 555555543221 234578999999999999876665432 333223
Q ss_pred eEeEEeeccc--ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009842 80 EVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 80 ~vg~~~~~~~--~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (524)
..|...+.+. .......|+++|||.|..+...+. .+..+.++|+|||+ ++++++|-..+-+.++..+| +.+.++.
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRP-DRqtvmT 404 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRP-DRQTVMT 404 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCC-cceeeee
Confidence 3332223222 234678999999999998887665 89999999999999 99999998887777888888 9999999
Q ss_pred eccCChH---HHhhhcCCCCeeecCCcc-----cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 009842 157 SATLDGE---KVSKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (524)
Q Consensus 157 SATl~~~---~~~~~~~~~~~~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~ 228 (524)
|||.|.. ....|+.++ ++...|.. ..|+..+.-....+.. ..+...+.- .....++||||..+..+..
T Consensus 405 SATWP~~VrrLa~sY~Kep-~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~--ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEP-MIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVAN--MSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred cccCchHHHHHHHHhhhCc-eEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHh--cCCCceEEEEEechhhhhh
Confidence 9999874 244676554 43333432 2233333222222222 222222222 2455699999999988877
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC
Q 009842 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (524)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~ 308 (524)
+..-|.- .++....+||+-.+.+|+..++.|+.|.++|||||+++++|+|+|||++|+++++|.
T Consensus 481 LSSd~~l----------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~------ 544 (629)
T KOG0336|consen 481 LSSDFCL----------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR------ 544 (629)
T ss_pred ccchhhh----------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc------
Confidence 7665543 378888899999999999999999999999999999999999999999999999877
Q ss_pred CCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 309 ~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
...+|+||.||+||+ +.|..+.+++..++..
T Consensus 545 ------------nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 545 ------------NIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred ------------cHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 566999999999999 7899999999888754
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=7.4e-33 Score=298.94 Aligned_cols=299 Identities=16% Similarity=0.197 Sum_probs=204.3
Q ss_pred CCchHHHHHHHHHhccC------CEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh---
Q 009842 4 LPILQYEETIVETVEQN------PVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~------~~~ii~~pTGsGKTt~-l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~--- 73 (524)
+.....|++.+..+..+ .+.+++||||||||.. +..++... ..+.+++++.|+++++.|+++.+.+.+
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 45678888888888776 4789999999999932 22222222 246689999999999999999887654
Q ss_pred CCcccceEeEEeecc------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 74 GVRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 74 ~~~~~~~vg~~~~~~------~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
+..++...|.....+ .....+.+|+++|++.+.. ...+.+++++|+||+|.. ..... ..+. ..
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrf--g~~qr----~~l~-~~ 406 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRF--GVEQR----LALR-EK 406 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhh--hHHHH----HHHH-hc
Confidence 344444444211100 1123468999999986642 235789999999999942 11111 1122 22
Q ss_pred ccCcEEEEEeccCChHHHh-hhcCCCCeeec---CCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 009842 148 ASKLKILITSATLDGEKVS-KFFSNCPTLNV---PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (524)
Q Consensus 148 ~~~~~ii~~SATl~~~~~~-~~~~~~~~~~i---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~ 223 (524)
....++++||||+.+..+. ..++...+..+ +....|+...+...... ...+..+.... ..+++++||||..
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g~q~~v~~~~i 481 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI--AKGRQAYVVCPLI 481 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcCCcEEEEEccc
Confidence 3368899999998665433 33444333222 22234555554443222 22223332222 3457999999965
Q ss_pred H--------HHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEE
Q 009842 224 D--------DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 224 ~--------~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~V 295 (524)
+ .++.+++.|.+.+ +++.+..+||+|++++|+.+++.|++|+.+|||||+++|+|||+|++++|
T Consensus 482 e~s~~l~~~~~~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 482 EESEKLDLQSAEETYEELQEAF--------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred ccccchhHHHHHHHHHHHHHHC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 4 4556666666542 24678899999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecC
Q 009842 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 345 (524)
|+++.++ .+.+++.||+||+||. .+|.||.+++
T Consensus 554 Ii~~~~r-----------------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAER-----------------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCC-----------------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9866533 1346789999999998 6899999985
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.4e-32 Score=293.14 Aligned_cols=301 Identities=15% Similarity=0.168 Sum_probs=200.4
Q ss_pred CchHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC---C
Q 009842 5 PILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~------~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~---~ 75 (524)
.....|++.+..+..+ .+.+++||||||||......+.... ..+.+++++.|+++++.|+++.+.+.++ .
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~-~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi 313 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI-EAGYQVALMAPTEILAEQHYNSLRNLLAPLGI 313 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEECCHHHHHHHHHHHHHHHhcccCc
Confidence 3567788888777654 3679999999999943322222211 2366899999999999999998876553 4
Q ss_pred cccceEeEEeecc------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 76 RLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 76 ~~~~~vg~~~~~~------~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
.+....|.....+ .....+.+|+++|++.+.. ...+.++++|||||+|..+ ...... +....... .
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg--~~qr~~-l~~~~~~~-~ 385 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFG--VEQRKK-LREKGQGG-F 385 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhcc--HHHHHH-HHHhcccC-C
Confidence 4444444211100 1123457999999987643 3467899999999999422 221111 21111111 1
Q ss_pred CcEEEEEeccCChHHHh-hhcCCCCee---ecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH-
Q 009842 150 KLKILITSATLDGEKVS-KFFSNCPTL---NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD- 224 (524)
Q Consensus 150 ~~~ii~~SATl~~~~~~-~~~~~~~~~---~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~- 224 (524)
..++++||||+.+..+. ..++..... ..+....|+...+...... ...+..+.... ..+.+++||||..+
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQAYVVYPLIEE 460 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcEEEEEccccc
Confidence 57899999998665433 222322221 2232334565555433221 22222222211 34578999999764
Q ss_pred -------HHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEe
Q 009842 225 -------DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (524)
Q Consensus 225 -------~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId 297 (524)
.++.+++.|.+.+ ++..+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||.
T Consensus 461 s~~~~~~~a~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi 532 (630)
T TIGR00643 461 SEKLDLKAAEALYERLKKAF--------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI 532 (630)
T ss_pred cccchHHHHHHHHHHHHhhC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE
Confidence 4556666666542 3678899999999999999999999999999999999999999999999998
Q ss_pred CCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEec
Q 009842 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (524)
Q Consensus 298 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 344 (524)
.+.++ .+.+++.||+||+||. .+|.||.++
T Consensus 533 ~~~~r-----------------~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 533 EDAER-----------------FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eCCCc-----------------CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 65433 2456889999999998 689999998
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.2e-32 Score=276.72 Aligned_cols=291 Identities=20% Similarity=0.213 Sum_probs=185.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEe------e-----ccc
Q 009842 22 VVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI------R-----FED 89 (524)
Q Consensus 22 ~~ii~~pTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~------~-----~~~ 89 (524)
+++|.||||||||.....++... ....+.+++++.|+++++.|+++++.+.++..++...|... . .+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47899999999995544444432 22345689999999999999999998887754443322110 0 000
Q ss_pred ------c---cCcccceeecchHHHHHHHHhCC-------CCCCCceEEEeCCCcCCCCh--HHHHHHHHHHHhhcccCc
Q 009842 90 ------R---TSERTLIKYLTDGVLLREILSNP-------DLSPYSVIILDEAHERSLNT--DILLGLVKRLVNLRASKL 151 (524)
Q Consensus 90 ------~---~~~~~~i~~~T~g~l~~~l~~~~-------~l~~~~~iIiDE~H~~~~~~--~~~~~~l~~i~~~~~~~~ 151 (524)
. .....+|+++|++.+...+.... ..-..++||+||+|. ..+. +.+..+++.+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~l~~~l~~l~---~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF-YDEYTLALILAVLEVLK---DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC-CCHHHHHHHHHHHHHHH---HcCC
Confidence 0 01236799999999987776521 111238999999994 3332 22333333322 2378
Q ss_pred EEEEEeccCChHHHhhhcCCCCeeecCC--cccc---eeEEec--CCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 009842 152 KILITSATLDGEKVSKFFSNCPTLNVPG--KLYP---VEILHS--KERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (524)
Q Consensus 152 ~ii~~SATl~~~~~~~~~~~~~~~~i~~--~~~~---v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~ 224 (524)
++++||||++ +.+.+++.......... ...+ ...+.. ..............++.. ...++++||||++++
T Consensus 157 ~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lVf~~t~~ 233 (358)
T TIGR01587 157 PILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEF--IKKGGKIAIIVNTVD 233 (358)
T ss_pred CEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHH--hhCCCeEEEEECCHH
Confidence 9999999997 44555553321111000 0000 000000 000000111122222222 234679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhc----ccCCCCCCceEEEEecCccccccCCCCeeEEEeCCc
Q 009842 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVR----VFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (524)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~ 300 (524)
+++.+++.|.+.. ....+..+||++++.+|.+ +++.|++|..+|||||+++|+|+|+| +++||+.
T Consensus 234 ~~~~~~~~L~~~~--------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~-- 302 (358)
T TIGR01587 234 RAQEFYQQLKENA--------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE-- 302 (358)
T ss_pred HHHHHHHHHHhhc--------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc--
Confidence 9999999998762 2346889999999999976 48899999999999999999999997 6777752
Q ss_pred ccceeecCCCCccccceeeecHHhHHhhccccCCCC--C---CeEEEecCchh
Q 009842 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR--P---GKCYRLYPSTV 348 (524)
Q Consensus 301 ~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~--~---G~~~~l~~~~~ 348 (524)
+.+..+|+||+||+||.+ . |.+|.++...+
T Consensus 303 ------------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 303 ------------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ------------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 234678999999999972 2 37777765443
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-32 Score=306.57 Aligned_cols=298 Identities=17% Similarity=0.179 Sum_probs=202.5
Q ss_pred chHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCC---c
Q 009842 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (524)
Q Consensus 6 i~~~~~~i~~~l~~~------~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~---~ 76 (524)
....|.+.+..+..+ .+++++|+||||||..+...+... ...+.+++++.|+++++.|+++.+.+.++. .
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 456777777777766 789999999999994332222211 124678999999999999999988765542 2
Q ss_pred ccceEeEEeecccc------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 77 LGEEVGYAIRFEDR------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 77 ~~~~vg~~~~~~~~------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
+....|.....+.. .....+|+++||+.+ .....+.+++++||||+|.. .... +..++..+.+
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrf--G~~~-----~e~lk~l~~~ 748 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRF--GVRH-----KERIKAMRAD 748 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhc--chhH-----HHHHHhcCCC
Confidence 22222211111111 123578999999643 23346789999999999942 1111 2223334458
Q ss_pred cEEEEEeccCChHHHh---hhcCCCCeeecCC-cccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 151 LKILITSATLDGEKVS---KFFSNCPTLNVPG-KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 151 ~~ii~~SATl~~~~~~---~~~~~~~~~~i~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
.++++||||+.+..+. ..+.+..++..+. ...+++......... .. ...+.... ..+|+++||||+++.+
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~---k~~il~el--~r~gqv~vf~n~i~~i 822 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VV---REAILREI--LRGGQVYYLYNDVENI 822 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcH-HH---HHHHHHHH--hcCCeEEEEECCHHHH
Confidence 9999999998665433 2333444444332 224454443321111 11 11122211 2357999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
+.+++.|.+.+ ++..+..+||+|++++|.+++..|++|+.+|||||+++|+|||+|++++||...
T Consensus 823 e~la~~L~~~~--------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~------- 887 (1147)
T PRK10689 823 QKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER------- 887 (1147)
T ss_pred HHHHHHHHHhC--------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec-------
Confidence 99999998763 356788899999999999999999999999999999999999999999999311
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCc
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 346 (524)
+. ..+.++|.||+||+||. ..|.||.+++.
T Consensus 888 -ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 888 -AD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred -CC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 00 11335789999999999 78999998854
No 60
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=265.34 Aligned_cols=303 Identities=20% Similarity=0.241 Sum_probs=222.2
Q ss_pred HHHhccCCEEEEEcCCCCcHH--HHHHHHHHhc--------CCCCCcEEEEcccchhHHHHHHHHHHHHh------C---
Q 009842 14 VETVEQNPVVVVIGETGSGKS--TQLSQILHRH--------GYTKSGIIGVTQPRRVAAVSVARRVAQEL------G--- 74 (524)
Q Consensus 14 ~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~--------~~~~~~~i~~~~P~r~la~~~~~~~~~~~------~--- 74 (524)
+..+..|++.+-+|-|||||| ..+|.++... ....|..-++++|.|.+|.|.+.-+.+.. |
T Consensus 201 lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 201 LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 445678899999999999999 5556555422 12346688899999999999877654322 2
Q ss_pred CcccceEeEEeec---ccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 75 VRLGEEVGYAIRF---EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 75 ~~~~~~vg~~~~~---~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
.+....+| .+.. .+......+|+++|||+|..++.... .+.-+.++.+|||+ |+++.+|-.. ++.+....+..
T Consensus 281 lRs~LciG-G~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEdd-ir~iF~~FK~Q 357 (610)
T KOG0341|consen 281 LRSLLCIG-GVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDD-IRTIFSFFKGQ 357 (610)
T ss_pred hhhhhhhc-CccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhh-HHHHHHHHhhh
Confidence 12222333 1111 12234678999999999999886554 78888999999999 9999998777 78888877778
Q ss_pred cEEEEEeccCChHHHhhhcCC---CCe-eecCCcccceeEEecCCCCcchHHHHHHHHHH-HHhcCCCCCEEEecCcHHH
Q 009842 151 LKILITSATLDGEKVSKFFSN---CPT-LNVPGKLYPVEILHSKERPTSYLESALKTAID-IHVREPEGDVLIFMTGQDD 225 (524)
Q Consensus 151 ~~ii~~SATl~~~~~~~~~~~---~~~-~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~iLVF~~~~~~ 225 (524)
.|.+++|||+|.. ++.|-.. .|+ +++ ||.-..... -....+|+.+..+.+.- .+..+...++|||+..+.+
T Consensus 358 RQTLLFSATMP~K-IQ~FAkSALVKPvtvNV-GRAGAAsld--ViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~D 433 (610)
T KOG0341|consen 358 RQTLLFSATMPKK-IQNFAKSALVKPVTVNV-GRAGAASLD--VIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKAD 433 (610)
T ss_pred hheeeeeccccHH-HHHHHHhhcccceEEec-ccccccchh--HHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccC
Confidence 8999999999864 3333322 222 222 221111000 01123444433322221 1234556699999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccccee
Q 009842 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (524)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~ 305 (524)
+..+.++|.-. ++.+..+|||-.+++|...++.|+.|+-+|+|||++|+.|+|+|++.+|||+++|.
T Consensus 434 VD~IhEYLLlK----------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~--- 500 (610)
T KOG0341|consen 434 VDDIHEYLLLK----------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPE--- 500 (610)
T ss_pred hHHHHHHHHHc----------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChH---
Confidence 99999998765 89999999999999999999999999999999999999999999999999998866
Q ss_pred ecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 306 ~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
...+|+||+||+||. ..|.+-.++.+...+.
T Consensus 501 ---------------eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 501 ---------------EIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred ---------------HHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 566999999999999 7899999887776654
No 61
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=265.86 Aligned_cols=310 Identities=23% Similarity=0.283 Sum_probs=226.7
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhc-----CCCCCcEEEEcccchhHHHHHHHH---HHHHhCCcc
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH-----GYTKSGIIGVTQPRRVAAVSVARR---VAQELGVRL 77 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~-----~~~~~~~i~~~~P~r~la~~~~~~---~~~~~~~~~ 77 (524)
+.|.+++.....|.+++-+|.|||||| ...|.+.... ....+.+.++++|+|+++.|+... +.+-+|+.+
T Consensus 248 piq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~ 327 (731)
T KOG0339|consen 248 PIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRV 327 (731)
T ss_pred cccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceE
Confidence 345667777788999999999999999 3444443321 224466889999999999998654 445556665
Q ss_pred cceEeEEeecccc--cCcccceeecchHHHHHHHHh-CCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 78 GEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 78 ~~~vg~~~~~~~~--~~~~~~i~~~T~g~l~~~l~~-~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
....|.....+.. ....+.|+|||||+|+.+.-. ...+.+++++|+||++ |+.+.+|... ++.|......+.|.+
T Consensus 328 v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~q-VrSI~~hirpdrQtl 405 (731)
T KOG0339|consen 328 VAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQ-VRSIKQHIRPDRQTL 405 (731)
T ss_pred EEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHH-HHHHHhhcCCcceEE
Confidence 5555533333222 236789999999999999844 4489999999999999 8999998877 566655544599999
Q ss_pred EEeccCChH--HH-hhhcCCCCeeecCCcc----ccee-EEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 155 ITSATLDGE--KV-SKFFSNCPTLNVPGKL----YPVE-ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 155 ~~SATl~~~--~~-~~~~~~~~~~~i~~~~----~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
++|||+... .+ .+++.+ |+-.+.+.. ..+. +.+.......-+.- .+.++......|++|+|++-+..+
T Consensus 406 lFsaTf~~kIe~lard~L~d-pVrvVqg~vgean~dITQ~V~V~~s~~~Kl~w---l~~~L~~f~S~gkvlifVTKk~~~ 481 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSD-PVRVVQGEVGEANEDITQTVSVCPSEEKKLNW---LLRHLVEFSSEGKVLIFVTKKADA 481 (731)
T ss_pred EeeccchHHHHHHHHHHhcC-CeeEEEeehhccccchhheeeeccCcHHHHHH---HHHHhhhhccCCcEEEEEeccCCH
Confidence 999999653 33 455544 333222211 1111 11111111111111 111122234568999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
++++..|.-. ++.+..+||++.+.+|.+++..|+.+...|+++|+++++|+|||+++.||++++.+
T Consensus 482 e~i~a~Lklk----------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar---- 547 (731)
T KOG0339|consen 482 EEIAANLKLK----------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR---- 547 (731)
T ss_pred HHHHHHhccc----------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc----
Confidence 9999988665 89999999999999999999999999999999999999999999999999988766
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+...+.||+||+||. ..|..|.|.|+++-+.
T Consensus 548 --------------dIdththrigrtgRag~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 548 --------------DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF 579 (731)
T ss_pred --------------hhHHHHHHhhhcccccccceeeEEechhhHHH
Confidence 566888999999999 6799999999988653
No 62
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=274.25 Aligned_cols=306 Identities=23% Similarity=0.273 Sum_probs=210.4
Q ss_pred HHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCC------------CC--CcEEEEcccchhHHHHHHHHH---HHHhC
Q 009842 13 IVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY------------TK--SGIIGVTQPRRVAAVSVARRV---AQELG 74 (524)
Q Consensus 13 i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~------------~~--~~~i~~~~P~r~la~~~~~~~---~~~~~ 74 (524)
+..++....+++-.|.|||||| ++..+++..... .. ....+++.|||++|.|+.+.+ ++..+
T Consensus 212 lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~ 291 (731)
T KOG0347|consen 212 LPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ 291 (731)
T ss_pred ccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccC
Confidence 3444444488999999999999 443334431110 01 224789999999999998865 45556
Q ss_pred CcccceEeEEe--ecccccCcccceeecchHHHHHHHHhCC----CCCCCceEEEeCCCcCCCChHHHHH---HHHHHH-
Q 009842 75 VRLGEEVGYAI--RFEDRTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLG---LVKRLV- 144 (524)
Q Consensus 75 ~~~~~~vg~~~--~~~~~~~~~~~i~~~T~g~l~~~l~~~~----~l~~~~~iIiDE~H~~~~~~~~~~~---~l~~i~- 144 (524)
+.+...+|.-. ..+...+...+|+++|||+|..++..+. .+.+++++|+||++ |++.-+.+.+ +|+.+.
T Consensus 292 i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els~lL~~L~e 370 (731)
T KOG0347|consen 292 IRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELSKLLKHLNE 370 (731)
T ss_pred eEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHHHHHHHhhh
Confidence 66666666321 1222334578999999999999886544 68899999999999 8877665544 334333
Q ss_pred hhcccCcEEEEEeccCChHHHhhhcC-----------CCC------eeecCCcccceeEEecCCCCcchHHHHHHHHHHH
Q 009842 145 NLRASKLKILITSATLDGEKVSKFFS-----------NCP------TLNVPGKLYPVEILHSKERPTSYLESALKTAIDI 207 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~~~~~~~~~~-----------~~~------~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
...+...|.+++|||++-...+..-. +.+ .+.+.+. | .+.-. .+.........+..+..
T Consensus 371 ~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k--p-kiiD~-t~q~~ta~~l~Es~I~C 446 (731)
T KOG0347|consen 371 EQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK--P-KIIDL-TPQSATASTLTESLIEC 446 (731)
T ss_pred hhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCC--C-eeEec-CcchhHHHHHHHHhhcC
Confidence 12224679999999985322111000 000 0111111 1 11100 11111111111222111
Q ss_pred -----------HhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEE
Q 009842 208 -----------HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (524)
Q Consensus 208 -----------~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~i 276 (524)
....-+|.+|||||+.+.+.+++-.|... ++..+++|+.|.+.+|.+-++.|++..-.|
T Consensus 447 ~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L----------~i~p~~LHA~M~QKqRLknLEkF~~~~~~V 516 (731)
T KOG0347|consen 447 PPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL----------DIPPLPLHASMIQKQRLKNLEKFKQSPSGV 516 (731)
T ss_pred CccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc----------CCCCchhhHHHHHHHHHHhHHHHhcCCCeE
Confidence 12345799999999999999999998775 788899999999999999999999999999
Q ss_pred EEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 277 lvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
++|||+|++|+|||+|.+||+|-.|+ +...|+||.||+.|. ..|..+.|+.+.+...
T Consensus 517 LiaTDVAARGLDIp~V~HVIHYqVPr------------------tseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 517 LIATDVAARGLDIPGVQHVIHYQVPR------------------TSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred EEeehhhhccCCCCCcceEEEeecCC------------------ccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999988777 455788999999999 7899999998877544
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.5e-31 Score=284.38 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=186.1
Q ss_pred CchHHHHHHHHHhccCC-EEEEEcCCCCcHHHHHHHHHHhcCC--CCCcEEEEcccchhHHHHHHHHHHHHhC-------
Q 009842 5 PILQYEETIVETVEQNP-VVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELG------- 74 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~-~~ii~~pTGsGKTt~l~~~l~~~~~--~~~~~i~~~~P~r~la~~~~~~~~~~~~------- 74 (524)
.-+.+|++++..+..|+ ++++.+|||||||..+..++..... ....++++++|+|+++.|+++.+.+...
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~ 94 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPE 94 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccch
Confidence 35789999999999998 5777899999999543333332211 1233677788999999999887643221
Q ss_pred -------------------CcccceEeEEeecc---cccCcccceeecchHHHHHHHHhC-------------CCCCCCc
Q 009842 75 -------------------VRLGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSN-------------PDLSPYS 119 (524)
Q Consensus 75 -------------------~~~~~~vg~~~~~~---~~~~~~~~i~~~T~g~l~~~l~~~-------------~~l~~~~ 119 (524)
+.+...+|. ...+ .......+|+++|...+.+..+.. ..+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG-~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQ-FADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECC-CChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 112222231 1111 112345789999976554433210 1378899
Q ss_pred eEEEeCCCcCCCChHHHHHHHHHHHhhc--cc---CcEEEEEeccCChH--HHhhhcC-CCCeeecCCcccce-e-EEec
Q 009842 120 VIILDEAHERSLNTDILLGLVKRLVNLR--AS---KLKILITSATLDGE--KVSKFFS-NCPTLNVPGKLYPV-E-ILHS 189 (524)
Q Consensus 120 ~iIiDE~H~~~~~~~~~~~~l~~i~~~~--~~---~~~ii~~SATl~~~--~~~~~~~-~~~~~~i~~~~~~v-~-~~~~ 189 (524)
++|+|||| ++.+|... ++.+++.. +. +.|+++||||++.+ .+...+. +...+.+..+.... + .++.
T Consensus 174 ~LVLDEAD---Ld~gF~~~-l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v 249 (844)
T TIGR02621 174 LIVHDEAH---LEPAFQEL-LKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLV 249 (844)
T ss_pred EEEEehhh---hccccHHH-HHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEE
Confidence 99999999 44444433 55555532 22 26999999999754 2333332 33223332221111 1 1222
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHh-----c
Q 009842 190 KERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQV-----R 264 (524)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~-----~ 264 (524)
...........+..+.... ...++++||||||+++++.+++.|.+. ++ ..+||+|++.+|. +
T Consensus 250 ~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~----------g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 250 PPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE----------KF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred ecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc----------CC--eEeeCCCCHHHHhhHHHHH
Confidence 2121222222233322222 345679999999999999999999765 33 7799999999999 7
Q ss_pred ccCCCCC----Cc-------eEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccC
Q 009842 265 VFSPPPP----NC-------RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (524)
Q Consensus 265 v~~~f~~----g~-------~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 333 (524)
+++.|++ |. .+|||||+++|+||||+. ++||+.. .+.++|+||+||+|
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~--------------------aP~esyIQRiGRtg 375 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDL--------------------APFESMQQRFGRVN 375 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECC--------------------CCHHHHHHHhcccC
Confidence 7888876 43 689999999999999997 6666521 23579999999999
Q ss_pred CC
Q 009842 334 RT 335 (524)
Q Consensus 334 R~ 335 (524)
|.
T Consensus 376 R~ 377 (844)
T TIGR02621 376 RF 377 (844)
T ss_pred CC
Confidence 98
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.8e-32 Score=260.49 Aligned_cols=315 Identities=18% Similarity=0.166 Sum_probs=209.2
Q ss_pred hHHHHHHHHHh----c-----cCCEEEEEcCCCCcHH--HHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhC
Q 009842 7 LQYEETIVETV----E-----QNPVVVVIGETGSGKS--TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG 74 (524)
Q Consensus 7 ~~~~~~i~~~l----~-----~~~~~ii~~pTGsGKT--t~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~ 74 (524)
++.|.+++..+ . ..++++|.|||||||| +.+|..-..... ...-+.+++.|++.++.|++..+.+..
T Consensus 161 FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~- 239 (620)
T KOG0350|consen 161 FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLN- 239 (620)
T ss_pred cchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhc-
Confidence 34455555554 2 3678899999999999 444433332222 234588999999999999998875443
Q ss_pred CcccceEeEEeecccc-----------cCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHH
Q 009842 75 VRLGEEVGYAIRFEDR-----------TSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVK 141 (524)
Q Consensus 75 ~~~~~~vg~~~~~~~~-----------~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~ 141 (524)
...|..|+......+. .....+|+++|||+|.+++.+.+ .|+++.++|||||+ |.++..+.. ++.
T Consensus 240 ~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~-Wl~ 317 (620)
T KOG0350|consen 240 SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQE-WLD 317 (620)
T ss_pred cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHH-HHH
Confidence 3334444422221111 01235899999999999997655 79999999999999 776655421 111
Q ss_pred HHHhhcc----------------------------------cCcEEEEEeccC--ChHHHhhhcCCCC-eeecCCcccce
Q 009842 142 RLVNLRA----------------------------------SKLKILITSATL--DGEKVSKFFSNCP-TLNVPGKLYPV 184 (524)
Q Consensus 142 ~i~~~~~----------------------------------~~~~ii~~SATl--~~~~~~~~~~~~~-~~~i~~~~~~v 184 (524)
.++.... ..+.-+++|||+ ++..+.++--+.| .+.+.+. .
T Consensus 318 ~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~---~ 394 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP---L 394 (620)
T ss_pred HHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---c
Confidence 1111110 123356777877 5556665543333 3333321 0
Q ss_pred eEEecCCCC-cc-hH--H--HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCC
Q 009842 185 EILHSKERP-TS-YL--E--SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (524)
Q Consensus 185 ~~~~~~~~~-~~-~~--~--~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~ 258 (524)
-..|..... .. ++ + -....+..........++|+|+++.+.+.+++..|.-.+.. .+..+-.+.|+++
T Consensus 395 ~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~------~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 395 IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS------DNFKVSEFTGQLN 468 (620)
T ss_pred ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc------ccchhhhhhhhhh
Confidence 011111000 00 00 0 00111222223344569999999999999999999844332 3556667999999
Q ss_pred HHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CC
Q 009842 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RP 337 (524)
Q Consensus 259 ~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~ 337 (524)
.+.|.+.++.|..|.++|+||+|++++|||+.+|+.||+|+.|. +.-+|+||+||++|+ +.
T Consensus 469 ~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~------------------~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA------------------SDKTYVHRAGRTARAGQD 530 (620)
T ss_pred HHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc------------------hhhHHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999977644 777999999999999 78
Q ss_pred CeEEEecCchhhhh
Q 009842 338 GKCYRLYPSTVYHD 351 (524)
Q Consensus 338 G~~~~l~~~~~~~~ 351 (524)
|.||.+.++++...
T Consensus 531 G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 531 GYAITLLDKHEKRL 544 (620)
T ss_pred ceEEEeeccccchH
Confidence 99999997776544
No 65
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=8.1e-31 Score=270.80 Aligned_cols=320 Identities=22% Similarity=0.285 Sum_probs=210.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
++|+..||.+|.+... |++++|++|||+|||..+..++..+ .+..+++|++..|++-++.|+...+ ..++.. ....
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~-~~~T 136 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACF-SIYLIP-YSVT 136 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHH-hhccCc-ccce
Confidence 6899999999999888 9999999999999996665555543 3345689999999999999988544 444433 2222
Q ss_pred eEEeecccc-----cCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 82 GYAIRFEDR-----TSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 82 g~~~~~~~~-----~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
|........ .-...++.|+||..+.+-+.+.. .++.++++|||||| +.......-.+++..+.......|+|
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccEE
Confidence 211111111 11367899999999988875432 47889999999999 66555555555666665555355999
Q ss_pred EEeccCCh--HHHhhhcCCCCe-eec--------------CCcccceeE-------------------------------
Q 009842 155 ITSATLDG--EKVSKFFSNCPT-LNV--------------PGKLYPVEI------------------------------- 186 (524)
Q Consensus 155 ~~SATl~~--~~~~~~~~~~~~-~~i--------------~~~~~~v~~------------------------------- 186 (524)
++|||+.. +.+.++..+--. +.+ .-...|+++
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 99999953 233333321000 000 000011100
Q ss_pred ----EecC------------CCC-cc--h---------------------------------------------------
Q 009842 187 ----LHSK------------ERP-TS--Y--------------------------------------------------- 196 (524)
Q Consensus 187 ----~~~~------------~~~-~~--~--------------------------------------------------- 196 (524)
.|.. .+. .. +
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 0000 000 00 0
Q ss_pred ---------------------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEec-
Q 009842 197 ---------------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH- 254 (524)
Q Consensus 197 ---------------------~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh- 254 (524)
+....+.+.+.....+..++|||+.+|+.|..+...|..... . +..+.+-+..-+
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~-~--~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE-L--GIKAEIFIGQGKS 452 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh-c--ccccceeeecccc
Confidence 000001111112234456899999999999999999986321 1 001122222212
Q ss_pred ---CCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccc
Q 009842 255 ---GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGR 331 (524)
Q Consensus 255 ---~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GR 331 (524)
.+|++.+|+++++.|++|..+|||||+|+|.|+||+.++.||-||..- +...++||+||
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s------------------npIrmIQrrGR 514 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS------------------NPIRMVQRRGR 514 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc------------------cHHHHHHHhcc
Confidence 489999999999999999999999999999999999999999766422 45578899999
Q ss_pred cCCCCCCeEEEecCchh
Q 009842 332 AGRTRPGKCYRLYPSTV 348 (524)
Q Consensus 332 aGR~~~G~~~~l~~~~~ 348 (524)
||.+.|+|+.|++...
T Consensus 515 -gRa~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 515 -GRARNSKCVLLTTGSE 530 (746)
T ss_pred -ccccCCeEEEEEcchh
Confidence 9999999999998443
No 66
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-31 Score=255.92 Aligned_cols=308 Identities=18% Similarity=0.204 Sum_probs=221.8
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc-------CCCCCcEEEEcccchhHHHHHHHHHHHH---hC--C
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-------GYTKSGIIGVTQPRRVAAVSVARRVAQE---LG--V 75 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~-------~~~~~~~i~~~~P~r~la~~~~~~~~~~---~~--~ 75 (524)
.|+..+..+.+|++++..|.|||||| +++.+++... ....+...++++|+++++.|++..+.+. ++ .
T Consensus 45 IQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~l 124 (569)
T KOG0346|consen 45 IQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDL 124 (569)
T ss_pred hhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666677778999999999999999 4333333321 1123457889999999999998876433 22 1
Q ss_pred cccceEeEEee---cccccCcccceeecchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 76 RLGEEVGYAIR---FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 76 ~~~~~vg~~~~---~~~~~~~~~~i~~~T~g~l~~~l~~~~--~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
+...... ... .........+|+++||+.+++.+..+. .+..++++|+|||+ ..+..++-.. ++.+....|+.
T Consensus 125 r~~nl~s-~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeed-lk~l~~~LPr~ 201 (569)
T KOG0346|consen 125 RAINLAS-SMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEED-LKKLRSHLPRI 201 (569)
T ss_pred hhhhhhc-ccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHH-HHHHHHhCCch
Confidence 1111110 000 001223568999999999999998776 68899999999999 4555565555 77888888889
Q ss_pred cEEEEEeccCChH--HHhhhcCCCCee-ecCCcccc----eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 009842 151 LKILITSATLDGE--KVSKFFSNCPTL-NVPGKLYP----VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (524)
Q Consensus 151 ~~ii~~SATl~~~--~~~~~~~~~~~~-~i~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~ 223 (524)
.|.++||||++.+ .+...|-..|++ .+.....| +..++......+-+--. -.++ ...--.|++|||+|+.
T Consensus 202 ~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll-yall--KL~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 202 YQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL-YALL--KLRLIRGKSLIFVNTI 278 (569)
T ss_pred hhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH-HHHH--HHHHhcCceEEEEech
Confidence 9999999999654 577777665554 34332222 22233322222211111 1111 1223368999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc---------------------
Q 009842 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI--------------------- 282 (524)
Q Consensus 224 ~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i--------------------- 282 (524)
+.+.++.-.|+.. ++....+.|.||..-|.-+++.|..|..++|+|||.
T Consensus 279 dr~YrLkLfLeqF----------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 279 DRCYRLKLFLEQF----------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred hhhHHHHHHHHHh----------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCC
Confidence 9999999888887 888888999999999999999999999999999992
Q ss_pred --------------cccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009842 283 --------------AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 283 --------------~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
..+|||+.+|..|||+++|. +..+|+||+||++|. .+|.+..+..+.
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEEEecch
Confidence 24899999999999999877 556999999999999 899999888665
Q ss_pred hhh
Q 009842 348 VYH 350 (524)
Q Consensus 348 ~~~ 350 (524)
+..
T Consensus 411 e~~ 413 (569)
T KOG0346|consen 411 EEF 413 (569)
T ss_pred HHh
Confidence 543
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=2.6e-30 Score=259.18 Aligned_cols=285 Identities=15% Similarity=0.187 Sum_probs=180.6
Q ss_pred HHHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC-------Ccccc
Q 009842 9 YEETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-------VRLGE 79 (524)
Q Consensus 9 ~~~~i~~~l~~~~--~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~-------~~~~~ 79 (524)
+|.+.++++.+++ +++++||||||||......+.. .+...+++.|+++++.++++++.+.+. ..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 4778888888776 4889999999999433222222 234578889999999999998876652 11222
Q ss_pred eEeEEee----cc-------c-----------ccCcccceeecchHHHHHHHHh---CC------CCCCCceEEEeCCCc
Q 009842 80 EVGYAIR----FE-------D-----------RTSERTLIKYLTDGVLLREILS---NP------DLSPYSVIILDEAHE 128 (524)
Q Consensus 80 ~vg~~~~----~~-------~-----------~~~~~~~i~~~T~g~l~~~l~~---~~------~l~~~~~iIiDE~H~ 128 (524)
..|.... .. . .......|++++|+++...+.. .+ ++.++++||+||+|+
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 2221000 00 0 0012456777778888655432 11 368999999999997
Q ss_pred CCCChH-HHH---HHHHHHHhhcccCcEEEEEeccCChHH---Hhhh-cCCCCeeecCCcc--c----------------
Q 009842 129 RSLNTD-ILL---GLVKRLVNLRASKLKILITSATLDGEK---VSKF-FSNCPTLNVPGKL--Y---------------- 182 (524)
Q Consensus 129 ~~~~~~-~~~---~~l~~i~~~~~~~~~ii~~SATl~~~~---~~~~-~~~~~~~~i~~~~--~---------------- 182 (524)
.+.+.. .+. .... ++.......++++||||+++.. +.+. +-+.++..+.|+. +
T Consensus 157 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQ-LIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred cCcccchhhhhhhHHHH-HHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 554332 111 2222 2222223579999999998653 3232 1134555555551 1
Q ss_pred ----ceeEEecCCC--CcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCC
Q 009842 183 ----PVEILHSKER--PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (524)
Q Consensus 183 ----~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~ 256 (524)
+++..+.... ..+.+....+.+.+.....+++++||||+|++.++.+++.|.+.. .+..+..+||.
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~--------~~~~~~~l~g~ 307 (357)
T TIGR03158 236 PVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG--------LGDDIGRITGF 307 (357)
T ss_pred eeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--------CCceEEeeecC
Confidence 2333333211 111222223333333333456799999999999999999998751 24567889999
Q ss_pred CCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccC
Q 009842 257 LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (524)
Q Consensus 257 l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 333 (524)
+++++|.++. +.+|+|||+++++|||+|++ +||. . |.+..+|+||+||+|
T Consensus 308 ~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~-~-------------------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF-S-------------------ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE-C-------------------CCCHHHHhhhcccCC
Confidence 9999997653 67899999999999999987 4442 1 346789999999998
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=8e-30 Score=267.04 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=197.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
...+.+|.+.+..+..++..++++|||+|||..+..+..........++++++|+++++.|+.+++.+..........+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 56778999888888888888999999999996554443221122344899999999999999999876543322111111
Q ss_pred EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChH
Q 009842 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (524)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~ 163 (524)
.. ........+|+++|++.+.+... .++.++++||+||||+ ..... +..++...+...+++++|||+...
T Consensus 193 -~~-g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~-~~~~~-----~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 193 -YS-GTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHL-FTGKS-----LTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred -ec-CcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhc-ccchh-----HHHHHHhhhccceEEEEeccCCCc
Confidence 11 11112357899999998876432 2678999999999994 43322 234444443356799999999532
Q ss_pred H-----HhhhcCCCCeeecC-------CcccceeEE--ecCCC--------CcchHH------------HHHHHHHHHHh
Q 009842 164 K-----VSKFFSNCPTLNVP-------GKLYPVEIL--HSKER--------PTSYLE------------SALKTAIDIHV 209 (524)
Q Consensus 164 ~-----~~~~~~~~~~~~i~-------~~~~~v~~~--~~~~~--------~~~~~~------------~~~~~~~~~~~ 209 (524)
. +..+||.. ...+. +...+.++. ..... ..+|.. ..+.......
T Consensus 263 ~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~- 340 (501)
T PHA02558 263 KANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKL- 340 (501)
T ss_pred cccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 1 23355431 11111 111111111 11000 011110 1111111111
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec-CccccccC
Q 009842 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETSLT 288 (524)
Q Consensus 210 ~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT-~i~e~gid 288 (524)
...++++|||+++.++++.+++.|.+. +..+..+||+++.++|..+++.|++|...||||| +++++|+|
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~----------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKV----------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 134578999999999999999999885 6688899999999999999999999999999998 89999999
Q ss_pred CCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCe
Q 009842 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK 339 (524)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~ 339 (524)
+|+++.||.... +-|+..|+||+||+||..+|+
T Consensus 411 ip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 999999996433 237778999999999996664
No 69
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=256.52 Aligned_cols=312 Identities=17% Similarity=0.167 Sum_probs=215.9
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC-----CCCcEEEEcccchhHHHHHHHHHHHHh--CCcccceE
Q 009842 11 ETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (524)
Q Consensus 11 ~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~-----~~~~~i~~~~P~r~la~~~~~~~~~~~--~~~~~~~v 81 (524)
...+..+..+++++.+|||||||| ..+|.+...... ..|-+.+++.|++.++.|+++.+.+.. ........
T Consensus 164 ~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~ 243 (593)
T KOG0344|consen 164 KQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAA 243 (593)
T ss_pred chhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhh
Confidence 367777889999999999999999 555544433222 234588999999999999999875543 11111111
Q ss_pred e--EEee----cccccCcccceeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCc
Q 009842 82 G--YAIR----FEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKL 151 (524)
Q Consensus 82 g--~~~~----~~~~~~~~~~i~~~T~g~l~~~l~~~~---~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~-~~~~ 151 (524)
+ |... .........++++.||-.+...+...+ .++.+.++|+||++ +.++...+...+..+...+ .+++
T Consensus 244 ~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i 322 (593)
T KOG0344|consen 244 QFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDI 322 (593)
T ss_pred hcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcch
Confidence 1 1100 001112467899999999888886655 79999999999999 6666633333344444433 3478
Q ss_pred EEEEEeccCChHHHhhhc---C-CCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 009842 152 KILITSATLDGEKVSKFF---S-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (524)
Q Consensus 152 ~ii~~SATl~~~~~~~~~---~-~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~ 227 (524)
++=++|||++.. +.+|. . +...+.+..+....+..-+...-..--...+-.+.+.....-..++|||+.+.+.+.
T Consensus 323 ~~a~FSat~~~~-VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak 401 (593)
T KOG0344|consen 323 RVALFSATISVY-VEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAK 401 (593)
T ss_pred hhhhhhccccHH-HHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHH
Confidence 888999999653 33332 1 222222222211111000000000000112223333333445669999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeec
Q 009842 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (524)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~ 307 (524)
++...|... .++.+...||..++.+|++.++.|+.|++.|++||+++++|+|+-+|+.||++++|.
T Consensus 402 ~L~~~L~~~---------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~----- 467 (593)
T KOG0344|consen 402 QLFEELEIY---------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ----- 467 (593)
T ss_pred HHHHHhhhc---------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc-----
Confidence 999988632 478888999999999999999999999999999999999999999999999988866
Q ss_pred CCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 308 ~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|..+|+||+||+||. ++|++|.+|++++...
T Consensus 468 -------------s~~syihrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 468 -------------SDLSYIHRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred -------------hhHHHHHHhhccCCCCCCcceEEEeccccchh
Confidence 666999999999999 7899999999977655
No 70
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=266.54 Aligned_cols=428 Identities=17% Similarity=0.163 Sum_probs=265.7
Q ss_pred HHHHHH-HhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC----C-----CCcEEEEcccchhHHHHHHHHHHHH---hCC
Q 009842 10 EETIVE-TVEQNPVVVVIGETGSGKST-QLSQILHRHGY----T-----KSGIIGVTQPRRVAAVSVARRVAQE---LGV 75 (524)
Q Consensus 10 ~~~i~~-~l~~~~~~ii~~pTGsGKTt-~l~~~l~~~~~----~-----~~~~i~~~~P~r~la~~~~~~~~~~---~~~ 75 (524)
|..+-. ++...+++++|||||+|||- -+.-++.+... . ...+++++.|.++++.++...+++. +|+
T Consensus 314 QS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI 393 (1674)
T KOG0951|consen 314 QSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGI 393 (1674)
T ss_pred HHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCc
Confidence 333433 34567899999999999992 22233332211 1 1237899999999999998877654 455
Q ss_pred cccceEeEEeecccccCcccceeecchHHHHHHHHhC---CCCCCCceEEEeCCCcCCCChHHH-HHHHHHHHhh---cc
Q 009842 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLNTDIL-LGLVKRLVNL---RA 148 (524)
Q Consensus 76 ~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~---~~l~~~~~iIiDE~H~~~~~~~~~-~~~l~~i~~~---~~ 148 (524)
.++...|... ........++++++||+.-.-.-..+ ...+-++++|+||+|...-+.+.. ...+.+.... ..
T Consensus 394 ~V~ElTgD~~-l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~ 472 (1674)
T KOG0951|consen 394 TVLELTGDSQ-LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTE 472 (1674)
T ss_pred EEEEeccccc-chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcc
Confidence 5555555221 11222357999999999764333332 256678999999999543334433 3333232222 22
Q ss_pred cCcEEEEEeccCCh-HHHhhhcCCCC--eeec--CCcccceeEEecCCCCcchHH---HHHHHHHH-HHhcCCCCCEEEe
Q 009842 149 SKLKILITSATLDG-EKVSKFFSNCP--TLNV--PGKLYPVEILHSKERPTSYLE---SALKTAID-IHVREPEGDVLIF 219 (524)
Q Consensus 149 ~~~~ii~~SATl~~-~~~~~~~~~~~--~~~i--~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~g~iLVF 219 (524)
.+.+++++|||+|+ ++++.|+...+ ++.. .-|+.|++..|......+-.. .+-+.+.+ +......+++|||
T Consensus 473 e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVF 552 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVF 552 (1674)
T ss_pred cCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 47999999999955 67888775443 2222 446677777665544333222 11112221 1222345899999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc----------C-----------------CCCCCCeEEEEecCCCCHHHHhcccCCCCCC
Q 009842 220 MTGQDDIEKLVSKLEDKIRSL----------D-----------------EGSCMDAVILPLHGSLPPEMQVRVFSPPPPN 272 (524)
Q Consensus 220 ~~~~~~~~~~~~~L~~~~~~~----------~-----------------~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 272 (524)
+.+|+++.+.|+.+++.+..- + -.....+++..||+||+..+|..+++.|.+|
T Consensus 553 VHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g 632 (1674)
T KOG0951|consen 553 VHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG 632 (1674)
T ss_pred EEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC
Confidence 999999999999998543110 0 0122456788899999999999999999999
Q ss_pred ceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC-----CCeEEEecCch
Q 009842 273 CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLYPST 347 (524)
Q Consensus 273 ~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~-----~G~~~~l~~~~ 347 (524)
.++|+|+|.++++|+|+|+-+++|- ...+|||..|... ++|..+..||.|||||.+ .|+.+.=+++-
T Consensus 633 ~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 633 HIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred ceeEEEeehhhhhhcCCCcceEEec----CccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCceeeccCchHh
Confidence 9999999999999999998888884 3568999887542 568889999999999983 34444333333
Q ss_pred hhhhhCcCCC--CCcccccCchhHHHHHHhcCCCC----cccccc-----c-------------CCCCCCH----HHHHH
Q 009842 348 VYHDEFLDVT--VPEIQRSSLAGSVLYLKSLDLSD----INVLKF-----D-------------FLDPPSS----ESLED 399 (524)
Q Consensus 348 ~~~~~~~~~~--~pei~~~~l~~~~l~~~~~~~~~----~~~~~~-----~-------------~~~~p~~----~~i~~ 399 (524)
.|...+.... +++-.-..|...+-.-+.+|+.+ .+.... . ..|++.. +-+..
T Consensus 705 qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhs 784 (1674)
T KOG0951|consen 705 QYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHS 784 (1674)
T ss_pred hhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHH
Confidence 3332111112 22222122222111112222221 000000 0 1122211 34567
Q ss_pred HHHHHHHcccccCC---C--CCCHHhHhhccCCCChHHHHHHHHHhhhCCHH
Q 009842 400 ALKQLYLIDAIDEN---G--SITSIGRTMAELPLEPSLSRMLMEANEFGCLS 446 (524)
Q Consensus 400 al~~L~~~g~l~~~---~--~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~ 446 (524)
|.-.|.+.|.|--+ | +.|++|+..+.+++.-......-......|.+
T Consensus 785 a~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 785 AATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred HHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 88888888888432 2 68999999999999877766655555544544
No 71
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=6e-30 Score=254.38 Aligned_cols=313 Identities=17% Similarity=0.209 Sum_probs=242.3
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHH-hc-CCCCCcEEEEcccchhHHHHHHHHHHHH----hCCcccceE
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RH-GYTKSGIIGVTQPRRVAAVSVARRVAQE----LGVRLGEEV 81 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~-~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~----~~~~~~~~v 81 (524)
+.|.+.+..+..+-+++|.+..|+|||.....+.. .. .......++++.|||.++.|+...+... .|..+...+
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 35666777788899999999999999922222222 11 2223457888999999999998876543 455666666
Q ss_pred eEEe-ecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 82 GYAI-RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 82 g~~~-~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
|... ..+...-..++|+++|||++..+...+. ..+.++++|+|||+ ..+++..+..-+..++...|...|++++|||
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEecc
Confidence 6432 2223333678999999999999886665 78999999999999 6888888888899999999988999999999
Q ss_pred CCh---HHHhhhcCCCCeeecCCcc---cceeEEecCCCCc----chHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Q 009842 160 LDG---EKVSKFFSNCPTLNVPGKL---YPVEILHSKERPT----SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (524)
Q Consensus 160 l~~---~~~~~~~~~~~~~~i~~~~---~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~ 229 (524)
.|. +.+.+|+.++..+....+. +.++.++...... +....+...+-++...-+-.+.||||+....|+.+
T Consensus 209 Yp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~ 288 (980)
T KOG4284|consen 209 YPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPI 288 (980)
T ss_pred CchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHH
Confidence 976 4588999888777665432 3334444333322 23334455555666667778999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCC
Q 009842 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (524)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~ 309 (524)
+..|... |+.+.++.|.|++.+|..+++.++.-..+||||||..++|||-|+|+.|||.+-
T Consensus 289 a~~L~ss----------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~--------- 349 (980)
T KOG4284|consen 289 ATHLKSS----------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA--------- 349 (980)
T ss_pred HHHhhcc----------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC---------
Confidence 9999876 899999999999999999999999999999999999999999999999998654
Q ss_pred CCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 310 ~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|..-..|.||+|||||. ..|..+.++-.+..
T Consensus 350 ---------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 350 ---------PADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ---------CcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 44667899999999999 67988888744433
No 72
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1e-29 Score=262.46 Aligned_cols=326 Identities=14% Similarity=0.155 Sum_probs=235.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
++.+..+|++.+.++..|+.++|.|+|.+|||..+...+... ...+.+.+++.|.+++.+|.++.+.+.+|. +|...|
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vgLlTG 372 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD-VGLLTG 372 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc-cceeec
Confidence 356778999999999999999999999999997766555443 234679999999999999999999888863 344444
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
+....+.+.++++|.++|.+++-... .++++..||+||+|- ++..-..-++..++-..|..+++|++|||++
T Consensus 373 -----DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHY--iND~eRGvVWEEViIMlP~HV~~IlLSATVP 445 (1248)
T KOG0947|consen 373 -----DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY--INDVERGVVWEEVIIMLPRHVNFILLSATVP 445 (1248)
T ss_pred -----ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeee--cccccccccceeeeeeccccceEEEEeccCC
Confidence 55667889999999999999986555 899999999999992 2222233345666666788999999999994
Q ss_pred -hHHHhhhcCCC-----CeeecCCcccceeEEecCCCC--------cchHHH----------------------------
Q 009842 162 -GEKVSKFFSNC-----PTLNVPGKLYPVEILHSKERP--------TSYLES---------------------------- 199 (524)
Q Consensus 162 -~~~~~~~~~~~-----~~~~i~~~~~~v~~~~~~~~~--------~~~~~~---------------------------- 199 (524)
...|+.|.|.. -++....|+.|.+.+...... ..++..
T Consensus 446 N~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rg 525 (1248)
T KOG0947|consen 446 NTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRG 525 (1248)
T ss_pred ChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccc
Confidence 56799999853 234444566676654222100 000000
Q ss_pred ----------------------------HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhh-------------
Q 009842 200 ----------------------------ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR------------- 238 (524)
Q Consensus 200 ----------------------------~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~------------- 238 (524)
....++.......--+++|||=+++.|++.++.|...--
T Consensus 526 s~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl 605 (1248)
T KOG0947|consen 526 SQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFL 605 (1248)
T ss_pred ccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHH
Confidence 111222222233334899999999999999999964310
Q ss_pred -----hcCCC-----------CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCccc
Q 009842 239 -----SLDEG-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (524)
Q Consensus 239 -----~~~~~-----------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k 302 (524)
.+... +...-++..||||+-+--++-|+..|..|-+||++||.++++|||+|+..+|+++ +.|
T Consensus 606 ~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S-l~K 684 (1248)
T KOG0947|consen 606 SKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS-LRK 684 (1248)
T ss_pred HHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee-hhh
Confidence 01100 0011246669999999999999999999999999999999999999988888864 222
Q ss_pred ceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEEEecCch
Q 009842 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (524)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~ 347 (524)
.|. -....+...+|.|++|||||. ..|.++.+....
T Consensus 685 ---hDG------~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 ---HDG------NEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ---ccC------cceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 221 222346778999999999998 579988887554
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=4.2e-28 Score=268.78 Aligned_cols=316 Identities=22% Similarity=0.273 Sum_probs=206.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
.++.+.||.++......+ ++++++|||+|||.+...++.......+++++++.|++.++.|+++.+.+.++......+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 467788999999887776 7899999999999544333332222346789999999999999999988877653111111
Q ss_pred EEee--cccc--cCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 83 YAIR--FEDR--TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 83 ~~~~--~~~~--~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
+.-. .... ...+.+|+++||+.+...+.... .+.++++||+||||. .........+++...... ....+++||
T Consensus 92 ~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~-~~~~~~~~~i~~~~~~~~-~~~~il~lT 169 (773)
T PRK13766 92 FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR-AVGNYAYVYIAERYHEDA-KNPLVLGLT 169 (773)
T ss_pred EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc-ccccccHHHHHHHHHhcC-CCCEEEEEE
Confidence 1111 1110 11357899999999987775544 688999999999994 433322222333333333 367899999
Q ss_pred ccCCh--HHHhhhcCC--CCeeecCCcc--------cceeEEe--cC---------------------------------
Q 009842 158 ATLDG--EKVSKFFSN--CPTLNVPGKL--------YPVEILH--SK--------------------------------- 190 (524)
Q Consensus 158 ATl~~--~~~~~~~~~--~~~~~i~~~~--------~~v~~~~--~~--------------------------------- 190 (524)
||+.. +.+...+.+ ...+.+..+. .+.++.+ ..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 99832 222221111 0000000000 0000000 00
Q ss_pred ---------------------CCCc------------------------------chHH---------------------
Q 009842 191 ---------------------ERPT------------------------------SYLE--------------------- 198 (524)
Q Consensus 191 ---------------------~~~~------------------------------~~~~--------------------- 198 (524)
.... .|+.
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0000 0000
Q ss_pred -----------------HHHHHHHHHH----hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCC-
Q 009842 199 -----------------SALKTAIDIH----VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS- 256 (524)
Q Consensus 199 -----------------~~~~~~~~~~----~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~- 256 (524)
.....+.++. ...+++++||||++++.++.+++.|... ++.+..+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~----------~~~~~~~~g~~ 399 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE----------GIKAVRFVGQA 399 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC----------CCceEEEEccc
Confidence 0000011111 1245679999999999999999999654 5556667765
Q ss_pred -------CCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhc
Q 009842 257 -------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRV 329 (524)
Q Consensus 257 -------l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~ 329 (524)
|++.+|.++++.|++|..+|+|||+++++|+|+|++++||+++.+ .+...++||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~------------------~s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPV------------------PSEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCC------------------CCHHHHHHHh
Confidence 999999999999999999999999999999999999999986542 3667899999
Q ss_pred cccCCCCCCeEEEecCchhh
Q 009842 330 GRAGRTRPGKCYRLYPSTVY 349 (524)
Q Consensus 330 GRaGR~~~G~~~~l~~~~~~ 349 (524)
||+||.++|.+|.|++++..
T Consensus 462 GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred cccCcCCCCEEEEEEeCCCh
Confidence 99999999999999875544
No 74
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=267.66 Aligned_cols=327 Identities=22% Similarity=0.236 Sum_probs=223.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCccc-ceEe
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG-EEVG 82 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~-~~vg 82 (524)
.+|.+|.+.++.+.+|++++|+.||||||| +++.+++......+..+.+++-|+++|++++.+++.+......+ ..++
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 489999999999999999999999999999 66656666655555668899999999999999999766543221 1111
Q ss_pred -EE--eecccc---cCcccceeecchHHHHHHHHhCC-----CCCCCceEEEeCCCc-CCCChHHHHHHHHHHHhh---c
Q 009842 83 -YA--IRFEDR---TSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNL---R 147 (524)
Q Consensus 83 -~~--~~~~~~---~~~~~~i~~~T~g~l~~~l~~~~-----~l~~~~~iIiDE~H~-~~~~~~~~~~~l~~i~~~---~ 147 (524)
|. ...... .....+|++++|.||...++... .++++++||+||+|- ++.-..-+..++++++.. .
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~ 229 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRY 229 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhcc
Confidence 11 111111 24568999999999987554332 588899999999995 222222233334444443 3
Q ss_pred ccCcEEEEEeccC-Ch-HHHhhhcCCCCeeecCCcccc--eeEEecCCCCcc--------hHHHHHHHHHHHHhcCCCCC
Q 009842 148 ASKLKILITSATL-DG-EKVSKFFSNCPTLNVPGKLYP--VEILHSKERPTS--------YLESALKTAIDIHVREPEGD 215 (524)
Q Consensus 148 ~~~~~ii~~SATl-~~-~~~~~~~~~~~~~~i~~~~~~--v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~ 215 (524)
+.++++|.+|||+ ++ +...++++..-...+.+...| ...+....+..- -.......+.... -..+-+
T Consensus 230 ~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~-~~~~~~ 308 (851)
T COG1205 230 GSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALL-VRNGIQ 308 (851)
T ss_pred CCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHH-HHcCce
Confidence 3578999999999 44 445566654322214433222 222222222100 0111111221111 134568
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEE
Q 009842 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 216 iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~V 295 (524)
+|||+.+++.++.++..........+ . .....+..++|++..++|.+++..|+.|+..++++||++|.||||.++..|
T Consensus 309 tL~F~~sr~~~e~~~~~~~~~~~~~~-~-~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldav 386 (851)
T COG1205 309 TLVFFRSRKQVELLYLSPRRRLVREG-G-KLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAV 386 (851)
T ss_pred EEEEEehhhhhhhhhhchhHHHhhcc-h-hhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhH
Confidence 99999999999999865555543332 1 124568889999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC-CCeEEEecCchhhhh
Q 009842 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PGKCYRLYPSTVYHD 351 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~-~G~~~~l~~~~~~~~ 351 (524)
|.+|+|- .|..+++||+|||||.. .+..+..+..+..+.
T Consensus 387 i~~g~P~-----------------~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~ 426 (851)
T COG1205 387 IAYGYPG-----------------VSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDS 426 (851)
T ss_pred hhcCCCC-----------------chHHHHHHhhhhccCCCCCceEEEEeCCCccch
Confidence 9988754 26779999999999984 666555555444443
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.9e-29 Score=238.83 Aligned_cols=304 Identities=19% Similarity=0.173 Sum_probs=208.9
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEe-
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI- 85 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~- 85 (524)
+.+++.-.++.++++.|+.|||+||| +++|.++. +++.+++.|..++..++...+.. +...+...-....
T Consensus 25 QE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 25 QEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLST 97 (641)
T ss_pred HHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhH
Confidence 34456667788999999999999999 78887765 45888999999998887776532 2222211111000
Q ss_pred -------ecccccCcccceeecchHHH-----HHHHHhCCCCCCCceEEEeCCCcCC-----CChHHHHHHHHHHHhhcc
Q 009842 86 -------RFEDRTSERTLIKYLTDGVL-----LREILSNPDLSPYSVIILDEAHERS-----LNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 86 -------~~~~~~~~~~~i~~~T~g~l-----~~~l~~~~~l~~~~~iIiDE~H~~~-----~~~~~~~~~l~~i~~~~~ 148 (524)
........+.+++|.||++- +..+..-..-..++++++||+|+.+ +..|++. |-.+....+
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~--LG~LRS~~~ 175 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLT--LGSLRSVCP 175 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhh--hhhHHhhCC
Confidence 00122345688999999854 3333333344567899999999944 3444432 334444455
Q ss_pred cCcEEEEEeccCChHHHhhhc----CCCCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHH-------------hcC
Q 009842 149 SKLKILITSATLDGEKVSKFF----SNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIH-------------VRE 211 (524)
Q Consensus 149 ~~~~ii~~SATl~~~~~~~~~----~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 211 (524)
+..-++++||.+++.-.+.+ -..|+-.+....|.-..+|.. .-.+++.+.+..+.+.. ...
T Consensus 176 -~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~-~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~ 253 (641)
T KOG0352|consen 176 -GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN-HMKSFITDCLTVLADFSSSNLGKHEKASQNKKT 253 (641)
T ss_pred -CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH-HHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence 88899999999876433322 123333333333332232211 11112222222121111 111
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCC
Q 009842 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~ 291 (524)
-.|..||||.|+++++.++-.|... ++....+|+||...+|.+|.+.+.+|+.-||+||+.+++|||-|+
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~----------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIA----------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhc----------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 2478999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 292 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
|++||+...++ +.+-|.|..|||||. .+..|-..|++++.+.
T Consensus 324 VRFViHW~~~q------------------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 324 VRFVIHWSPSQ------------------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred eeEEEecCchh------------------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 99999976544 778999999999999 6788888889888766
No 76
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.8e-29 Score=266.27 Aligned_cols=330 Identities=15% Similarity=0.154 Sum_probs=238.9
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
.+++...|++.+..+..|+.++++||||||||.+...++..... .+.+++++.|.+++.+|.++.+...+|.- ...+|
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vG 194 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVG 194 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-cCCceEeccchhhhhhhHHHHHHHHhhhh-hhhcc
Confidence 46788999999999999999999999999999666655554433 35569999999999999999998888743 33333
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC-
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL- 160 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~-~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl- 160 (524)
- ...+-..++++.++++|.++|.+++..+ ..+.++..||+||+|. .-+ ....-+....+-..|.++++|++|||+
T Consensus 195 L-~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D-~eRG~VWEE~Ii~lP~~v~~v~LSATv~ 271 (1041)
T COG4581 195 L-MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGD-RERGVVWEEVIILLPDHVRFVFLSATVP 271 (1041)
T ss_pred c-eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee-ccc-cccchhHHHHHHhcCCCCcEEEEeCCCC
Confidence 1 2224455678899999999999988665 5899999999999994 222 222233555666677789999999999
Q ss_pred ChHHHhhhcC-----CCCeeecCCcccceeEEecCCC--------CcchHHHH----HH---------------------
Q 009842 161 DGEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER--------PTSYLESA----LK--------------------- 202 (524)
Q Consensus 161 ~~~~~~~~~~-----~~~~~~i~~~~~~v~~~~~~~~--------~~~~~~~~----~~--------------------- 202 (524)
|+..|+.|++ .+.++..+.|+.|.+.++.... ..++.... ..
T Consensus 272 N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a 351 (1041)
T COG4581 272 NAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYA 351 (1041)
T ss_pred CHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccccc
Confidence 6688999997 3556677778888877665431 11111111 00
Q ss_pred -----------------HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHH-------------------hhhcCCCC--
Q 009842 203 -----------------TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK-------------------IRSLDEGS-- 244 (524)
Q Consensus 203 -----------------~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~-------------------~~~~~~~~-- 244 (524)
.++........-++++|+=++..|+..+..+... +..+....
T Consensus 352 ~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~ 431 (1041)
T COG4581 352 RRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRE 431 (1041)
T ss_pred ccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhc
Confidence 0111122223348999999999999998888621 01111111
Q ss_pred CC----------CeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccc
Q 009842 245 CM----------DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (524)
Q Consensus 245 ~~----------~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~ 314 (524)
.+ .-.+..||+||-+..+..++..|..|.+||++||.+++.|+|+|.-+ |+-+++.| || .
T Consensus 432 lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart-vv~~~l~K---~d------G 501 (1041)
T COG4581 432 LPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART-VVFTSLSK---FD------G 501 (1041)
T ss_pred CcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc-eeeeeeEE---ec------C
Confidence 00 11345799999999999999999999999999999999999999554 45455544 33 2
Q ss_pred cceeeecHHhHHhhccccCCC---CCCeEEEecCch
Q 009842 315 LDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (524)
Q Consensus 315 l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~ 347 (524)
-.-.|++..+|.|++|||||. ..|.++...+..
T Consensus 502 ~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 502 NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred CceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 334688999999999999998 579988885433
No 77
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=8.5e-30 Score=257.05 Aligned_cols=326 Identities=15% Similarity=0.186 Sum_probs=236.1
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
+-+.++|...+..+.+++.++|+|.|.+|||..+...+..... ...+++++.|.+++.+|.++.+..+++ .+|...|
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMTG- 204 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-EKQRVIYTSPIKALSNQKYRELLEEFK-DVGLMTG- 204 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-hcCeEEeeChhhhhcchhHHHHHHHhc-ccceeec-
Confidence 5577899999999999999999999999999666555443322 356999999999999999999988886 4666666
Q ss_pred EeecccccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC-
Q 009842 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD- 161 (524)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~- 161 (524)
+-..++++..+++|.++|..++-.+. .++.+..||+||+| .+-|.+-.. ++..-+-..|.+.+.+++|||+|
T Consensus 205 ----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGV-VWEETIIllP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 205 ----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGV-VWEETIILLPDNVRFVFLSATIPN 278 (1041)
T ss_pred ----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccce-eeeeeEEeccccceEEEEeccCCC
Confidence 33345678899999999998885444 89999999999999 443333211 12222334566999999999995
Q ss_pred hHHHhhhcC-----CCCeeecCCcccceeEE-ecCC---------CCcchHHHHHHHHHHH-------------------
Q 009842 162 GEKVSKFFS-----NCPTLNVPGKLYPVEIL-HSKE---------RPTSYLESALKTAIDI------------------- 207 (524)
Q Consensus 162 ~~~~~~~~~-----~~~~~~i~~~~~~v~~~-~~~~---------~~~~~~~~~~~~~~~~------------------- 207 (524)
+..|++|.. .|.++..+-|+.|..-+ |... ....|-++.+...+..
T Consensus 279 A~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~k 358 (1041)
T KOG0948|consen 279 ARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRK 358 (1041)
T ss_pred HHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccccc
Confidence 567999984 35667777777777554 2211 1112222222222221
Q ss_pred -------------------HhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh------------------cCCC-------
Q 009842 208 -------------------HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------------LDEG------- 243 (524)
Q Consensus 208 -------------------~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~------------------~~~~------- 243 (524)
.......++|||.=++++|+..|-.+.+..-. ++..
T Consensus 359 G~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqi 438 (1041)
T KOG0948|consen 359 GGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQI 438 (1041)
T ss_pred CCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHH
Confidence 11222348999999999999999888654211 1100
Q ss_pred ----CCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceee
Q 009842 244 ----SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (524)
Q Consensus 244 ----~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~ 319 (524)
....-++..|||||-|--++.|+-.|.+|-+|+++||.+++.|+|+|+-++|.- ..+.| +.-.-.|
T Consensus 439 e~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKf------DG~~fRw 508 (1041)
T KOG0948|consen 439 ENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKF------DGKKFRW 508 (1041)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----ecccc------CCcceee
Confidence 001224666999999999999999999999999999999999999997777662 12233 4445579
Q ss_pred ecHHhHHhhccccCCC---CCCeEEEecCchh
Q 009842 320 ISKVQANQRVGRAGRT---RPGKCYRLYPSTV 348 (524)
Q Consensus 320 ~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~ 348 (524)
+|.-+|+|++|||||. ..|.|+.+..+.-
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcC
Confidence 9999999999999998 5799999986543
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=8.6e-29 Score=277.10 Aligned_cols=276 Identities=14% Similarity=0.103 Sum_probs=181.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC---CcccceE
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEEV 81 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~---~~~~~~v 81 (524)
..+++|.+.+..+..|++++++||||||||+++..++.... ..+.+++++.|+++++.|+++++.+... ..+....
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~ 158 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILY 158 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 45788999999999999999999999999965433333222 2467899999999999999998865432 2221122
Q ss_pred eEEe-ecccc-------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCC-----------hHHHHHHHHH
Q 009842 82 GYAI-RFEDR-------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (524)
Q Consensus 82 g~~~-~~~~~-------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~-----------~~~~~~~l~~ 142 (524)
|... ..... .....+|+++|||.|.+.+. .-...+++++|+||||. .++ .+|....+..
T Consensus 159 g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~lGF~~~~i~~ 236 (1176)
T PRK09401 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLLGFSEEDIEK 236 (1176)
T ss_pred ccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHHHhCCCCHHHHHH
Confidence 2110 00000 12357999999999988765 22455699999999994 443 1221112222
Q ss_pred HHhhcc------------------------cCcEEEEEeccCChHHHh-hhcCCCCeeecCCcc---cceeEEecCCCCc
Q 009842 143 LVNLRA------------------------SKLKILITSATLDGEKVS-KFFSNCPTLNVPGKL---YPVEILHSKERPT 194 (524)
Q Consensus 143 i~~~~~------------------------~~~~ii~~SATl~~~~~~-~~~~~~~~~~i~~~~---~~v~~~~~~~~~~ 194 (524)
++...+ .+.+++++|||+++..+. .+|.+.-.+.+.... ..+...|....
T Consensus 237 i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~-- 314 (1176)
T PRK09401 237 AMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE-- 314 (1176)
T ss_pred HHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--
Confidence 222211 157899999999764222 223222223332221 12332332221
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEecCcHHH---HHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCC
Q 009842 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDD---IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP 271 (524)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 271 (524)
+ ....+..+.... +.++||||+++.. ++.+++.|... ++.+..+||+| + +.++.|++
T Consensus 315 ~----k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~----------gi~v~~~hg~l---~--~~l~~F~~ 374 (1176)
T PRK09401 315 D----SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL----------GINAELAISGF---E--RKFEKFEE 374 (1176)
T ss_pred c----HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC----------CCcEEEEeCcH---H--HHHHHHHC
Confidence 1 112222222222 3579999999777 99999999886 88999999999 2 23599999
Q ss_pred CceEEEEe----cCccccccCCCC-eeEEEeCCccccee
Q 009842 272 NCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQRQ 305 (524)
Q Consensus 272 g~~~ilva----T~i~e~gidip~-v~~VId~g~~k~~~ 305 (524)
|+.+|||| ||++++|||+|+ |+|||++|.|+.+.
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~ 413 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF 413 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE
Confidence 99999999 699999999999 89999999999543
No 79
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-28 Score=232.75 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=227.0
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHH---HHhCCcccc
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGE 79 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~ 79 (524)
|-.-+|.+|+.. -+|.++.+.+.+|+||| ++...++.... ......+++..|+|+++.|..+.+. ...+..+..
T Consensus 49 PSaIQqraI~p~-i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 49 PSAIQQRAILPC-IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred chHHHhcccccc-ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 444556666665 47889999999999999 55555554432 2334578899999999999885432 223334444
Q ss_pred eEeEEeec-cc--ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 80 EVGYAIRF-ED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 80 ~vg~~~~~-~~--~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
.+|..... +. .......|++.|||.....+.... ....+.++|+||++| ++..++... +..+....|++.|+++
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdq-I~~if~~lp~~vQv~l 205 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQ-IYDIFQELPSDVQVVL 205 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHH-HHHHHHHcCcchhhee
Confidence 44432222 22 122347899999999998885555 456699999999996 455555544 7888888888999999
Q ss_pred EeccCChHH--Hh-hhcCCCCeeecCCcc---cceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Q 009842 156 TSATLDGEK--VS-KFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (524)
Q Consensus 156 ~SATl~~~~--~~-~~~~~~~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~ 229 (524)
+|||++.+. +. +|..++..+.+.... ...+.+|......+ .+..+.+++. .-.+.+|||||++.+..+
T Consensus 206 ~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l 279 (397)
T KOG0327|consen 206 LSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNL 279 (397)
T ss_pred ecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHH
Confidence 999998864 33 444433333333211 11222333222222 4445555554 557899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCC
Q 009842 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (524)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~ 309 (524)
...|... +..+..+|+.|.+.+|..+.+.|+.|..+|+++|+.+++|+|+-++..||++++|.
T Consensus 280 ~~~L~~~----------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~------- 342 (397)
T KOG0327|consen 280 TDKLRAH----------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA------- 342 (397)
T ss_pred HHHHhhC----------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc-------
Confidence 9999665 88899999999999999999999999999999999999999999999999988754
Q ss_pred CCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 310 ~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
.+.+|+||+||+||. .+|..+.+.++++...
T Consensus 343 -----------~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 343 -----------RKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred -----------chhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 566999999999999 8999999998877655
No 80
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=6.6e-29 Score=268.10 Aligned_cols=303 Identities=20% Similarity=0.187 Sum_probs=217.1
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEe
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~ 85 (524)
.-|.+++.++..|+++.|..|||.||| +|+|.++. ++..+|+.|...|...+...+ ...++......+...
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q~ 339 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQT 339 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh-hhcCcceeecccccc
Confidence 457778889999999999999999999 88887765 458899999999999888877 333333222222111
Q ss_pred e------cccccC--cccceeecchHHHHHHH---HhCCCCCC---CceEEEeCCCcCCCChHHHHHH---HHHHHhhcc
Q 009842 86 R------FEDRTS--ERTLIKYLTDGVLLREI---LSNPDLSP---YSVIILDEAHERSLNTDILLGL---VKRLVNLRA 148 (524)
Q Consensus 86 ~------~~~~~~--~~~~i~~~T~g~l~~~l---~~~~~l~~---~~~iIiDE~H~~~~~~~~~~~~---l~~i~~~~~ 148 (524)
. +..... ...+|+|.||+.+...- .....+.. +..+||||||+.+-+...+..- +..+....+
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~ 419 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP 419 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC
Confidence 1 011112 36789999999876432 11113334 8899999999965444322222 233333444
Q ss_pred cCcEEEEEeccCChHH---HhhhcC--CCCeeecCCcccc--eeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecC
Q 009842 149 SKLKILITSATLDGEK---VSKFFS--NCPTLNVPGKLYP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (524)
Q Consensus 149 ~~~~ii~~SATl~~~~---~~~~~~--~~~~~~i~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~ 221 (524)
...+|++|||..... +.+-++ +++++.-...... .++..... ...............+.+.+||+|.
T Consensus 420 -~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~-----~~~~~~~~~~~~~~~~~~s~IIYC~ 493 (941)
T KOG0351|consen 420 -GVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTD-----KDALLDILEESKLRHPDQSGIIYCL 493 (941)
T ss_pred -CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccC-----ccchHHHHHHhhhcCCCCCeEEEeC
Confidence 679999999996543 444333 2333322211111 12221111 1222233333444567789999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcc
Q 009842 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (524)
Q Consensus 222 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~ 301 (524)
++.+++.++..|++. ++....||+||++.+|..|...|-.++.+|||||=++++|||.|||+.||++++|
T Consensus 494 sr~~ce~vs~~L~~~----------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lP 563 (941)
T KOG0351|consen 494 SRKECEQVSAVLRSL----------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLP 563 (941)
T ss_pred CcchHHHHHHHHHHh----------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCc
Confidence 999999999999987 6778889999999999999999999999999999999999999999999999998
Q ss_pred cceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 302 k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
| |...|.|-+|||||. .+..|..+|+.+++..
T Consensus 564 k------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 564 K------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred h------------------hHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 8 888999999999999 6899999999888766
No 81
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=256.60 Aligned_cols=311 Identities=19% Similarity=0.266 Sum_probs=223.0
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC-----CCCcEEEEcccchhHHHHHHHHHHHH---hC
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQE---LG 74 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~-----~~~~~i~~~~P~r~la~~~~~~~~~~---~~ 74 (524)
+....|.+.+.+|..|+++|.+|.|||||| .++|.+...... ..|...+++.|+|.++.|+.+.+... ++
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 334567778899999999999999999999 446666443221 23568899999999999999877543 44
Q ss_pred CcccceEeEEeeccc---ccCcccceeecchHHHHHHHHhCC----CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 75 VRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 75 ~~~~~~vg~~~~~~~---~~~~~~~i~~~T~g~l~~~l~~~~----~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
..+...+|.. +... .....+.|+|||||+....+..+. .+.++.++|+||++ |.++..+...... ++...
T Consensus 467 ir~v~vygg~-~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~-Ii~nl 543 (997)
T KOG0334|consen 467 IRVVCVYGGS-GISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITR-ILQNL 543 (997)
T ss_pred ceEEEecCCc-cHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccch-HHhhc
Confidence 4444444421 1111 123458999999999988885443 56677799999999 8888777555444 44444
Q ss_pred ccCcEEEEEeccCChH--HHhhhcCCCCe-eecCCcc---cceeEEecCCC-CcchHHHHHHHHHHHHhcCCCCCEEEec
Q 009842 148 ASKLKILITSATLDGE--KVSKFFSNCPT-LNVPGKL---YPVEILHSKER-PTSYLESALKTAIDIHVREPEGDVLIFM 220 (524)
Q Consensus 148 ~~~~~ii~~SATl~~~--~~~~~~~~~~~-~~i~~~~---~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~iLVF~ 220 (524)
+++.|.+++|||.+.. .++.-.-..|+ +.+.++. ..|+..+.... ..+-+.. +..++.. ....+++||||
T Consensus 544 rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~k-L~eLl~e--~~e~~~tiiFv 620 (997)
T KOG0334|consen 544 RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLK-LLELLGE--RYEDGKTIIFV 620 (997)
T ss_pred chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHH-HHHHHHH--HhhcCCEEEEE
Confidence 4599999999999864 23322222443 2333322 11122221111 1111111 2222222 23478999999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCc
Q 009842 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (524)
Q Consensus 221 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~ 300 (524)
...+.|..+.+.|.+. ++.+..+||+.++.+|..+++.|++|..+++|||+++++|+|++++.+||++++
T Consensus 621 ~~qe~~d~l~~~L~~a----------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 621 DKQEKADALLRDLQKA----------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred cCchHHHHHHHHHHhc----------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc
Confidence 9999999999999865 777778999999999999999999999999999999999999999999999888
Q ss_pred ccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 301 ~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|. -.+.|+||.||+||+ +.|.||.+.++++.
T Consensus 691 pn------------------h~edyvhR~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 691 PN------------------HYEDYVHRVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred ch------------------hHHHHHHHhcccccCCccceeEEEeChHHh
Confidence 66 445699999999999 67999999988443
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=1.7e-27 Score=272.08 Aligned_cols=315 Identities=12% Similarity=0.096 Sum_probs=199.3
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCC-cccceEeE
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV-RLGEEVGY 83 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~-~~~~~vg~ 83 (524)
..+..|++++..+.+|++++++||||||||++...+..... .++.+++++.|+++++.|+++.+...... ..+..+.+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 45778999999999999999999999999963222222221 23568999999999999999988653321 01112211
Q ss_pred E---eecccc-------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCC-----------hHHHHHHHHH
Q 009842 84 A---IRFEDR-------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (524)
Q Consensus 84 ~---~~~~~~-------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~-----------~~~~~~~l~~ 142 (524)
. ...... .....+|+++|||.+...+.... ..+++++||||||+ .+. .+|...+...
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 1 111111 12357999999998877654322 26799999999995 332 2333332221
Q ss_pred ---HH----------------------hhcccCcE-EEEEeccCCh-HHHhhhcCCCCeeecCCccc---ceeEEecCCC
Q 009842 143 ---LV----------------------NLRASKLK-ILITSATLDG-EKVSKFFSNCPTLNVPGKLY---PVEILHSKER 192 (524)
Q Consensus 143 ---i~----------------------~~~~~~~~-ii~~SATl~~-~~~~~~~~~~~~~~i~~~~~---~v~~~~~~~~ 192 (524)
++ ...+...+ ++++|||+++ .....++.+.-.+.+..... .+...|....
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~ 315 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE 315 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC
Confidence 11 11122344 6779999975 34445554444444443321 1222222111
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH---HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCC
Q 009842 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI---EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (524)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 269 (524)
.+.. ..+..+.... +.++||||++++.+ +++++.|.+. ++.+..+||+ |..+++.|
T Consensus 316 -~~~k----~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~----------Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 316 -KIIK----EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED----------GFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred -HHHH----HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC----------CCeEEEecch-----HHHHHHHH
Confidence 1111 1233332222 45799999998764 7889999876 8999999995 88899999
Q ss_pred CCCceEEEEec----CccccccCCCC-eeEEEeCCccccee----ecCCCCccccceeeecHHhHHhhccccCCC-CCCe
Q 009842 270 PPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQRQ----YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (524)
Q Consensus 270 ~~g~~~ilvaT----~i~e~gidip~-v~~VId~g~~k~~~----~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~ 339 (524)
++|+.+||||| +++++|||+|+ |+|||++|+||.+. |...... + +. .....++.|||||. .++.
T Consensus 375 ~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 375 EEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHHhhhhcccCCcch
Confidence 99999999999 59999999999 99999999999442 2211110 0 00 22345778999998 5667
Q ss_pred EEEecCchhh
Q 009842 340 CYRLYPSTVY 349 (524)
Q Consensus 340 ~~~l~~~~~~ 349 (524)
|+..+..++.
T Consensus 449 ~~~~~~~~~~ 458 (1638)
T PRK14701 449 GVLDVFPEDV 458 (1638)
T ss_pred hHHHhHHHHH
Confidence 7644444333
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=3.6e-26 Score=247.82 Aligned_cols=297 Identities=20% Similarity=0.187 Sum_probs=179.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcccchhHHHHHHHHHHHH----hC-Ccccc
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQE----LG-VRLGE 79 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~-~~~~~~~~i~~~~P~r~la~~~~~~~~~~----~~-~~~~~ 79 (524)
-+++|+.+.+....+..++|.||||+|||..+..++.. ........+++..|+++.++++++++.+. ++ ..+..
T Consensus 287 p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L 366 (878)
T PRK09694 287 PRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLIL 366 (878)
T ss_pred ChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEe
Confidence 46778777655456788999999999999333323222 22223458999999999999999998642 22 12222
Q ss_pred eEeEEe---eccc--------------------------ccCcccceeecchHHHHHHHHhCC--CCCC----CceEEEe
Q 009842 80 EVGYAI---RFED--------------------------RTSERTLIKYLTDGVLLREILSNP--DLSP----YSVIILD 124 (524)
Q Consensus 80 ~vg~~~---~~~~--------------------------~~~~~~~i~~~T~g~l~~~l~~~~--~l~~----~~~iIiD 124 (524)
..|... .+.. +..--..++|+|...++...+... .++. -++||||
T Consensus 367 ~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiD 446 (878)
T PRK09694 367 AHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVD 446 (878)
T ss_pred ecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEe
Confidence 222111 0000 000126899999988875544322 2222 3589999
Q ss_pred CCCcCCCChHHHHHHHHHHHhhc-ccCcEEEEEeccCChHHHhhh---cCCC---------CeeecCC----ccc-----
Q 009842 125 EAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLDGEKVSKF---FSNC---------PTLNVPG----KLY----- 182 (524)
Q Consensus 125 E~H~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SATl~~~~~~~~---~~~~---------~~~~i~~----~~~----- 182 (524)
|+|.....+ ..++..+++.. ..+.++|+||||++...-.++ ++.. |.+...+ ..+
T Consensus 447 EVHAyD~ym---~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 447 EVHAYDAYM---YGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred chhhCCHHH---HHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 999533322 23333333321 126789999999987542222 2211 1111100 000
Q ss_pred --------ceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEec
Q 009842 183 --------PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (524)
Q Consensus 183 --------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh 254 (524)
.+.+..............++.+.+.. ..++++||||||++.++++++.|.+... ....+..+|
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-------~~~~v~llH 594 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN-------TQVDIDLFH 594 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC-------CCceEEEEe
Confidence 01111000000011122233333222 3567899999999999999999986521 135788999
Q ss_pred CCCCHHHHh----cccCCC-CCCc---eEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHH
Q 009842 255 GSLPPEMQV----RVFSPP-PPNC---RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (524)
Q Consensus 255 ~~l~~~~r~----~v~~~f-~~g~---~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 326 (524)
|.++..+|. ++++.| ++|+ .+|||||+++|+|+||+ ++++|.. ..+..+++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHHH
Confidence 999999994 566677 5665 48999999999999995 7888841 13467899
Q ss_pred hhccccCCC
Q 009842 327 QRVGRAGRT 335 (524)
Q Consensus 327 QR~GRaGR~ 335 (524)
||+||+||.
T Consensus 654 QRaGR~~R~ 662 (878)
T PRK09694 654 QRLGRLHRH 662 (878)
T ss_pred HHHhccCCC
Confidence 999999997
No 84
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=227.32 Aligned_cols=307 Identities=21% Similarity=0.191 Sum_probs=218.1
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHH---HHhCCcccceEe
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~~vg 82 (524)
+|.+-+..+.++++++-.|.|||||| .++|.+...... +.+.+.+++.|++.++.|..+-+. +..+.+....+|
T Consensus 47 iqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~g 126 (529)
T KOG0337|consen 47 IQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVG 126 (529)
T ss_pred hhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcc
Confidence 45566677889999999999999999 556655544332 345589999999999999876553 333344444556
Q ss_pred EEeeccc--ccCcccceeecchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 83 YAIRFED--RTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 83 ~~~~~~~--~~~~~~~i~~~T~g~l~~~l~~~-~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
+..-.+. ....+.+|+++|||.++...... -.++.+.+||+||++ +.+..++... +..++...+.+.|.++||||
T Consensus 127 gD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeq-l~e~l~rl~~~~QTllfSat 204 (529)
T KOG0337|consen 127 GDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQ-LHEILSRLPESRQTLLFSAT 204 (529)
T ss_pred cchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHH-HHHHHHhCCCcceEEEEecc
Confidence 4322221 23457899999999998766433 378999999999999 7888877766 77788888888999999999
Q ss_pred CChH--HHhhhcCCCCe-ee--cCCcccc-eeEEecCCCCcchHHHHHHHHHHHHh-cCCCCCEEEecCcHHHHHHHHHH
Q 009842 160 LDGE--KVSKFFSNCPT-LN--VPGKLYP-VEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTGQDDIEKLVSK 232 (524)
Q Consensus 160 l~~~--~~~~~~~~~~~-~~--i~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~iLVF~~~~~~~~~~~~~ 232 (524)
++.. .+++---..|+ +. ++.+..+ ++..|......+ ....++.+.. .-.+.+++||++|+.+++-+...
T Consensus 205 lp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~----K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~l 280 (529)
T KOG0337|consen 205 LPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE----KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGL 280 (529)
T ss_pred CchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH----HHHHHHHHHhccccccceeEEecccchHHHHHHH
Confidence 9865 23332112222 22 1121111 111222111111 1122222221 11234899999999999999999
Q ss_pred HHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCc
Q 009842 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (524)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~ 312 (524)
|.+. ++.+..++|+|.++.|..-+..|..++..++|.|+++++|+|||-..-||++++|-...
T Consensus 281 l~~~----------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k------- 343 (529)
T KOG0337|consen 281 LRDF----------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK------- 343 (529)
T ss_pred HHhc----------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc-------
Confidence 9886 77788899999999999999999999999999999999999999999999998864221
Q ss_pred cccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 313 ~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
-+.||.||+.|. +.|..|-+...++.
T Consensus 344 -----------lFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 344 -----------LFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred -----------eEEEEecchhhccccceEEEEEecccc
Confidence 346999999988 58999998765544
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=7.5e-26 Score=238.79 Aligned_cols=303 Identities=17% Similarity=0.157 Sum_probs=194.2
Q ss_pred CCchHHHHHHHHHhccC---CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 4 LPILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~---~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
..++.||++.++.+..+ +.-+|+.|||+|||.+...++... +..+++++|+..++.|+.+.+.+.........
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 45789999998887643 367889999999995555444433 34688999999999999999987765443322
Q ss_pred EeEEeecccccCcccceeecchHHHHHHHHhC-------CCC--CCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009842 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSN-------PDL--SPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~-------~~l--~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~ 151 (524)
..+.............|+++|+.++....... ..+ ..+++||+||+|. ... .. .+.++.... ..
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lpA-~~----fr~il~~l~-a~ 402 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VPA-AM----FRRVLTIVQ-AH 402 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-ccH-HH----HHHHHHhcC-cC
Confidence 22211111111224679999998875321110 122 4689999999993 332 22 233333333 44
Q ss_pred EEEEEeccCCh--H---HHhhhcCCCCeeec-------CCcccceeE--EecCCCCc---chHH----------------
Q 009842 152 KILITSATLDG--E---KVSKFFSNCPTLNV-------PGKLYPVEI--LHSKERPT---SYLE---------------- 198 (524)
Q Consensus 152 ~ii~~SATl~~--~---~~~~~~~~~~~~~i-------~~~~~~v~~--~~~~~~~~---~~~~---------------- 198 (524)
..+++|||+.. + .+..++| ++++.. .|-.-+++. .+.+.... +|+.
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K 481 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNK 481 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHH
Confidence 57999999932 1 2333443 333322 232222221 11111111 1110
Q ss_pred -HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC-ceEE
Q 009842 199 -SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF 276 (524)
Q Consensus 199 -~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~i 276 (524)
..+..++..+. ..+.++||||.....+..+++.|. +..+||+++.++|.++++.|++| ..++
T Consensus 482 ~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~---------------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 482 FRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG---------------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC---------------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 11122333222 356799999999988888877651 22389999999999999999875 7899
Q ss_pred EEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCC-eE-------EEecCchh
Q 009842 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPG-KC-------YRLYPSTV 348 (524)
Q Consensus 277 lvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G-~~-------~~l~~~~~ 348 (524)
||+|+++.+|||+|++++||....+ +-|..+|+||.||++|.++| .+ |.|.+++.
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~-----------------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSH-----------------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCC-----------------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999999974321 13788999999999999543 43 88887766
Q ss_pred hhh
Q 009842 349 YHD 351 (524)
Q Consensus 349 ~~~ 351 (524)
.+.
T Consensus 609 ~E~ 611 (732)
T TIGR00603 609 QEM 611 (732)
T ss_pred hHH
Confidence 654
No 86
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=2.2e-26 Score=258.21 Aligned_cols=275 Identities=15% Similarity=0.151 Sum_probs=181.1
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh---CCcccc--
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE-- 79 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~---~~~~~~-- 79 (524)
..++.|...+..+..|++++++||||||||+++..++.... ..+.+++++.|++.++.|+++.+.+.. +.....
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~-~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA-KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 56788999999999999999999999999965443333222 236789999999999999998876543 222211
Q ss_pred -eEeEEeeccc-------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCh-----------HHHHHHH
Q 009842 80 -EVGYAIRFED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT-----------DILLGLV 140 (524)
Q Consensus 80 -~vg~~~~~~~-------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~-----------~~~~~~l 140 (524)
..| ...... ......+|+++||+.|.+.+.... .+++++|+|||| +.++. +|....+
T Consensus 157 ~~~G-g~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 157 AYHS-RLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eecC-CCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHHHHHHHcCCCHHHH
Confidence 112 111111 012348999999999987765422 289999999999 44441 2211112
Q ss_pred HHH----------------------HhhcccCc--EEEEEeccC-ChHHHhhhcCCCCeeecCCcc---cceeEEecCCC
Q 009842 141 KRL----------------------VNLRASKL--KILITSATL-DGEKVSKFFSNCPTLNVPGKL---YPVEILHSKER 192 (524)
Q Consensus 141 ~~i----------------------~~~~~~~~--~ii~~SATl-~~~~~~~~~~~~~~~~i~~~~---~~v~~~~~~~~ 192 (524)
..+ +...+.+. .++++|||. +...-..+|.+...+.+.... ..+...|....
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecc
Confidence 221 11222233 367789995 433222344333233333322 12333333211
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEecCcH---HHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCC
Q 009842 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQ---DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (524)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 269 (524)
. .. . .+..+... .+.++||||+++ +.++++++.|.+. ++.+..+||+++. .+++.|
T Consensus 313 ~--~~-~---~L~~ll~~-l~~~~IVFv~t~~~~~~a~~l~~~L~~~----------g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 313 D--LK-E---TLLEIVKK-LGTGGIVYVSIDYGKEKAEEIAEFLENH----------GVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred c--HH-H---HHHHHHHH-cCCCEEEEEeccccHHHHHHHHHHHHhC----------CceEEEEeCCCCH----HHHHHH
Confidence 1 11 1 22222222 235799999999 9999999999876 7889999999973 578999
Q ss_pred CCCceEEEEe----cCccccccCCCC-eeEEEeCCccccee
Q 009842 270 PPNCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQRQ 305 (524)
Q Consensus 270 ~~g~~~ilva----T~i~e~gidip~-v~~VId~g~~k~~~ 305 (524)
++|+.+|||| ||++++|||+|+ |+|||++|.|+.+.
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999999 599999999999 89999999998754
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.94 E-value=1.5e-25 Score=241.21 Aligned_cols=313 Identities=17% Similarity=0.175 Sum_probs=201.0
Q ss_pred CCchHHHHHHHHHhcc---CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 4 LPILQYEETIVETVEQ---NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~---~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
..++..|+++++.+.+ ++++++.|+||||||......+.... ..+..++++.|++.++.|+++++.+.++..+...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 4578899999999887 47899999999999943322332221 2367899999999999999999988887665555
Q ss_pred EeEEeecc------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH-----HHHHHHHHHhhccc
Q 009842 81 VGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRAS 149 (524)
Q Consensus 81 vg~~~~~~------~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~-----~~~~l~~i~~~~~~ 149 (524)
.|.....+ .......+|+++|++.+. ..+.++++|||||+|+.+...+. ... +..... ...
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~-va~~ra-~~~ 293 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD-LAVVRA-KLE 293 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHH-HHHHHh-hcc
Confidence 44221111 112245789999997653 25789999999999964433221 112 111222 234
Q ss_pred CcEEEEEeccCChHHHhhhc-CCCCeeecCCcc----cc-eeEEecCCC----C-cchHHHHHHHHHHHHhcCCCCCEEE
Q 009842 150 KLKILITSATLDGEKVSKFF-SNCPTLNVPGKL----YP-VEILHSKER----P-TSYLESALKTAIDIHVREPEGDVLI 218 (524)
Q Consensus 150 ~~~ii~~SATl~~~~~~~~~-~~~~~~~i~~~~----~~-v~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~g~iLV 218 (524)
+.++|++|||++.+.+.... |....+....+. .| +++...... . .......++.+.+.. ..+.++||
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll 371 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLL 371 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEE
Confidence 88999999999877655432 223333333332 22 222221110 0 001112222222221 33458888
Q ss_pred ecCcHH------------------------------------------------------------HHHHHHHHHHHHhh
Q 009842 219 FMTGQD------------------------------------------------------------DIEKLVSKLEDKIR 238 (524)
Q Consensus 219 F~~~~~------------------------------------------------------------~~~~~~~~L~~~~~ 238 (524)
|+|.+. .++++++.|.+.+
T Consensus 372 ~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f- 450 (679)
T PRK05580 372 FLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF- 450 (679)
T ss_pred EEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-
Confidence 887532 4556666666553
Q ss_pred hcCCCCCCCeEEEEecCCCC--HHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEE--eCCcccceeecCCCCccc
Q 009842 239 SLDEGSCMDAVILPLHGSLP--PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMYS 314 (524)
Q Consensus 239 ~~~~~~~~~~~v~~lh~~l~--~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VI--d~g~~k~~~~~~~~~~~~ 314 (524)
++..+..+|+++. .++++++++.|++|+.+|||+|++++.|+|+|+|++|+ |.+.+- ...+
T Consensus 451 -------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l--------~~pd 515 (679)
T PRK05580 451 -------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGL--------FSPD 515 (679)
T ss_pred -------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhc--------cCCc
Confidence 4677889999987 46788999999999999999999999999999999884 544321 1111
Q ss_pred cceeeecHHhHHhhccccCCC-CCCeEEEe
Q 009842 315 LDVVQISKVQANQRVGRAGRT-RPGKCYRL 343 (524)
Q Consensus 315 l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 343 (524)
+....-....+.|++|||||. .+|.++..
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 222223467899999999996 78988853
No 88
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.4e-25 Score=228.76 Aligned_cols=303 Identities=16% Similarity=0.192 Sum_probs=210.5
Q ss_pred CCchHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHh---C
Q 009842 4 LPILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~------~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~---~ 74 (524)
+.+...|+.+++.|..+ -+=+++|.-|||||..+...++.. ...|.++....||-++|.|.+..+.+.+ |
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 44666777777766543 234899999999995554444333 3457788999999999999999877654 4
Q ss_pred CcccceEeEEeec------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRLGEEVGYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~~~vg~~~~~------~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
+.++..+|....- +...+...++++.|... ++..-.++++.++|+||-|.-+... +..+....
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQd~V~F~~LgLVIiDEQHRFGV~Q-------R~~L~~KG 408 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQDKVEFHNLGLVIIDEQHRFGVHQ-------RLALREKG 408 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hhcceeecceeEEEEeccccccHHH-------HHHHHHhC
Confidence 5555555522211 12234568999999843 3444489999999999999312111 22222333
Q ss_pred c-CcEEEEEeccCCh-HHHhhhcCCCCe---eecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 009842 149 S-KLKILITSATLDG-EKVSKFFSNCPT---LNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (524)
Q Consensus 149 ~-~~~ii~~SATl~~-~~~~~~~~~~~~---~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~ 223 (524)
. .+.++.||||+=+ ...-..|++-.+ -..|....|+.+........+.+ ++.+.... ..+.++.|-||-.
T Consensus 409 ~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v---~e~i~~ei--~~GrQaY~VcPLI 483 (677)
T COG1200 409 EQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEV---YERIREEI--AKGRQAYVVCPLI 483 (677)
T ss_pred CCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHH---HHHHHHHH--HcCCEEEEEeccc
Confidence 3 5789999999944 444466666444 34455557888877665443332 22232222 2467899999977
Q ss_pred HHHH--------HHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEE
Q 009842 224 DDIE--------KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (524)
Q Consensus 224 ~~~~--------~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~V 295 (524)
++.+ ++++.|...+ +++.+..+||.|+++++++|++.|++|+.+|+|||.+.|-|||+|+.++.
T Consensus 484 eESE~l~l~~a~~~~~~L~~~~--------~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 484 EESEKLELQAAEELYEELKSFL--------PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred cccccchhhhHHHHHHHHHHHc--------ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEE
Confidence 6554 4555555332 57789999999999999999999999999999999999999999999988
Q ss_pred EeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009842 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 296 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
|- +|+.+ .-.++..|-.||+||. .++.|+.+|....
T Consensus 556 VI--------e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 556 VI--------ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EE--------echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 84 33322 2456778999999999 7899999995544
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.4e-24 Score=202.17 Aligned_cols=292 Identities=19% Similarity=0.248 Sum_probs=197.1
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC-CcccceEeEEeeccc
Q 009842 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAIRFED 89 (524)
Q Consensus 11 ~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~-~~~~~~vg~~~~~~~ 89 (524)
+++++.+.+.+.++|-|-||||||-++-+.+.... ..|+++.+..|+...+.+++.|+.+.+. .......| ++
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg-----~S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG-----DS 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEec-----CC
Confidence 45677888999999999999999954444433322 3578999999999999999999988775 44444444 22
Q ss_pred ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 90 ~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
.....+.++++|.-.|++.-. .++++||||+|.-....|..+.+ .+.+.++..-..|.+|||.+.+.-.+..
T Consensus 181 ~~~fr~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~--Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQY--AVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHH--HHHHhhcccCceEEEecCChHHHHHHhh
Confidence 222347899999998887654 58999999999644444544432 1222333466789999998766544444
Q ss_pred CC-CCeeecCCc----ccceeEEecCCCCcchH-----HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh
Q 009842 170 SN-CPTLNVPGK----LYPVEILHSKERPTSYL-----ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (524)
Q Consensus 170 ~~-~~~~~i~~~----~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~ 239 (524)
.+ ...+.++.| +.|+--+.-...-...+ ..++...++.+ ...+.++|||+|+.+..+++++.|.+.+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~~-- 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKKL-- 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH-HhcCCcEEEEecchHHHHHHHHHHHhhC--
Confidence 22 233444433 22322111111111111 11222222222 2345699999999999999999997764
Q ss_pred cCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceee
Q 009842 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (524)
Q Consensus 240 ~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~ 319 (524)
+...+...||. ...|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|- +... .-
T Consensus 330 ------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh-------~v 385 (441)
T COG4098 330 ------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEH-------RV 385 (441)
T ss_pred ------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCCc-------cc
Confidence 45566778875 345777888999999999999999999999999998873 1111 12
Q ss_pred ecHHhHHhhccccCCC---CCCeEEEe
Q 009842 320 ISKVQANQRVGRAGRT---RPGKCYRL 343 (524)
Q Consensus 320 ~s~~~~~QR~GRaGR~---~~G~~~~l 343 (524)
.|.+..+|.+||+||. ..|..+-+
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 4788999999999998 34755443
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2e-25 Score=232.11 Aligned_cols=292 Identities=16% Similarity=0.180 Sum_probs=184.3
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecc------cccCcccce
Q 009842 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE------DRTSERTLI 97 (524)
Q Consensus 24 ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~i 97 (524)
++.||||||||.....++... ...++.++++.|++.++.|+++++.+.++..+....+.....+ .....+.+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 468999999994433333222 2246689999999999999999998888765544333111100 112245789
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH-----HHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcCCC
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNC 172 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~-----~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~~~~ 172 (524)
+++|+..+. ..+.++++|||||.|+.+...+. ... +....... .+.++|++|||+..+.+.....+.
T Consensus 80 VVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~-~a~~ra~~-~~~~vil~SATPsles~~~~~~g~ 151 (505)
T TIGR00595 80 VIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARD-VAVYRAKK-FNCPVVLGSATPSLESYHNAKQKA 151 (505)
T ss_pred EECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHH-HHHHHHHh-cCCCEEEEeCCCCHHHHHHHhcCC
Confidence 999987553 24788999999999974433321 111 12222233 388999999998877665543321
Q ss_pred -CeeecC----Ccccc-eeEEecCCCC--cchHHHHHHHHHHHHhcCCCCCEEEecCcHHH-------------------
Q 009842 173 -PTLNVP----GKLYP-VEILHSKERP--TSYLESALKTAIDIHVREPEGDVLIFMTGQDD------------------- 225 (524)
Q Consensus 173 -~~~~i~----~~~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~------------------- 225 (524)
..+..+ +...| +++....... ...-...++.+.+.. ..++++|||+|++.-
T Consensus 152 ~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~ 229 (505)
T TIGR00595 152 YRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCD 229 (505)
T ss_pred eEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCC
Confidence 222222 22222 2222211111 111122222322222 345689999887642
Q ss_pred -----------------------------------------HHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHH--
Q 009842 226 -----------------------------------------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ-- 262 (524)
Q Consensus 226 -----------------------------------------~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r-- 262 (524)
++++.+.|.+.+ ++..+..+|++++...+
T Consensus 230 ~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f--------p~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 230 VSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF--------PGARIARIDSDTTSRKGAH 301 (505)
T ss_pred CceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC--------CCCcEEEEecccccCccHH
Confidence 566666666653 56788999999987665
Q ss_pred hcccCCCCCCceEEEEecCccccccCCCCeeEEE--eCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCe
Q 009842 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (524)
Q Consensus 263 ~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VI--d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~ 339 (524)
+++++.|++|+.+|||+|++++.|+|+|+|+.|+ |.+.. ....++....-....+.|++|||||. .+|.
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~--------l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~ 373 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSG--------LHSPDFRAAERGFQLLTQVAGRAGRAEDPGQ 373 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCccc--------ccCcccchHHHHHHHHHHHHhccCCCCCCCE
Confidence 8899999999999999999999999999999885 54421 11111222223567889999999997 7898
Q ss_pred EEE
Q 009842 340 CYR 342 (524)
Q Consensus 340 ~~~ 342 (524)
++.
T Consensus 374 vii 376 (505)
T TIGR00595 374 VII 376 (505)
T ss_pred EEE
Confidence 874
No 91
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=2.6e-24 Score=227.23 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=93.1
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC
Q 009842 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip 290 (524)
..+.++||||+|++.++.++..|... ++.+..+||.+...++..+...++.| .|+||||+|++|+|||
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~----------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~ 489 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLRE----------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIK 489 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHC----------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCC
Confidence 44679999999999999999999876 77888899999999998888888877 7999999999999999
Q ss_pred ---------CeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 291 ---------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 291 ---------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
++.+|+++..|. .... .||+||+||. .+|.++.+++.++.
T Consensus 490 l~~~v~~~GGL~vIit~~~ps------------------~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 490 LGKGVAELGGLAVIGTERMEN------------------SRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCccccccCCeEEEEecCCCC------------------cHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 999999876554 2223 7999999999 79999998876554
No 92
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.2e-24 Score=229.87 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=96.1
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCC--
Q 009842 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV-- 289 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidi-- 289 (524)
.+.++||||+|.+.++.++..|.+. ++.+..+||.+...++..+...+..| +|+||||+|++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~----------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l 494 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA----------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKL 494 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCc
Confidence 4679999999999999999999886 78888999999999988888888776 799999999999999
Q ss_pred -CCee-----EEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 290 -DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 290 -p~v~-----~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|+|. +||++++|. |...|.||+||+||. .+|.++.+++.++.
T Consensus 495 ~~~V~~~GGL~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 495 GEGVHELGGLAVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccccccCcEEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 7999 999988766 667899999999999 79999998876554
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=5.6e-24 Score=218.64 Aligned_cols=289 Identities=17% Similarity=0.203 Sum_probs=194.5
Q ss_pred CCCchHHHHHHHHHhcc----CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCccc
Q 009842 3 NLPILQYEETIVETVEQ----NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~----~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~ 78 (524)
...++.||++.++++.. ++..+++.|||+|||.+...++..... .+++++|++.++.|.++++.+.++..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~-- 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLN-- 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCc--
Confidence 34578999999999988 889999999999999877777776543 39999999999999998887776654
Q ss_pred ceEeEEeecccccCcccceeecchHHHHHH-HHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE-EEEE
Q 009842 79 EEVGYAIRFEDRTSERTLIKYLTDGVLLRE-ILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK-ILIT 156 (524)
Q Consensus 79 ~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~-l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~-ii~~ 156 (524)
..+|........... ..|.|+|...+.+. ........++++||+||||+ ..... . +.+..... ... ++++
T Consensus 108 ~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh-~~a~~-~----~~~~~~~~-~~~~~LGL 179 (442)
T COG1061 108 DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH-LPAPS-Y----RRILELLS-AAYPRLGL 179 (442)
T ss_pred cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc-CCcHH-H----HHHHHhhh-cccceeee
Confidence 222211111111111 56999999988876 23333444799999999994 33322 2 22222222 333 9999
Q ss_pred eccCChH------HHhhhcCCCCeeecC-------CcccceeEEecCCC-----CcchH---------------------
Q 009842 157 SATLDGE------KVSKFFSNCPTLNVP-------GKLYPVEILHSKER-----PTSYL--------------------- 197 (524)
Q Consensus 157 SATl~~~------~~~~~~~~~~~~~i~-------~~~~~v~~~~~~~~-----~~~~~--------------------- 197 (524)
|||++.. .+..++| ..+..+. +-.-|......... ...+.
T Consensus 180 TATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 180 TATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE 258 (442)
T ss_pred ccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Confidence 9997422 1333333 2233222 22223222211110 00000
Q ss_pred --------HHHHHHHHHHHhcC-CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCC
Q 009842 198 --------ESALKTAIDIHVRE-PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSP 268 (524)
Q Consensus 198 --------~~~~~~~~~~~~~~-~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 268 (524)
......+..+.... ...+++||+....++..++..+... +. +..+.+..+..+|..+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~----------~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP----------GI-VEAITGETPKEEREAILER 327 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC----------Cc-eEEEECCCCHHHHHHHHHH
Confidence 00011111111112 3569999999999999999988654 44 7779999999999999999
Q ss_pred CCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC
Q 009842 269 PPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 269 f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 335 (524)
|+.|.+++|+++.++..|+|+|++.++|... ..-|...|.||+||.=|.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~------------------~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILR------------------PTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeC------------------CCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999522 245888999999999996
No 94
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=4.2e-24 Score=200.88 Aligned_cols=301 Identities=19% Similarity=0.181 Sum_probs=205.2
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEE
Q 009842 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 7 ~~~~~~i~~~l~~~~~~ii~~pTGsGKT--t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~ 84 (524)
.+.|.+.+++...++.++++-|||.||| +++|.++. .+..+++.|...+..++.-.+ +.+|+.....-.-.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedqil~l-kqlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQILQL-KQLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHHHHHH-HHhCcchhhccCcc
Confidence 3456777888889999999999999999 78887764 567889999988887765555 33443322111100
Q ss_pred ee-----cc---cccCcccceeecchHHHHHH------HHhCCCCCCCceEEEeCCCcCC-----CChHH-HHHHHHHHH
Q 009842 85 IR-----FE---DRTSERTLIKYLTDGVLLRE------ILSNPDLSPYSVIILDEAHERS-----LNTDI-LLGLVKRLV 144 (524)
Q Consensus 85 ~~-----~~---~~~~~~~~i~~~T~g~l~~~------l~~~~~l~~~~~iIiDE~H~~~-----~~~~~-~~~~l~~i~ 144 (524)
.. .+ .......+++|.||+.+... +...-....+.+|-+||+|+.+ +.+|+ .++++ .
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~il---k 245 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGIL---K 245 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHH---H
Confidence 00 00 11234578999999977532 2222256678899999999844 33343 33333 3
Q ss_pred hhcccCcEEEEEeccCChHH---HhhhcCCCCeeecCC----cccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEE
Q 009842 145 NLRASKLKILITSATLDGEK---VSKFFSNCPTLNVPG----KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVL 217 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~~~~---~~~~~~~~~~~~i~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iL 217 (524)
+..+ +..+|+++||..... .++.++-...+.+.. .....++...+....+..++....+ .....+...|
T Consensus 246 rqf~-~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i---~~~f~gqsgi 321 (695)
T KOG0353|consen 246 RQFK-GAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLI---KGDFAGQSGI 321 (695)
T ss_pred HhCC-CCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHh---ccccCCCcce
Confidence 4555 888999999985533 233332111111111 1111222223333344444333222 2223345679
Q ss_pred EecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEe
Q 009842 218 IFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (524)
Q Consensus 218 VF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId 297 (524)
|||-++++++.++..|... ++....+|+.|.++++..+-+.+-.|++.|||||-.+++|||-|+|++||+
T Consensus 322 iyc~sq~d~ekva~alkn~----------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih 391 (695)
T KOG0353|consen 322 IYCFSQKDCEKVAKALKNH----------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH 391 (695)
T ss_pred EEEeccccHHHHHHHHHhc----------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe
Confidence 9999999999999999887 888889999999999999999999999999999999999999999999999
Q ss_pred CCcccceeecCCCCccccceeeecHHhHHh-------------------------------------------hccccCC
Q 009842 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQ-------------------------------------------RVGRAGR 334 (524)
Q Consensus 298 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~Q-------------------------------------------R~GRaGR 334 (524)
-.+|| |..+|.| ..|||||
T Consensus 392 hsl~k------------------sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragr 453 (695)
T KOG0353|consen 392 HSLPK------------------SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGR 453 (695)
T ss_pred cccch------------------hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccccc
Confidence 88877 4445555 7899999
Q ss_pred C-CCCeEEEecCchhh
Q 009842 335 T-RPGKCYRLYPSTVY 349 (524)
Q Consensus 335 ~-~~G~~~~l~~~~~~ 349 (524)
. .+..|+..|.-.+.
T Consensus 454 d~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 454 DDMKADCILYYGFADI 469 (695)
T ss_pred CCCcccEEEEechHHH
Confidence 9 78899988865554
No 95
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.9e-24 Score=222.57 Aligned_cols=106 Identities=24% Similarity=0.205 Sum_probs=90.3
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC--
Q 009842 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD-- 290 (524)
Q Consensus 213 ~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip-- 290 (524)
+.++||||+|++.++.+++.|.+. ++.+..+||.++..++..+...+.. ..|+||||+|++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~----------gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~ 540 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA----------GLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLE 540 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCc
Confidence 468999999999999999999876 7888999999776666655555544 46999999999999999
Q ss_pred -Cee-----EEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009842 291 -GVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 291 -~v~-----~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
+|. +||++++|. |...|.||+||+||. .+|.|+.+++.++
T Consensus 541 ~~V~~~GGLhVI~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 541 PGVAARGGLHVILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cchhhcCCCEEEEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 999988766 666889999999999 7999999988655
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.1e-23 Score=226.53 Aligned_cols=293 Identities=18% Similarity=0.216 Sum_probs=212.3
Q ss_pred HHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccc
Q 009842 12 TIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (524)
Q Consensus 12 ~i~~~l~~~~--~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~ 89 (524)
+|.+.+.+++ +=+|||.-|-|||-.+.-.+..... .|+.|.+++||-++|.|.++.+.+.+.- ....|+.-.+|..
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~GKQVAvLVPTTlLA~QHy~tFkeRF~~-fPV~I~~LSRF~s 682 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DGKQVAVLVPTTLLAQQHYETFKERFAG-FPVRIEVLSRFRS 682 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHhHHHHHHHHHHHhcC-CCeeEEEecccCC
Confidence 3344444444 4589999999999665555554443 4689999999999999999999876642 1233443334432
Q ss_pred c----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 90 R----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 90 ~----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
. .....+|+++|. +++..+-.+.+++++||||-|.-++.. |..++..+.++-++-||||
T Consensus 683 ~kE~~~il~~la~G~vDIvIGTH----rLL~kdv~FkdLGLlIIDEEqRFGVk~-------KEkLK~Lr~~VDvLTLSAT 751 (1139)
T COG1197 683 AKEQKEILKGLAEGKVDIVIGTH----RLLSKDVKFKDLGLLIIDEEQRFGVKH-------KEKLKELRANVDVLTLSAT 751 (1139)
T ss_pred HHHHHHHHHHHhcCCccEEEech----HhhCCCcEEecCCeEEEechhhcCccH-------HHHHHHHhccCcEEEeeCC
Confidence 2 235789999998 455666789999999999999433333 2222333348899999999
Q ss_pred CChHHHhhhcCC---CCeeec-CCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 009842 160 LDGEKVSKFFSN---CPTLNV-PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (524)
Q Consensus 160 l~~~~~~~~~~~---~~~~~i-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~ 235 (524)
+=+..+.--+.+ -.++.. |.+.+||+++..+.... .+.+++.. .+ ..+|++-.-.|..++++++++.|++
T Consensus 752 PIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~-~ireAI~R---El--~RgGQvfYv~NrV~~Ie~~~~~L~~ 825 (1139)
T COG1197 752 PIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL-LIREAILR---EL--LRGGQVFYVHNRVESIEKKAERLRE 825 (1139)
T ss_pred CCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChH-HHHHHHHH---HH--hcCCEEEEEecchhhHHHHHHHHHH
Confidence 955544433322 223333 44678998887664432 22222221 11 4578999999999999999999999
Q ss_pred HhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcccc
Q 009842 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l 315 (524)
.. |...+..-||.|+..+-++++..|-+|+.+|||||.|.|+|||||+++.+|-- +.
T Consensus 826 LV--------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe--------~A------- 882 (1139)
T COG1197 826 LV--------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE--------RA------- 882 (1139)
T ss_pred hC--------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe--------cc-------
Confidence 85 67889999999999999999999999999999999999999999999887731 11
Q ss_pred ceeeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009842 316 DVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 316 ~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
...-.++..|-.||+||. ..|+||.+|++..
T Consensus 883 --D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 883 --DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred --ccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 112456789999999999 7899999997644
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=8.9e-24 Score=220.36 Aligned_cols=324 Identities=15% Similarity=0.191 Sum_probs=209.3
Q ss_pred hHHHHHHH--HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHH---HhCCcccceE
Q 009842 7 LQYEETIV--ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (524)
Q Consensus 7 ~~~~~~i~--~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~---~~~~~~~~~v 81 (524)
|..|.+-+ ..+.++++++...||+.|||......+..........++.+.|....+.+....+.. ..|..+....
T Consensus 225 fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~ 304 (1008)
T KOG0950|consen 225 FEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYA 304 (1008)
T ss_pred HHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhc
Confidence 44444433 346689999999999999996666665554444456677777766666666555533 2333333322
Q ss_pred eEEeeccccc-CcccceeecchHH---HHHHHHhCCCCCCCceEEEeCCCcCCCCh--H-HHHHHHHHHHh-hcccCcEE
Q 009842 82 GYAIRFEDRT-SERTLIKYLTDGV---LLREILSNPDLSPYSVIILDEAHERSLNT--D-ILLGLVKRLVN-LRASKLKI 153 (524)
Q Consensus 82 g~~~~~~~~~-~~~~~i~~~T~g~---l~~~l~~~~~l~~~~~iIiDE~H~~~~~~--~-~~~~~l~~i~~-~~~~~~~i 153 (524)
| ++.... .....+.+||-++ +.+.++....+..++.||+||.|. ..+. + .+..++.+++- .....+++
T Consensus 305 g---~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~~~~~~i 380 (1008)
T KOG0950|consen 305 G---RFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENLETSVQI 380 (1008)
T ss_pred c---cCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccchHHHHHHHHHHHhccccceeE
Confidence 2 222222 2456788899874 455566667889999999999995 2222 2 23334444443 33335689
Q ss_pred EEEeccC-ChHHHhhhcCCCCeeecCCcccceeEEecCCCCc-ch-HHHHHHHHHH----HH-------------h-cCC
Q 009842 154 LITSATL-DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPT-SY-LESALKTAID----IH-------------V-REP 212 (524)
Q Consensus 154 i~~SATl-~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~-~~-~~~~~~~~~~----~~-------------~-~~~ 212 (524)
|+||||+ |.+.++.|++ +.+.....|+.|...+....... +. -...+..+-. .. . ..+
T Consensus 381 IGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e 459 (1008)
T KOG0950|consen 381 IGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPE 459 (1008)
T ss_pred eeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhc
Confidence 9999999 5578899986 33333333333332221111000 00 0111111110 00 0 112
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhcCC----------------------------CCCCCeEEEEecCCCCHHHHhc
Q 009842 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDE----------------------------GSCMDAVILPLHGSLPPEMQVR 264 (524)
Q Consensus 213 ~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~----------------------------~~~~~~~v~~lh~~l~~~~r~~ 264 (524)
+.++|||||++..|+.++..+......... .....+++.+||+|++.++|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 346999999999999999887654422100 0123567889999999999999
Q ss_pred ccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC---CCCeEE
Q 009842 265 VFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCY 341 (524)
Q Consensus 265 v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~ 341 (524)
+...|++|...|++||++++.|++.|+.+|+|-+-+ ......+..+|.||+|||||. .-|.++
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~Gdsi 605 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGDSI 605 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcceE
Confidence 999999999999999999999999999999996322 223456888999999999998 569999
Q ss_pred EecCchhh
Q 009842 342 RLYPSTVY 349 (524)
Q Consensus 342 ~l~~~~~~ 349 (524)
.++.+.+.
T Consensus 606 LI~k~~e~ 613 (1008)
T KOG0950|consen 606 LIIKSSEK 613 (1008)
T ss_pred EEeeccch
Confidence 99877664
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=2.6e-23 Score=218.22 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEec
Q 009842 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (524)
Q Consensus 201 ~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT 280 (524)
+..+...+ ..+.++||||++.+.++.+++.|.+. ++....+||. +.+|+..+..|..+...|+|||
T Consensus 395 ~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~----------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIAT 460 (745)
T TIGR00963 395 VDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER----------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIAT 460 (745)
T ss_pred HHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEe
Confidence 33443343 44679999999999999999999886 7777889998 7788888889999999999999
Q ss_pred CccccccCCCC-------eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 281 NIAETSLTVDG-------VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 281 ~i~e~gidip~-------v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
|+|++|+||+. ..+||++.+|. |...+.||.||+||. .||.+..+.+.++.
T Consensus 461 nmAgRGtDI~l~~V~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 461 NMAGRGTDIKLEEVKELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred ccccCCcCCCccchhhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999998 45999987655 777899999999999 78998888877654
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=1.7e-22 Score=225.37 Aligned_cols=307 Identities=19% Similarity=0.275 Sum_probs=189.7
Q ss_pred CCchHHHHHHHHHhc----c-CCEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcc
Q 009842 4 LPILQYEETIVETVE----Q-NPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (524)
Q Consensus 4 lpi~~~~~~i~~~l~----~-~~~~ii~~pTGsGKTt~l~~~l~~-~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~ 77 (524)
+..+.||.+.++.+. + .+..+++.+||||||..+..++.. .......+|+++.|+..++.|..+.+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 345778888776654 2 456888999999999333333332 22233468999999999999998877543 2211
Q ss_pred cceEe--EEee-c-ccccCcccceeecchHHHHHHHHhC------CCCCCCceEEEeCCCcCCCChH-------H-----
Q 009842 78 GEEVG--YAIR-F-EDRTSERTLIKYLTDGVLLREILSN------PDLSPYSVIILDEAHERSLNTD-------I----- 135 (524)
Q Consensus 78 ~~~vg--~~~~-~-~~~~~~~~~i~~~T~g~l~~~l~~~------~~l~~~~~iIiDE~H~~~~~~~-------~----- 135 (524)
...+. +.+. . +.......+|+++|...+.+.+... ..+..+++||+|||| |+...+ .
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 11110 1111 1 1112345789999999887765321 357789999999999 664211 0
Q ss_pred --HHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcCCCCeeec-------CCccc----ceeEE---------ecCC--
Q 009842 136 --LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNV-------PGKLY----PVEIL---------HSKE-- 191 (524)
Q Consensus 136 --~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~~~~~~~~i-------~~~~~----~v~~~---------~~~~-- 191 (524)
.....+.++... +...|++|||+... ...+||. ++... +|-.. |..+. +...
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 122345555543 45789999998543 3455653 22211 11111 11111 0000
Q ss_pred ---------------CCc--chH--------------HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 009842 192 ---------------RPT--SYL--------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (524)
Q Consensus 192 ---------------~~~--~~~--------------~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~ 240 (524)
... ++. ...+..+++......++++||||.++++|+.+++.|.+.+...
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 000 000 0111222222222345899999999999999999998765332
Q ss_pred CCCCCCCeEEEEecCCCCHHHHhcccCCCCCCce-EEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceee
Q 009842 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR-RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (524)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~-~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~ 319 (524)
.... ....+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||.... +
T Consensus 726 ~~~~-~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------v 784 (1123)
T PRK11448 726 YGQV-EDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------V 784 (1123)
T ss_pred cCCc-CccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------C
Confidence 1110 1234556888875 45678999998875 79999999999999999999996432 3
Q ss_pred ecHHhHHhhccccCCCCC
Q 009842 320 ISKVQANQRVGRAGRTRP 337 (524)
Q Consensus 320 ~s~~~~~QR~GRaGR~~~ 337 (524)
-|...|+||+||+.|..+
T Consensus 785 kS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 785 RSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCHHHHHHHHhhhccCCc
Confidence 488899999999999966
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=1.9e-21 Score=211.61 Aligned_cols=307 Identities=20% Similarity=0.148 Sum_probs=179.9
Q ss_pred chHHHHHHHHHhc---cCC-EEEEEcCCCCcHHHHHHHHHHhcCC---CCCcEEEEcccchhHHHHHHHHHHHHhCCccc
Q 009842 6 ILQYEETIVETVE---QNP-VVVVIGETGSGKSTQLSQILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (524)
Q Consensus 6 i~~~~~~i~~~l~---~~~-~~ii~~pTGsGKTt~l~~~l~~~~~---~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~ 78 (524)
.+..|+.+++.+. ... .+++.||||+|||+....+...... ....+++++.|++.+..++++++.+..+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 4556666666554 334 8899999999999444333332222 24669999999999999999998765543221
Q ss_pred --c-eEeEEee----cccc------------cCcccceeecchHHHHHHHHhCCCC-----CCCceEEEeCCCcCCCChH
Q 009842 79 --E-EVGYAIR----FEDR------------TSERTLIKYLTDGVLLREILSNPDL-----SPYSVIILDEAHERSLNTD 134 (524)
Q Consensus 79 --~-~vg~~~~----~~~~------------~~~~~~i~~~T~g~l~~~l~~~~~l-----~~~~~iIiDE~H~~~~~~~ 134 (524)
. ..|.... .... ...-..+.++|+-............ --.+++|+||+|...-+.
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~- 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET- 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-
Confidence 1 1221110 0000 0001122223333222211111111 134789999999544442
Q ss_pred HHHHHHHHHHhhcccCcEEEEEeccCChH---HHhhhcCCCCeeecCCcccceeE--EecCCCCcchHHHH--HHHHHHH
Q 009842 135 ILLGLVKRLVNLRASKLKILITSATLDGE---KVSKFFSNCPTLNVPGKLYPVEI--LHSKERPTSYLESA--LKTAIDI 207 (524)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~ii~~SATl~~~---~~~~~~~~~~~~~i~~~~~~v~~--~~~~~~~~~~~~~~--~~~~~~~ 207 (524)
....++..+......+.++|+||||+|+. .+..+++....+.......+... ........+..... .......
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 434 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELIS 434 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcch
Confidence 22222222222233478999999999874 35555543322222111111000 00001111111110 0111111
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCC----CCCceEEEEecCcc
Q 009842 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP----PPNCRRFIVSTNIA 283 (524)
Q Consensus 208 ~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f----~~g~~~ilvaT~i~ 283 (524)
.....+++++|-|||+..|.++++.|++.. . .+..+||.+...+|.+.++.. ..+.-.|+|||++.
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---------~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVI 504 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKG---------P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVI 504 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcC---------C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEE
Confidence 223556899999999999999999999872 2 788999999999998777632 45678999999999
Q ss_pred ccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEec
Q 009842 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLY 344 (524)
Q Consensus 284 e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~ 344 (524)
|.|+|+. .+++| +.+.+..+.+||+||.+|.+ +|..|..-
T Consensus 505 EagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 505 EAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred EEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEee
Confidence 9999998 66666 34567889999999999985 56666544
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=1.3e-20 Score=205.96 Aligned_cols=316 Identities=16% Similarity=0.176 Sum_probs=193.6
Q ss_pred CCchHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 4 LPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~--~~~~ii~~pTGsGKTt~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
.-+++||..+...+.. ...+++.-+.|-|||..+-.++..... ....++++++|. .+..|+...+.+.++......
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 3467788888766543 345788899999999666555544322 223588999996 677888888877777543211
Q ss_pred EeEE---eecc-cccCcccceeecchHHHHHH--HHhCCCCCCCceEEEeCCCcCCC---ChHHHHHHHHHHHhhcccCc
Q 009842 81 VGYA---IRFE-DRTSERTLIKYLTDGVLLRE--ILSNPDLSPYSVIILDEAHERSL---NTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 81 vg~~---~~~~-~~~~~~~~i~~~T~g~l~~~--l~~~~~l~~~~~iIiDE~H~~~~---~~~~~~~~l~~i~~~~~~~~ 151 (524)
-+.. ...+ ...-...+++++|.+.+.+. ......-..+++||+||||.... ........++.+... ..
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~---~~ 306 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV---IP 306 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc---cC
Confidence 1100 0000 01112467899998877641 11111234789999999995221 111122233333321 34
Q ss_pred EEEEEeccCCh---HH-Hh--hh-----cC------------------------CCCe----------------------
Q 009842 152 KILITSATLDG---EK-VS--KF-----FS------------------------NCPT---------------------- 174 (524)
Q Consensus 152 ~ii~~SATl~~---~~-~~--~~-----~~------------------------~~~~---------------------- 174 (524)
.++++|||+.. +. ++ ++ |+ +.+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 68999999832 11 10 00 00 0000
Q ss_pred -----------------------------eecCC----cccceeEEec--CCCCcchHH---------------------
Q 009842 175 -----------------------------LNVPG----KLYPVEILHS--KERPTSYLE--------------------- 198 (524)
Q Consensus 175 -----------------------------~~i~~----~~~~v~~~~~--~~~~~~~~~--------------------- 198 (524)
+.-.. ..+|...... -.....|..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 00000 0011000000 000111111
Q ss_pred ------------HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhccc
Q 009842 199 ------------SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVF 266 (524)
Q Consensus 199 ------------~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 266 (524)
..+..+..+.......++||||+++..+..+++.|... .++.+..+||+|+..+|.+++
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~---------~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER---------EGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc---------cCeeEEEEECCCCHHHHHHHH
Confidence 11122333334445679999999999999999999654 378899999999999999999
Q ss_pred CCCCCC--ceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCC--eEE
Q 009842 267 SPPPPN--CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPG--KCY 341 (524)
Q Consensus 267 ~~f~~g--~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G--~~~ 341 (524)
+.|+++ ..+|+|||+++++|+|++.+++||++++|. +...|.||+||+||. +.| .+|
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V~i~ 599 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDIQIH 599 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEEE
Confidence 999874 699999999999999999999999988755 667899999999998 334 456
Q ss_pred EecCchhhh
Q 009842 342 RLYPSTVYH 350 (524)
Q Consensus 342 ~l~~~~~~~ 350 (524)
.++.+...+
T Consensus 600 ~~~~~~t~~ 608 (956)
T PRK04914 600 VPYLEGTAQ 608 (956)
T ss_pred EccCCCCHH
Confidence 666554443
No 102
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=201.74 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=110.8
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcc---cc-
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL---GE- 79 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~---~~- 79 (524)
--.+.|.+.+..+..++.++|+|||.+|||.+-+..+... .....+.+++..|+++++.|++..+...+.... +.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 3356889999999999999999999999994333333222 122456889999999999999888765553221 11
Q ss_pred eEeEEeecccccCcccceeecchHHHHHHHHhCC----CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 80 ~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~----~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
..|.-.+.-+...-+++|+++-|+.+..++.+.| +..+++++|+||+|..+-..+-+. ..+++... .+.+++
T Consensus 591 l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~--~Eqll~li--~CP~L~ 666 (1330)
T KOG0949|consen 591 LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLL--WEQLLLLI--PCPFLV 666 (1330)
T ss_pred hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchH--HHHHHHhc--CCCeeE
Confidence 1121111112223479999999999999887643 899999999999996443222111 12222222 577999
Q ss_pred EeccC-ChHHHhhhcC
Q 009842 156 TSATL-DGEKVSKFFS 170 (524)
Q Consensus 156 ~SATl-~~~~~~~~~~ 170 (524)
+|||+ |++.+..|++
T Consensus 667 LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLN 682 (1330)
T ss_pred EecccCCHHHHHHHHH
Confidence 99999 7788888885
No 103
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.2e-19 Score=162.56 Aligned_cols=278 Identities=18% Similarity=0.189 Sum_probs=176.2
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-CCcEEEEcccchhHHHHHHHH---HHHHhC-Cccc
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARR---VAQELG-VRLG 78 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~~-~~~~i~~~~P~r~la~~~~~~---~~~~~~-~~~~ 78 (524)
|---+++.|.+++. |-+++..|..|-||| .++..-+....+. +...+++.+.+|++|-|+.+. +++.+. .++.
T Consensus 65 psevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkva 143 (387)
T KOG0329|consen 65 PSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 143 (387)
T ss_pred chHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEE
Confidence 33345556666664 667789999999999 3333344444333 334778899999999998764 444442 3333
Q ss_pred ceEeE-Eeeccc-ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 79 EEVGY-AIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 79 ~~vg~-~~~~~~-~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
...|. .+..+. ....-.+|+++|||+++.+.++.. .+.++.++|+||++...-..|.... +..+.+..|.+.|++.
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRD-vQEifr~tp~~KQvmm 222 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMM 222 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHH-HHHHhhcCcccceeee
Confidence 33331 111111 112357899999999999887766 7999999999999942233444444 6777777888899999
Q ss_pred EeccCChHH---HhhhcCCCCeeecCCc----ccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHH
Q 009842 156 TSATLDGEK---VSKFFSNCPTLNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (524)
Q Consensus 156 ~SATl~~~~---~~~~~~~~~~~~i~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~ 228 (524)
+|||++.+. ..+|+.++-.+.++.. .+....+|..-... ..-..+.+++..-+-.+++||+.+...+
T Consensus 223 fsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~----eKNrkl~dLLd~LeFNQVvIFvKsv~Rl-- 296 (387)
T KOG0329|consen 223 FSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN----EKNRKLNDLLDVLEFNQVVIFVKSVQRL-- 296 (387)
T ss_pred eeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh----hhhhhhhhhhhhhhhcceeEeeehhhhh--
Confidence 999997652 3345444333332221 11111122111110 0111122222222345788887665430
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecC
Q 009842 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (524)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~ 308 (524)
+ | .++ +|||+++++|+||..|+.|+|+++|.
T Consensus 297 -----------------------------~----------f--~kr--~vat~lfgrgmdiervNi~~NYdmp~------ 327 (387)
T KOG0329|consen 297 -----------------------------S----------F--QKR--LVATDLFGRGMDIERVNIVFNYDMPE------ 327 (387)
T ss_pred -----------------------------h----------h--hhh--hHHhhhhccccCcccceeeeccCCCC------
Confidence 0 1 122 89999999999999999999999876
Q ss_pred CCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhhhh
Q 009842 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (524)
Q Consensus 309 ~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 351 (524)
+..+|.||.|||||. ..|.++.+.+.+.-..
T Consensus 328 ------------~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 328 ------------DSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred ------------CchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 555899999999999 6789998876655443
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.6e-19 Score=187.35 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEe
Q 009842 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (524)
Q Consensus 200 ~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilva 279 (524)
.+..+...+ ..+.|+||||+|++.++.+++.|.+. ++....+||.+...++..+.+.|++|. |+||
T Consensus 433 v~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~L~~~----------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIA 498 (896)
T PRK13104 433 IIEDVRECG--VRKQPVLVGTVSIEASEFLSQLLKKE----------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIA 498 (896)
T ss_pred HHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEe
Confidence 344444444 45679999999999999999999886 788888999999999999999999994 9999
Q ss_pred cCccccccCCC
Q 009842 280 TNIAETSLTVD 290 (524)
Q Consensus 280 T~i~e~gidip 290 (524)
||+|++|+||-
T Consensus 499 TNmAGRGtDI~ 509 (896)
T PRK13104 499 TNMAGRGTDIV 509 (896)
T ss_pred ccCccCCccee
Confidence 99999999985
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.6e-19 Score=187.44 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=95.5
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCC-
Q 009842 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV- 289 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidi- 289 (524)
..+.++||||+|+..++.++..|.+. ++....+||.+...++..+...+++|. |+||||+|++|.||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~----------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~ 505 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA----------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIK 505 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCC
Confidence 35679999999999999999999886 677788999999999999988888876 99999999999999
Q ss_pred --CCee-----EEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 290 --DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 290 --p~v~-----~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
++|. +||++.+|. |...+.||.||+||. .||.+..+++-++.
T Consensus 506 l~~~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 506 LGPGVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCcchhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 4899 999877654 777889999999999 79999888776643
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.2e-18 Score=185.68 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=86.1
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC
Q 009842 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip 290 (524)
..+.++||||+|++.++.+++.|.+. ++....+||. +.+|+..+..|+.+...|+||||+|++|+||+
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~----------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA----------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC----------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 45679999999999999999999886 7778889995 77888889999999999999999999999997
Q ss_pred Ce---eEEEeCCccc----------------ceeecCCCCccccce-eeecHHhHHhhccccCCC-CCCeEEEecCchh
Q 009842 291 GV---VYVIDCGYVK----------------QRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (524)
Q Consensus 291 ~v---~~VId~g~~k----------------~~~~~~~~~~~~l~~-~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 348 (524)
== .+.....+.. ...--...|+....+ .+-|.--=.|-.|||||. .||.+-.+.|-++
T Consensus 496 LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 496 LGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 21 0000000000 000001122222222 234555556999999999 6887766555443
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.78 E-value=2.9e-17 Score=175.25 Aligned_cols=115 Identities=19% Similarity=0.143 Sum_probs=99.6
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC
Q 009842 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip 290 (524)
..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|...|+|||+++++|+|+|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 44668999999999999999999886 77888999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchh
Q 009842 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTV 348 (524)
Q Consensus 291 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~ 348 (524)
++++||.++--+ ...|-+..+|+||+|||||..+|+|+.+++..+
T Consensus 510 ~v~lVvi~Dadi-------------fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 510 EVSLVAILDADK-------------EGFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred CCcEEEEeCccc-------------ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 999999754111 112347779999999999999999998876543
No 108
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.78 E-value=6.2e-19 Score=143.36 Aligned_cols=95 Identities=36% Similarity=0.630 Sum_probs=68.5
Q ss_pred HHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhhCCHHHHHHHHHHhccCCcccCCCCchhHHH--hhcc
Q 009842 399 DALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKK--RKHT 476 (524)
Q Consensus 399 ~al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~--~~~~ 476 (524)
.|++.|+.+||||++|+||++|+.|+.||++|++||+|+.|..++|.+++++|+|++++.++|..+.+.++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999998765544332 2333
Q ss_pred CCC-----CCCCCCCCCHHHHH
Q 009842 477 PLE-----LPDGSGWGDHIQLL 493 (524)
Q Consensus 477 ~~~-----~~~~~~~~D~~~~~ 493 (524)
+|. ....+..|||++++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 330 01237889999986
No 109
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=6.8e-18 Score=166.80 Aligned_cols=282 Identities=22% Similarity=0.262 Sum_probs=181.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCccccee
Q 009842 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 19 ~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 98 (524)
+.++++-+|||.||||+-+.+-+... ..-++.-|.|.+|.+++.++ ...|..+....|...++.......+..+
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hv 263 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHV 263 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccce
Confidence 34678889999999997665555432 34467779999999999998 5678888888886666554444456677
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC-hHHHhhhcCCCCeeec
Q 009842 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD-GEKVSKFFSNCPTLNV 177 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~-~~~~~~~~~~~~~~~i 177 (524)
-||-+|.- .-..+++.||||++. +-+.+-.-++-+.++......+.+-+=-|-++ ...+.+--|+...+.-
T Consensus 264 ScTVEM~s-------v~~~yeVAViDEIQm-m~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~ 335 (700)
T KOG0953|consen 264 SCTVEMVS-------VNTPYEVAVIDEIQM-MRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVRE 335 (700)
T ss_pred EEEEEEee-------cCCceEEEEehhHHh-hcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEe
Confidence 77776542 345689999999984 33333222222333332222222222111111 0112222122222221
Q ss_pred CCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCC
Q 009842 178 PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSL 257 (524)
Q Consensus 178 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l 257 (524)
-.|..|+.+ .+ .++.-...-.+|+++|=. |+++|..+...+.+. .+..+..+||+|
T Consensus 336 YeRl~pL~v----------~~----~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~---------g~~k~aVIYGsL 391 (700)
T KOG0953|consen 336 YERLSPLVV----------EE----TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA---------GNHKCAVIYGSL 391 (700)
T ss_pred ecccCccee----------hh----hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh---------cCcceEEEecCC
Confidence 122222211 11 122222334467766643 788999999999887 355588899999
Q ss_pred CHHHHhcccCCCCC--CceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC
Q 009842 258 PPEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 258 ~~~~r~~v~~~f~~--g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 335 (524)
|++.|..--..|.+ +..+|+||||+.++|+|+. |+-||-+.+.| |+ .-...+++.++..|-+|||||.
T Consensus 392 PPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf 461 (700)
T KOG0953|consen 392 PPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRF 461 (700)
T ss_pred CCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhccccc
Confidence 99998777677765 8999999999999999997 88888766655 22 3445688999999999999998
Q ss_pred ----CCCeEEEecCchh
Q 009842 336 ----RPGKCYRLYPSTV 348 (524)
Q Consensus 336 ----~~G~~~~l~~~~~ 348 (524)
..|.+-.|+.++-
T Consensus 462 ~s~~~~G~vTtl~~eDL 478 (700)
T KOG0953|consen 462 GSKYPQGEVTTLHSEDL 478 (700)
T ss_pred ccCCcCceEEEeeHhhH
Confidence 4588888776543
No 110
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.76 E-value=2.2e-18 Score=165.08 Aligned_cols=271 Identities=21% Similarity=0.238 Sum_probs=174.4
Q ss_pred CcEEEEcccchhHHHHHHHHHHHHhCC------cccceEeEE-ee-cccccCcccceeecchHHHHHHHHhCC-CCCCCc
Q 009842 49 SGIIGVTQPRRVAAVSVARRVAQELGV------RLGEEVGYA-IR-FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYS 119 (524)
Q Consensus 49 ~~~i~~~~P~r~la~~~~~~~~~~~~~------~~~~~vg~~-~~-~~~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~ 119 (524)
....+++.|.|+++.|....+.+..-. +.-..+|.. .+ ........++|++.|||+++..+.... .+..+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 447788899999999988866433211 111223311 11 112234578999999999998886654 788899
Q ss_pred eEEEeCCCcCC--CChHHHHHHHHHHHhhcc--cCcEEEEEeccCCh---HHHhh-hcCCCCeeecCC-cccceeEEecC
Q 009842 120 VIILDEAHERS--LNTDILLGLVKRLVNLRA--SKLKILITSATLDG---EKVSK-FFSNCPTLNVPG-KLYPVEILHSK 190 (524)
Q Consensus 120 ~iIiDE~H~~~--~~~~~~~~~l~~i~~~~~--~~~~ii~~SATl~~---~~~~~-~~~~~~~~~i~~-~~~~v~~~~~~ 190 (524)
.+++||++... .++|++..+-..+-.... ..++.++.|||+.. ..+.+ .+.-+.-+...+ ...|-++++..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 99999998311 233443333222222221 26889999999853 22221 110011111111 01111111100
Q ss_pred --------------------------------CCCcchHHHHHHHH-----HHHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 009842 191 --------------------------------ERPTSYLESALKTA-----IDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (524)
Q Consensus 191 --------------------------------~~~~~~~~~~~~~~-----~~~~~~~~~g~iLVF~~~~~~~~~~~~~L 233 (524)
....+...++...+ +.........+.++||.|+.+|..+-+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 00111111111111 11112234568999999999999999998
Q ss_pred HHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCcc
Q 009842 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~ 313 (524)
.+... ..+.+.++|++..+.+|+.-++.|+++..+.++||+++++|+||.++-++|+.-+|.
T Consensus 526 ~qkgg-------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd----------- 587 (725)
T KOG0349|consen 526 NQKGG-------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD----------- 587 (725)
T ss_pred HHcCC-------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc-----------
Confidence 87632 368899999999999999999999999999999999999999999999999966655
Q ss_pred ccceeeecHHhHHhhccccCCC-CCCeEEEec
Q 009842 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 344 (524)
.+.+|+||+||+||. +-|.++.|.
T Consensus 588 -------~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 588 -------DKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred -------ccchhhhhhhccchhhhcceeEEEe
Confidence 455999999999999 779888876
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.7e-17 Score=172.86 Aligned_cols=311 Identities=19% Similarity=0.215 Sum_probs=195.9
Q ss_pred CCchHHHHHHHHHhccC----CEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCccc
Q 009842 4 LPILQYEETIVETVEQN----PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~----~~~ii~~pTGsGKT-t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~ 78 (524)
+.+...|+.+.+.+.+. ...++.|-|||||| .++..+..... .|+.++++.|-..+..|+..++...+|..++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 45666777777777655 77899999999999 44444433322 4779999999999999999999999997766
Q ss_pred ceEeEEee---c---ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH-----HHHHHHHHHhhc
Q 009842 79 EEVGYAIR---F---EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLR 147 (524)
Q Consensus 79 ~~vg~~~~---~---~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~-----~~~~l~~i~~~~ 147 (524)
.....-.. . ......+.+|+++|---+. ..+.++++|||||-|+.+...+- ... +..+....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd-vA~~Ra~~ 347 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD-VAVLRAKK 347 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHH-HHHHHHHH
Confidence 65442111 1 1122456788888753221 15889999999999975543221 111 22222222
Q ss_pred ccCcEEEEEeccCChHHHhhhcCC-CCeeecCCccc---c--eeEEecCCCCcc----hHHHHHHHHHHHHhcCCCCCEE
Q 009842 148 ASKLKILITSATLDGEKVSKFFSN-CPTLNVPGKLY---P--VEILHSKERPTS----YLESALKTAIDIHVREPEGDVL 217 (524)
Q Consensus 148 ~~~~~ii~~SATl~~~~~~~~~~~-~~~~~i~~~~~---~--v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~iL 217 (524)
.+.++|+-|||+.-+.+.+...+ ...+.+..|.. + +.+........+ +-...++.+.+.. +.+.++|
T Consensus 348 -~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~l 424 (730)
T COG1198 348 -ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVL 424 (730)
T ss_pred -hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEE
Confidence 48899999999987665544332 22333333322 2 222222211111 1122222222221 2334666
Q ss_pred EecCcHH------------------------------------------------------------HHHHHHHHHHHHh
Q 009842 218 IFMTGQD------------------------------------------------------------DIEKLVSKLEDKI 237 (524)
Q Consensus 218 VF~~~~~------------------------------------------------------------~~~~~~~~L~~~~ 237 (524)
+|+|.|. .++++.+.|.+.+
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 6666554 4555666666654
Q ss_pred hhcCCCCCCCeEEEEecCCCCHHH--HhcccCCCCCCceEEEEecCccccccCCCCeeEEE--eCCcccceeecCCCCcc
Q 009842 238 RSLDEGSCMDAVILPLHGSLPPEM--QVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMY 313 (524)
Q Consensus 238 ~~~~~~~~~~~~v~~lh~~l~~~~--r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VI--d~g~~k~~~~~~~~~~~ 313 (524)
|+..+..+.++.+... -+..+..|.+|+.+|||.|++++.|.|+|+++.|. |.+ ...+..
T Consensus 505 --------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD--------~~L~~~ 568 (730)
T COG1198 505 --------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDAD--------TGLGSP 568 (730)
T ss_pred --------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEech--------hhhcCC
Confidence 5677777877766433 35678899999999999999999999999999885 322 122233
Q ss_pred ccceeeecHHhHHhhccccCCC-CCCeEEE
Q 009842 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYR 342 (524)
Q Consensus 314 ~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 342 (524)
+++...-....+.|-+|||||. .+|.++.
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 3444445667888999999998 8887664
No 112
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.74 E-value=1e-19 Score=187.66 Aligned_cols=445 Identities=7% Similarity=-0.146 Sum_probs=319.6
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC----CcEEEEcccchhHHHHHHHHHHHHhCCcccc
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK----SGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~----~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~ 79 (524)
+|..+..+.|++++..+.+.++-+.|||||+++.++.+.+..... -+.++..+|++..|........-+.+..++.
T Consensus 405 gk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvll 484 (1282)
T KOG0921|consen 405 GKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLL 484 (1282)
T ss_pred cchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhh
Confidence 578889999999999999999999999999999999888654322 2367788999988888777766666666666
Q ss_pred eEeEEeeccccc-CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009842 80 EVGYAIRFEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 80 ~vg~~~~~~~~~-~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
..+|...+.... ..+..+..+|.+.++..+..+ +......+.||.|++++++|++..++..+ +++.++++
T Consensus 485 r~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~-------p~~~~~gr 555 (1282)
T KOG0921|consen 485 RMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI-------PDVTVHGR 555 (1282)
T ss_pred hhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc-------cceeeccc
Confidence 666665554433 244556678888888777653 45677889999999999999988765543 35689999
Q ss_pred cCChHHHhhhcCCCCeeecCCcccceeEEec------------------------C------------CCCcchHHHHHH
Q 009842 159 TLDGEKVSKFFSNCPTLNVPGKLYPVEILHS------------------------K------------ERPTSYLESALK 202 (524)
Q Consensus 159 Tl~~~~~~~~~~~~~~~~i~~~~~~v~~~~~------------------------~------------~~~~~~~~~~~~ 202 (524)
|.|...|-.++-.++...++++.++.+-.+. . .......+....
T Consensus 556 t~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~ 635 (1282)
T KOG0921|consen 556 TFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLN 635 (1282)
T ss_pred cccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHh
Confidence 9998776665555666666655544332110 0 011234333333
Q ss_pred HHHH------HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEE
Q 009842 203 TAID------IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (524)
Q Consensus 203 ~~~~------~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~i 276 (524)
.+.. +..-.+++..|+|++++.-.......+... .-+ .+....+...|..+...+++.+.+....+.+..
T Consensus 636 ~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~il---p~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 636 DIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EIL---PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred hhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-ccc---cchhhcccHhhhhccCcccccccccccccceee
Confidence 2221 223467889999999999888777766554 111 123456778899999999999999999999999
Q ss_pred EEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhCcCC
Q 009842 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDV 356 (524)
Q Consensus 277 lvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 356 (524)
...|...+..|.+.++.+|++++..+.+.+......+.....|.+...-.||.||++|...+.||.+++...+.. |..+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999999999999999999999999998888777666666777888888889999999999999999999999988 9999
Q ss_pred CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHH
Q 009842 357 TVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRML 436 (524)
Q Consensus 357 ~~pei~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~~al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l 436 (524)
+.|||.+......++.++.+-.+.......+.+.+|+......+...+....+.+.+-.+|.+++.....|+.|..+++.
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~ 870 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGA 870 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhcc
Confidence 99999998877666666655444311222344566655554444444444333333446889999999999999999887
Q ss_pred HHHhhhCCHHHHHHHHHHhccCCccc
Q 009842 437 MEANEFGCLSQALTVAAMLSAETTLL 462 (524)
Q Consensus 437 ~~~~~~~c~~~~l~i~a~~~~~~~f~ 462 (524)
...+.+-..+-...++++.-...+|.
T Consensus 871 ~~~m~~~as~~s~~~~~~~~~~~~~r 896 (1282)
T KOG0921|consen 871 GSVMCDVASAMSFPTPFVPREKHHSR 896 (1282)
T ss_pred chhhhhhhcccccccccccccccccc
Confidence 77665544444444444433344443
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.72 E-value=3.9e-16 Score=164.62 Aligned_cols=275 Identities=16% Similarity=0.124 Sum_probs=182.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCC--cccceE
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV--RLGEEV 81 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~--~~~~~v 81 (524)
.+.|+.|.-....+..|+...++||||.||||+...+...... +|++++++.||..++.|.++++.+.... .....+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 4778999999999999999999999999999887766665543 4579999999999999999998644311 112222
Q ss_pred eEEeecc---------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCc---CCCChHHHHHHH---------
Q 009842 82 GYAIRFE---------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHE---RSLNTDILLGLV--------- 140 (524)
Q Consensus 82 g~~~~~~---------~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~---~~~~~~~~~~~l--------- 140 (524)
.|..... ...+.+.+|+++|...|.+....-.. -++++|++|.+|. .+-+.|.++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 2332211 11235789999999888776643222 4799999999985 112222221111
Q ss_pred -------H-------------HHHh--------hcccCcEEEEEeccCChH-----HHhhhcCCCCeeecCCcccceeEE
Q 009842 141 -------K-------------RLVN--------LRASKLKILITSATLDGE-----KVSKFFSNCPTLNVPGKLYPVEIL 187 (524)
Q Consensus 141 -------~-------------~i~~--------~~~~~~~ii~~SATl~~~-----~~~~~~~~~~~~~i~~~~~~v~~~ 187 (524)
+ ...+ .+.....+|++|||..+. .|...++-.+--... -...+...
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~-~LRNIvD~ 317 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGE-GLRNIVDI 317 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccch-hhhheeee
Confidence 0 1100 011246899999999542 355665421111000 11122222
Q ss_pred ecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCc---HHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhc
Q 009842 188 HSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG---QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVR 264 (524)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~---~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 264 (524)
|... +... .+..+...- +...|||++. ++.++++++.|++. ++.+..+|++ .++
T Consensus 318 y~~~---~~~e----~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~----------Gi~a~~~~a~-----~~~ 374 (1187)
T COG1110 318 YVES---ESLE----KVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH----------GINAELIHAE-----KEE 374 (1187)
T ss_pred eccC---ccHH----HHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc----------CceEEEeecc-----chh
Confidence 3222 2222 222222222 3468999999 89999999999887 8899989973 367
Q ss_pred ccCCCCCCceEEEEec----CccccccCCCC-eeEEEeCCcccce
Q 009842 265 VFSPPPPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQR 304 (524)
Q Consensus 265 v~~~f~~g~~~ilvaT----~i~e~gidip~-v~~VId~g~~k~~ 304 (524)
.++.|..|+++++|.. +++-+|||+|. ++|+|-+|.||.+
T Consensus 375 ~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 375 ALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred hhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 8999999999999976 58999999997 7999999999755
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.71 E-value=2.9e-16 Score=169.46 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=159.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccc-ccCccccee
Q 009842 21 PVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED-RTSERTLIK 98 (524)
Q Consensus 21 ~~~ii~~pTGsGKTt~l~~~l~~-~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~i~ 98 (524)
+..+|..+||||||..+..++.. .......+++++.|+..|..|..+.+.......+ ..++....... .......|+
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCEE
Confidence 56889999999999333323222 1223456899999999999999998865432111 11110000001 112346899
Q ss_pred ecchHHHHHHHHhC--C-CCCCC-ceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCCh----HH---Hhh
Q 009842 99 YLTDGVLLREILSN--P-DLSPY-SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG----EK---VSK 167 (524)
Q Consensus 99 ~~T~g~l~~~l~~~--~-~l~~~-~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~----~~---~~~ 167 (524)
++|...+.+.+... . ..... .+||+|||| |+....+. +.+....+ +...+++|||+-. .. +..
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~ 416 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAY 416 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCC-CCcEEEEeCCCcccccccccccccC
Confidence 99999887643221 1 11111 289999999 66655432 22223345 7889999999932 11 221
Q ss_pred hcCCCCeeec-------CCcccceeEEecCCCCc------------------------ch--------------------
Q 009842 168 FFSNCPTLNV-------PGKLYPVEILHSKERPT------------------------SY-------------------- 196 (524)
Q Consensus 168 ~~~~~~~~~i-------~~~~~~v~~~~~~~~~~------------------------~~-------------------- 196 (524)
.||+ ++... +| +.+.+.|...... +.
T Consensus 417 ~fg~-~i~~Y~~~~AI~dG--~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 493 (667)
T TIGR00348 417 VFGR-YLHRYFITDAIRDG--LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNED 493 (667)
T ss_pred CCCC-eEEEeeHHHHhhcC--CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChH
Confidence 1222 11111 12 2222222211100 00
Q ss_pred -HHHHHHHHHHHH---hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHH------------
Q 009842 197 -LESALKTAIDIH---VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPE------------ 260 (524)
Q Consensus 197 -~~~~~~~~~~~~---~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~------------ 260 (524)
+......++... ....+++.+|||.++..|...++.|.+...... +.....++++.+.+
T Consensus 494 ~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~-----~~~~vv~s~~~~~~~~~~~~~~~~~~ 568 (667)
T TIGR00348 494 RLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF-----EASAIVMTGKESDDAEIRDYNKHIRT 568 (667)
T ss_pred HHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc-----CCeeEEecCCccchhHHHHHHHHhcc
Confidence 001111111111 112258999999999999999999877643210 12233344433221
Q ss_pred ---------HHhcccCCCCC-CceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhcc
Q 009842 261 ---------MQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVG 330 (524)
Q Consensus 261 ---------~r~~v~~~f~~-g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~G 330 (524)
....+.+.|++ +..+|+|+++.+-+|+|.|.+.+++-. .|+....++|.+|
T Consensus 569 ~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld-------------------Kplk~h~LlQai~ 629 (667)
T TIGR00348 569 KFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD-------------------KPLKYHGLLQAIA 629 (667)
T ss_pred ccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe-------------------ccccccHHHHHHH
Confidence 12356677765 688999999999999999998877620 1333346789999
Q ss_pred ccCCC-CCC
Q 009842 331 RAGRT-RPG 338 (524)
Q Consensus 331 RaGR~-~~G 338 (524)
|+-|. .+|
T Consensus 630 R~nR~~~~~ 638 (667)
T TIGR00348 630 RTNRIDGKD 638 (667)
T ss_pred HhccccCCC
Confidence 99995 444
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.71 E-value=3e-17 Score=147.65 Aligned_cols=156 Identities=22% Similarity=0.198 Sum_probs=106.0
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEee
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR 86 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~-~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~ 86 (524)
++|.++++.+.+++++++.||||+|||+.....+.... ......++++.|++.++.++.+++.+.++..........-.
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccc
Confidence 57899999999999999999999999955554443322 22345999999999999999999977766421122211100
Q ss_pred cc------cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc--cCcEEEEEe
Q 009842 87 FE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--SKLKILITS 157 (524)
Q Consensus 87 ~~------~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~--~~~~ii~~S 157 (524)
.. .....+.+|+++||+.+.+.+.... .+.++++||+||+|+...+ .+ ...+..+..... .+.++++||
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~-~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TF-RAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-TH-HHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cH-HHHHHHHHHHhcCCCCCcEEEEe
Confidence 10 0112358999999999999887632 5666999999999963332 22 123344443331 268999999
Q ss_pred ccCChHHHh
Q 009842 158 ATLDGEKVS 166 (524)
Q Consensus 158 ATl~~~~~~ 166 (524)
||++ ..+.
T Consensus 160 AT~~-~~~~ 167 (169)
T PF00270_consen 160 ATLP-SNVE 167 (169)
T ss_dssp SSST-HHHH
T ss_pred eCCC-hhHh
Confidence 9998 5443
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.9e-16 Score=166.28 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEE
Q 009842 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (524)
Q Consensus 199 ~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilv 278 (524)
+.++.+...+ ..+.++||||+|.+.++.++..|... ++....+|+..+..++..+.+.|++|. |+|
T Consensus 437 Aii~ei~~~~--~~GrpVLV~t~sv~~se~ls~~L~~~----------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtI 502 (908)
T PRK13107 437 AIIKDIKDCR--ERGQPVLVGTVSIEQSELLARLMVKE----------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTI 502 (908)
T ss_pred HHHHHHHHHH--HcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeEeccCcccHHHHHHHHhCCCCCc--EEE
Confidence 4445555554 34669999999999999999999886 777888999999999999999999998 999
Q ss_pred ecCccccccCCC
Q 009842 279 STNIAETSLTVD 290 (524)
Q Consensus 279 aT~i~e~gidip 290 (524)
|||+|++|.||-
T Consensus 503 ATnmAGRGTDIk 514 (908)
T PRK13107 503 ATNMAGRGTDIV 514 (908)
T ss_pred ecCCcCCCccee
Confidence 999999999985
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.70 E-value=2.4e-15 Score=156.36 Aligned_cols=292 Identities=16% Similarity=0.188 Sum_probs=172.1
Q ss_pred hHHHHHHH----HHhccCC-EEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 7 LQYEETIV----ETVEQNP-VVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 7 ~~~~~~i~----~~l~~~~-~~ii~~pTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
..||...+ +++.+|+ -++++..||+|||..+.+++... ....-++|+++.-|+++..|-+..+...+.......
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n 246 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMN 246 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcccee
Confidence 44555444 4444443 47888899999993333444433 333456999999999999998877655543221111
Q ss_pred EeEEeecccccCcccceeecchHHHHHHHHhC-C-----CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSN-P-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~-~-----~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
.-.+......++|.++|...+....... . ....+++||||||| |+.....- .++.... .-.+
T Consensus 247 ----~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-----~I~dYFd--A~~~ 314 (875)
T COG4096 247 ----KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-----SILDYFD--AATQ 314 (875)
T ss_pred ----eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-----HHHHHHH--HHHH
Confidence 1112222335799999999888777443 1 34458999999999 77655432 3333332 2234
Q ss_pred EEeccCChH---HHhhhcCCCCee------------ecCCcccceeEEecCC--------------------CCcc----
Q 009842 155 ITSATLDGE---KVSKFFSNCPTL------------NVPGKLYPVEILHSKE--------------------RPTS---- 195 (524)
Q Consensus 155 ~~SATl~~~---~~~~~~~~~~~~------------~i~~~~~~v~~~~~~~--------------------~~~~---- 195 (524)
+++||+... .--.||++.|+. .++.+...+.+.+... ....
T Consensus 315 gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~ 394 (875)
T COG4096 315 GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEAR 394 (875)
T ss_pred hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccccc
Confidence 449998542 123566443332 1121111111111100 0000
Q ss_pred ---------hHHHHH-HHHHHHHhc----CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHH
Q 009842 196 ---------YLESAL-KTAIDIHVR----EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEM 261 (524)
Q Consensus 196 ---------~~~~~~-~~~~~~~~~----~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~ 261 (524)
...+.+ ..+.+.... ...+++||||.+..+|+.+...|.....+.. +--+..+.+.-...+
T Consensus 395 d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~-----~~~a~~IT~d~~~~q 469 (875)
T COG4096 395 DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN-----GRYAMKITGDAEQAQ 469 (875)
T ss_pred ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc-----CceEEEEeccchhhH
Confidence 011122 222222222 1246899999999999999999998865532 233445555544433
Q ss_pred HhcccCCC--CCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC
Q 009842 262 QVRVFSPP--PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 262 r~~v~~~f--~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 335 (524)
+ .+ +.| ++.-.+|.++.+++.+|||+|.|..+|-.-. --|+.-|+|+.||+-|.
T Consensus 470 ~-~I-d~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl 525 (875)
T COG4096 470 A-LI-DNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRL 525 (875)
T ss_pred H-HH-HHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCcccc
Confidence 2 22 222 3445689999999999999999888874222 23889999999999997
No 118
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.69 E-value=5e-16 Score=144.21 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=107.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC---CCCcEEEEcccchhHHHHHHHHHHHHhC---Cccc
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQELG---VRLG 78 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~-l~~~l~~~~~---~~~~~i~~~~P~r~la~~~~~~~~~~~~---~~~~ 78 (524)
.+.+|.+.+..+.+|+++++++|||+|||.. +..++..... ..+.+++++.|++.++.|+++.+.+... ..+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~ 101 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEE
Confidence 5789999999999999999999999999933 3333333322 2456889999999999999887765433 2222
Q ss_pred ceEeEEeecc--cccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 79 EEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 79 ~~vg~~~~~~--~~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
...|.....+ .....+.+|+++|++.+.+.+.... .+.+++++|+||+|+ ..+.++. ..+..+....+.+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~~~-~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMGFE-DQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccChH-HHHHHHHHhCCcccEEEE
Confidence 2222110000 0112367899999999988886554 688999999999995 2233332 234444545555899999
Q ss_pred EeccCChH
Q 009842 156 TSATLDGE 163 (524)
Q Consensus 156 ~SATl~~~ 163 (524)
+|||++..
T Consensus 180 ~SAT~~~~ 187 (203)
T cd00268 180 FSATMPKE 187 (203)
T ss_pred EeccCCHH
Confidence 99999753
No 119
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.68 E-value=1.1e-16 Score=128.21 Aligned_cols=89 Identities=45% Similarity=0.753 Sum_probs=78.5
Q ss_pred HHHHHHHcccccCCCCCCHHhHhhccCCCChHHHHHHHHHhhh-CCHHHHHHHHHHhccCCcccCCCCchhHHHhhccCC
Q 009842 400 ALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEF-GCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPL 478 (524)
Q Consensus 400 al~~L~~~g~l~~~~~lT~lG~~~~~lpl~p~~~~~l~~~~~~-~c~~~~l~i~a~~~~~~~f~~~~~~~~~~~~~~~~~ 478 (524)
|++.|+.+||||++|+||++|+.|+.||++|++||+|+.+..+ +|.+++++|+|++++.++|..+ ....+....+..|
T Consensus 2 A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~~ 80 (92)
T smart00847 2 ALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRRF 80 (92)
T ss_pred HHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999999 8999999999999999888766 4445555667777
Q ss_pred CCCCCCC-CCCHHHHH
Q 009842 479 ELPDGSG-WGDHIQLL 493 (524)
Q Consensus 479 ~~~~~~~-~~D~~~~~ 493 (524)
. +. .|||++++
T Consensus 81 ~----~~~~~D~~~~l 92 (92)
T smart00847 81 A----SGRESDHLTLL 92 (92)
T ss_pred c----CCCCCChhhhC
Confidence 7 55 79999863
No 120
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=5.8e-15 Score=157.66 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=83.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHH---hCCcccceE
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGEEV 81 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKT-t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~---~~~~~~~~v 81 (524)
+.+++.+++..+..++.++..++||+||| +++.+++..... +..+.++.|++.+|.|.++.+... +|..++..+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 78899999999999999999999999999 333333333222 223667789999999998876543 445554444
Q ss_pred eEEeecccccCcccceeecchHHH-HHHHHhCC-CC-------CCCceEEEeCCCc
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSNP-DL-------SPYSVIILDEAHE 128 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l-~~~l~~~~-~l-------~~~~~iIiDE~H~ 128 (524)
|..........-.++|+|+|||.+ ...+.... .+ +.+.++||||||.
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 421111111122589999999999 88876553 23 3568999999985
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.64 E-value=2.5e-14 Score=141.53 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=120.5
Q ss_pred CcEEEEEeccCChHHHhhhcCC--CCeeecCCcccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Q 009842 150 KLKILITSATLDGEKVSKFFSN--CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (524)
Q Consensus 150 ~~~ii~~SATl~~~~~~~~~~~--~~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~ 227 (524)
..|+|.+|||+....+..--++ ..++.-.|-..|.-.. .+...-+++.+..+.... ..+..+||-+-|++.++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~iev---Rp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIEV---RPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCceee---ecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHH
Confidence 5689999999976555443221 1122222322232111 122233444444444333 33469999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeec
Q 009842 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (524)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~ 307 (524)
.+.+.|.+. ++.+.++||++..-+|.+++...+.|..+|||.-|.+-.|+|+|.|..|.-.+--|
T Consensus 461 dLT~Yl~e~----------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADK----- 525 (663)
T COG0556 461 DLTEYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK----- 525 (663)
T ss_pred HHHHHHHhc----------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCc-----
Confidence 999999987 99999999999999999999999999999999999999999999999997433222
Q ss_pred CCCCccccceeeecHHhHHhhccccCCCCCCeEEEec
Q 009842 308 PSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY 344 (524)
Q Consensus 308 ~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~ 344 (524)
.|+ .-|-.+.+|-+|||.|.-.|+++...
T Consensus 526 --eGF------LRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 526 --EGF------LRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred --ccc------ccccchHHHHHHHHhhccCCeEEEEc
Confidence 122 22556888999999999999988654
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.63 E-value=1.9e-15 Score=162.55 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=99.7
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC
Q 009842 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip 290 (524)
..+.+++|||++++.++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~----------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhc----------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 34568999999999999999999876 78899999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCc
Q 009842 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPS 346 (524)
Q Consensus 291 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~ 346 (524)
++++||.++... .-.|.+..+|+||+||+||...|.|+.+++.
T Consensus 514 ~v~lVii~d~ei-------------fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 514 EVSLVAILDADK-------------EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred CCcEEEEeCCcc-------------cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999865422 0123477889999999999999999998874
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=1.5e-15 Score=150.26 Aligned_cols=313 Identities=11% Similarity=0.029 Sum_probs=193.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHH-hcCCCCCcEEEEcccchhHHHHHHHHH------HHHhCCccc
Q 009842 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRV------AQELGVRLG 78 (524)
Q Consensus 6 i~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~-~~~~~~~~~i~~~~P~r~la~~~~~~~------~~~~~~~~~ 78 (524)
-+++|.+++..+.+|+++++.-.|.|||++.-..... ..........++..|+.+++....+.. -.++...+.
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 4678889999999999999999999999942211111 111122345666777777765543321 011111111
Q ss_pred ceE-eEEeeccc-ccCcccceeecchHHHHHHHHhCC-----CCCCCceEEEeCCCcCCCChHH-HHHHHHHHHhhcc--
Q 009842 79 EEV-GYAIRFED-RTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTDI-LLGLVKRLVNLRA-- 148 (524)
Q Consensus 79 ~~v-g~~~~~~~-~~~~~~~i~~~T~g~l~~~l~~~~-----~l~~~~~iIiDE~H~~~~~~~~-~~~~l~~i~~~~~-- 148 (524)
+.. |.....+. ....+.+++|..+.+.....+.+. .+-...++++||+|....-... ....++++++...
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 000 00000000 012356788888877766554332 3444567899999953333322 2223444443322
Q ss_pred ---cCcEEEEEeccC-Ch-HHHhhhcCC--CCeeecCCccccee--EEecCCCC-------cchHHHHHHHHHHHHhcCC
Q 009842 149 ---SKLKILITSATL-DG-EKVSKFFSN--CPTLNVPGKLYPVE--ILHSKERP-------TSYLESALKTAIDIHVREP 212 (524)
Q Consensus 149 ---~~~~ii~~SATl-~~-~~~~~~~~~--~~~~~i~~~~~~v~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 212 (524)
.+++++-.|||+ ++ ....+.++- ...+.++|.+..-+ +.|.+... .+++........+.. ..
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~~ 524 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--QH 524 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--Hc
Confidence 378999999999 33 334555543 34566677654433 23333211 122332222333332 33
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCe
Q 009842 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV 292 (524)
Q Consensus 213 ~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v 292 (524)
+-++|.||++++-|+-+....++.+.+.... .--.+..+.||-..++|++++...-.|+.+-|+|||.+|-||||.+.
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~--LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPH--LVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 5589999999999988776666554332211 11235568899999999999999889999999999999999999999
Q ss_pred eEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeE
Q 009842 293 VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKC 340 (524)
Q Consensus 293 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~ 340 (524)
+.|+.+|+|. |.++++|.+|||||. .+...
T Consensus 603 DAVl~~GFP~------------------S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 603 DAVLHLGFPG------------------SIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred eeEEEccCch------------------hHHHHHHHhccccccCCCceE
Confidence 9999999855 899999999999998 55543
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.61 E-value=1.8e-13 Score=152.43 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=109.6
Q ss_pred cEEEEEeccCCh----HHHhhhcCCCC--eeecCCcccc----eeEEecCC-------CCcchHHHHHHHHHHHHhcCCC
Q 009842 151 LKILITSATLDG----EKVSKFFSNCP--TLNVPGKLYP----VEILHSKE-------RPTSYLESALKTAIDIHVREPE 213 (524)
Q Consensus 151 ~~ii~~SATl~~----~~~~~~~~~~~--~~~i~~~~~~----v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 213 (524)
..+|++|||+.. +-+.+.+|-.. ...+...+++ ..++.... ...+|.......+..+.. ..+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 468999999953 34555555321 1122122222 11211111 123455455555555543 345
Q ss_pred CCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCe-
Q 009842 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV- 292 (524)
Q Consensus 214 g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v- 292 (524)
|++|||++|.+..+.+++.|...... .++.+ +..+.. ..|.++++.|++|...|+++|+.+.+|||+|+.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~------~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~ 745 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF------EGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNG 745 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc------cCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCc
Confidence 89999999999999999998763110 13333 223333 467888999999999999999999999999985
Q ss_pred -eEEEeCCcccceeecC----------CCCccccc--eeeecHHhHHhhccccCCCC--CCeEEEe
Q 009842 293 -VYVIDCGYVKQRQYNP----------SSGMYSLD--VVQISKVQANQRVGRAGRTR--PGKCYRL 343 (524)
Q Consensus 293 -~~VId~g~~k~~~~~~----------~~~~~~l~--~~~~s~~~~~QR~GRaGR~~--~G~~~~l 343 (524)
..||-.++|-..--|| ..|-..+. ..|-....+.|-+||.=|.. .|..+.+
T Consensus 746 l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 746 LVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred eEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 4667788885432111 01111111 11334456789999999984 4655544
No 125
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.58 E-value=1.8e-13 Score=150.91 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=88.7
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC---ceEEEEecCccccccC
Q 009842 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETSLT 288 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g---~~~ilvaT~i~e~gid 288 (524)
.+.++|||+.-......+.+.|... ++....+||+++.++|..+++.|.+. ..-+|++|.+++.|||
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~----------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR----------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc----------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 4569999998777777666666543 67788899999999999999999642 3467899999999999
Q ss_pred CCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCC---CCeEEEecCchhhhh
Q 009842 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (524)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~~~~ 351 (524)
+...++||.++. |.+.....|+.||+-|.+ +=.+|+|+++...+.
T Consensus 556 Lt~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 556 LATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred hhhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999998654 335556779999888873 347889998877654
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.57 E-value=1.4e-14 Score=124.10 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=92.3
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCC
Q 009842 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (524)
Q Consensus 212 ~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~ 291 (524)
.++++|||+++...++.+++.|.+. +..+..+||+++..+|..+++.|.+|..+|+++|+++++|+|+|+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP----------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc----------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhh
Confidence 5789999999999999999999873 667889999999999999999999999999999999999999999
Q ss_pred eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEE
Q 009842 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYR 342 (524)
Q Consensus 292 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 342 (524)
++.||..+. +.+...+.|++||+||. +.|.|+.
T Consensus 97 ~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 97 VSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CCEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 999997554 45778999999999999 4787765
No 127
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.56 E-value=5.4e-13 Score=143.83 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=72.1
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCC--------------------------
Q 009842 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-------------------------- 269 (524)
Q Consensus 216 iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f-------------------------- 269 (524)
.||=+++.+.+..+++.|........ ..+.+..+||..+...|..+++..
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~----~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~ 834 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEK----YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSP 834 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccC----CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccc
Confidence 37778889999999998877643221 356788899999877776554321
Q ss_pred CCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCC
Q 009842 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP 337 (524)
Q Consensus 270 ~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 337 (524)
..+...|+|||++.|.|+|++ .+++| +.+.+..+.+||+||..|.+.
T Consensus 835 ~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 835 ALNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ccCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhccccccc
Confidence 125779999999999999997 55544 235688899999999999743
No 128
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=2.8e-13 Score=145.20 Aligned_cols=319 Identities=17% Similarity=0.165 Sum_probs=211.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe---EEeecccccCcc
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG---YAIRFEDRTSER 94 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg---~~~~~~~~~~~~ 94 (524)
+.++++++.+|+|||||..+..++.. +...++++++.|....+..+++.+...++.-.|..+- .....+.+....
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~ 1234 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQK 1234 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhh
Confidence 36789999999999999888777665 4456789999999998888888776665544444332 122233344567
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH----HHHHHHHHHhhcccCcEEEEEeccC-ChHHHhhhc
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI----LLGLVKRLVNLRASKLKILITSATL-DGEKVSKFF 169 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~----~~~~l~~i~~~~~~~~~ii~~SATl-~~~~~~~~~ 169 (524)
.+++++||+..... + ..+++++.|.||.|+.+--.+. +.. .+.+.....++++++.+|-.+ +..++ -++
T Consensus 1235 ~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~-ig~ 1308 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL-IGA 1308 (1674)
T ss_pred cceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh-ccc
Confidence 89999999987554 2 7789999999999964411111 122 444444445589999999888 54555 333
Q ss_pred CCCCeeecC--CcccceeEEecCCCCcchHHHHH---HHHHHHH--hcCCCCCEEEecCcHHHHHHHHHHHHHHhhh---
Q 009842 170 SNCPTLNVP--GKLYPVEILHSKERPTSYLESAL---KTAIDIH--VREPEGDVLIFMTGQDDIEKLVSKLEDKIRS--- 239 (524)
Q Consensus 170 ~~~~~~~i~--~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~--- 239 (524)
....+++.. .|..|.+++........|..... +....-. ....+.+.+||+|+++.+..++.-+-.....
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 445555544 46677777665544443332211 1111110 1235678999999999999988776543211
Q ss_pred -------------cCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceee
Q 009842 240 -------------LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (524)
Q Consensus 240 -------------~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~ 306 (524)
+... ....|. |-+|+..++..+-..|..|.+.|.|...- ..|+-.-.--+|| .| ...|
T Consensus 1389 ~~l~~~~e~~~~~l~e~--l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg---t~~y 1459 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRES--LKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG---TQYY 1459 (1674)
T ss_pred HHHHHHHhcchHhhhhc--cccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec---ceee
Confidence 1111 233343 99999999999999999999999887766 7888776444444 23 5567
Q ss_pred cCCCCccccceeeecHHhHHhhccccCCCCCCeEEEec--CchhhhhhCcCCCCC
Q 009842 307 NPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY--PSTVYHDEFLDVTVP 359 (524)
Q Consensus 307 ~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~--~~~~~~~~~~~~~~p 359 (524)
|.....+ ...+.+...|+.|+|.| .|+|+.+. +++.|...+...+.|
T Consensus 1460 dg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1460 DGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ccccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 7655322 24578889999999998 68888776 555565546666665
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.53 E-value=5.8e-15 Score=114.35 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=66.8
Q ss_pred CeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHH
Q 009842 247 DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (524)
Q Consensus 247 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 326 (524)
++.+..+||+++.++|..+++.|.+|..+||+||+++++|||+|++++||.++. +.|..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999775 34888999
Q ss_pred hhccccCCC
Q 009842 327 QRVGRAGRT 335 (524)
Q Consensus 327 QR~GRaGR~ 335 (524)
|++||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999995
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.50 E-value=2e-13 Score=133.74 Aligned_cols=301 Identities=17% Similarity=0.176 Sum_probs=182.7
Q ss_pred CchHHHHHHHHHhccC---CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 5 PILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~---~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
-+.+||+.-+..+-.| +.-+|+-|-|+|||..-...+. +-.+.++|+.-..+.+.|+...+............
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~----tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC----TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee----eecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 3678999999888754 3457778999999922111111 11346677777778888888888766666555555
Q ss_pred eEEeecccccCcccceeecchHHHHHHH---------HhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009842 82 GYAIRFEDRTSERTLIKYLTDGVLLREI---------LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 82 g~~~~~~~~~~~~~~i~~~T~g~l~~~l---------~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (524)
-+.....+....++.|++.|..++...- +.--.-+..+++++||+| .+....+..++..+....+
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHcK---- 451 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHCK---- 451 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHhh----
Confidence 4444444444567889998887764211 110124578999999999 4555556665666555444
Q ss_pred EEEEeccCCh--HHHh--hhcCCCCeeecC-----CcccceeE----EecCCCC---cchH-----------------HH
Q 009842 153 ILITSATLDG--EKVS--KFFSNCPTLNVP-----GKLYPVEI----LHSKERP---TSYL-----------------ES 199 (524)
Q Consensus 153 ii~~SATl~~--~~~~--~~~~~~~~~~i~-----~~~~~v~~----~~~~~~~---~~~~-----------------~~ 199 (524)
++++||+-. +++. +|+-+++..... ..-+-.++ .|.+... .+|+ -.
T Consensus 452 -LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFr 530 (776)
T KOG1123|consen 452 -LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFR 530 (776)
T ss_pred -ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhH
Confidence 789999832 2232 222222222110 01011111 1111111 0111 13
Q ss_pred HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC-ceEEEE
Q 009842 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRFIV 278 (524)
Q Consensus 200 ~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~ilv 278 (524)
+.+.+++.|.. .+.+||||....--..+.|-.|.+- +++|..++.+|.+|++.|+-+ .++.|+
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp---------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP---------------FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc---------------eEECCCchhHHHHHHHhcccCCccceEE
Confidence 34455555544 5568999987765444444333221 289999999999999999854 688899
Q ss_pred ecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCC-------CeEEEecCchhh
Q 009842 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-------GKCYRLYPSTVY 349 (524)
Q Consensus 279 aT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~-------G~~~~l~~~~~~ 349 (524)
-.-+..++||+|..++.|+-. +..| |+.+=.||.||.-|.+. ...|.|.+++..
T Consensus 595 lSKVgDtSiDLPEAnvLIQIS--------SH~G---------SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQIS--------SHGG---------SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EeeccCccccCCcccEEEEEc--------cccc---------chHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 999999999999999999621 1111 55566799999888732 245555555544
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.9e-13 Score=146.56 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=113.8
Q ss_pred EEEEEeccCCh--HHHhhhcCCCCeeecCCcccceeEEecCCC----CcchHHHHHHHHHHHHhcCCCCCEEEecCcHHH
Q 009842 152 KILITSATLDG--EKVSKFFSNCPTLNVPGKLYPVEILHSKER----PTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (524)
Q Consensus 152 ~ii~~SATl~~--~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~ 225 (524)
++-+||.|... ..|.+.+ +-.++.+|... |+.-.-.+.. ..+.....+..+...+ ..+.++||||+|++.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHH
Confidence 56777777732 3354444 35566666533 2211111111 1112223333333332 346799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC---CeeEE-----Ee
Q 009842 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD---GVVYV-----ID 297 (524)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip---~v~~V-----Id 297 (524)
++.+++.|... ++....+|+ .+.+|+..+..|..+...|+||||+|++|+||+ +|..| |+
T Consensus 611 sE~Ls~~L~~~----------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg 678 (1025)
T PRK12900 611 SETLSRMLRAK----------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG 678 (1025)
T ss_pred HHHHHHHHHHc----------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC
Confidence 99999999886 677778997 577888889999999999999999999999999 55433 55
Q ss_pred CCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCchhh
Q 009842 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (524)
Q Consensus 298 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 349 (524)
+.. +.|...+.||.||+||. .||.+..+++.++.
T Consensus 679 ter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 679 SER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 443 34677889999999999 79999998887665
No 132
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.49 E-value=1.4e-13 Score=115.33 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=87.6
Q ss_pred ccCCEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecc-cccCccc
Q 009842 18 EQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DRTSERT 95 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt-~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~ 95 (524)
.+|+..+|-..+|+|||+ .+|.++.+.. ..+.+++++.|+|+.+.++.+.+. +. .+.+....- .....+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~~~~rvLvL~PTRvva~em~~aL~---~~----~~~~~t~~~~~~~~g~~ 73 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAI-KRRLRVLVLAPTRVVAEEMYEALK---GL----PVRFHTNARMRTHFGSS 73 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHH-HTT--EEEEESSHHHHHHHHHHTT---TS----SEEEESTTSS----SSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHH-HccCeEEEecccHHHHHHHHHHHh---cC----CcccCceeeeccccCCC
Confidence 468889999999999996 5666665443 357799999999999998887763 11 233332221 1234567
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChH
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~ 163 (524)
.|.++|.+.+.+.+.....+.++++||+||+|..+..+-...+.++..... ...++|+||||+|..
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGS 139 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCC
Confidence 788999999888887766889999999999995333333345555555332 257899999999753
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=4.7e-13 Score=115.78 Aligned_cols=136 Identities=33% Similarity=0.311 Sum_probs=91.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccccc------Cc
Q 009842 21 PVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT------SE 93 (524)
Q Consensus 21 ~~~ii~~pTGsGKTt~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~------~~ 93 (524)
+++++.||||+|||+.+...+..... ....+++++.|++.++.+..+.+...... ...+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 35789999999999766666655433 24568899999999999999888776642 23333333222222 35
Q ss_pred ccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 94 RTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
...++++|++.+.+.+.... ....++++|+||+|. ................ .....+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~-~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLK-LPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhh-CCccceEEEEeccC
Confidence 78899999998888775443 566799999999994 2222221111122222 23478999999996
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.47 E-value=9.9e-13 Score=120.93 Aligned_cols=156 Identities=24% Similarity=0.186 Sum_probs=106.2
Q ss_pred CCchHHHHHHHHHhccC-CEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceE
Q 009842 4 LPILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~-~~~ii~~pTGsGKTt~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~v 81 (524)
.+..++|.++++.+... +.+++.||||+|||+.+..++..... .....++++.|++.++.++.+++.+..........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 45688999999999888 99999999999999755545444332 22467899999999999999888766643221111
Q ss_pred eEEeeccc------ccCcccceeecchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 82 GYAIRFED------RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 82 g~~~~~~~------~~~~~~~i~~~T~g~l~~~l~~~~-~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
........ ......+++++|++.+.+.+.... ...+++++|+||+|..... . ....+..++...+...+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~-~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-G-FGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-C-cHHHHHHHHHhCCccceEE
Confidence 11111110 111223899999999998886654 6778899999999953321 1 1222344444444478999
Q ss_pred EEeccCC
Q 009842 155 ITSATLD 161 (524)
Q Consensus 155 ~~SATl~ 161 (524)
++|||++
T Consensus 165 ~~saT~~ 171 (201)
T smart00487 165 LLSATPP 171 (201)
T ss_pred EEecCCc
Confidence 9999995
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.46 E-value=2.7e-11 Score=133.38 Aligned_cols=134 Identities=9% Similarity=0.094 Sum_probs=87.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecC-CCCHHHHhcccCCCCCC
Q 009842 194 TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG-SLPPEMQVRVFSPPPPN 272 (524)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~v~~~f~~g 272 (524)
.+|.......+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++.+.|+++
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~----------~~~~-l~Qg~~~~---~~~l~~~F~~~ 693 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW----------QVSH-LAQEKNGT---AYNIKKRFDRG 693 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc----------CCcE-EEeCCCcc---HHHHHHHHHcC
Confidence 345555666555544 45789999999999999999988643 1223 2223 222 34567788888
Q ss_pred ceEEEEecCccccccCCC--CeeEEEeCCcccceeecC----------CCCccccce--eeecHHhHHhhccccCCCC--
Q 009842 273 CRRFIVSTNIAETSLTVD--GVVYVIDCGYVKQRQYNP----------SSGMYSLDV--VQISKVQANQRVGRAGRTR-- 336 (524)
Q Consensus 273 ~~~ilvaT~i~e~gidip--~v~~VId~g~~k~~~~~~----------~~~~~~l~~--~~~s~~~~~QR~GRaGR~~-- 336 (524)
...|+++|+.+..|||+| +...||-.++|-..-.|| ..|-..+.. .|.....+.|=+||.=|..
T Consensus 694 ~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D 773 (820)
T PRK07246 694 EQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQ 773 (820)
T ss_pred CCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCC
Confidence 889999999999999997 355666678774432221 112111222 2333456889999999984
Q ss_pred CCeEEEe
Q 009842 337 PGKCYRL 343 (524)
Q Consensus 337 ~G~~~~l 343 (524)
.|.++.+
T Consensus 774 ~Gvv~il 780 (820)
T PRK07246 774 KSAVLIL 780 (820)
T ss_pred cEEEEEE
Confidence 5766544
No 136
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=7.4e-12 Score=130.95 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEE
Q 009842 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (524)
Q Consensus 198 ~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~il 277 (524)
...++.+...+ ..+.||||.+.+.+..+.++..|.+. ++....+++.-...+-..|-+.=+. -.|.
T Consensus 414 ~Aii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~----------gI~h~vLNAk~~~~EA~IIa~AG~~--gaVT 479 (764)
T PRK12326 414 DAIVEHIAEVH--ETGQPVLVGTHDVAESEELAERLRAA----------GVPAVVLNAKNDAEEARIIAEAGKY--GAVT 479 (764)
T ss_pred HHHHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHHHhC----------CCcceeeccCchHhHHHHHHhcCCC--CcEE
Confidence 34444555554 35669999999999999999999876 5556667776443333333333232 3699
Q ss_pred EecCccccccCCC---------------CeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEE
Q 009842 278 VSTNIAETSLTVD---------------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCY 341 (524)
Q Consensus 278 vaT~i~e~gidip---------------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 341 (524)
||||+|++|.||- +=-+||-+..+ .|.--=.|-.|||||. .||.+-
T Consensus 480 IATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerh------------------eSrRID~QLrGRaGRQGDpGss~ 541 (764)
T PRK12326 480 VSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRH------------------RSERLDNQLRGRAGRQGDPGSSV 541 (764)
T ss_pred EEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCC------------------chHHHHHHHhcccccCCCCCcee
Confidence 9999999999985 11245544333 3444445999999999 688766
Q ss_pred EecCchh
Q 009842 342 RLYPSTV 348 (524)
Q Consensus 342 ~l~~~~~ 348 (524)
.+.|-++
T Consensus 542 f~lSleD 548 (764)
T PRK12326 542 FFVSLED 548 (764)
T ss_pred EEEEcch
Confidence 5554443
No 137
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.37 E-value=4.2e-12 Score=115.60 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=91.7
Q ss_pred CCchHHHHHHHHHhcc-------CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCc
Q 009842 4 LPILQYEETIVETVEQ-------NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR 76 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~-------~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~ 76 (524)
+.++.+|+++++.+.+ +..+++.+|||||||..+..++..... .++++.|+..+..|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 4678999999988873 689999999999999555444443332 78888899999999988884333221
Q ss_pred ccceE--------eE--------EeecccccCcccceeecchHHHHHHHHhCC------------CCCCCceEEEeCCCc
Q 009842 77 LGEEV--------GY--------AIRFEDRTSERTLIKYLTDGVLLREILSNP------------DLSPYSVIILDEAHE 128 (524)
Q Consensus 77 ~~~~v--------g~--------~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~------------~l~~~~~iIiDE~H~ 128 (524)
..... +. ............++.+.|...+........ .....++||+||+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 11100 00 000011122457788999988887764311 345678999999994
Q ss_pred CCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 129 RSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 129 ~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
...... .+.++. . ....+|+||||+.
T Consensus 158 -~~~~~~----~~~i~~-~-~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 -YPSDSS----YREIIE-F-KAAFILGLTATPF 183 (184)
T ss_dssp -THHHHH----HHHHHH-S-SCCEEEEEESS-S
T ss_pred -cCCHHH----HHHHHc-C-CCCeEEEEEeCcc
Confidence 333322 233333 3 3788999999975
No 138
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.35 E-value=9.1e-13 Score=102.79 Aligned_cols=71 Identities=31% Similarity=0.406 Sum_probs=65.7
Q ss_pred CeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHH
Q 009842 247 DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (524)
Q Consensus 247 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 326 (524)
++.+..+||++++++|..+++.|.+|..+|+++|+++++|+|+|+++.||.++. +.+..++.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 678899999999999999999999999999999999999999999999998664 45888999
Q ss_pred hhccccCCC
Q 009842 327 QRVGRAGRT 335 (524)
Q Consensus 327 QR~GRaGR~ 335 (524)
|++||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=3e-11 Score=129.53 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=63.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeec----ccccCccccee
Q 009842 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF----EDRTSERTLIK 98 (524)
Q Consensus 23 ~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~----~~~~~~~~~i~ 98 (524)
-+....||+|||..+...++.... .|..+.++.|+..||.+-++.+...+.. .|..+|..... +.+..-.++|+
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~-lGl~v~~i~~~~~~~err~~Y~~dI~ 175 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEF-LGLSVGIVTPFQPPEEKRAAYAADIT 175 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcc-cCCEEEEECCCCCHHHHHHHhcCCEE
Confidence 356679999999333222222222 3556777789999999999988765532 33444432211 11112348999
Q ss_pred ecchHHH-----HHHHH---hCCCCCCCceEEEeCCCc
Q 009842 99 YLTDGVL-----LREIL---SNPDLSPYSVIILDEAHE 128 (524)
Q Consensus 99 ~~T~g~l-----~~~l~---~~~~l~~~~~iIiDE~H~ 128 (524)
|+|...+ ...+. .....+++.++||||+|.
T Consensus 176 YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 176 YGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 9999875 22221 111357889999999985
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=2.2e-10 Score=121.76 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEE
Q 009842 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (524)
Q Consensus 199 ~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilv 278 (524)
+.+..+...+ ..+.|+||.+.|.+..+.++..|.+. ++..-.+++.-...+-..|-+.=+ .-.|.|
T Consensus 414 Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTI 479 (925)
T PRK12903 414 AVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEA----------NIPHTVLNAKQNAREAEIIAKAGQ--KGAITI 479 (925)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCceeecccchhhHHHHHHhCCC--CCeEEE
Confidence 3444444444 34679999999999999999999876 555555776533333333322222 347999
Q ss_pred ecCccccccCCCCee--------EEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009842 279 STNIAETSLTVDGVV--------YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 279 aT~i~e~gidip~v~--------~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
|||+|++|.||-=-. +||-+..+. |.--=.|-.|||||. .||.+-.+.|-+
T Consensus 480 ATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 480 ATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred ecccccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEecc
Confidence 999999999996222 677655433 222234999999999 688665444433
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.27 E-value=9.8e-11 Score=125.18 Aligned_cols=134 Identities=11% Similarity=0.000 Sum_probs=82.2
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC-CcccceEeEEe---e---cccccCcccc
Q 009842 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAI---R---FEDRTSERTL 96 (524)
Q Consensus 24 ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~-~~~~~~vg~~~---~---~~~~~~~~~~ 96 (524)
+..+.+|||||.....++..... .|+.++++.|...++.|+.+++.+.++ ..+....+... + +........+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 34444699999444444433222 467899999999999999999998887 43332222100 0 1111234577
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH-----HHHHHHHHHhhcccCcEEEEEeccCChHHHh
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~-----~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~ 166 (524)
|+++|-.-+. ..+.++++|||||-|+.+...+. ... +....... .+..+|+.|||+..+.+.
T Consensus 243 IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~-~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 243 VVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQ-HGCALLIGGHARTAEAQA 309 (665)
T ss_pred EEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHH-cCCcEEEECCCCCHHHHH
Confidence 8888853221 15889999999999974433221 122 12222222 388999999999877654
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.27 E-value=2.5e-09 Score=120.17 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCce
Q 009842 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (524)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 274 (524)
.|.......+..+. ...+|++|||++|.+..+.+++.|...... .++.+.. -+++...|.++.+.|+++..
T Consensus 735 ~~~~~la~~i~~l~-~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~------~~~~ll~--Qg~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 735 EYIEEVAAYIAKIA-KATKGRMLVLFTSYEMLKKTYYNLKNEEEL------EGYVLLA--QGVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHHHHhhcccc------cCceEEe--cCCCCCCHHHHHHHHHhcCC
Confidence 45555555555543 345689999999999999999999765210 1233322 24444456778888888888
Q ss_pred EEEEecCccccccCCCC--eeEEEeCCcccceeecC----------CCCccccc--eeeecHHhHHhhccccCCCC--CC
Q 009842 275 RFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNP----------SSGMYSLD--VVQISKVQANQRVGRAGRTR--PG 338 (524)
Q Consensus 275 ~ilvaT~i~e~gidip~--v~~VId~g~~k~~~~~~----------~~~~~~l~--~~~~s~~~~~QR~GRaGR~~--~G 338 (524)
.|+++|+.+..|||+|+ .+.||-.++|-..--|| ..|-..+. ..|.....+.|-+||.=|.. .|
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 99999999999999997 58888888775321111 11111111 12334556789999999984 46
Q ss_pred eEEEe
Q 009842 339 KCYRL 343 (524)
Q Consensus 339 ~~~~l 343 (524)
.++.|
T Consensus 886 ~v~il 890 (928)
T PRK08074 886 TVFVL 890 (928)
T ss_pred EEEEe
Confidence 55543
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.24 E-value=1e-09 Score=116.11 Aligned_cols=288 Identities=17% Similarity=0.170 Sum_probs=167.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccC-cccc
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS-ERTL 96 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~-~~~~ 96 (524)
....+.+|.+|.||||||.+..++......++.+++++.-++.++.+++.++... +.. ..+-|....+.... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~--gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLS--GFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCC--cceeeeccccccccccccC
Confidence 4567889999999999988877877664455778999999999999999988543 111 12222211111111 1234
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcC--CCChH------HHHHHHHHHHhhcccCcEEEEEeccCChHH---H
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHER--SLNTD------ILLGLVKRLVNLRASKLKILITSATLDGEK---V 165 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~--~~~~~------~~~~~l~~i~~~~~~~~~ii~~SATl~~~~---~ 165 (524)
-++++-+.|.+.. ...+.++++|||||+-.. .+.+. ....++..+++ ...++|+|-||++... +
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~---~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR---NAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH---hCCeEEEecCCCCHHHHHHH
Confidence 4455556665543 346888999999997530 01111 12223344433 3568999999998643 4
Q ss_pred hhhcCCCCeeecCCcc----cce-eEEecCC-------------------------------------CCcchHHHHHHH
Q 009842 166 SKFFSNCPTLNVPGKL----YPV-EILHSKE-------------------------------------RPTSYLESALKT 203 (524)
Q Consensus 166 ~~~~~~~~~~~i~~~~----~~v-~~~~~~~-------------------------------------~~~~~~~~~~~~ 203 (524)
+..-++.++..+.+.. |.- ...+... ....|...
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~---- 274 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSE---- 274 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHH----
Confidence 4433333332222110 000 0000000 00011111
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCcc
Q 009842 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA 283 (524)
Q Consensus 204 ~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~ 283 (524)
+..-. ..+.+|-||++|...++.+++..... ...|+.++|.-+.. .+. .+ ++.+|++=|++.
T Consensus 275 L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~----------~~~Vl~l~s~~~~~---dv~-~W--~~~~VviYT~~i 336 (824)
T PF02399_consen 275 LLARL--NAGKNICVFSSTVSFAEIVARFCARF----------TKKVLVLNSTDKLE---DVE-SW--KKYDVVIYTPVI 336 (824)
T ss_pred HHHHH--hCCCcEEEEeChHHHHHHHHHHHHhc----------CCeEEEEcCCCCcc---ccc-cc--cceeEEEEeceE
Confidence 11111 33567889999999888888877765 55677777765554 332 23 378999999999
Q ss_pred ccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCch
Q 009842 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPST 347 (524)
Q Consensus 284 e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 347 (524)
..|+++....+=--+++.|...+- -+..+..|+.||+-.......|..+...
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYG------------PDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCC------------CcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 999999754332222232211111 1444678999999666777766666444
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.18 E-value=9.3e-10 Score=117.71 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCC-C-HHHHhcccCCCCCCceEE
Q 009842 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSL-P-PEMQVRVFSPPPPNCRRF 276 (524)
Q Consensus 199 ~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l-~-~~~r~~v~~~f~~g~~~i 276 (524)
..+..+...+ ..+.||||-+.|.+..+.+++.|... ++..-.+++.- . ..|-..|-++=+ .-.|
T Consensus 412 AI~~ei~~~~--~~grPVLIgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~~~~~EA~IIA~AG~--~G~V 477 (870)
T CHL00122 412 AIADECLQMH--QTGRPILIGTTTIEKSELLSQLLKEY----------RLPHQLLNAKPENVRRESEIVAQAGR--KGSI 477 (870)
T ss_pred HHHHHHHHHH--hcCCCEEEeeCCHHHHHHHHHHHHHc----------CCccceeeCCCccchhHHHHHHhcCC--CCcE
Confidence 3444444444 44669999999999999999999886 56556677752 2 333333333323 3369
Q ss_pred EEecCccccccCC
Q 009842 277 IVSTNIAETSLTV 289 (524)
Q Consensus 277 lvaT~i~e~gidi 289 (524)
.||||+|++|.||
T Consensus 478 TIATNMAGRGTDI 490 (870)
T CHL00122 478 TIATNMAGRGTDI 490 (870)
T ss_pred EEeccccCCCcCe
Confidence 9999999999998
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.17 E-value=4.6e-08 Score=103.60 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCC----
Q 009842 196 YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP---- 271 (524)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~---- 271 (524)
|.+.....+..+. ...+|.+||.++|....+.+++.|...+ .+.+ ...|..++ +...++.|+.
T Consensus 454 ~~~~~~~~~~~~~-~~~~G~~lvLfTS~~~~~~~~~~l~~~l---------~~~~-l~qg~~~~--~~~l~~~f~~~~~~ 520 (636)
T TIGR03117 454 WLENVSLSTAAIL-RKAQGGTLVLTTAFSHISAIGQLVELGI---------PAEI-VIQSEKNR--LASAEQQFLALYAN 520 (636)
T ss_pred HHHHHHHHHHHHH-HHcCCCEEEEechHHHHHHHHHHHHhhc---------CCCE-EEeCCCcc--HHHHHHHHHHhhcC
Confidence 4444455555544 3456899999999999999999997752 3333 34554432 2334455554
Q ss_pred CceEEEEecCccccccCC----------CCeeEEEeCCcccceeecCC--------CCccccceeeecHHhHHhhccccC
Q 009842 272 NCRRFIVSTNIAETSLTV----------DGVVYVIDCGYVKQRQYNPS--------SGMYSLDVVQISKVQANQRVGRAG 333 (524)
Q Consensus 272 g~~~ilvaT~i~e~gidi----------p~v~~VId~g~~k~~~~~~~--------~~~~~l~~~~~s~~~~~QR~GRaG 333 (524)
|...|+++|+.+-.|||+ +.++.||-.-+|-.. -||- .|-..+...|-....+.|-+||.=
T Consensus 521 ~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLI 599 (636)
T TIGR03117 521 GIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLV 599 (636)
T ss_pred CCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCcee
Confidence 578999999999999999 237888876666332 1221 222222233555667789999998
Q ss_pred CC--C--CCeEEEecC
Q 009842 334 RT--R--PGKCYRLYP 345 (524)
Q Consensus 334 R~--~--~G~~~~l~~ 345 (524)
|. - .|....|=+
T Consensus 600 R~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 600 RHPDMPQNRRIHMLDG 615 (636)
T ss_pred ecCCCcCceEEEEEeC
Confidence 88 3 466555533
No 146
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.15 E-value=1.2e-09 Score=112.82 Aligned_cols=303 Identities=18% Similarity=0.189 Sum_probs=176.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC--CCCcEEEEcccchhHHHHHHHHHHHHhC-CcccceEeEEe-----ecc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAI-----RFE 88 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~--~~~~~i~~~~P~r~la~~~~~~~~~~~~-~~~~~~vg~~~-----~~~ 88 (524)
...|-+.++.-.-|=|||.|...++..... .-.+..+|++|...+ ..+...+.+... ..+...+|..- ..+
T Consensus 183 ~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~ 261 (971)
T KOG0385|consen 183 YENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLNVVVYHGDKEERAALRRD 261 (971)
T ss_pred HhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcceEEEeCCHHHHHHHHHH
Confidence 345667777789999999554444443322 224567788896554 345555555442 23333333110 001
Q ss_pred cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC--C-----
Q 009842 89 DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL--D----- 161 (524)
Q Consensus 89 ~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl--~----- 161 (524)
-......+|+++|.++.++.-..- .--+.+++||||+| |.-+....+. .+++... -..-+++|.|+ |
T Consensus 262 ~~~~~~fdV~iTsYEi~i~dk~~l-k~~~W~ylvIDEaH-RiKN~~s~L~---~~lr~f~-~~nrLLlTGTPLQNNL~EL 335 (971)
T KOG0385|consen 262 IMLPGRFDVCITSYEIAIKDKSFL-KKFNWRYLVIDEAH-RIKNEKSKLS---KILREFK-TDNRLLLTGTPLQNNLHEL 335 (971)
T ss_pred hhccCCCceEeehHHHHHhhHHHH-hcCCceEEEechhh-hhcchhhHHH---HHHHHhc-ccceeEeeCCcccccHHHH
Confidence 112347899999999887652110 12357899999999 7766654433 3344443 23346678886 2
Q ss_pred --------------hHHHhhhcCCCCee-----------------------ecCCccccee--EEecCCC--CcchHH--
Q 009842 162 --------------GEKVSKFFSNCPTL-----------------------NVPGKLYPVE--ILHSKER--PTSYLE-- 198 (524)
Q Consensus 162 --------------~~~~~~~~~~~~~~-----------------------~i~~~~~~v~--~~~~~~~--~~~~~~-- 198 (524)
.+.|..||...... .+.....|-+ +.|.... ..++..
T Consensus 336 WaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~i 415 (971)
T KOG0385|consen 336 WALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAI 415 (971)
T ss_pred HHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHH
Confidence 12355666431110 0000000000 0111100 000000
Q ss_pred -----------------HHHHHHHHH----------------------------------------HhcCCCCCEEEecC
Q 009842 199 -----------------SALKTAIDI----------------------------------------HVREPEGDVLIFMT 221 (524)
Q Consensus 199 -----------------~~~~~~~~~----------------------------------------~~~~~~g~iLVF~~ 221 (524)
.....++++ .....+.+||||-
T Consensus 416 L~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFS- 494 (971)
T KOG0385|consen 416 LMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFS- 494 (971)
T ss_pred HHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeH-
Confidence 000111111 0123456889983
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC---ceEEEEecCccccccCCCCeeEEEeC
Q 009842 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETSLTVDGVVYVIDC 298 (524)
Q Consensus 222 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g---~~~ilvaT~i~e~gidip~v~~VId~ 298 (524)
..-.+-+.|.+.+.- .++...-+.|+++.++|...++.|... +.-.+++|-+.+-|||+-..++||-+
T Consensus 495 ---Qmt~mLDILeDyc~~------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIly 565 (971)
T KOG0385|consen 495 ---QMTRMLDILEDYCML------RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILY 565 (971)
T ss_pred ---HHHHHHHHHHHHHHh------cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEe
Confidence 344455555555432 378888999999999999999988754 34567899999999999999999954
Q ss_pred CcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009842 299 GYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 299 g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
+ ..|||+. -.++.+|+-|.|-.++=++|||++....+.
T Consensus 566 D----SDWNPQ~-----------DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 566 D----SDWNPQV-----------DLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred c----CCCCchh-----------hhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 2 3455543 337889999999999999999999887765
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=1.4e-08 Score=108.68 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCC-CC-HHHHhcccCCCCCCceEE
Q 009842 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS-LP-PEMQVRVFSPPPPNCRRF 276 (524)
Q Consensus 199 ~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~-l~-~~~r~~v~~~f~~g~~~i 276 (524)
..++.+...+ ..+.||||-+.|.+..+.+++.|... ++..-.+++. .. ..+-..|-+.=+ .-.|
T Consensus 427 Ai~~ei~~~~--~~GrPVLIgT~SVe~SE~ls~~L~~~----------gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaV 492 (939)
T PRK12902 427 AVANETAEMH--KQGRPVLVGTTSVEKSELLSALLQEQ----------GIPHNLLNAKPENVEREAEIVAQAGR--KGAV 492 (939)
T ss_pred HHHHHHHHHH--hCCCCEEEeeCCHHHHHHHHHHHHHc----------CCchheeeCCCcchHhHHHHHHhcCC--CCcE
Confidence 3444444444 34679999999999999999999876 5555557765 22 223233333323 2369
Q ss_pred EEecCccccccCC
Q 009842 277 IVSTNIAETSLTV 289 (524)
Q Consensus 277 lvaT~i~e~gidi 289 (524)
.||||+|++|-||
T Consensus 493 TIATNMAGRGTDI 505 (939)
T PRK12902 493 TIATNMAGRGTDI 505 (939)
T ss_pred EEeccCCCCCcCE
Confidence 9999999999887
No 148
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.88 E-value=3.5e-08 Score=107.01 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=90.8
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC---ceEEEEecCcccccc
Q 009842 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETSL 287 (524)
Q Consensus 211 ~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g---~~~ilvaT~i~e~gi 287 (524)
..+.+||||-.=..-..-++++|... ++..--+.|++..+.|+..++.|... ..-.|+||-+.+-||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r----------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLR----------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHc----------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 45579999966555555566666554 77788899999999999999988643 567899999999999
Q ss_pred CCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhhhC
Q 009842 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEF 353 (524)
Q Consensus 288 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~ 353 (524)
|+-..+.||.++ ..|||+..+ ++.-|+-|.|-...=.+|||.|+..++.++
T Consensus 767 NLatADTVIIFD----SDWNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 767 NLATADTVIIFD----SDWNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred cccccceEEEeC----CCCCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 998887777543 346776533 555677777777777899999999998743
No 149
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.88 E-value=1.8e-07 Score=97.63 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=90.5
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCce--EEEEecCccccccCCC
Q 009842 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR--RFIVSTNIAETSLTVD 290 (524)
Q Consensus 213 ~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~--~ilvaT~i~e~gidip 290 (524)
+..+|+|-.++....-+-..|... .++..+-+.|..+...|....+.|.++.. -.|++|-+.+-|+|+-
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~---------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT 616 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA---------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT 616 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc---------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc
Confidence 348999999888777776666642 48899999999999999999999997743 3567899999999998
Q ss_pred CeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009842 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 291 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
+.+-||-++ +.|||.+. .++.-|+-|-|-.+.=.+|||.+....+.
T Consensus 617 gAnRVIIfD----PdWNPStD-----------~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 617 GANRVIIFD----PDWNPSTD-----------NQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred cCceEEEEC----CCCCCccc-----------hHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 887777543 45666543 36677888888888889999998776654
No 150
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.85 E-value=1.1e-06 Score=87.12 Aligned_cols=273 Identities=16% Similarity=0.154 Sum_probs=156.5
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecc
Q 009842 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE 88 (524)
Q Consensus 9 ~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~ 88 (524)
+++-+.-++++|..+++.-+-|-|||.++..+...... ..-+++++|- .+--.+++.+...++...-..+ ..+..
T Consensus 203 QreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra--EwplliVcPA-svrftWa~al~r~lps~~pi~v--v~~~~ 277 (689)
T KOG1000|consen 203 QREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA--EWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFV--VDKSS 277 (689)
T ss_pred hhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh--cCcEEEEecH-HHhHHHHHHHHHhcccccceEE--Eeccc
Confidence 34556678889999999999999999877777665432 3356777783 3334556666565554332111 11112
Q ss_pred ccc---CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC----
Q 009842 89 DRT---SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD---- 161 (524)
Q Consensus 89 ~~~---~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~---- 161 (524)
+.. .....|.+.+.+++..+- .--.-.++.+||+||.|. .-+... .-.+.++.....-.++|++|.|+.
T Consensus 278 D~~~~~~t~~~v~ivSye~ls~l~-~~l~~~~~~vvI~DEsH~-Lk~skt--kr~Ka~~dllk~akhvILLSGTPavSRP 353 (689)
T KOG1000|consen 278 DPLPDVCTSNTVAIVSYEQLSLLH-DILKKEKYRVVIFDESHM-LKDSKT--KRTKAATDLLKVAKHVILLSGTPAVSRP 353 (689)
T ss_pred CCccccccCCeEEEEEHHHHHHHH-HHHhcccceEEEEechhh-hhccch--hhhhhhhhHHHHhhheEEecCCcccCCc
Confidence 221 234568888888775432 111334589999999994 211111 112333333333457999999983
Q ss_pred hHHHh-------hhcC----------CCCee----e------------------------------cCCcccceeEEecC
Q 009842 162 GEKVS-------KFFS----------NCPTL----N------------------------------VPGKLYPVEILHSK 190 (524)
Q Consensus 162 ~~~~~-------~~~~----------~~~~~----~------------------------------i~~~~~~v~~~~~~ 190 (524)
.+.+. .+|. +...+ . .+.+. -++.+..
T Consensus 354 ~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr--r~Vv~~~ 431 (689)
T KOG1000|consen 354 SELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR--REVVYVS 431 (689)
T ss_pred hhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc--eEEEEEc
Confidence 22111 0110 00000 0 01110 1111111
Q ss_pred CCCcc-----hHHHH---------------------------HHHHHHHH------hcCCCCCEEEecCcHHHHHHHHHH
Q 009842 191 ERPTS-----YLESA---------------------------LKTAIDIH------VREPEGDVLIFMTGQDDIEKLVSK 232 (524)
Q Consensus 191 ~~~~~-----~~~~~---------------------------~~~~~~~~------~~~~~g~iLVF~~~~~~~~~~~~~ 232 (524)
....+ .+.+. +..+.+.. ...++.+.+||+.-..-.+.+...
T Consensus 432 ~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~ 511 (689)
T KOG1000|consen 432 GGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVE 511 (689)
T ss_pred CCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHH
Confidence 11100 00000 01111111 123456899999988888878777
Q ss_pred HHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC-ceE-EEEecCccccccCCCCeeEEEeCCccc
Q 009842 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTVDGVVYVIDCGYVK 302 (524)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~-ilvaT~i~e~gidip~v~~VId~g~~k 302 (524)
+.+. ++...-+.|..+..+|...-+.|... +.+ .+++-..+.+|+|+.+.+.||-..++.
T Consensus 512 ~~~r----------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 512 VNKR----------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred HHHc----------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 7776 77788899999999999999988754 334 467788899999999999999765544
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=98.80 E-value=1.4e-08 Score=106.37 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=79.4
Q ss_pred CEEEecCcHHHHHHHHHHHHHHhh----hcCCC-CCCCeEEEEecCCCCHHHHhccc---CCCCCCceEEEEecCccccc
Q 009842 215 DVLIFMTGQDDIEKLVSKLEDKIR----SLDEG-SCMDAVILPLHGSLPPEMQVRVF---SPPPPNCRRFIVSTNIAETS 286 (524)
Q Consensus 215 ~iLVF~~~~~~~~~~~~~L~~~~~----~~~~~-~~~~~~v~~lh~~l~~~~r~~v~---~~f~~g~~~ilvaT~i~e~g 286 (524)
+.+-||.+.++...+++.+.+... ++..+ ....+.+-...|.|...+|.+.+ ..|.....+|+----.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 678999999888888887765432 12112 21244454556788888885543 35678899999988899999
Q ss_pred cCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEE
Q 009842 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCY 341 (524)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~ 341 (524)
||+|..+-||- |||+. |....+|-.||.-|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~----------smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRS----------SMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCch----------hHHHHHHHHHHHHHhCcCCcc
Confidence 99999999995 45544 666788999999999877543
No 152
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.70 E-value=1.4e-06 Score=93.02 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=65.0
Q ss_pred CCeEEEEecCCCCHHHHhcccCCCCCC--c-eEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecH
Q 009842 246 MDAVILPLHGSLPPEMQVRVFSPPPPN--C-RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (524)
Q Consensus 246 ~~~~v~~lh~~l~~~~r~~v~~~f~~g--~-~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~ 322 (524)
.+..++.+||.|+..+|+.+.+.|.+. . .-.+.+|-+.+.||++=+...||-++ ..|||. --
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D----~dWNPa-----------~d 682 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFD----PDWNPA-----------VD 682 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeC----CCCCch-----------hH
Confidence 388999999999999999999999754 3 33566778889999998887777543 345543 22
Q ss_pred HhHHhhccccCCCCCCeEEEecCchhhhh
Q 009842 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 323 ~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
.+++-|+=|-|-.++=..|+|.+....+.
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 34444444545456778899987766554
No 153
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.5e-08 Score=92.97 Aligned_cols=150 Identities=22% Similarity=0.309 Sum_probs=92.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-------hH-HHHHHHHHHHHhCCcccc--------e
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------VA-AVSVARRVAQELGVRLGE--------E 80 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-------~l-a~~~~~~~~~~~~~~~~~--------~ 80 (524)
+.+|+.+.|+||+|+||||++..++....+..|...+...|.+ +. +-|.. .+-..+...+.+ .
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~-~~d~~fP~tV~d~V~~g~~~~ 105 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS-SVDRSFPITVKDVVLLGRYGK 105 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc-ccCCCCCcCHHHHHHccCccc
Confidence 5689999999999999999999999977665555443333210 00 00100 000111111111 1
Q ss_pred EeEEeeccc---------------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 81 VGYAIRFED---------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 81 vg~~~~~~~---------------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.|+--+... ..-.+.+|--.+.|.++|.++++.++++.+++++||.- .++|......++..+..
T Consensus 106 ~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 106 KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKE 184 (254)
T ss_pred ccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHH
Confidence 111000000 00124567779999999999999999999999999998 68888777666655555
Q ss_pred hcccCcEEEEEeccCChHHHhhhcC
Q 009842 146 LRASKLKILITSATLDGEKVSKFFS 170 (524)
Q Consensus 146 ~~~~~~~ii~~SATl~~~~~~~~~~ 170 (524)
.+.++..+++.|+-+ ....+|++
T Consensus 185 l~~eg~tIl~vtHDL--~~v~~~~D 207 (254)
T COG1121 185 LRQEGKTVLMVTHDL--GLVMAYFD 207 (254)
T ss_pred HHHCCCEEEEEeCCc--HHhHhhCC
Confidence 555456666666544 45666663
No 154
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.69 E-value=1.3e-07 Score=88.75 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=92.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHHH---HHh----CCcccceEeEE---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---QEL----GVRLGEEVGYA--- 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~~---~~~----~~~~~~~vg~~--- 84 (524)
.+.+|+.+.|.||+||||||++..+.....+..|...+...+... ...++|++++ +.. +..+.+.|.++
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 356899999999999999999999998887766666665555332 3444555542 221 12222222111
Q ss_pred --eecccccC------------------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 85 --IRFEDRTS------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 85 --~~~~~~~~------------------~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
..+..... ....+--.+.|..++.+++....++.+++++||.. ..+|.....++++.+.
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT-s~LDi~~Q~evl~ll~ 182 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT-SHLDIAHQIEVLELLR 182 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc-cccCHHHHHHHHHHHH
Confidence 00110000 11234457899999999999999999999999998 6777777666666555
Q ss_pred hhcc-cCcEEEEEeccCC
Q 009842 145 NLRA-SKLKILITSATLD 161 (524)
Q Consensus 145 ~~~~-~~~~ii~~SATl~ 161 (524)
+... .+..+|+..+-+|
T Consensus 183 ~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 183 DLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 5442 2455666655543
No 155
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.67 E-value=7.6e-09 Score=110.48 Aligned_cols=232 Identities=16% Similarity=0.161 Sum_probs=142.8
Q ss_pred CCCCchHHHHHHHHHhcc----------------CCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHH
Q 009842 2 ANLPILQYEETIVETVEQ----------------NPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVS 64 (524)
Q Consensus 2 ~~lpi~~~~~~i~~~l~~----------------~~~~ii~~pTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~ 64 (524)
.++|+...+....+.+.+ +.+.++-+|||+|||..+...+... ...++.+++++.|.++++.+
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 356666666655555443 2345778899999995444443322 23346789999999999988
Q ss_pred HHHHHHHHhCCcccceEeE---EeecccccCcccceeecchHHHHHHHH---hCCCCCCCceEEEeCCCcCCCChHHHHH
Q 009842 65 VARRVAQELGVRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREIL---SNPDLSPYSVIILDEAHERSLNTDILLG 138 (524)
Q Consensus 65 ~~~~~~~~~~~~~~~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~---~~~~l~~~~~iIiDE~H~~~~~~~~~~~ 138 (524)
.+.+..+..... |..++. .+.-+-..-.+++++++||+....... ....+++++.+|+||.|+.+-+.+..++
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle 1067 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLE 1067 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEE
Confidence 877776554433 333321 111121223568899999987765543 4448999999999999976655454444
Q ss_pred HHHHHHh----hcccCcEEEEEeccC-ChHHHhhhcCCCCeeec--CCcccceeEEecCCCCcchHHHH---HHHHHHHH
Q 009842 139 LVKRLVN----LRASKLKILITSATL-DGEKVSKFFSNCPTLNV--PGKLYPVEILHSKERPTSYLESA---LKTAIDIH 208 (524)
Q Consensus 139 ~l~~i~~----~~~~~~~ii~~SATl-~~~~~~~~~~~~~~~~i--~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~ 208 (524)
++..... ..++..+++++|--+ +..++++|++..+.... .-++.|.+.+....+...|...+ -+...+..
T Consensus 1068 ~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qai 1147 (1230)
T KOG0952|consen 1068 VIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAI 1147 (1230)
T ss_pred EEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHH
Confidence 3322222 222456777776444 77889999987766444 34667777777666654443322 22223322
Q ss_pred -hcCCCCCEEEecCcHHHHHHHHHHHH
Q 009842 209 -VREPEGDVLIFMTGQDDIEKLVSKLE 234 (524)
Q Consensus 209 -~~~~~g~iLVF~~~~~~~~~~~~~L~ 234 (524)
...+..++|||+.+++...-.+.-|.
T Consensus 1148 k~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1148 KTHSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred hcCCCCCceEEEeecccccccchHhHH
Confidence 33556799999998886655544443
No 156
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.62 E-value=1.3e-07 Score=83.62 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=88.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc----------------------hhHHHHHHHHHHHHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR----------------------RVAAVSVARRVAQELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~----------------------r~la~~~~~~~~~~~~ 74 (524)
+++|+++.+.||+|+||||++..+.....+++|...+....+ |..+.+.-..++...+
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~ 104 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG 104 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh
Confidence 468999999999999999999999888877776655443322 2233333333333332
Q ss_pred CcccceEeE----EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 75 VRLGEEVGY----AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 75 ~~~~~~vg~----~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
..-...-.- ..+++-..-.+.++--.+.|+.++..+.+...++++++|+||+- ..+|.-....+-+.+...+.++
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcCC
Confidence 211100000 00000000112344446788888888888899999999999998 6788777777555555555545
Q ss_pred cEEEEEeccCC
Q 009842 151 LKILITSATLD 161 (524)
Q Consensus 151 ~~ii~~SATl~ 161 (524)
.-+|+.|+-++
T Consensus 184 r~viFSSH~m~ 194 (245)
T COG4555 184 RAVIFSSHIMQ 194 (245)
T ss_pred cEEEEecccHH
Confidence 55666666553
No 157
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.62 E-value=3.5e-07 Score=81.38 Aligned_cols=120 Identities=21% Similarity=0.216 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
+.+|+.+.+.||+||||||++..+.....+..|...+-..+..... ..+ .. ...+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--~~~----~~----~~~i~~~~q---------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--PRD----AR----RAGIAMVYQ---------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--HHH----HH----hcCeEEEEe----------
Confidence 5789999999999999999999998877665554333222211110 000 00 112343221
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.|+..+.......+.+.+++++||+- ..+|......+.+.+......+..+|+.|..+
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 8999999999888899999999999998 78888877665555544433355666666554
No 158
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.61 E-value=4e-07 Score=81.74 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=77.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 95 (524)
.+.+|+.+.|+||+||||||++..+........|. +.+-- ..++|.....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g----------------------~~i~~~~q~~------- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEWDG----------------------ITPVYKPQYI------- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE-EEECC----------------------EEEEEEcccC-------
Confidence 56899999999999999999999988877665444 33221 0133321100
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC-cEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~-~~ii~~SATl 160 (524)
. .+.|+..+.......+.+.+++++||+- ..+|......+...+....... ..+|+.|+.+
T Consensus 71 ~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 71 D---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 0 7889998888888889999999999998 7888877666555554433322 5566666654
No 159
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.59 E-value=3.3e-07 Score=82.12 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=92.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc--hhHHHHHHHHH---HHHhCCcccceEeEEee----
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR--RVAAVSVARRV---AQELGVRLGEEVGYAIR---- 86 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~--r~la~~~~~~~---~~~~~~~~~~~vg~~~~---- 86 (524)
.+.+|++++|+||.||||||++..+......++|.+.+-.... +.-..++-+++ .+.++.....++..++.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4678999999999999999999999887777666544433211 11111111111 12222221111110000
Q ss_pred ----------------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 87 ----------------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 87 ----------------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
..++. +.-=.-.+.|.-+|..+.+.+.-+++++.+||+- ..+|.....+++.-+.
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka--~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT-SALDPElv~EVL~vm~ 180 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKA--DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT-SALDPELVGEVLDVMK 180 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhh--hhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc-ccCCHHHHHHHHHHHH
Confidence 00000 0011126889999999999999999999999998 7899999888888887
Q ss_pred hhcccCcEEEEEeccCC
Q 009842 145 NLRASKLKILITSATLD 161 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~ 161 (524)
....++...++.|+-+.
T Consensus 181 ~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 181 DLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHcCCeEEEEechhH
Confidence 77777888899888774
No 160
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=9.7e-08 Score=86.40 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=81.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccc---ccCc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED---RTSE 93 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~---~~~~ 93 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+..... +...... ..++|...... ....
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~--------~~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE-DELPPLR--------RRIGMVFQDFALFPHLTV 93 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-hhHHHHh--------hcEEEEecCCccCCCCCH
Confidence 5689999999999999999999998876655454333232211110 0001111 12232221111 0111
Q ss_pred ccceee-cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 94 RTLIKY-LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 94 ~~~i~~-~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.-.+.+ .+.|+..+..+....+.+.+++|+||+. ..+|.+....+.+.+...... +..+|+.|+-+
T Consensus 94 ~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 94 LENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 112323 8999999999888899999999999998 788888766655555444432 35566666543
No 161
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.55 E-value=7.1e-07 Score=80.32 Aligned_cols=130 Identities=22% Similarity=0.200 Sum_probs=81.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccccc--Ccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT--SER 94 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~--~~~ 94 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+...... ..+.. .++|........ .-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~~--------~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP---NELGD--------HVGYLPQDDELFSGSIA 93 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH---HHHHh--------heEEECCCCccccCcHH
Confidence 56899999999999999999999998876655543332222111000 01111 122211100000 000
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
-.+ .+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 94 ~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 111 8899999999988899999999999998 78888776665555544433355677766654
No 162
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=1.4e-07 Score=85.02 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=81.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccccc---Cc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT---SE 93 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~---~~ 93 (524)
+.+|+.+.|+||+||||||++..+........|...+-..+..... .... ..++|........ ..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~--------~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP----EEVK--------RRIGYLPEEPSLYENLTV 90 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch----Hhhh--------ccEEEEecCCccccCCcH
Confidence 5689999999999999999999988876655554433333321110 1111 1233322111000 10
Q ss_pred ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
...+ ..+.|+..+..+......+.+++++||+- ..+|......+++.+......+..+|+.|+-
T Consensus 91 ~~~~-~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 91 RENL-KLSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHh-hcCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 0111 17899999998888899999999999998 7888888777656555544334556666554
No 163
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.54 E-value=7e-07 Score=77.64 Aligned_cols=105 Identities=22% Similarity=0.307 Sum_probs=74.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
+..|+.+.|.||+||||||++..+........| .+.+--. ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~---------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGST---------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCe---------------------EEEEEEcc----------
Confidence 568999999999999999999998887665544 3333210 13443221
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.|...+..+....+.+.+++++||+- ..+|.+....+.+.+.. . ...+++.|..+
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~-~--~~til~~th~~ 127 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKE-Y--PGTVILVSHDR 127 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH-c--CCEEEEEECCH
Confidence 8899999988888899999999999998 78888776665444433 2 23556655543
No 164
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=8.7e-07 Score=79.60 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=80.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccc--cCcc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR--TSER 94 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~ 94 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+..... ...... .++|....... .+..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~---~~~~~~--------~i~~~~~~~~~~~~t~~ 93 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD---LESLRK--------NIAYVPQDPFLFSGTIR 93 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC---HHHHHh--------hEEEEcCCchhccchHH
Confidence 5689999999999999999999999887665554433332221100 011111 12221111000 0000
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
-.+ .+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|..+
T Consensus 94 e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 155 (171)
T cd03228 94 ENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAK-GKTVIVIAHRL 155 (171)
T ss_pred HHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 111 8889998888888889999999999998 78888877765555544433 55566665554
No 165
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.51 E-value=5.3e-07 Score=81.76 Aligned_cols=136 Identities=20% Similarity=0.239 Sum_probs=81.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHHHHHhCCcccceEeEEeecccccCccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 95 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+... ........+.-... ....+| .... .+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--~l~~~g----l~~~--~~~ 93 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ--ALELLG----LAHL--ADR 93 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--HHHHcC----CHhH--hcC
Confidence 56899999999999999999999988776655543332222110 01111111110000 001111 0000 112
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|.+....+.+.+.....+ +..+|+.|..++
T Consensus 94 ~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 94 PFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34457899999998888899999999999998 688877766654444433332 456677665543
No 166
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.50 E-value=5.2e-07 Score=82.17 Aligned_cols=144 Identities=22% Similarity=0.301 Sum_probs=97.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhC-----------CcccceEeEE
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-----------VRLGEEVGYA 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~-----------~~~~~~vg~~ 84 (524)
.+.+|+++.|.||.||||||++..++....+++|...+.......+...-...+.+.+| ..+.+.|++.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 35789999999999999999999999999888888777777755554433333444333 3445555554
Q ss_pred eecccccCcc----------------cce-----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCh---HHHHHHH
Q 009842 85 IRFEDRTSER----------------TLI-----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT---DILLGLV 140 (524)
Q Consensus 85 ~~~~~~~~~~----------------~~i-----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~---~~~~~~l 140 (524)
.+.....+.. ..+ --.+.|+..|..+++....+.+++++||.. ..+|. ..+..++
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt-sGLDPI~a~~~~~LI 188 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT-SGLDPISAGVIDELI 188 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC-CCCCcchHHHHHHHH
Confidence 3333222210 000 015778888888888888899999999987 55554 4466666
Q ss_pred HHHHhhcccCcEEEEEeccCCh
Q 009842 141 KRLVNLRASKLKILITSATLDG 162 (524)
Q Consensus 141 ~~i~~~~~~~~~ii~~SATl~~ 162 (524)
+.+.... +..+++.|+-++.
T Consensus 189 ~~L~~~l--g~T~i~VTHDl~s 208 (263)
T COG1127 189 RELNDAL--GLTVIMVTHDLDS 208 (263)
T ss_pred HHHHHhh--CCEEEEEECChHH
Confidence 6666554 6788888887653
No 167
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.50 E-value=9.9e-07 Score=79.80 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=82.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeec---ccccCc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF---EDRTSE 93 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~---~~~~~~ 93 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+.... ...+.. .++|.... ....-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~--------~i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL----EKALSS--------LISVLNQRPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH----HHHHHh--------hEEEEccCCeeecccHH
Confidence 568999999999999999999999888766555443333332111 111111 12221110 000000
Q ss_pred ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.-....+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 157 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLK-DKTLIWITHHL 157 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 0014457889999999988899999999999998 78888776665555554433 55666766554
No 168
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.48 E-value=2.6e-06 Score=84.16 Aligned_cols=129 Identities=28% Similarity=0.324 Sum_probs=90.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC--CCCCcEEEEc-ccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCccc
Q 009842 19 QNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (524)
Q Consensus 19 ~~~~~ii~~pTGsGKTt~l~~~l~~~~--~~~~~~i~~~-~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 95 (524)
+++++.++||||.||||.+..+..... ..+....+++ --.|+.|.++.+..++.++..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 378999999999999954444444333 2223334444 3468889898899999988664
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~~ 170 (524)
.++-+|..+...+. .+.++++|.||=+- |+........-++.+.....+.-..+.+|||...+++.+.+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 23456666665554 57788999999999 676665555557777766654556788999998777665553
No 169
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.47 E-value=5.8e-06 Score=90.17 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=89.0
Q ss_pred CCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCC-ceEEE-EecCccccccCCCC
Q 009842 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRFI-VSTNIAETSLTVDG 291 (524)
Q Consensus 214 g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~il-vaT~i~e~gidip~ 291 (524)
.++||||.=+..+.-+-+-|.+.. .+.+..+.+.|+.++.+|.++.++|.++ .++|+ ++|.+.+-|+|+-+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~-------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY-------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh-------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 489999998888887776665442 1466677899999999999999999988 67765 57889999999999
Q ss_pred eeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCCCCCeEEEecCchhhhh
Q 009842 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 292 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
.+.||-. +-.|||-+. -+++-||-|.|..+-=-+|||+++...+.
T Consensus 1414 ADTVVFv----EHDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFV----EHDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEE----ecCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 9999852 224555432 25566677777666667899999888765
No 170
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.46 E-value=1.7e-06 Score=79.07 Aligned_cols=128 Identities=27% Similarity=0.344 Sum_probs=80.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-EEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccceee
Q 009842 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (524)
Q Consensus 21 ~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~-~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 99 (524)
++++++||||+||||.+..+.......+.. -++.+-..|..+.++.+.+++.++..+.. ... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~-----~------ 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ART-----E------ 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SST-----T------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhc-----c------
Confidence 468999999999997666666554433233 33445567899999999999988754311 000 0
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHH
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~ 165 (524)
-.|..+.+.......-+++++|+||-+. ++........-++.+.......-.++.+|||...+.+
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0233333222221123468999999998 6665555555577777666546788899999966543
No 171
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.1e-06 Score=77.72 Aligned_cols=119 Identities=23% Similarity=0.266 Sum_probs=76.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
+.+|+.++|.|++||||||++..+........+...+-..+.... ...++. ..++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~---~~~~~~--------~~i~~~~q---------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL---PLEELR--------RRIGYVPQ---------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC---CHHHHH--------hceEEEee----------
Confidence 468899999999999999999999887665444332222221110 000111 12333221
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.|+..+..+......+.+++++||+. ..+|......+.+.+......+..+++.|..+
T Consensus 81 ---lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 81 ---LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 7888888888877788889999999998 78888776665555544333235666666554
No 172
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.44 E-value=8.3e-07 Score=86.64 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=88.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc-c---------------------hhHHHHHHHHHHHHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-R---------------------RVAAVSVARRVAQELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P-~---------------------r~la~~~~~~~~~~~~ 74 (524)
+.+|+.+.+.||+||||||++..++....+.+|...+...+ . ...+.+..+.++...+
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 56899999999999999999999998877655543333221 1 1123333333334333
Q ss_pred Ccc---cceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRL---GEEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~---~~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
... ...+- ..+.... ..+..+.-.+.|+..+..+...++.+++++|+||+- .++|......+.+.+.....
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 108 LSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAK 184 (293)
T ss_pred CChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHh
Confidence 221 00000 0001111 113446668999999999988899999999999998 78999888876666665555
Q ss_pred cC-cEEEEEeccC
Q 009842 149 SK-LKILITSATL 160 (524)
Q Consensus 149 ~~-~~ii~~SATl 160 (524)
.+ ..+++.|+-+
T Consensus 185 ~g~~tvlissH~l 197 (293)
T COG1131 185 EGGVTILLSTHIL 197 (293)
T ss_pred CCCcEEEEeCCcH
Confidence 33 3455544444
No 173
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=2.9e-07 Score=85.10 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=82.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC---CCCCcEEEEcccchhHHHHHHHHHH---HHhCCcccceEeEEeecccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVGYAIRFEDR 90 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~---~~~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~~vg~~~~~~~~ 90 (524)
+.+|+.+.|+||+||||||++..+..... ...|...+...+.........+.++ +.........+.....+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 56899999999999999999999888765 3344333333332111000000000 00000000000000000000
Q ss_pred cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009842 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 91 ~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
...+..+.-.+.|...+..+...++.+.+++++||+- ..+|......+.+.+..........++++.+-+.+.+.++
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~ 186 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDL 186 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHh
Confidence 0023344557899999998888899999999999988 7888887666555555443321223334444343344444
No 174
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1.3e-06 Score=79.94 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=87.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-hHH-HHHHHHH---HHHhC------Ccccc--eEeE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-VAA-VSVARRV---AQELG------VRLGE--EVGY 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-~la-~~~~~~~---~~~~~------~~~~~--~vg~ 83 (524)
++.|+..+|.||+||||||++..+..+..+..+...++..+.. .-. .++-+++ +.++. ..+-+ ..|+
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~ 133 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF 133 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecc
Confidence 5689999999999999999999999988876555555555432 111 2232222 11111 11111 1121
Q ss_pred Ee--eccc-cc-------------------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHH
Q 009842 84 AI--RFED-RT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (524)
Q Consensus 84 ~~--~~~~-~~-------------------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~ 141 (524)
.. .... .. -.+......+-|...+.++.+.++.++.++|+||+- .++|......+++
T Consensus 134 ~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll~ 212 (257)
T COG1119 134 FASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLLN 212 (257)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHH
Confidence 10 0000 00 012334447788888999999999999999999987 6777776655555
Q ss_pred HHHhhcc--cCcEEEEEeccC
Q 009842 142 RLVNLRA--SKLKILITSATL 160 (524)
Q Consensus 142 ~i~~~~~--~~~~ii~~SATl 160 (524)
.+..... ....+|+.|+-.
T Consensus 213 ~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 213 RLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred HHHHHhcCCCCceEEEEEcch
Confidence 5544332 267888887754
No 175
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.40 E-value=1.5e-06 Score=78.97 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=81.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeec------ccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF------EDR 90 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~------~~~ 90 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+....... .... ..++|.... ...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~--~~~~--------~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR--DAIR--------AGIAYVPEDRKREGLVLD 92 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHH--HHHh--------CCeEEecCCcccCcccCC
Confidence 568999999999999999999999888766555443333222111000 0010 112222111 000
Q ss_pred cCcccceee---cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 91 TSERTLIKY---LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 91 ~~~~~~i~~---~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+..-.+.+ .+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 010011111 7889999988888899999999999998 78888877665555544433245666666544
No 176
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.40 E-value=3.3e-07 Score=84.17 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=81.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc--CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccc---c
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR---T 91 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~--~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~---~ 91 (524)
+.+|+.++|.||+||||||++..++... ....|...+-..+... .+ +. ..++|....... .
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~----~~--------~~i~~~~q~~~~~~~~ 97 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RS----FR--------KIIGYVPQDDILHPTL 97 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hh----hh--------heEEEccCcccCCCCC
Confidence 5689999999999999999999998877 5554544333333211 01 10 112221110000 0
Q ss_pred C--cc----cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 92 S--ER----TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 92 ~--~~----~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
. .+ ..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|.-++
T Consensus 98 t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 98 TVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0 00 011157889998888888889999999999998 788888776655555544333556677666543
No 177
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=4.8e-06 Score=76.86 Aligned_cols=140 Identities=26% Similarity=0.330 Sum_probs=79.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc------chhHHHH---------HHHHHH---HHhC---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP------RRVAAVS---------VARRVA---QELG--- 74 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P------~r~la~~---------~~~~~~---~~~~--- 74 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+-..| .+..+-| +.+.+. +..+
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~ 104 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK 104 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccch
Confidence 467899999999999999999999998877665543332221 1111111 011100 0000
Q ss_pred -------CcccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 75 -------VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 75 -------~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
...-..||-. .+.+..+ .-.+.|+-+|..+.+....+.+++.+||.- -.+|.-....+-..+++..
T Consensus 105 ~e~~~~a~~~L~~VgL~-~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gALDalTR~~lq~~l~~lw 177 (248)
T COG1116 105 AEARERAKELLELVGLA-GFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPF-GALDALTREELQDELLRLW 177 (248)
T ss_pred HhHHHHHHHHHHHcCCc-chhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCc-chhhHHHHHHHHHHHHHHH
Confidence 0000111100 1111111 127899999999999999999999999987 4565544333322222222
Q ss_pred c-cCcEEEEEeccCCh
Q 009842 148 A-SKLKILITSATLDG 162 (524)
Q Consensus 148 ~-~~~~ii~~SATl~~ 162 (524)
. .+..+++.|+.++.
T Consensus 178 ~~~~~TvllVTHdi~E 193 (248)
T COG1116 178 EETRKTVLLVTHDVDE 193 (248)
T ss_pred HhhCCEEEEEeCCHHH
Confidence 1 25678888877653
No 178
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=3.4e-07 Score=78.26 Aligned_cols=113 Identities=22% Similarity=0.396 Sum_probs=63.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-----CCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccC
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT-----KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS 92 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~-----~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 92 (524)
+++..++|.||+|+|||+++..++...... ....+.+..|.......+++.+.+.++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 456789999999999999998888765321 23355556665555677778887777654332
Q ss_pred cccceeecchHH----HHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 93 ERTLIKYLTDGV----LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 93 ~~~~i~~~T~g~----l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
-.+... +.+.+.... ..+|||||+|... . ......++.+.. ..++++|++.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~----~~~lviDe~~~l~-~-~~~l~~l~~l~~--~~~~~vvl~G 123 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRR----VVLLVIDEADHLF-S-DEFLEFLRSLLN--ESNIKVVLVG 123 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCT----EEEEEEETTHHHH-T-HHHHHHHHHHTC--SCBEEEEEEE
T ss_pred ------cCCHHHHHHHHHHHHHhcC----CeEEEEeChHhcC-C-HHHHHHHHHHHh--CCCCeEEEEE
Confidence 122232 333333222 2799999999521 3 444444555554 2366666654
No 179
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.38 E-value=5e-06 Score=83.61 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCC---CCCcE--EEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcc
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGY---TKSGI--IGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~---~~~~~--i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 94 (524)
+.+++++||||+||||.+..+...... ..+.. ++.+-+.|..+..+.+.+++.+|..+ .+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~------------ 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAI------------ 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Eee------------
Confidence 468999999999999777666654321 12232 33445667777777777777666543 111
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC-cEEEEEeccCChHHHhhhc
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATLDGEKVSKFF 169 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~-~~ii~~SATl~~~~~~~~~ 169 (524)
-++..+...+. .+.++++||||++. ++......+.-++.++.....+ -.++.+|||...+.+.+.|
T Consensus 240 -----~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 240 -----ESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred -----CcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 12333433332 24689999999999 5543332333355555543323 4788999999776665554
No 180
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=4.3e-07 Score=85.04 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=87.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh--HHHHHHHHHH--------HHhCCcccceEeEEee
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRVA--------QELGVRLGEEVGYAIR 86 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~--la~~~~~~~~--------~~~~~~~~~~vg~~~~ 86 (524)
+.+|+.+++.|+|||||||++..+.....+..|...+-..|+.. ...++.+++. +.++..+...+.+...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~ 106 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE 106 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence 56899999999999999999999888777765554444444331 1112222110 1111111111111000
Q ss_pred cccc-------------------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 87 FEDR-------------------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 87 ~~~~-------------------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
.... ...+......+.|...+..++.....+..++|+||+- .++|......+++.+.+..
T Consensus 107 n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~ 185 (235)
T COG1122 107 NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT-AGLDPKGRRELLELLKKLK 185 (235)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHH
Confidence 0000 0012344557788888888877788889999999998 7888888777666666655
Q ss_pred cc-CcEEEEEeccCChHHHhhhc
Q 009842 148 AS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 148 ~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
.. +..+|+.|+ +-+.+..|.
T Consensus 186 ~~~~~tii~~tH--d~~~~~~~a 206 (235)
T COG1122 186 EEGGKTIIIVTH--DLELVLEYA 206 (235)
T ss_pred hcCCCeEEEEeC--cHHHHHhhC
Confidence 42 245555554 444555543
No 181
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.38 E-value=1.3e-06 Score=80.31 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=82.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHH----H---HHHhCCcc----cceEe-
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARR----V---AQELGVRL----GEEVG- 82 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~----~---~~~~~~~~----~~~vg- 82 (524)
.+.+|+.+.|+||+||||||++..+-....++.|...+.......+.. +.+.. + .+.++.-. .+.+.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 357899999999999999999998887777755554444322221111 11110 0 11111110 00000
Q ss_pred ------EEe--------------ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 83 ------YAI--------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 83 ------~~~--------------~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
... ..... ..+....-++.|.-+|..+++....++++|+.||+- -.+|.+.-..++..
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~-~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT-gnLD~~t~~~V~~l 184 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDR-LLKKKPSELSGGQQQRVAIARALINNPKIILADEPT-GNLDSKTAKEVLEL 184 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhh-hccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc-ccCChHHHHHHHHH
Confidence 000 00000 001223457899999999999999999999999998 67888776665555
Q ss_pred HHhhccc-CcEEEEEecc
Q 009842 143 LVNLRAS-KLKILITSAT 159 (524)
Q Consensus 143 i~~~~~~-~~~ii~~SAT 159 (524)
+.....+ +..+|+.|+.
T Consensus 185 l~~~~~~~g~tii~VTHd 202 (226)
T COG1136 185 LRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHhcCCEEEEEcCC
Confidence 5554332 3455555443
No 182
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.38 E-value=5.7e-07 Score=82.66 Aligned_cols=143 Identities=17% Similarity=0.065 Sum_probs=79.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH----------------HHHHHHHHHHhCCc-ccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA----------------VSVARRVAQELGVR-LGE 79 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la----------------~~~~~~~~~~~~~~-~~~ 79 (524)
+..|+.+.|+|++||||||++..++.......|...+-..+..... ..+.+.+....... ...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 102 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE 102 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHH
Confidence 5689999999999999999999999877665543332222210000 00111110000000 000
Q ss_pred eEeEEeec-ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009842 80 EVGYAIRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 80 ~vg~~~~~-~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
.+...... .-....+..+.-.+.|...+.......+.+.+++++||+. ..+|......+.+.+......+..+|+.|+
T Consensus 103 ~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 103 TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 00000000 0000012234447888888888888889999999999998 788888766654444322222556666666
Q ss_pred cC
Q 009842 159 TL 160 (524)
Q Consensus 159 Tl 160 (524)
-+
T Consensus 182 ~~ 183 (195)
T PRK13541 182 LE 183 (195)
T ss_pred Cc
Confidence 54
No 183
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.37 E-value=9.5e-07 Score=81.57 Aligned_cols=144 Identities=20% Similarity=0.184 Sum_probs=82.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH---HHHhC----CcccceEeEE--e--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELG----VRLGEEVGYA--I-- 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~---~~~~~----~~~~~~vg~~--~-- 85 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.........+.+ .+... ..+...+.+. .
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 56899999999999999999999988776655543332222111001111111 00000 0000000000 0
Q ss_pred ---ecc------cc-cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEE
Q 009842 86 ---RFE------DR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (524)
Q Consensus 86 ---~~~------~~-~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~ 155 (524)
... .. ...+..+.-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL-VALDELSLLTIITKIQEHRAKGGAVLL 182 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 000 00 0012233447889998888888899999999999998 788887766655555543333567777
Q ss_pred EeccCC
Q 009842 156 TSATLD 161 (524)
Q Consensus 156 ~SATl~ 161 (524)
.|+...
T Consensus 183 ~sh~~~ 188 (200)
T PRK13540 183 TSHQDL 188 (200)
T ss_pred EeCCch
Confidence 777653
No 184
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.36 E-value=1e-06 Score=77.26 Aligned_cols=150 Identities=22% Similarity=0.322 Sum_probs=87.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-hhHHHHH---HHHH---HHHh----CCcccceEeEE
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSV---ARRV---AQEL----GVRLGEEVGYA 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-r~la~~~---~~~~---~~~~----~~~~~~~vg~~ 84 (524)
.+.+|+.+.++||.|+||||++..++....++.|...+..... +.-..++ -+++ .+.+ ...+.+.|.+.
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4678999999999999999999999988877766544433321 1111110 0000 0000 01111111111
Q ss_pred eeccccc-------------------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 IRFEDRT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ~~~~~~~-------------------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.+..... ..+.-=...+.|.-+|..+++....++.+++-||.- -.+|.+.-.+++..+..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT-GNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT-GNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC-CCCChHHHHHHHHHHHH
Confidence 1100000 001111236788888999999999999999999998 67888887776555544
Q ss_pred hcccCcEEEEEeccCChHHHhhh
Q 009842 146 LRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 146 ~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
....+..+++ ||.+.+.+..+
T Consensus 183 inr~GtTVl~--ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLM--ATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEE--EeccHHHHHhc
Confidence 4433444443 78777766655
No 185
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.36 E-value=3.2e-06 Score=75.46 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccc--ccCcc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED--RTSER 94 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~ 94 (524)
+.+|+.+.|.||+||||||++..++.......|. +.+-.. ..++|...... ...-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~---------------------~~i~~~~q~~~~~~~tv~ 81 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-IGMPEG---------------------EDLLFLPQRPYLPLGTLR 81 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCC---------------------ceEEEECCCCccccccHH
Confidence 5689999999999999999999998876655443 222100 11111100000 00000
Q ss_pred c-----ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 T-----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~-----~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
. ...-.+.|...+..+....+.+.+++++||+- ..+|.+....+.+.+.+ . ...+|+.|+-+
T Consensus 82 ~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~-~--~~tiiivsh~~ 148 (166)
T cd03223 82 EQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKE-L--GITVISVGHRP 148 (166)
T ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHH-h--CCEEEEEeCCh
Confidence 0 23347889999988888899999999999987 67888776665444433 2 35567766654
No 186
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.36 E-value=6.4e-07 Score=88.26 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=84.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH---HHhCCcccceEe----E-----
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG----Y----- 83 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~---~~~~~~~~~~vg----~----- 83 (524)
.+.+|+.+.+.||+||||||++..++....+..|...+...+.........+.++ +.........+. +
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 3568999999999999999999999987766555433322221100001111110 000000000000 0
Q ss_pred Eee--------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 84 AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 84 ~~~--------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
... +.-....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT-TGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhC
Confidence 000 00000113345558899999999888899999999999998 788888776655555444333
Q ss_pred CcEEEEEeccCC
Q 009842 150 KLKILITSATLD 161 (524)
Q Consensus 150 ~~~ii~~SATl~ 161 (524)
+..+|+.|+-++
T Consensus 174 g~tvi~~sH~~~ 185 (302)
T TIGR01188 174 GVTILLTTHYME 185 (302)
T ss_pred CCEEEEECCCHH
Confidence 566777766553
No 187
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=3.3e-06 Score=91.99 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=98.7
Q ss_pred EEEEEeccCCh--HHHhhhcCCCCeeecCCcccceeEEecCC---CCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 009842 152 KILITSATLDG--EKVSKFFSNCPTLNVPGKLYPVEILHSKE---RPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (524)
Q Consensus 152 ~ii~~SATl~~--~~~~~~~~~~~~~~i~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~ 226 (524)
++-+||.|... ..|.+.+ +-.++.||....-...-+... ...+-..+.+..+...+ ..+.||||-+.|.+..
T Consensus 565 kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIY-KLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELS--EAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHH
Confidence 56778888733 3455554 355666665432111111100 11122345566666665 3567999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCccccccCCC--------CeeEEEeC
Q 009842 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVIDC 298 (524)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i~e~gidip--------~v~~VId~ 298 (524)
+.+++.|... ++..-.+++.....+-.-|-+.=+.| .|.||||+|++|-||- +=-+||-+
T Consensus 642 E~lS~~L~~~----------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgT 709 (1112)
T PRK12901 642 ELLSRMLKMR----------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGT 709 (1112)
T ss_pred HHHHHHHHHc----------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEc
Confidence 9999999876 44433455554444444444443333 6999999999999995 22345543
Q ss_pred CcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEEEecCch
Q 009842 299 GYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (524)
Q Consensus 299 g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 347 (524)
..+ .|..-=.|-.|||||. .||.+-.+.|-+
T Consensus 710 erh------------------eSrRID~QLrGRaGRQGDPGsS~f~lSLE 741 (1112)
T PRK12901 710 ERH------------------ESRRVDRQLRGRAGRQGDPGSSQFYVSLE 741 (1112)
T ss_pred cCC------------------CcHHHHHHHhcccccCCCCCcceEEEEcc
Confidence 333 3444456999999999 688765544433
No 188
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.35 E-value=1.1e-06 Score=93.97 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=86.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH---HH---hCCcccceEeEEe---e-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QE---LGVRLGEEVGYAI---R- 86 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~---~~---~~~~~~~~vg~~~---~- 86 (524)
+++|+.+.|+||+||||||++..++....+.+|...+-..+.+....++.+.++ ++ +...+.+.+.+.. .
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~ 437 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATD 437 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCH
Confidence 468999999999999999999999988877666655555554433222222211 00 0001111110000 0
Q ss_pred -----------ccc---ccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 87 -----------FED---RTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 87 -----------~~~---~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
.++ ..+. ++.| .-.+.|..+|..+.+..+++.+++|+||+- ..+|.+.-..+.+.+...
T Consensus 438 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 438 EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHh
Confidence 000 0000 1111 226889999999999999999999999998 788888877766666655
Q ss_pred cccCcEEEEEec
Q 009842 147 RASKLKILITSA 158 (524)
Q Consensus 147 ~~~~~~ii~~SA 158 (524)
.+ +..+|+.|+
T Consensus 517 ~~-~~TvIiItH 527 (529)
T TIGR02868 517 LS-GKTVVVITH 527 (529)
T ss_pred cC-CCEEEEEec
Confidence 44 667777765
No 189
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=4.7e-06 Score=83.06 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=77.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC--cEEEEc-ccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcc
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKS--GIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~--~~i~~~-~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 94 (524)
.++.+++++||||+||||.+..+........+ ...+++ -..|..+.++.+.+++.++..+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--------------- 199 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--------------- 199 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe---------------
Confidence 46889999999999999888877765432222 233333 345677777777777777643211
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHH
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~ 165 (524)
+-+++.+...+. .+.+.++|+||++- +......+.+.+..+.......-.++++|||...+.+
T Consensus 200 ----~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 200 ----VKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ----cCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 122233333332 34578999999998 4544455555566654433334568899999866543
No 190
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.35 E-value=4.3e-06 Score=74.97 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=76.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-----hh-HHHHHHHHHHHHhCCcccceEeEEeeccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-----RV-AAVSVARRVAQELGVRLGEEVGYAIRFED 89 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-----r~-la~~~~~~~~~~~~~~~~~~vg~~~~~~~ 89 (524)
.+.+|+.+.|.||+||||||++..++.. .+...+..... +. ...| ..+.+.++...
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~------------ 78 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGY------------ 78 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEEhH--HHHHHHcCCCc------------
Confidence 3568999999999999999999877531 22221111100 00 0001 11112222110
Q ss_pred ccCcccceeecchHHHHHHHHhCCCCCC--CceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 90 RTSERTLIKYLTDGVLLREILSNPDLSP--YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 90 ~~~~~~~i~~~T~g~l~~~l~~~~~l~~--~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
. ..+..+.-.+.|+..+..+....+.+ .+++++||+- ..++......+.+.+......+..+|+.|+-++
T Consensus 79 ~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 79 L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 0 01223445788998888888888889 9999999997 778887766655555443323567777776653
No 191
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.34 E-value=7.4e-07 Score=87.82 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=84.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH----------------------HHHHHHHHHHHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----------------------AVSVARRVAQELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l----------------------a~~~~~~~~~~~~ 74 (524)
+.+|+.+.+.||+||||||++..++....+..|...+...+.... +.+....++...+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 568999999999999999999999987766555433322221100 1111111111111
Q ss_pred Cccc---ceEeEEe-ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 75 VRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 75 ~~~~---~~vg~~~-~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
.... ..+.... .+.-....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...+......+
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt-~gLD~~~~~~l~~~l~~l~~~g 188 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT-TGLDPQARHLMWERLRSLLARG 188 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCC
Confidence 0000 0000000 000000123445568899999999888899999999999998 7888888777555554443335
Q ss_pred cEEEEEeccCC
Q 009842 151 LKILITSATLD 161 (524)
Q Consensus 151 ~~ii~~SATl~ 161 (524)
..+|+.|+-++
T Consensus 189 ~till~sH~l~ 199 (306)
T PRK13537 189 KTILLTTHFME 199 (306)
T ss_pred CEEEEECCCHH
Confidence 66777666553
No 192
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=1e-05 Score=80.25 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCccccee
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~ 98 (524)
...++++||||+||||.+..+.......+....++ .-|.|+.+.++.+..++..+..+ +.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v 301 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IA 301 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Ee
Confidence 36889999999999988877766543322223333 34566666655555555444221 11
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCC-hHHHHHHHHHHHhhcccCcEEEEEeccCChHH
Q 009842 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILITSATLDGEK 164 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~-~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~ 164 (524)
..++..+.+.+..-..-.++++|+||-+- ++.. ...+.+ +..++....++-.++.+|||.....
T Consensus 302 ~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~E-L~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 302 VRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHH-HHHHHhhcCCCeEEEEECCccChHH
Confidence 12455565554322222368999999998 4444 334444 4555544333556777999985543
No 193
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.33 E-value=1.5e-06 Score=80.42 Aligned_cols=142 Identities=17% Similarity=0.155 Sum_probs=81.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-------------------HHHHHHHH---Hh
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVAQ---EL 73 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-------------------~~~~~~~~---~~ 73 (524)
.+.+|+.+.|.||+||||||++..++....+..|...+-..+...... .+.+.+.- ..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 356899999999999999999999988776654433322222111000 01111100 00
Q ss_pred CCcccceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 74 GVRLGEEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 74 ~~~~~~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
+......+- ....... ..+..+.-.+.|...+..+....+.+.+++++||+. ..+|......+.+.+......+
T Consensus 103 ~~~~~~~~~~~l~~~gl~~--~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~ 179 (204)
T PRK13538 103 GPGDDEALWEALAQVGLAG--FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAEQG 179 (204)
T ss_pred CccHHHHHHHHHHHcCCHH--HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCC
Confidence 000000000 0000000 012344557889988888888899999999999998 7888887766555554433334
Q ss_pred cEEEEEeccC
Q 009842 151 LKILITSATL 160 (524)
Q Consensus 151 ~~ii~~SATl 160 (524)
..+|+.|.-+
T Consensus 180 ~tiii~sh~~ 189 (204)
T PRK13538 180 GMVILTTHQD 189 (204)
T ss_pred CEEEEEecCh
Confidence 5677776654
No 194
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.33 E-value=1.4e-06 Score=80.46 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=80.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH---HHHhCC----cccceEeEE--eec
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGV----RLGEEVGYA--IRF 87 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~---~~~~~~----~~~~~vg~~--~~~ 87 (524)
+.+|+.+.|+|++||||||++..++.......|...+...+.........+.+ .+.... .+.+.+.+. ...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 102 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS 102 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence 57899999999999999999999888766554443332222110000000110 000000 000000000 000
Q ss_pred ccc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009842 88 EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 88 ~~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (524)
+.. ...+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~ 181 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT-TALDKAGVARFAEAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000 0012334457889999988888899999999999998 7888887766555554433324556666
Q ss_pred ecc
Q 009842 157 SAT 159 (524)
Q Consensus 157 SAT 159 (524)
|.-
T Consensus 182 sH~ 184 (201)
T cd03231 182 THQ 184 (201)
T ss_pred ecC
Confidence 554
No 195
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.33 E-value=1.6e-05 Score=89.47 Aligned_cols=133 Identities=16% Similarity=0.072 Sum_probs=78.9
Q ss_pred CEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccc-eEeEEee-ccccc-Ccccc
Q 009842 21 PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE-EVGYAIR-FEDRT-SERTL 96 (524)
Q Consensus 21 ~~~ii~~pTGsGKT-t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~-~vg~~~~-~~~~~-~~~~~ 96 (524)
+.-+|-=-|||||| |.+-..-..........++++.-|+.|-.|....+...-...... ... +.. ..... .....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~-s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAE-STSELKELLEDGKGK 352 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhccccc-CHHHHHHHHhcCCCc
Confidence 34566678999999 433222222222456689999999999999988775432211110 000 000 00001 12458
Q ss_pred eeecchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~---~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
|+++|-..+........ .-.+==+||+|||| |+-....... ++.. .+ +...+++|.|+
T Consensus 353 ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~~~-~~~~---~~-~a~~~gFTGTP 413 (962)
T COG0610 353 IIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELAKL-LKKA---LK-KAIFIGFTGTP 413 (962)
T ss_pred EEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHHHH-HHHH---hc-cceEEEeeCCc
Confidence 99999888877665441 22333478999999 7876654333 3333 33 57899999998
No 196
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=7.5e-07 Score=81.63 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=78.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC--CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecc---cc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE---DR 90 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~--~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~---~~ 90 (524)
.+.+|+.+.|+||+||||||++..+..... ...|...+-..+.. ..... .++|..... ..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-------~~~~~--------~i~~~~q~~~~~~~ 93 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-------KNFQR--------STGYVEQQDVHSPN 93 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-------HHhhh--------ceEEecccCccccC
Confidence 356899999999999999999999887532 33333332222211 11111 111111000 00
Q ss_pred cC--ccc----ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 91 TS--ERT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 91 ~~--~~~----~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.. .+- .+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-++
T Consensus 94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPT-SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCC-cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 00 000 00147888888888888899999999999998 788888777665555544333566777776654
No 197
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.9e-06 Score=78.89 Aligned_cols=146 Identities=23% Similarity=0.322 Sum_probs=87.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH--HHHHHHH---------------------HHHh
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA--VSVARRV---------------------AQEL 73 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la--~~~~~~~---------------------~~~~ 73 (524)
+.+|+.+.|+|+.||||||+...+++......|.+.+-..|..... ...++.+ .+-+
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 4689999999999999999999999887776655554443321110 0011110 0000
Q ss_pred CC-----------cccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 74 GV-----------RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 74 ~~-----------~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
.. ..-..||-...+-.+. ---.+.|.++|..+.+....+.+++|+||+- ..+|......++..
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt-SaLD~siQa~Ilnl 183 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEPT-SALDVSVQAQILNL 183 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCch-hhhcHHHHHHHHHH
Confidence 00 0000111100111111 1127899999999999999999999999998 67887765555444
Q ss_pred HHhhcc-cCcEEEEEeccCChHHHhhhcCC
Q 009842 143 LVNLRA-SKLKILITSATLDGEKVSKFFSN 171 (524)
Q Consensus 143 i~~~~~-~~~~ii~~SATl~~~~~~~~~~~ 171 (524)
+...+. .++.+|+.|+-+. +..++.+
T Consensus 184 L~~l~~~~~lt~l~IsHdl~---~v~~~cd 210 (252)
T COG1124 184 LLELKKERGLTYLFISHDLA---LVEHMCD 210 (252)
T ss_pred HHHHHHhcCceEEEEeCcHH---HHHHHhh
Confidence 443332 2678899988764 4445543
No 198
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=9.6e-07 Score=92.45 Aligned_cols=141 Identities=24% Similarity=0.266 Sum_probs=90.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHH-H---HHH---hCCcccceEeEEeecc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQE---LGVRLGEEVGYAIRFE 88 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~-~---~~~---~~~~~~~~vg~~~~~~ 88 (524)
.+..|+++.++||.||||||++..+.....+..|.+.+-..|.+..--...++ + +++ ++..+.+.+.|....-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~ 569 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA 569 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC
Confidence 46799999999999999999999888888887777777788876654433332 1 122 2233344444433210
Q ss_pred cc------------------cCcc------cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 89 DR------------------TSER------TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 89 ~~------------------~~~~------~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
.. .+.+ .+=.-++.|..+|..+++.+++++.++|+|||- ..+|...-.. ++..+
T Consensus 570 t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT-SALDaeSE~l-Vq~aL 647 (716)
T KOG0058|consen 570 TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT-SALDAESEYL-VQEAL 647 (716)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh-hhcchhhHHH-HHHHH
Confidence 00 0001 111126789999999999999999999999998 5666654333 44555
Q ss_pred hhcccCcEEEEEec
Q 009842 145 NLRASKLKILITSA 158 (524)
Q Consensus 145 ~~~~~~~~ii~~SA 158 (524)
.....+..+|..-+
T Consensus 648 ~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 648 DRLMQGRTVLVIAH 661 (716)
T ss_pred HHhhcCCeEEEEeh
Confidence 44443544555443
No 199
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=8.9e-07 Score=79.14 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=47.1
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
++.|.-+|+.+++...-+.+++.+||.- ..+|.-.... ++.++...+++..+|+.|+.|.
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPt-SALDPIsT~k-IEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPT-SALDPISTLK-IEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcc-cccCchhHHH-HHHHHHHHHhccEEEEEeCCHH
Confidence 7889999999999888999999999987 5666655555 4444444445899999999983
No 200
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.30 E-value=1.6e-06 Score=80.37 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=80.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-----------------H-HHHHHHHHHHHhCCccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-----------------A-AVSVARRVAQELGVRLG 78 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-----------------l-a~~~~~~~~~~~~~~~~ 78 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+... . ...+.+.+...... .+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-~~ 101 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-LD 101 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh-cC
Confidence 56899999999999999999999988766544432221111100 0 00111111100000 00
Q ss_pred c---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009842 79 E---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 79 ~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (524)
. .+.. ...... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..
T Consensus 102 ~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~t 178 (205)
T cd03226 102 AGNEQAETVLKDLDLYA--LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAAQGKA 178 (205)
T ss_pred ccHHHHHHHHHHcCCch--hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCE
Confidence 0 0000 000000 012334457899999998888889999999999998 788888766655555444333455
Q ss_pred EEEEeccC
Q 009842 153 ILITSATL 160 (524)
Q Consensus 153 ii~~SATl 160 (524)
+|+.|+-+
T Consensus 179 ii~~sH~~ 186 (205)
T cd03226 179 VIVITHDY 186 (205)
T ss_pred EEEEeCCH
Confidence 66666544
No 201
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.30 E-value=2e-06 Score=80.47 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=81.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HH---HHHHHHH---HHhC----CcccceEeEE-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV---SVARRVA---QELG----VRLGEEVGYA- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~---~~~~~~~---~~~~----~~~~~~vg~~- 84 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+.... .. ...+.++ +... ..+.+.+.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence 568999999999999999999999887665544333322221100 00 0001110 0000 0000000000
Q ss_pred ----eec---cc-----------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 85 ----IRF---ED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 85 ----~~~---~~-----------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
... .. ....+....-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 106 RIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT-GNLDPELSRDIMRLFEEF 184 (216)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHH
Confidence 000 00 00012233457889999999888899999999999998 788888777665555544
Q ss_pred cccCcEEEEEeccC
Q 009842 147 RASKLKILITSATL 160 (524)
Q Consensus 147 ~~~~~~ii~~SATl 160 (524)
...+..+|+.|+-+
T Consensus 185 ~~~~~tii~vsH~~ 198 (216)
T TIGR00960 185 NRRGTTVLVATHDI 198 (216)
T ss_pred HHCCCEEEEEeCCH
Confidence 33345666666644
No 202
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.30 E-value=2.4e-06 Score=78.72 Aligned_cols=140 Identities=19% Similarity=0.095 Sum_probs=80.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-------------------HHHHHHHH---HHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-------------------VSVARRVA---QELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-------------------~~~~~~~~---~~~~ 74 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+..... ..+.+.+. ...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 5689999999999999999999988876554443222121111000 00111110 0000
Q ss_pred CcccceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009842 75 VRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 75 ~~~~~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~ 151 (524)
.. ...+.. ...... ..+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+.+.+......+.
T Consensus 103 ~~-~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ 178 (198)
T TIGR01189 103 GA-QRTIEDALAAVGLTG--FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHLARGG 178 (198)
T ss_pred Cc-HHHHHHHHHHcCCHH--HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCC
Confidence 00 000000 000000 012334457889988888888899999999999998 78888876665555554433355
Q ss_pred EEEEEeccC
Q 009842 152 KILITSATL 160 (524)
Q Consensus 152 ~ii~~SATl 160 (524)
.+|+.|+-.
T Consensus 179 tii~~sH~~ 187 (198)
T TIGR01189 179 IVLLTTHQD 187 (198)
T ss_pred EEEEEEccc
Confidence 677777644
No 203
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.29 E-value=1.7e-06 Score=75.39 Aligned_cols=145 Identities=18% Similarity=0.255 Sum_probs=86.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE------cccchhHHHHHHHHHHHHhCCcccceEeEEeeccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~------~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~ 89 (524)
.+..|+.+.|.||.||||||++..+.....+..|...+- +.|..--+.-+++.=.-.....+...+|......-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 356899999999999999999999999887766554432 33422222222211000001122223332211111
Q ss_pred ccCc--c-------cce----------eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-c
Q 009842 90 RTSE--R-------TLI----------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-S 149 (524)
Q Consensus 90 ~~~~--~-------~~i----------~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~ 149 (524)
+.+. . .++ --.+.|..+|..+.+.++++--++.+||.- ..++.....+++.-+...+. +
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF-sALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch-hhcCHHHHHHHHHHHHHHHHhh
Confidence 1100 0 000 115778888888888888888999999998 78888887766555544443 2
Q ss_pred CcEEEEEeccCC
Q 009842 150 KLKILITSATLD 161 (524)
Q Consensus 150 ~~~ii~~SATl~ 161 (524)
+..+++.|++++
T Consensus 180 ~~TllmVTH~~~ 191 (231)
T COG3840 180 KMTLLMVTHHPE 191 (231)
T ss_pred CCEEEEEeCCHH
Confidence 567888888764
No 204
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=7.4e-07 Score=82.99 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=79.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch---------------hH-HHHHHHHHH---HHhCCcc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---------------VA-AVSVARRVA---QELGVRL 77 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r---------------~l-a~~~~~~~~---~~~~~~~ 77 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+.. .. ...+.+.+. ...+...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 102 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKK 102 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCCh
Confidence 5689999999999999999999998876554443222111100 00 001111110 0011000
Q ss_pred cc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009842 78 GE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 78 ~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~ 151 (524)
.. .+.. ...... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+.
T Consensus 103 ~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~-~~LD~~~~~~~~~~l~~~~~~~~ 179 (210)
T cd03269 103 EEARRRIDEWLERLELSE--YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF-SGLDPVNVELLKDVIRELARAGK 179 (210)
T ss_pred HHHHHHHHHHHHHcCChH--HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCC
Confidence 00 0000 000000 012234457889998888888889999999999998 78888876665555544333345
Q ss_pred EEEEEeccC
Q 009842 152 KILITSATL 160 (524)
Q Consensus 152 ~ii~~SATl 160 (524)
.+|+.|+.+
T Consensus 180 tii~~sH~~ 188 (210)
T cd03269 180 TVILSTHQM 188 (210)
T ss_pred EEEEECCCH
Confidence 566655543
No 205
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.28 E-value=9.8e-07 Score=88.01 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=85.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------------HHHHHHHHHHHHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------AAVSVARRVAQELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------------la~~~~~~~~~~~~ 74 (524)
+..|+.+.++||+||||||++..++....+..|...+...+... .+.+....+....+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 56899999999999999999999998776655433322222110 01111111111111
Q ss_pred Cccc---ceEeEEee-cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 75 VRLG---EEVGYAIR-FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 75 ~~~~---~~vg~~~~-~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
.... ..+..... +.-....+..+.-.+.|+..+..+....+.+.+++|+||+- .++|......+.+.+......+
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt-~gLD~~~r~~l~~~l~~l~~~g 222 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLARG 222 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCC
Confidence 0000 00000000 00000123445568899999999888899999999999998 7899888777666555544335
Q ss_pred cEEEEEeccCC
Q 009842 151 LKILITSATLD 161 (524)
Q Consensus 151 ~~ii~~SATl~ 161 (524)
..+|+.|+-++
T Consensus 223 ~tilisSH~l~ 233 (340)
T PRK13536 223 KTILLTTHFME 233 (340)
T ss_pred CEEEEECCCHH
Confidence 66777666553
No 206
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.28 E-value=7.7e-06 Score=75.47 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=79.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc--CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeeccccc--
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT-- 91 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~--~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-- 91 (524)
.+..|+.+.|.|++||||||++..+.... ....|...+...+......+ .+.. ..++|........
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~--~~~~--------~~i~~v~q~~~~~~~ 91 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE--ERAR--------LGIFLAFQYPPEIPG 91 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH--HHhh--------CcEEEeecChhhccC
Confidence 35689999999999999999999988873 33344333333332211111 0000 0122211000000
Q ss_pred -C--cc-cce-eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 92 -S--ER-TLI-KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 92 -~--~~-~~i-~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
. .. ... .-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.+.......+|+.|.-+
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD-SGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 0 00 111 247889999998888899999999999998 78888776665555554433245566655543
No 207
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.26 E-value=3.1e-06 Score=78.56 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=81.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH---HHhC----CcccceE-------
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELG----VRLGEEV------- 81 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~---~~~~----~~~~~~v------- 81 (524)
.+.+|+.+.|.||+||||||++..+........|...+-..+.... ...+.+. +... ..+...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP--DVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch--hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 3568999999999999999999999887665544332222121100 0000000 0000 0000000
Q ss_pred eEE----------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCc
Q 009842 82 GYA----------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (524)
Q Consensus 82 g~~----------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~ 151 (524)
+.. ..... ..+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+...+......+.
T Consensus 102 ~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ 178 (207)
T PRK13539 102 GGEELDIAAALEAVGLAP--LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT-AALDAAAVALFAELIRAHLAQGG 178 (207)
T ss_pred CCcHHHHHHHHHHcCCHH--HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCC
Confidence 000 00000 012233457889998888888899999999999998 78888876665555544333356
Q ss_pred EEEEEeccC
Q 009842 152 KILITSATL 160 (524)
Q Consensus 152 ~ii~~SATl 160 (524)
.+|+.|+-+
T Consensus 179 tiii~sH~~ 187 (207)
T PRK13539 179 IVIAATHIP 187 (207)
T ss_pred EEEEEeCCc
Confidence 677777665
No 208
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.26 E-value=3e-06 Score=80.77 Aligned_cols=137 Identities=12% Similarity=0.179 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcccc-----hhHHHHHHHHHHHHhCC------cccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPR-----RVAAVSVARRVAQELGV------RLGE 79 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~------~i~~~~P~-----r~la~~~~~~~~~~~~~------~~~~ 79 (524)
+..|+.+.|.||+||||||++..+.....+..|. .+.+.... ...+.+.........+. ....
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 4679999999999999999999998876554442 22222111 01111111111000000 0000
Q ss_pred eEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEec
Q 009842 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSA 158 (524)
Q Consensus 80 ~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SA 158 (524)
..| ... ..+..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... .+..+|+.|+
T Consensus 102 ~l~----l~~--~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 102 PLQ----IEQ--ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HcC----CHH--HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 011 010 112344558999999999988999999999999998 78888876665554444332 1456677665
Q ss_pred cC
Q 009842 159 TL 160 (524)
Q Consensus 159 Tl 160 (524)
-+
T Consensus 175 d~ 176 (246)
T cd03237 175 DI 176 (246)
T ss_pred CH
Confidence 54
No 209
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.25 E-value=7.9e-07 Score=83.34 Aligned_cols=144 Identities=18% Similarity=0.208 Sum_probs=82.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHH----HHHHH---HHh----CCcccceEeEE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSV----ARRVA---QEL----GVRLGEEVGYA 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~----~~~~~---~~~----~~~~~~~vg~~ 84 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..+..... .+. .+.++ +.. +..+.+.+.+.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 106 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP 106 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence 5689999999999999999999998877655443333222211000 000 00000 000 00000000000
Q ss_pred -----ee-------ccc-------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 -----IR-------FED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 -----~~-------~~~-------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.. ... ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 107 LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT-GNLDSETGKEVMELLRE 185 (218)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc-ccCCHHHHHHHHHHHHH
Confidence 00 000 00012233447889999998888899999999999998 78888876665555544
Q ss_pred hcc-cCcEEEEEeccCC
Q 009842 146 LRA-SKLKILITSATLD 161 (524)
Q Consensus 146 ~~~-~~~~ii~~SATl~ 161 (524)
... .+..+|+.|+.++
T Consensus 186 ~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 186 LNKEAGTTIVVVTHDPE 202 (218)
T ss_pred HHHhcCCeEEEEECCHH
Confidence 433 2566777777654
No 210
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.25 E-value=2e-06 Score=78.39 Aligned_cols=144 Identities=20% Similarity=0.194 Sum_probs=83.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEE-----------
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA----------- 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~----------- 84 (524)
.+..|+.+.+.|++|+||||.+..++....++.|.+.+...|....+.+.--.+-+++|.-....+-..
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 356899999999999999999999999888877777666666433332222222333332211111100
Q ss_pred ------------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009842 85 ------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 85 ------------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (524)
-+++-......+|.-.+-|.-+..-.-...+.++.++|+||.- ..+|.--...+-..+...+..+..
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF-SGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF-SGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc-cCCChhhHHHHHHHHHHHHhcCCE
Confidence 0111111122344455666554443333467889999999988 566554333322334444445667
Q ss_pred EEEEeccC
Q 009842 153 ILITSATL 160 (524)
Q Consensus 153 ii~~SATl 160 (524)
+|+.|+-|
T Consensus 183 IifSsH~M 190 (300)
T COG4152 183 IIFSSHRM 190 (300)
T ss_pred EEEecchH
Confidence 77777766
No 211
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.25 E-value=2.2e-06 Score=79.57 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=81.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-----hHHHHHHHHH---HHHhC----CcccceE---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAVSVARRV---AQELG----VRLGEEV--- 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-----~la~~~~~~~---~~~~~----~~~~~~v--- 81 (524)
+.+|+.+.|.||+||||||++..++....+..|...+-..+.. .......+.+ .+... ..+.+.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 5689999999999999999999999877655443332222210 0000000000 00000 0000000
Q ss_pred ----eEEee-cc----------c-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 82 ----GYAIR-FE----------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 82 ----g~~~~-~~----------~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
+.... .. . ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPT-GSLDPKNRDEVLDLLLE 179 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHH
Confidence 00000 00 0 00012334457889999888888899999999999998 78888876665555544
Q ss_pred hcccCcEEEEEeccCC
Q 009842 146 LRASKLKILITSATLD 161 (524)
Q Consensus 146 ~~~~~~~ii~~SATl~ 161 (524)
....+..+|+.|+-++
T Consensus 180 ~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 180 LNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHhcCCEEEEEeCCHH
Confidence 3333566777776653
No 212
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.24 E-value=1.5e-05 Score=74.36 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=81.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch---hHHHHHHHHHH---HHhC----CcccceEeEE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---VAAVSVARRVA---QELG----VRLGEEVGYA-- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r---~la~~~~~~~~---~~~~----~~~~~~vg~~-- 84 (524)
+..|+.+.|.||+||||||++..+........|...+-..+.. .......+.++ +... ..+.+.+.+.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 5689999999999999999999999876655443332222210 00000001010 0000 0000000000
Q ss_pred ----eec--------------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 85 ----IRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 85 ----~~~--------------~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
... .-....+..+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT-SALDPELVGEVLDVMKDL 181 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHH
Confidence 000 0000012344557889998888888889999999999998 788888766655555444
Q ss_pred cccCcEEEEEeccC
Q 009842 147 RASKLKILITSATL 160 (524)
Q Consensus 147 ~~~~~~ii~~SATl 160 (524)
...+..+|+.|+-+
T Consensus 182 ~~~~~tvi~~sh~~ 195 (213)
T cd03262 182 AEEGMTMVVVTHEM 195 (213)
T ss_pred HHcCCEEEEEeCCH
Confidence 33345667766543
No 213
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=1.6e-06 Score=81.29 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=79.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-------------------HHHHHHH---HHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVA---QELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-------------------~~~~~~~---~~~~ 74 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+...+...... .+.+.+. ...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG 102 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC
Confidence 56899999999999999999999988765544432221111000000 0111110 0000
Q ss_pred Ccccc---eEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRLGE---EVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~~---~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
..... .+- ....... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 103 VPGAERRERIDELLDFVGLLE--AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT-IGLDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHH--HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHH
Confidence 00000 000 0000000 012334457889999998888899999999999998 78888876665555544433
Q ss_pred c-CcEEEEEeccC
Q 009842 149 S-KLKILITSATL 160 (524)
Q Consensus 149 ~-~~~ii~~SATl 160 (524)
. +..+|+.|+-+
T Consensus 180 ~~~~tvi~~tH~~ 192 (220)
T cd03265 180 EFGMTILLTTHYM 192 (220)
T ss_pred hcCCEEEEEeCCH
Confidence 2 45666666544
No 214
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.23 E-value=5.3e-06 Score=77.45 Aligned_cols=144 Identities=16% Similarity=0.231 Sum_probs=80.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH----HHHHHHHH---HHHh----CCcccceE---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRV---AQEL----GVRLGEEV--- 81 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l----a~~~~~~~---~~~~----~~~~~~~v--- 81 (524)
.+.+|+.+.|+||+||||||++..+........|...+-..+.... .....+.+ .+.. ...+...+
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP 103 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHH
Confidence 3578999999999999999999998887655444332222111000 00000000 0000 00000000
Q ss_pred ----eEEee------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 82 ----GYAIR------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 82 ----g~~~~------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
+.... +.-....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 104 LEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT-GNLDPDLSERILDLLKR 182 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 00000 00000012233457889999988888889999999999998 78888877665555554
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
....+..+|+.|+-+
T Consensus 183 ~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 183 LNKRGTTVIVATHDL 197 (214)
T ss_pred HHHcCCEEEEEeCCH
Confidence 333355666666544
No 215
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.23 E-value=3.6e-06 Score=76.99 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=47.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 124 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 124 PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT-AGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 34457889988888888889999999999998 78888877665555554433356777777654
No 216
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.23 E-value=1.2e-05 Score=75.31 Aligned_cols=140 Identities=25% Similarity=0.264 Sum_probs=88.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHHHHhCCcccceEeEEeecccccCcc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 94 (524)
.+.+|+.+.++|++||||||+...++....++.|...+-..+...+ .....+++.+.+. .+|-...+-.+.+
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~-----~Vgl~~~~~~ryP-- 107 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLE-----KVGLPEEFLYRYP-- 107 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHH-----HhCCCHHHhhcCC--
Confidence 3578999999999999999999999988887766655544442111 1122222322221 1120000111111
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHH---HHHHHHHHhhcccCcEEEEEeccCChHHHhhhcCC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL---LGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~---~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~~~ 171 (524)
--.+.|..+|..+++.+.-+.+++|.||.- .++|.... +.+++.+.... ++..+++|+-+. +.+++.+
T Consensus 108 ---helSGGQrQRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq~~~--~lt~lFIsHDL~---vv~~isd 178 (268)
T COG4608 108 ---HELSGGQRQRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQEEL--GLTYLFISHDLS---VVRYISD 178 (268)
T ss_pred ---cccCchhhhhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHHHHh--CCeEEEEEEEHH---hhhhhcc
Confidence 125778999999999999999999999998 67777554 44444444433 688899888765 4444444
No 217
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=2.9e-06 Score=80.26 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=90.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc----chhHHHHHHHHH---HHHhCC----cccceEeEE
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP----RRVAAVSVARRV---AQELGV----RLGEEVGYA 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P----~r~la~~~~~~~---~~~~~~----~~~~~vg~~ 84 (524)
.+.+|+.+.|+|..|+||||++..+-....++.|...+...- ......+.-+++ .+.++. .+...+.|.
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 467899999999999999999999988777776665554422 111122222222 233332 122222222
Q ss_pred eecccccC-------------------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH---HHHHHHH
Q 009842 85 IRFEDRTS-------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKR 142 (524)
Q Consensus 85 ~~~~~~~~-------------------~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~---~~~~l~~ 142 (524)
........ .+.--.-.+.|..+|..+.+....+++++..||+- ..+|... .+.+++.
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT-SALDP~TT~sIL~LL~~ 186 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT-SALDPETTQSILELLKD 186 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHH
Confidence 21111100 01111226788889999999999999999999998 6677655 5566666
Q ss_pred HHhhcccCcEEEEEeccCC
Q 009842 143 LVNLRASKLKILITSATLD 161 (524)
Q Consensus 143 i~~~~~~~~~ii~~SATl~ 161 (524)
+-+.. ++.+++.|+.|+
T Consensus 187 In~~l--glTIvlITHEm~ 203 (339)
T COG1135 187 INREL--GLTIVLITHEME 203 (339)
T ss_pred HHHHc--CCEEEEEechHH
Confidence 65554 789999999886
No 218
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=1.5e-05 Score=73.27 Aligned_cols=151 Identities=21% Similarity=0.192 Sum_probs=91.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc--ccchhH---------HHHHHHHHHHHhCCcccc---eEe
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT--QPRRVA---------AVSVARRVAQELGVRLGE---EVG 82 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~--~P~r~l---------a~~~~~~~~~~~~~~~~~---~vg 82 (524)
+.+|+.+.++|++||||||++..+.....++.|...+-. .|.-.+ ..+...-....+|....+ .+.
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 457899999999999999999999888877765433211 111110 111111112222211000 000
Q ss_pred EEeecccc-cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 83 YAIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 83 ~~~~~~~~-~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.-+.|..- .--+..+.-.+.|+..|+..+-..-.+++++|+||+= ..-|..|......++.....++..+|+.|+.+
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~- 207 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVLVSHDL- 207 (249)
T ss_pred HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-
Confidence 00000000 0013456667899999999888888899999999986 56788888777777777644466677766654
Q ss_pred hHHHhhhcC
Q 009842 162 GEKVSKFFS 170 (524)
Q Consensus 162 ~~~~~~~~~ 170 (524)
+.+++|.+
T Consensus 208 -~~I~~~Cd 215 (249)
T COG1134 208 -GAIKQYCD 215 (249)
T ss_pred -HHHHHhcC
Confidence 45666653
No 219
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=2.5e-06 Score=80.89 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=80.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-H---HHHHHHH---HHHhC----CcccceEeEE-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-A---VSVARRV---AQELG----VRLGEEVGYA- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a---~~~~~~~---~~~~~----~~~~~~vg~~- 84 (524)
+.+|+.+.|+||+||||||++..+.....+..|...+-..+.... . ....+.+ .+... ..+...+.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 102 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL 102 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHH
Confidence 568999999999999999999999987665544333222221000 0 0000000 00000 0000000000
Q ss_pred -----eec---c----------c-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 -----IRF---E----------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 -----~~~---~----------~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
... . . ....+..+.-.+.|+..+..+...++.+.+++++||+- ..+|......+.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 103 REHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT-AGLDPIASGVIDDLIRS 181 (235)
T ss_pred hhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHH
Confidence 000 0 0 00012334457899999999888899999999999998 78888776665555544
Q ss_pred hcc-cCcEEEEEeccC
Q 009842 146 LRA-SKLKILITSATL 160 (524)
Q Consensus 146 ~~~-~~~~ii~~SATl 160 (524)
... .+..+|+.|+-+
T Consensus 182 ~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 182 LKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHhcCcEEEEEecCH
Confidence 332 145677766544
No 220
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.22 E-value=3.7e-06 Score=78.12 Aligned_cols=148 Identities=23% Similarity=0.300 Sum_probs=81.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHH---HHhC----CcccceE-------e
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELG----VRLGEEV-------G 82 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~---~~~~----~~~~~~v-------g 82 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+.... ....+.++ +... ..+.+.+ +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALIEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC
Confidence 568999999999999999999999887665544333322221110 00000000 0000 0000000 0
Q ss_pred EEe-ecc---cc----cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 83 YAI-RFE---DR----TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 83 ~~~-~~~---~~----~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
... ... .. ...+..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......+..+|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii 180 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT-NGLDPDGIKELRELILSLRDQGITVL 180 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 000 000 00 0012233447888888888888889999999999998 78888877766555544433245555
Q ss_pred EEeccCChHHHhhh
Q 009842 155 ITSATLDGEKVSKF 168 (524)
Q Consensus 155 ~~SATl~~~~~~~~ 168 (524)
+.|+ +.+.+..+
T Consensus 181 ~~tH--~~~~~~~~ 192 (208)
T cd03268 181 ISSH--LLSEIQKV 192 (208)
T ss_pred EEcC--CHHHHHHh
Confidence 5554 44444443
No 221
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.22 E-value=3.4e-06 Score=78.60 Aligned_cols=143 Identities=23% Similarity=0.255 Sum_probs=81.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---HH-----hCCcccceE------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QE-----LGVRLGEEV------ 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~---~~-----~~~~~~~~v------ 81 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+.... .....+.++ +. ....+...+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 568999999999999999999999887665544332211111000 000001110 00 000000000
Q ss_pred -eEEee------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 82 -GYAIR------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 82 -g~~~~------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
+.... +.-....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+.....
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~ 182 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT-AGLDPAGRRELLELLKKLKA 182 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 00000 00000012334558899999998888899999999999998 78888877766555554443
Q ss_pred cCcEEEEEeccC
Q 009842 149 SKLKILITSATL 160 (524)
Q Consensus 149 ~~~~ii~~SATl 160 (524)
.+..+|+.|+-+
T Consensus 183 ~~~tvi~~sH~~ 194 (211)
T cd03225 183 EGKTIIIVTHDL 194 (211)
T ss_pred cCCEEEEEeCCH
Confidence 345666666654
No 222
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.22 E-value=1.8e-06 Score=80.96 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=79.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH---HHHhC----CcccceEeE-----E
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELG----VRLGEEVGY-----A 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~---~~~~~----~~~~~~vg~-----~ 84 (524)
+..|+.+.|.|++||||||++..+........|...+-..+.........+.+ .+... ..+.+.+.+ .
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999988766554433222211110000000000 00000 000000000 0
Q ss_pred eec-------c---c----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 85 IRF-------E---D----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 85 ~~~-------~---~----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
... . . ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~ 186 (218)
T cd03266 108 LKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT-TGLDVMATRALREFIRQLRALG 186 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHCC
Confidence 000 0 0 00012233447888888888888889999999999998 7888887666555554443334
Q ss_pred cEEEEEeccC
Q 009842 151 LKILITSATL 160 (524)
Q Consensus 151 ~~ii~~SATl 160 (524)
..+|+.|+-+
T Consensus 187 ~tii~~tH~~ 196 (218)
T cd03266 187 KCILFSTHIM 196 (218)
T ss_pred CEEEEEeCCH
Confidence 5666665544
No 223
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=2.9e-06 Score=80.39 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=84.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH----HHHHHHHHH---HHhC----CcccceEeE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----AVSVARRVA---QELG----VRLGEEVGY-- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l----a~~~~~~~~---~~~~----~~~~~~vg~-- 83 (524)
+.+|+.+.|+||+||||||++..+........|...+-..+.... .....+.++ +... ..+...+.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL 107 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHH
Confidence 568999999999999999999999887766555433322221000 000001100 0000 000000000
Q ss_pred ---Eee--------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 84 ---AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 84 ---~~~--------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
... +.-....+..+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+...
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 108 EIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT-SALDPETTQSILALLRDI 186 (233)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHHH
Confidence 000 00000012234457889999988888899999999999998 788888776655555444
Q ss_pred ccc-CcEEEEEeccCChHHHhhhc
Q 009842 147 RAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 147 ~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
... +..+|+.|+-+ +.+..+.
T Consensus 187 ~~~~~~tvii~sH~~--~~~~~~~ 208 (233)
T cd03258 187 NRELGLTIVLITHEM--EVVKRIC 208 (233)
T ss_pred HHHcCCEEEEEeCCH--HHHHHhC
Confidence 332 45666666644 3444444
No 224
>PRK10908 cell division protein FtsE; Provisional
Probab=98.21 E-value=3.3e-06 Score=79.39 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=80.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHH---HHHHHH---HHh----CCcccceEeEE-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVS---VARRVA---QEL----GVRLGEEVGYA- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~---~~~~~~---~~~----~~~~~~~vg~~- 84 (524)
+.+|+.+.|.||+||||||++..+........|...+...+.... ..+ ..+.++ +.. ...+...+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHH
Confidence 568999999999999999999999887665544332222111100 000 001110 000 00000000000
Q ss_pred ----eecc----------c----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 85 ----IRFE----------D----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 85 ----~~~~----------~----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
.... . ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~ 183 (222)
T PRK10908 105 IIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT-GNLDDALSEGILRLFEEF 183 (222)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHH
Confidence 0000 0 00012334457888988888888889999999999998 788887766655544443
Q ss_pred cccCcEEEEEeccC
Q 009842 147 RASKLKILITSATL 160 (524)
Q Consensus 147 ~~~~~~ii~~SATl 160 (524)
...+..+|+.|+.+
T Consensus 184 ~~~~~tiii~sH~~ 197 (222)
T PRK10908 184 NRVGVTVLMATHDI 197 (222)
T ss_pred HHCCCEEEEEeCCH
Confidence 33356677776654
No 225
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.20 E-value=6.2e-06 Score=76.98 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh---------------HH--HHHHHHHHH--Hh-CCc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV---------------AA--VSVARRVAQ--EL-GVR 76 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~---------------la--~~~~~~~~~--~~-~~~ 76 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+... .. ..+.+.+.. .. +..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 113 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence 56899999999999999999999988765544432221111000 00 011111100 00 000
Q ss_pred ccceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEE
Q 009842 77 LGEEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (524)
Q Consensus 77 ~~~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (524)
....+. ...... ...+..+...+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+
T Consensus 114 ~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ti 190 (214)
T PRK13543 114 AKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY-ANLDLEGITLVNRMISAHLRGGGAA 190 (214)
T ss_pred HHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 000000 000000 0113445568899999988888899999999999988 7788877666544444333334566
Q ss_pred EEEeccC
Q 009842 154 LITSATL 160 (524)
Q Consensus 154 i~~SATl 160 (524)
|+.|+-+
T Consensus 191 ii~sH~~ 197 (214)
T PRK13543 191 LVTTHGA 197 (214)
T ss_pred EEEecCh
Confidence 6666544
No 226
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.20 E-value=3e-06 Score=81.01 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=79.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-------EEEcccchhHH----HHHHHHHHHHhCCc------ccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-------IGVTQPRRVAA----VSVARRVAQELGVR------LGE 79 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~-------i~~~~P~r~la----~~~~~~~~~~~~~~------~~~ 79 (524)
+.+|+.+.|.||+||||||++..+.....+..|.. +.++.....+. ..+...+....+.. ...
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 56899999999999999999999988765544421 22211110000 01111110000000 000
Q ss_pred eEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEec
Q 009842 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSA 158 (524)
Q Consensus 80 ~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SA 158 (524)
.+| ... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|.
T Consensus 107 ~~g----l~~--~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH 179 (251)
T PRK09544 107 RVQ----AGH--LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT-QGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179 (251)
T ss_pred HcC----ChH--HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 000 000 012345568899999998888889999999999998 788888766655555443322 456666665
Q ss_pred cC
Q 009842 159 TL 160 (524)
Q Consensus 159 Tl 160 (524)
-+
T Consensus 180 ~~ 181 (251)
T PRK09544 180 DL 181 (251)
T ss_pred CH
Confidence 54
No 227
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.20 E-value=2.2e-06 Score=84.43 Aligned_cols=141 Identities=21% Similarity=0.264 Sum_probs=81.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-------------------HHHHHHH---HHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVA---QELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-------------------~~~~~~~---~~~~ 74 (524)
+.+|+.+.+.||+||||||++..++....+..|...+...+...... .+.+.+. ...+
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 56899999999999999999999988765544433222211100000 0111110 0000
Q ss_pred Cccc---ceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRLG---EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~---~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.... ..+. ...... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~ 183 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLA 183 (303)
T ss_pred CCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHh
Confidence 0000 0000 000000 0012344557899999998888899999999999998 78888877665555544433
Q ss_pred cCcEEEEEeccC
Q 009842 149 SKLKILITSATL 160 (524)
Q Consensus 149 ~~~~ii~~SATl 160 (524)
.+..+|+.|+-+
T Consensus 184 ~g~til~~sH~~ 195 (303)
T TIGR01288 184 RGKTILLTTHFM 195 (303)
T ss_pred CCCEEEEECCCH
Confidence 355666666654
No 228
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.20 E-value=2.6e-06 Score=79.95 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=82.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-------------------HHHHHHH---HHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVA---QELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-------------------~~~~~~~---~~~~ 74 (524)
+.+|+.+.|+||+||||||++..+.....+..|...+-..+...... .+.+.+. ...+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 56899999999999999999999988766554433222222100000 0111110 0000
Q ss_pred Ccccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
..... .+-. ..... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+.....
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 105 LPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRK 181 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhc
Confidence 00000 0000 00000 0012334457889998888888899999999999998 78888877776665555443
Q ss_pred cCcEEEEEeccCChHHHhhhc
Q 009842 149 SKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 149 ~~~~ii~~SATl~~~~~~~~~ 169 (524)
+..+|+.|+- .+.+..+.
T Consensus 182 -~~tii~~sH~--~~~~~~~~ 199 (220)
T cd03263 182 -GRSIILTTHS--MDEAEALC 199 (220)
T ss_pred -CCEEEEEcCC--HHHHHHhc
Confidence 4555555544 33444443
No 229
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.20 E-value=2e-06 Score=84.64 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=82.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHH-------------------HHHH---HHHhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV-------------------ARRV---AQELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~-------------------~~~~---~~~~~ 74 (524)
+.+|+.+.+.||+||||||++..++....+..|...+...+........ .+.+ +...+
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5689999999999999999999998876665543322222210000011 1111 01111
Q ss_pred Cccc---ceEeEEe-ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccC
Q 009842 75 VRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (524)
Q Consensus 75 ~~~~---~~vg~~~-~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~ 150 (524)
.... ..+.... .+.-....+..+.-.+.|+..+..+....+.+..++++||+- ..+|......+.+.+..... +
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~-~ 182 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGK-D 182 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcC-C
Confidence 0000 0000000 000000113445568999999999888899999999999998 78888877765555544433 5
Q ss_pred cEEEEEeccCC
Q 009842 151 LKILITSATLD 161 (524)
Q Consensus 151 ~~ii~~SATl~ 161 (524)
..+|+.|+-++
T Consensus 183 ~tiii~sH~l~ 193 (301)
T TIGR03522 183 KTIILSTHIMQ 193 (301)
T ss_pred CEEEEEcCCHH
Confidence 66666666553
No 230
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=5.3e-06 Score=80.71 Aligned_cols=144 Identities=21% Similarity=0.188 Sum_probs=83.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHHH---H-----HhCCcccceEeEEe--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---Q-----ELGVRLGEEVGYAI-- 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~~---~-----~~~~~~~~~vg~~~-- 85 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..+... ...+..+.++ + ..+..+...+.+..
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 56899999999999999999999988876655543332222110 0000000000 0 00001110000000
Q ss_pred ---e-------c-------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 86 ---R-------F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 86 ---~-------~-------~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
. . .-....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT-SMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0 0 0000012344457899999998888899999999999998 78888877765555554433
Q ss_pred c-CcEEEEEeccCC
Q 009842 149 S-KLKILITSATLD 161 (524)
Q Consensus 149 ~-~~~ii~~SATl~ 161 (524)
. +..+|+.|.-++
T Consensus 189 ~~~~tilivsH~~~ 202 (279)
T PRK13635 189 QKGITVLSITHDLD 202 (279)
T ss_pred cCCCEEEEEecCHH
Confidence 2 456777666543
No 231
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.19 E-value=2.3e-05 Score=73.69 Aligned_cols=144 Identities=22% Similarity=0.223 Sum_probs=81.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-------------hH----HHHHHHHHHHHh----CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------------VA----AVSVARRVAQEL----GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-------------~l----a~~~~~~~~~~~----~~ 75 (524)
+.+|+.+.|.|++||||||++..+........|...+-..+.. .. ...+.+.+.... +.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 6789999999999999999999998876554443222221110 00 000111110000 00
Q ss_pred cccc------eEeEEee-cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 76 RLGE------EVGYAIR-FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 76 ~~~~------~vg~~~~-~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.... .+..... +.-....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPF-TGLDMPTQELLTELFIELAG 161 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 0000000 00000012334457889999988888899999999999998 78888877766555554433
Q ss_pred cCcEEEEEeccCC
Q 009842 149 SKLKILITSATLD 161 (524)
Q Consensus 149 ~~~~ii~~SATl~ 161 (524)
.+..+|+.|+-++
T Consensus 162 ~~~tvii~sH~~~ 174 (223)
T TIGR03771 162 AGTAILMTTHDLA 174 (223)
T ss_pred cCCEEEEEeCCHH
Confidence 3556777766543
No 232
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.9e-05 Score=78.04 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=79.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-EEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccc
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~-i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
..+++++++||||+||||.+..+.......+... ++-.-|.|..+.++.+..++..+..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~------------------ 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI------------------ 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE------------------
Confidence 4578999999999999987777765543222222 333446677666666655555443210
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
...+|..+...+.......++++|+||=+- ++....-.+.-+..+......+..++.+|||.......+.+
T Consensus 266 -~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 266 -VATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred -ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 013455555444322234678999999998 44333333333555555443356677889988765555443
No 233
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.19 E-value=5.5e-06 Score=77.90 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=81.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE--------------Ecccchh-H-HHHHHHHHH---HHhCCcc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG--------------VTQPRRV-A-AVSVARRVA---QELGVRL 77 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~--------------~~~P~r~-l-a~~~~~~~~---~~~~~~~ 77 (524)
+.+|+.+.|.||+||||||++..++.......|...+ ++.+... . ...+.+.+. ...+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~ 102 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD 102 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence 5689999999999999999999998876554442211 1111000 0 001111111 0011000
Q ss_pred cceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEE
Q 009842 78 GEEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (524)
Q Consensus 78 ~~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii 154 (524)
..+- .....+. ..+..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......+..+|
T Consensus 103 -~~~~~~l~~~~l~~--~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~~~~tii 178 (223)
T TIGR03740 103 -SRIDEVLNIVDLTN--TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT-NGLDPIGIQELRELIRSFPEQGITVI 178 (223)
T ss_pred -HHHHHHHHHcCCcH--HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-cCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0000 0000000 012234457889998888888899999999999998 78888877665555544433245566
Q ss_pred EEeccCChHHHhhh
Q 009842 155 ITSATLDGEKVSKF 168 (524)
Q Consensus 155 ~~SATl~~~~~~~~ 168 (524)
+.|+- .+.+..+
T Consensus 179 i~sH~--~~~~~~~ 190 (223)
T TIGR03740 179 LSSHI--LSEVQQL 190 (223)
T ss_pred EEcCC--HHHHHHh
Confidence 65554 3334444
No 234
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.18 E-value=2.1e-06 Score=81.47 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=81.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-------------------HHHHHHHHHHH---HhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-------------------AAVSVARRVAQ---ELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-------------------la~~~~~~~~~---~~~ 74 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+... ....+.+.+.. ..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 56899999999999999999999988765544432221111000 00001111100 000
Q ss_pred Cccc---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.... ..+.. ..... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~ 180 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT-VGLDPASRAAIVAHVRALCR 180 (236)
T ss_pred CCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHH
Confidence 0000 00000 00000 0012344558899999999888899999999999998 78888877766555544332
Q ss_pred -cCcEEEEEeccCC
Q 009842 149 -SKLKILITSATLD 161 (524)
Q Consensus 149 -~~~~ii~~SATl~ 161 (524)
.+..+|+.|+.++
T Consensus 181 ~~~~tiii~sH~~~ 194 (236)
T TIGR03864 181 DQGLSVLWATHLVD 194 (236)
T ss_pred hCCCEEEEEecChh
Confidence 2566777776653
No 235
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=1.7e-05 Score=74.41 Aligned_cols=141 Identities=23% Similarity=0.294 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-------------EEcccc-hhHH-HHHHHHHH---HHhCCccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-------------GVTQPR-RVAA-VSVARRVA---QELGVRLG 78 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i-------------~~~~P~-r~la-~~~~~~~~---~~~~~~~~ 78 (524)
+.+|+.+.|.||+||||||++..++....+..|... .++... .... ..+.+.+. ...+....
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHH
Confidence 568999999999999999999999887654433221 111110 0000 01111111 00010000
Q ss_pred ---ceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCc
Q 009842 79 ---EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKL 151 (524)
Q Consensus 79 ---~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~ 151 (524)
..+. ....... ..+..+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+..... .+.
T Consensus 107 ~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~~~~~~ 183 (220)
T cd03293 107 EARERAEELLELVGLSG--FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF-SALDALTREQLQEELLDIWRETGK 183 (220)
T ss_pred HHHHHHHHHHHHcCChh--hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHHHHcCC
Confidence 0000 0000000 012234458899999999888899999999999998 78888877665555544322 245
Q ss_pred EEEEEeccC
Q 009842 152 KILITSATL 160 (524)
Q Consensus 152 ~ii~~SATl 160 (524)
.+|+.|+-+
T Consensus 184 tiii~sH~~ 192 (220)
T cd03293 184 TVLLVTHDI 192 (220)
T ss_pred EEEEEecCH
Confidence 666666654
No 236
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=3.4e-06 Score=80.34 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=47.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 141 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 141 RADQLSGGQQQRVAIARALMQQPKLILADEPV-ASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34457889999988888889999999999998 788888776655555544321 45666666654
No 237
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.16 E-value=6.1e-06 Score=76.92 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=77.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-EEcccc----------hhHHHHHHHHHHHHhCCcccceEeEEe
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQPR----------RVAAVSVARRVAQELGVRLGEEVGYAI 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i-~~~~P~----------r~la~~~~~~~~~~~~~~~~~~vg~~~ 85 (524)
+.+|+.+.+.||+||||||++..++....+..|... +..... .....+.........+...........
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~ 89 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCY 89 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 578999999999999999999999887666555433 211100 000111111111111110000000000
Q ss_pred eccc-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 86 RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 86 ~~~~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.... ....+..+.-++.|+..+..+....+.+.+++++||+- ..++......+...+.+... +..+|+.|+-+
T Consensus 90 ~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~-~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~ 163 (213)
T PRK15177 90 QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL-YTGDNATQLRMQAALACQLQ-QKGLIVLTHNP 163 (213)
T ss_pred HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHhh-CCcEEEEECCH
Confidence 0000 00112345557899999988888889999999999976 45666665554444443333 33455554443
No 238
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.16 E-value=3.5e-06 Score=79.75 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-----hHH----------------HHHHHHHHH---H
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAA----------------VSVARRVAQ---E 72 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-----~la----------------~~~~~~~~~---~ 72 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.. ... ..+.+.+.- .
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 5689999999999999999999998876554443222111110 000 001111110 0
Q ss_pred hCCcccc---eEeEEe-ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 73 LGVRLGE---EVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 73 ~~~~~~~---~vg~~~-~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.+..... .+.... .+.-....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~ 181 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF-AGVDPIAVQDIQKIIKILKD 181 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000000 000000 000000012334457889998888888899999999999998 78888876665554443333
Q ss_pred cCcEEEEEeccC
Q 009842 149 SKLKILITSATL 160 (524)
Q Consensus 149 ~~~~ii~~SATl 160 (524)
.+..+|+.|+.+
T Consensus 182 ~~~tii~~sH~~ 193 (232)
T cd03218 182 RGIGVLITDHNV 193 (232)
T ss_pred CCCEEEEEeCCH
Confidence 245667766654
No 239
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.16 E-value=2.2e-06 Score=80.57 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=79.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHH-HH---HHHhCC----cccceE------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVAR-RV---AQELGV----RLGEEV------ 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~-~~---~~~~~~----~~~~~v------ 81 (524)
+.+|+.+.|+||+||||||++..+.....+..|...+-..+... ...+..+ .+ .+.... .+...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 102 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYA 102 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhh
Confidence 56899999999999999999998887765544433222211100 0000000 00 000000 000000
Q ss_pred -eEE---------ee-ccc-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 82 -GYA---------IR-FED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 82 -g~~---------~~-~~~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
+.. .. +.. ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+......
T Consensus 103 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~ 181 (222)
T cd03224 103 RRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIRELRDE 181 (222)
T ss_pred cCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHC
Confidence 000 00 000 00012334457888888888888889999999999998 788888766655555444333
Q ss_pred CcEEEEEeccC
Q 009842 150 KLKILITSATL 160 (524)
Q Consensus 150 ~~~ii~~SATl 160 (524)
+..+|+.|+.+
T Consensus 182 ~~tiii~sH~~ 192 (222)
T cd03224 182 GVTILLVEQNA 192 (222)
T ss_pred CCEEEEEeCCH
Confidence 56677766654
No 240
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.16 E-value=3.5e-06 Score=80.41 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=46.5
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 142 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 142 RADQLSGGQQQRVAIARALAQQPDLILADEPI-ASLDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34457889999998888899999999999998 788887766655544443321 45667766654
No 241
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.7e-05 Score=81.48 Aligned_cols=142 Identities=22% Similarity=0.259 Sum_probs=87.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHH-HHHHHHhCCcc---cceEeEEeec----
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVA-RRVAQELGVRL---GEEVGYAIRF---- 87 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~-~~~~~~~~~~~---~~~vg~~~~~---- 87 (524)
.+..|+.+.++|++||||||++..+++......|...+-..|.+.+..+-. +.++ ..+... ..++..++.+
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHHHHhhccCCc
Confidence 467899999999999999999999999888776766666666555543221 2111 000000 0000000000
Q ss_pred ------------------ccc-cCcccceee----cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 88 ------------------EDR-TSERTLIKY----LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 88 ------------------~~~-~~~~~~i~~----~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
-.. ..-++.|-- .+.|..+|....+..+++.+++++||+- .++|.+.-..++..+.
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT-A~LD~etE~~i~~~l~ 500 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT-AHLDAETEQIILQALQ 500 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc-cCCCHhHHHHHHHHHH
Confidence 000 000112222 6899999999999999999999999976 5677776655555555
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
+... +..+++.|+-+
T Consensus 501 ~l~~-~ktvl~itHrl 515 (559)
T COG4988 501 ELAK-QKTVLVITHRL 515 (559)
T ss_pred HHHh-CCeEEEEEcCh
Confidence 5554 55566666554
No 242
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=6.9e-06 Score=79.96 Aligned_cols=144 Identities=22% Similarity=0.290 Sum_probs=84.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHHH---H-----HhCCcccceEeEEee-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---Q-----ELGVRLGEEVGYAIR- 86 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~~---~-----~~~~~~~~~vg~~~~- 86 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..+... ...+..+.++ + ..+..+...+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN 109 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh
Confidence 56899999999999999999999988776655544332222110 0001111110 0 000011111100000
Q ss_pred --cc---------------c-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 87 --FE---------------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 87 --~~---------------~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.. . ....+..+.-.+.|...+..+....+.+.+++|+||+- ..+|......+++.+.....
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 110 KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT-SMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHH
Confidence 00 0 00012334557899999999988899999999999998 78888877666555554433
Q ss_pred c-CcEEEEEeccCC
Q 009842 149 S-KLKILITSATLD 161 (524)
Q Consensus 149 ~-~~~ii~~SATl~ 161 (524)
. +..+|+.|+-++
T Consensus 189 ~~g~tilivtH~~~ 202 (279)
T PRK13650 189 DYQMTVISITHDLD 202 (279)
T ss_pred hcCCEEEEEecCHH
Confidence 2 567777777654
No 243
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.15 E-value=1.3e-05 Score=75.62 Aligned_cols=143 Identities=18% Similarity=0.203 Sum_probs=82.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHH--------------HHHHHHhCCcccc-e
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVA--------------RRVAQELGVRLGE-E 80 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~--------------~~~~~~~~~~~~~-~ 80 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+..... .... ..+.+.+...... .
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~ 116 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCS 116 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCC
Confidence 5689999999999999999999998876655443322222211000 0000 0111111100000 0
Q ss_pred ----------EeEE--e-ec--ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 81 ----------VGYA--I-RF--EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 81 ----------vg~~--~-~~--~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.+.. . .+ .-....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 117 FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALYD 195 (226)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 0000 0 00 0000112335557899999998888899999999999998 78888877765555554
Q ss_pred hcccCcEEEEEeccCC
Q 009842 146 LRASKLKILITSATLD 161 (524)
Q Consensus 146 ~~~~~~~ii~~SATl~ 161 (524)
... +..+|+.|..++
T Consensus 196 ~~~-~~tii~~sh~~~ 210 (226)
T cd03248 196 WPE-RRTVLVIAHRLS 210 (226)
T ss_pred HcC-CCEEEEEECCHH
Confidence 433 556777666543
No 244
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=5.1e-06 Score=80.63 Aligned_cols=144 Identities=18% Similarity=0.212 Sum_probs=81.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH--HHHHHHHHH---H-----HhCCcccceEeEE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AVSVARRVA---Q-----ELGVRLGEEVGYA-- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l--a~~~~~~~~---~-----~~~~~~~~~vg~~-- 84 (524)
+.+|+.+.|.||+||||||++..++.......|...+...+.... .....+.++ + ..+..+...+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 104 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE 104 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHH
Confidence 568999999999999999999999987665544333322221100 000000000 0 0000000000000
Q ss_pred ---ee-------cc------c-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 85 ---IR-------FE------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 85 ---~~-------~~------~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
.. .. . ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~ 183 (274)
T PRK13644 105 NLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT-SMLDPDSGIAVLERIKKLH 183 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 00 00 0 00012345568899999999988899999999999998 7888887666555554433
Q ss_pred ccCcEEEEEeccCC
Q 009842 148 ASKLKILITSATLD 161 (524)
Q Consensus 148 ~~~~~ii~~SATl~ 161 (524)
..+..+|+.|.-++
T Consensus 184 ~~g~til~~tH~~~ 197 (274)
T PRK13644 184 EKGKTIVYITHNLE 197 (274)
T ss_pred hCCCEEEEEecCHH
Confidence 33556666655543
No 245
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.15 E-value=2.9e-05 Score=74.76 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE-----Ec-ccchhH-HHHHHHHHHH---HhCCcccceE---eE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----VT-QPRRVA-AVSVARRVAQ---ELGVRLGEEV---GY 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~-----~~-~P~r~l-a~~~~~~~~~---~~~~~~~~~v---g~ 83 (524)
+.+|+.+.|.||+||||||++..+++...+..|...+ +. +..... ...+.+.+.. ..+....... ..
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK 126 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4589999999999999999999999877665443221 10 110000 0011111110 0011000000 00
Q ss_pred ---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 84 ---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 84 ---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
...... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......++..+......+..+|+.|+-+
T Consensus 127 ~l~~~~l~~--~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt-~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 127 IIEFSELGE--FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL-SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHcCCch--hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 000000 112345568999999998888899999999999998 68888766555554443332356677766654
No 246
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.15 E-value=4.9e-06 Score=77.71 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=79.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH---H-HHHHHHHH---HHhC----CcccceEeEE-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA---A-VSVARRVA---QELG----VRLGEEVGYA- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l---a-~~~~~~~~---~~~~----~~~~~~vg~~- 84 (524)
+.+|+.+.|+||+||||||++..+........|...+-..+.... . ....+.++ +... ..+...+.+.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 568999999999999999999999887655444332212111000 0 00000000 0000 0000000000
Q ss_pred --------------------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 85 --------------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 85 --------------------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
...+. ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~ 180 (214)
T cd03292 104 EVTGVPPREIRKRVPAALELVGLSH--KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT-GNLDPDTTWEIMNLLK 180 (214)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHH--HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHH
Confidence 00000 012233447888888888888889999999999998 7888887666555555
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.....+..+|+.|.-+
T Consensus 181 ~~~~~~~tiiivtH~~ 196 (214)
T cd03292 181 KINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHcCCEEEEEeCCH
Confidence 4333245566665543
No 247
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.14 E-value=2.7e-05 Score=73.04 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=80.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHH---HH-HHH---HHHhC----CcccceEeEE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVS---VA-RRV---AQELG----VRLGEEVGYA 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~---~~-~~~---~~~~~----~~~~~~vg~~ 84 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+.... ... .. +.+ .+... ..+.+.+.+.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence 568999999999999999999999887665544333222221100 000 00 000 00000 0000000000
Q ss_pred e---eccc----------------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 I---RFED----------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ~---~~~~----------------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. .... ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~ 186 (221)
T TIGR02211 108 LLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT-GNLDNNNAKIIFDLMLE 186 (221)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcCCHHHHHHHHHHHHH
Confidence 0 0000 00012234457889998988888899999999999998 78888877665555544
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
.... +..+|+.|+-+
T Consensus 187 ~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 187 LNRELNTSFLVVTHDL 202 (221)
T ss_pred HHHhcCCEEEEEeCCH
Confidence 3321 45677766654
No 248
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.14 E-value=2.4e-05 Score=72.99 Aligned_cols=141 Identities=22% Similarity=0.248 Sum_probs=81.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-----------------HHHHHHHHHHHhCCccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-----------------AVSVARRVAQELGVRLG 78 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-----------------a~~~~~~~~~~~~~~~~ 78 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+-..+.... ...+.+.+...... ..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~-~~ 99 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HK 99 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccc-cc
Confidence 4578999999999999999999998887655444332212111000 00111111100000 00
Q ss_pred ceEeE--------------EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 79 EEVGY--------------AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 79 ~~vg~--------------~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
...+. ..... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~ 176 (213)
T cd03235 100 GLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF-AGVDPKTQEDIYELLR 176 (213)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 00000 00000 0012234457889988888888889999999999998 7888887776655555
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.....+..+|+.|+-+
T Consensus 177 ~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 177 ELRREGMTILVVTHDL 192 (213)
T ss_pred HHHhcCCEEEEEeCCH
Confidence 4433355677766654
No 249
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.14 E-value=3.9e-06 Score=90.86 Aligned_cols=141 Identities=19% Similarity=0.182 Sum_probs=84.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcccceEeEEee-c-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYAIR-F- 87 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~~~~vg~~~~-~- 87 (524)
+++|+.+.|+||+||||||++..++... +..|...+-..+.+.... ++.+.++ ++ ++..+.+.+.+... .
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~ 451 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCC
Confidence 4689999999999999999999998887 554444333333222111 1111110 00 00000000000000 0
Q ss_pred -------------c---cccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 88 -------------E---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 88 -------------~---~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
+ ...+. ++.| .-.+.|..+|..+.+..+++.+++|+||+- ..+|.+.-..+.+.+.+
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 0 00000 1111 127899999999999999999999999998 78888887776666655
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+|+.|+-+
T Consensus 531 ~~~-~~TvIiItHrl 544 (588)
T PRK11174 531 ASR-RQTTLMVTHQL 544 (588)
T ss_pred HhC-CCEEEEEecCh
Confidence 444 67778877766
No 250
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.14 E-value=5.7e-05 Score=65.26 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.1
Q ss_pred HHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 009842 9 YEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHG 45 (524)
Q Consensus 9 ~~~~i~~~l~~--~~~~ii~~pTGsGKTt~l~~~l~~~~ 45 (524)
..+++...+.. +..+++.||+|+|||+++..+.....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556666655 78899999999999999888877654
No 251
>PRK10536 hypothetical protein; Provisional
Probab=98.14 E-value=9.9e-06 Score=75.92 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcccchh
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRV 60 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~-~~~~~~i~~~~P~r~ 60 (524)
-|....|...+.++.+++.+++.||+|||||+++..+..... ...-.+++++.|...
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 367788999999999999999999999999988877666432 222346777777643
No 252
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=4.1e-06 Score=82.95 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=48.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
...-.+.|...+..+....+.+.+++++||+- ..+|......++..+......+..+|+.|+.++
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt-sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPT-AGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 34457889999999998899999999999998 788888776665555443333566777776654
No 253
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=4.6e-06 Score=81.57 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=84.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-----hHHH--------------------HHHHHHH-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VAAV--------------------SVARRVA- 70 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-----~la~--------------------~~~~~~~- 70 (524)
+.+|+.+.|.||+||||||++..+........|...+-..|.. .... .+.+.+.
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~ 108 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHh
Confidence 5689999999999999999999999877655443333222210 0000 1111110
Q ss_pred --HHhCCcccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 71 --QELGVRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 71 --~~~~~~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
...+..... .+.. .+.... ...+..+.-.+.|+..+..+...++.+.+++++||+- ..+|......+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt-~gLD~~~~~~l~~~ 186 (288)
T PRK13643 109 GPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT-AGLDPKARIEMMQL 186 (288)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHH
Confidence 000000000 0000 000000 0012345568899999999888899999999999998 78888876665555
Q ss_pred HHhhcccCcEEEEEeccCChHHHhhh
Q 009842 143 LVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 143 i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
+......+..+|+.|+-+ +.+..+
T Consensus 187 l~~l~~~g~til~vtHd~--~~~~~~ 210 (288)
T PRK13643 187 FESIHQSGQTVVLVTHLM--DDVADY 210 (288)
T ss_pred HHHHHHCCCEEEEEecCH--HHHHHh
Confidence 443333355666666554 334444
No 254
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=9.9e-06 Score=76.78 Aligned_cols=142 Identities=22% Similarity=0.234 Sum_probs=81.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---HH---hCCcccceEeEE-----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QE---LGVRLGEEVGYA----- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~---~~---~~~~~~~~vg~~----- 84 (524)
+..|+.+.|.||+||||||++..+.....+..|...+-..+.... .....+.++ +. +...+.+.+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~ 104 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGAT 104 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCC
Confidence 568999999999999999999999887766555433222221100 000111110 00 000000000000
Q ss_pred e----------eccc---------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 I----------RFED---------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ~----------~~~~---------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. .... ....+..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 105 REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEAT-SALDTESERLVQAALER 183 (234)
T ss_pred HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 0 0000 00011234457889999988888899999999999998 78888887776555555
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
... +..+|+.|..+
T Consensus 184 ~~~-~~tii~~sh~~ 197 (234)
T cd03251 184 LMK-NRTTFVIAHRL 197 (234)
T ss_pred hcC-CCEEEEEecCH
Confidence 443 56677766655
No 255
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.13 E-value=3.7e-06 Score=79.85 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=47.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 140 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 140 PAGELSYGQQRRLEIARALATDPKLLLLDEPA-AGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 34457889999988888889999999999998 78888877665555544332355667766644
No 256
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.13 E-value=3.1e-06 Score=80.55 Aligned_cols=143 Identities=20% Similarity=0.246 Sum_probs=80.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh---HHHHHHHHH---HHHhC----CcccceEeEE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV---AAVSVARRV---AQELG----VRLGEEVGYA-- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~---la~~~~~~~---~~~~~----~~~~~~vg~~-- 84 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+... ......+.+ .+... ..+...+.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 56899999999999999999999988765544433322222110 000000110 00000 0000000000
Q ss_pred ----eecc----------c----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 85 ----IRFE----------D----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 85 ----~~~~----------~----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
.... . ....+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~ 182 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT-SALDPELRHEVLKVMQDL 182 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000 0 00012233447888888888888889999999999998 788888776655555443
Q ss_pred cccCcEEEEEeccC
Q 009842 147 RASKLKILITSATL 160 (524)
Q Consensus 147 ~~~~~~ii~~SATl 160 (524)
...+..+|+.|+-+
T Consensus 183 ~~~~~tiii~sH~~ 196 (240)
T PRK09493 183 AEEGMTMVIVTHEI 196 (240)
T ss_pred HHcCCEEEEEeCCH
Confidence 33245667766654
No 257
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=4.3e-06 Score=81.83 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=85.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-------------------------hhHHHHHHHHHHH
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-------------------------RVAAVSVARRVAQ 71 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-------------------------r~la~~~~~~~~~ 71 (524)
+..|+.+.|.||+||||||++..+........|...+-..+. ......+.+.+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~ 109 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICF 109 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHH
Confidence 568999999999999999999999987665544332222111 0000111111110
Q ss_pred ---HhCCcccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 72 ---ELGVRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 72 ---~~~~~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
..+..... .+-. .+.... ...+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt-~~LD~~~~~~l~~~ 187 (290)
T PRK13634 110 GPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT-AGLDPKGRKEMMEM 187 (290)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHH
Confidence 00000000 0000 000000 0013345568899999999888899999999999998 78888877665555
Q ss_pred HHhhccc-CcEEEEEeccCChHHHhhhc
Q 009842 143 LVNLRAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 143 i~~~~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
+...... +..+|+.|+-+ +.+..+.
T Consensus 188 L~~l~~~~g~tviiitHd~--~~~~~~~ 213 (290)
T PRK13634 188 FYKLHKEKGLTTVLVTHSM--EDAARYA 213 (290)
T ss_pred HHHHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 5443322 45666666544 3444443
No 258
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.13 E-value=5.6e-05 Score=77.53 Aligned_cols=126 Identities=23% Similarity=0.300 Sum_probs=74.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCc-EEEE-cccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCccc
Q 009842 19 QNPVVVVIGETGSGKSTQLSQILHRHG-YTKSG-IIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (524)
Q Consensus 19 ~~~~~ii~~pTGsGKTt~l~~~l~~~~-~~~~~-~i~~-~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 95 (524)
.+++++++||||+||||.+..++.... ...+. ..++ .-|.|..+.++.+..++.++..+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----------------
Confidence 467899999999999987777665443 22233 3333 445666666666666665553321
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh-hcccCcEEEEEeccCChHHHhh
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKILITSATLDGEKVSK 167 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~-~~~~~~~ii~~SATl~~~~~~~ 167 (524)
...++..+...+. .+.++++||||.+-....+.... ..+..++. ...+....+++|||.....+.+
T Consensus 283 --~~~~~~~l~~~l~---~~~~~DlVlIDt~G~~~~d~~~~-~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 283 --VVYDPKELAKALE---QLRDCDVILIDTAGRSQRDKRLI-EELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred --ccCCHHhHHHHHH---HhCCCCEEEEeCCCCCCCCHHHH-HHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 0123344444443 23468999999997333333333 33555555 2222456888999997665543
No 259
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.12 E-value=2.3e-06 Score=85.22 Aligned_cols=144 Identities=24% Similarity=0.260 Sum_probs=85.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HH----------------------HHHHHHHHHh
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV----------------------SVARRVAQEL 73 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~----------------------~~~~~~~~~~ 73 (524)
+.+|+.+.|+||+||||||++..+.....+..|...+-..+...+ .. .+.+.++-.+
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 568999999999999999999999887766554433322221110 00 0111111000
Q ss_pred ---CCc----------ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHH
Q 009842 74 ---GVR----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (524)
Q Consensus 74 ---~~~----------~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l 140 (524)
+.. .-..+| ... ..+....-.+.|+.++..+...+..+.+++++||+- ..+|......++
T Consensus 108 ~~~~~~~~~~~~~v~e~l~~vg----L~~--~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt-s~LD~~t~~~i~ 180 (343)
T TIGR02314 108 ELDNTPKDEIKRKVTELLALVG----LGD--KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTQSIL 180 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcC----Cch--hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHH
Confidence 000 000000 000 012233347889999999999999999999999998 788888766655
Q ss_pred HHHHhhccc-CcEEEEEeccCChHHHhhhc
Q 009842 141 KRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 141 ~~i~~~~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
..+...... +..+|+.|+-+ +.+.++.
T Consensus 181 ~lL~~l~~~~g~tiiliTH~~--~~v~~~~ 208 (343)
T TIGR02314 181 ELLKEINRRLGLTILLITHEM--DVVKRIC 208 (343)
T ss_pred HHHHHHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 555444332 56777776654 3444443
No 260
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.12 E-value=2.1e-05 Score=78.92 Aligned_cols=138 Identities=24% Similarity=0.294 Sum_probs=84.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HH-----------------------HHHHHHH--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV-----------------------SVARRVA-- 70 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~-----------------------~~~~~~~-- 70 (524)
+.+|+.++|.||+||||||++..+.....+..|...+-..+.... .. .+.+.+.
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~ 95 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG 95 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence 568999999999999999999999988776555433322221100 00 0111110
Q ss_pred -HHhCCc----------ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHH
Q 009842 71 -QELGVR----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (524)
Q Consensus 71 -~~~~~~----------~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~ 139 (524)
...+.. .-..+| .+. ..+....-.+.|+.++..+...+..+.+++++||+. ..+|......+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~vg----L~~--~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~-saLD~~~r~~l 168 (363)
T TIGR01186 96 PELLGWPEQERKEKALELLKLVG----LEE--YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF-SALDPLIRDSM 168 (363)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcC----Cch--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHH
Confidence 000000 000000 000 012223347899999999998999999999999998 78888877776
Q ss_pred HHHHHhhccc-CcEEEEEeccCC
Q 009842 140 VKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 140 l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
...+...... +..+|+.|+.++
T Consensus 169 ~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 169 QDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH
Confidence 6655544322 566788777664
No 261
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.12 E-value=8.6e-06 Score=75.99 Aligned_cols=142 Identities=22% Similarity=0.261 Sum_probs=81.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------H--HHHHHHHHHHHhCCcc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------A--AVSVARRVAQELGVRL 77 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------l--a~~~~~~~~~~~~~~~ 77 (524)
.+..|+.+.|.||+||||||++..++.......|...+-..+... + ...+.+.+........
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 356899999999999999999999998776554432221111000 0 0011111110000000
Q ss_pred c------ceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 78 G------EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 78 ~------~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
. ..+. ....... ..+....-.+.|+..+..+....+.+.+++++||+. ..+|......+.+.+.....
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIAD--YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF-SALDPLLREEMLALVKQLCS 176 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHH--HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHH
Confidence 0 0000 0000000 012334457889999998888889999999999998 78888877766555554433
Q ss_pred c-CcEEEEEeccC
Q 009842 149 S-KLKILITSATL 160 (524)
Q Consensus 149 ~-~~~ii~~SATl 160 (524)
. +..+|+.|+.+
T Consensus 177 ~~~~tii~vsh~~ 189 (213)
T TIGR01277 177 ERQRTLLMVTHHL 189 (213)
T ss_pred hcCCEEEEEeCCH
Confidence 2 45667766654
No 262
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.11 E-value=1.2e-06 Score=85.68 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=71.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE------cccchhHHHHHHHHHHHHhCCcccceEeEEeeccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~------~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~ 89 (524)
.+.+|+.+++.||+||||||++..+.+....++|...+. +.|.+=-..-+++..+-.-...+...++|..+...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 467899999999999999999999999877665443221 12210000000000000000111111111111100
Q ss_pred cc-------------------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 90 RT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 90 ~~-------------------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
.. --+....-.+.|.-+|..+.+....+.+++.+||.= ..+|......+-..+.
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl-SnLDa~lR~~mr~ei~ 177 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL-SNLDAKLRVLMRSEIK 177 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch-hHhhHHHHHHHHHHHH
Confidence 00 001223347889999999999999999999999986 5577666555433333
No 263
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.11 E-value=2.8e-05 Score=74.61 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=78.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-------------HH--HHHHHHHHHHhCC------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-------------AA--VSVARRVAQELGV------ 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-------------la--~~~~~~~~~~~~~------ 75 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+... +. ..+.+.+.-....
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~ 114 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA 114 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHH
Confidence 56899999999999999999999988766544432221111100 00 0111111000000
Q ss_pred -cccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEE
Q 009842 76 -RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (524)
Q Consensus 76 -~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~i 153 (524)
.....+| ... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... .+..+
T Consensus 115 ~~~l~~~g----l~~--~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 115 LQALAAVG----LAD--RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL-GALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred HHHHHHcC----Chh--HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 0000000 000 012334457889998888888889999999999998 78888876665554444322 24567
Q ss_pred EEEeccC
Q 009842 154 LITSATL 160 (524)
Q Consensus 154 i~~SATl 160 (524)
|+.|+-+
T Consensus 188 iivsHd~ 194 (257)
T PRK11247 188 LLVTHDV 194 (257)
T ss_pred EEEeCCH
Confidence 7766654
No 264
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=7e-06 Score=77.56 Aligned_cols=147 Identities=17% Similarity=0.201 Sum_probs=89.3
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH--HHHHHHH-------HHHhCCcccceEe
Q 009842 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA--VSVARRV-------AQELGVRLGEEVG 82 (524)
Q Consensus 12 ~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la--~~~~~~~-------~~~~~~~~~~~vg 82 (524)
+|--.|.+|+.+.+.||+||||||++..+.+...++.|.+.+-..+..-.. ....+++ +......+.+.+.
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIA 99 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIA 99 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhh
Confidence 344457799999999999999999999999988777665555444211111 1112222 2222334444444
Q ss_pred EEeecccccCc----c-----------------cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHH
Q 009842 83 YAIRFEDRTSE----R-----------------TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (524)
Q Consensus 83 ~~~~~~~~~~~----~-----------------~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~ 141 (524)
+..+....... + ..-.-.+.|.-++..+.+...-...++.+||.- ..+|.....+ ++
T Consensus 100 FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf-~ALDa~vr~~-lr 177 (345)
T COG1118 100 FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKE-LR 177 (345)
T ss_pred hcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc-hhhhHHHHHH-HH
Confidence 44322211110 0 111126788888888888889999999999987 6777776555 33
Q ss_pred HHHhhc-c-cCcEEEEEeccC
Q 009842 142 RLVNLR-A-SKLKILITSATL 160 (524)
Q Consensus 142 ~i~~~~-~-~~~~ii~~SATl 160 (524)
+++... . .+...++.|+-.
T Consensus 178 ~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 178 RWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHHhhCceEEEEeCCH
Confidence 333222 1 156777776643
No 265
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.11 E-value=4.4e-06 Score=84.85 Aligned_cols=143 Identities=22% Similarity=0.275 Sum_probs=82.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHHH---HHhC----CcccceE--e---E
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---QELG----VRLGEEV--G---Y 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~~---~~~~----~~~~~~v--g---~ 83 (524)
+.+|+.+.+.||+||||||++..+.....+..|...+...+... ...+..++++ +... ..+.+.+ | |
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 56899999999999999999999988776655544333322111 1111222110 1100 0110000 0 0
Q ss_pred Eeecc--c-----c-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 84 AIRFE--D-----R-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 84 ~~~~~--~-----~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
...+. . . ...+..+.-.+.|+.++..+...++++.+++++||.- ..+|......++..+..
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt-sgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT-ASLDINHQVRTLELVRR 184 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00000 0 0 0012334457899999999999999999999999988 67888765554444443
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
....+..+|+.|+-+
T Consensus 185 l~~~g~TIIivsHdl 199 (402)
T PRK09536 185 LVDDGKTAVAAIHDL 199 (402)
T ss_pred HHhcCCEEEEEECCH
Confidence 332355666766654
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.11 E-value=8.2e-06 Score=75.76 Aligned_cols=143 Identities=17% Similarity=0.096 Sum_probs=82.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---HHh---CCcccceEeEEeecc-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QEL---GVRLGEEVGYAIRFE- 88 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~---~~~---~~~~~~~vg~~~~~~- 88 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+.... ..+..+.++ +.. ...+...+.+.....
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~ 110 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD 110 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCH
Confidence 568999999999999999999999887665545433322221100 000111110 000 000000000000000
Q ss_pred ----cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 89 ----DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 89 ----~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.....+....-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 111 ~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~~ 185 (207)
T cd03369 111 EEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREEFT-NSTILTIAHRLR 185 (207)
T ss_pred HHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 000012344567889998888888889999999999998 78888877665555544433 566777776543
No 267
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=5.3e-06 Score=78.37 Aligned_cols=142 Identities=19% Similarity=0.173 Sum_probs=80.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHH--------------HHHHHhCCcccce-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEE- 80 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~--------------~~~~~~~~~~~~~- 80 (524)
+..|+.+.|.||+||||||++..+........|...+-..+.... .....+ .+.+.........
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~ 105 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNAT 105 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCC
Confidence 568999999999999999999999887765544332211111000 000000 1111110000000
Q ss_pred ---EeE---Eeeccc---c------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 81 ---VGY---AIRFED---R------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 81 ---vg~---~~~~~~---~------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
+-. ....+. . ......+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...+..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 106 DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALEK 184 (229)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 000 000000 0 0001224558889999999888899999999999998 78888877665555544
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
.. .+..+|+.|+.+
T Consensus 185 ~~-~~~tii~~sh~~ 198 (229)
T cd03254 185 LM-KGRTSIIIAHRL 198 (229)
T ss_pred hc-CCCEEEEEecCH
Confidence 43 356677777654
No 268
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.10 E-value=1.6e-05 Score=75.10 Aligned_cols=143 Identities=22% Similarity=0.206 Sum_probs=79.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHH----HHHH---HHHhCC----cccceEeE-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSV----ARRV---AQELGV----RLGEEVGY- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~----~~~~---~~~~~~----~~~~~vg~- 83 (524)
+.+|+.+.|.||+||||||++..+........|...+...+.... ..+. .+.+ .+.... .+.+.+.+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 568999999999999999999999987665544333222221100 0000 0000 000000 00000000
Q ss_pred ----Eee--------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 84 ----AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 84 ----~~~--------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
... +.-....+..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 113 ALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT-GNLDRQTGDKIADLLFS 191 (228)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 000 00000012234457889988888888889999999999998 78888876665555544
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
.... +..+|+.|+-+
T Consensus 192 ~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 192 LNREHGTTLILVTHDL 207 (228)
T ss_pred HHHhcCCEEEEEecCH
Confidence 3322 45666666654
No 269
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=2.9e-05 Score=75.17 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=47.4
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-++.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 157 ~~~~LS~Gq~qrv~lAral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAF-SALDPLIRREMQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34457899999998888899999999999998 788888776665555444322 45666666654
No 270
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.10 E-value=0.00044 Score=70.20 Aligned_cols=232 Identities=16% Similarity=0.093 Sum_probs=146.0
Q ss_pred ccceeecchHHHHHHHHh------C-CCCCCCceEEEeCCCcCCC-ChHHHHHHHHHHHhhcc-----------------
Q 009842 94 RTLIKYLTDGVLLREILS------N-PDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRA----------------- 148 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~------~-~~l~~~~~iIiDE~H~~~~-~~~~~~~~l~~i~~~~~----------------- 148 (524)
+++|+++||=-|...+-. + ..|+.+.++|+|.+|-..+ +-+.+..+++.+ ...|
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~l-N~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHL-NLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHc
Confidence 589999999777655542 1 1799999999999994211 222333333322 2222
Q ss_pred ----cCcEEEEEeccCChHH---HhhhcCCC-Ceee----------cCCcccceeEEecCCCCcchH-------HHHHHH
Q 009842 149 ----SKLKILITSATLDGEK---VSKFFSNC-PTLN----------VPGKLYPVEILHSKERPTSYL-------ESALKT 203 (524)
Q Consensus 149 ----~~~~ii~~SATl~~~~---~~~~~~~~-~~~~----------i~~~~~~v~~~~~~~~~~~~~-------~~~~~~ 203 (524)
.-.|.|++|+..+++. +.....+. -.+. +..-..++...|...+..+.. .--.+.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 1258999999987763 33322220 0111 111122333333322221111 111122
Q ss_pred HHHHHh-cCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEEecCc
Q 009842 204 AIDIHV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (524)
Q Consensus 204 ~~~~~~-~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilvaT~i 282 (524)
++-... ....+.+|||+||.-+-..+-..|.+. ++....+|--.+..+-.++-..|..|+.+|++-|-=
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~----------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER 359 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE----------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTER 359 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc----------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhH
Confidence 333333 556789999999999999998888854 788888998889888888888999999999999963
Q ss_pred c--ccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCC----CCCCeEEEecCchhhhh
Q 009842 283 A--ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR----TRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 283 ~--e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR----~~~G~~~~l~~~~~~~~ 351 (524)
+ =+=..|-+|+.||-+|+|..+.|.+ ++....+.... ..++.|..||++-+...
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~p~fY~---------------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPENPQFYS---------------ELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCChhHHH---------------HHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 2 2345678899999999888766544 33333333322 25679999999877655
No 271
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.10 E-value=3.2e-05 Score=72.81 Aligned_cols=143 Identities=16% Similarity=0.083 Sum_probs=80.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-hhHH------------------HHHHHHHHH---HhC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAA------------------VSVARRVAQ---ELG 74 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-r~la------------------~~~~~~~~~---~~~ 74 (524)
+.+|+.+.|+||+||||||++..++.......|...+-..+. .... ..+.+.+.- ..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~ 109 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRN 109 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcC
Confidence 568999999999999999999999887655444322211110 0000 011111100 000
Q ss_pred Ccc-cceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-c
Q 009842 75 VRL-GEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-S 149 (524)
Q Consensus 75 ~~~-~~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~ 149 (524)
... ...+.. ...... ...+..+.-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+..... .
T Consensus 110 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~ 187 (225)
T PRK10247 110 QQPDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT-SALDESNKHNVNEIIHRYVREQ 187 (225)
T ss_pred CChHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhc
Confidence 000 000000 000000 0012345567889999998888899999999999997 78888776665554444322 1
Q ss_pred CcEEEEEeccCC
Q 009842 150 KLKILITSATLD 161 (524)
Q Consensus 150 ~~~ii~~SATl~ 161 (524)
+..+|+.|...+
T Consensus 188 ~~tvii~sh~~~ 199 (225)
T PRK10247 188 NIAVLWVTHDKD 199 (225)
T ss_pred CCEEEEEECChH
Confidence 456777776653
No 272
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.10 E-value=1e-05 Score=76.32 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=46.5
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 200 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPT-SALDPISTAKIEELIAELKK-EYTIVIVTHNM 200 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhh-CcEEEEEeccH
Confidence 558899999988888889999999999998 78888887776666655544 44555655543
No 273
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.10 E-value=1.6e-05 Score=75.61 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=81.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHH--------------HHHHHhCCcccceE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEEV 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~--------------~~~~~~~~~~~~~v 81 (524)
+..|+.+.|.||+||||||++..++.......|...+-..+.... .....+ .+.+..........
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~ 105 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDAT 105 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCC
Confidence 568999999999999999999999987765544333222221100 000000 11111110000000
Q ss_pred eEEe-------eccc---cc------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 82 GYAI-------RFED---RT------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 82 g~~~-------~~~~---~~------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.... .... .. .....+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 106 DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALDR 184 (238)
T ss_pred HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 0000 0000 00 011223457889998888888889999999999998 78888877765555554
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
.. .+..+|+.|.-+
T Consensus 185 ~~-~g~~vi~~sh~~ 198 (238)
T cd03249 185 AM-KGRTTIVIAHRL 198 (238)
T ss_pred hc-CCCEEEEEeCCH
Confidence 43 356666666544
No 274
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=1.1e-05 Score=76.52 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=47.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
+.-.+.|...+..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 135 ~~~LS~G~~~rl~la~aL~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~ 197 (236)
T cd03253 135 GLKLSGGEKQRVAIARAILKNPPILLLDEAT-SALDTHTEREIQAALRDVSK-GRTTIVIAHRLS 197 (236)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 4457889999998888899999999999998 78888877766655554443 556677666543
No 275
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=4.4e-05 Score=67.57 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=89.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE-----EcccchhHHHHHHHHHHHH----hCCcccceEeEEee
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----VTQPRRVAAVSVARRVAQE----LGVRLGEEVGYAIR 86 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~-----~~~P~r~la~~~~~~~~~~----~~~~~~~~vg~~~~ 86 (524)
.+.+|+.+.++||+|+||||++..+........|...+ ...|.+.+|..+. -+.++ ....+.+.++++--
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS-ILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS-ILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH-HHHhhchhhheeEHHHHhhcCCC
Confidence 46789999999999999999999888777776655333 2345555554332 11122 12334444443211
Q ss_pred ccc--ccCc-------------------ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH---HHHHHHH
Q 009842 87 FED--RTSE-------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKR 142 (524)
Q Consensus 87 ~~~--~~~~-------------------~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~---~~~~l~~ 142 (524)
..+ +... +.-+--.+.|..+|...+....++-++|.+||+- ..+|... .+..+++
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL-NNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL-NNLDMKHSVQIMKILRR 180 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc-cccchHHHHHHHHHHHH
Confidence 101 1110 1112236778888888877789999999999987 5676655 4444556
Q ss_pred HHhhcccCcEEEEEeccCChHHHhhhcCC
Q 009842 143 LVNLRASKLKILITSATLDGEKVSKFFSN 171 (524)
Q Consensus 143 i~~~~~~~~~ii~~SATl~~~~~~~~~~~ 171 (524)
+..... ..+++.=+-+| |+.++.+
T Consensus 181 la~el~--KtiviVlHDIN---fAS~YsD 204 (252)
T COG4604 181 LADELG--KTIVVVLHDIN---FASCYSD 204 (252)
T ss_pred HHHHhC--CeEEEEEeccc---HHHhhhh
Confidence 555553 44555556665 5555533
No 276
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-05 Score=70.36 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=74.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHH---HHHHhCCcccceEeEEeecccc---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR---VAQELGVRLGEEVGYAIRFEDR--- 90 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~---~~~~~~~~~~~~vg~~~~~~~~--- 90 (524)
+..|+.+.|.||+||||||++..+.....+..|..-+-..|......+.++. +....|.+...++-...+|...
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~ 104 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHG 104 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhC
Confidence 5689999999999999999999999888776565555446654444333222 2211122111111111111000
Q ss_pred -----------------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH
Q 009842 91 -----------------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (524)
Q Consensus 91 -----------------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~ 135 (524)
...+..+-..+.|+-.+..+.+-+++.-.+.|+||+- ..+|..-
T Consensus 105 ~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~-taLDk~g 165 (209)
T COG4133 105 SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF-TALDKEG 165 (209)
T ss_pred CCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc-cccCHHH
Confidence 0123445568899998888888899999999999987 5666544
No 277
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.09 E-value=1.3e-05 Score=75.30 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=79.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE------------cccchhHHHHHHHHHHHHhCCcccc---eE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------------TQPRRVAAVSVARRVAQELGVRLGE---EV 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~------------~~P~r~la~~~~~~~~~~~~~~~~~---~v 81 (524)
+..|+.+.|.||+||||||++..+........|...+- ..|.. .+.+.........+..... .+
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~ 123 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL-TGRENIYLNGRLLGLSRKEIDEKI 123 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC-cHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45899999999999999999999988765544432211 11110 0111110000101100000 00
Q ss_pred eE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEec
Q 009842 82 GY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (524)
Q Consensus 82 g~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SA 158 (524)
.. ...... ..+..+.-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.
T Consensus 124 ~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~-~gLD~~~~~~~~~~l~~~~~~~~tiii~sH 200 (224)
T cd03220 124 DEIIEFSELGD--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL-AVGDAAFQEKCQRRLRELLKQGKTVILVSH 200 (224)
T ss_pred HHHHHHcCChh--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 00 000000 012344557899998888888889999999999998 788887766655555443332456666655
Q ss_pred cC
Q 009842 159 TL 160 (524)
Q Consensus 159 Tl 160 (524)
-+
T Consensus 201 ~~ 202 (224)
T cd03220 201 DP 202 (224)
T ss_pred CH
Confidence 43
No 278
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.09 E-value=5e-06 Score=88.81 Aligned_cols=143 Identities=24% Similarity=0.236 Sum_probs=87.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccceEeEEe---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGYAI--- 85 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~vg~~~--- 85 (524)
.+.+|+.+.|+||+||||||++..++....+..|...+-..|.+... .+..+.++ ++ +...+.+.+.+..
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 423 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA 423 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC
Confidence 35689999999999999999999999888776665544444433221 11111110 00 0000000000000
Q ss_pred ------------ecc---cccCc--cc----ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 86 ------------RFE---DRTSE--RT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 86 ------------~~~---~~~~~--~~----~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
... ...+. ++ .-.-.+.|..+|....+..+++.+++|+||+- ..+|.+....+.+.+.
T Consensus 424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t-s~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT-AHLDAETEALVTEALR 502 (529)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHH
Confidence 000 00000 11 11237889999999999999999999999998 7888888777766666
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
...+ +..+|+.|+-+
T Consensus 503 ~~~~-~~t~i~itH~~ 517 (529)
T TIGR02857 503 ALAQ-GRTVLLVTHRL 517 (529)
T ss_pred HhcC-CCEEEEEecCH
Confidence 5544 67778877765
No 279
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=2.3e-06 Score=79.81 Aligned_cols=142 Identities=22% Similarity=0.235 Sum_probs=79.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc----------------chhHH--HHHHHHHH---HHhC
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP----------------RRVAA--VSVARRVA---QELG 74 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P----------------~r~la--~~~~~~~~---~~~~ 74 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+-..+ ...+. ..+.+.+. ...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 356899999999999999999999888765443322111110 00000 01111111 0000
Q ss_pred Ccccc---eEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 75 VRLGE---EVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 75 ~~~~~---~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
..... .+. ....... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 102 VPKAEIRARVRELLELVGLEG--LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL-SALDAKLREELREELKELQR 178 (213)
T ss_pred CCHHHHHHHHHHHHHHcCChh--hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 00000 000 0000000 012233457899999999888899999999999998 78888876665555544332
Q ss_pred c-CcEEEEEeccC
Q 009842 149 S-KLKILITSATL 160 (524)
Q Consensus 149 ~-~~~ii~~SATl 160 (524)
. +..+|+.|+-+
T Consensus 179 ~~~~tii~~sH~~ 191 (213)
T cd03259 179 ELGITTIYVTHDQ 191 (213)
T ss_pred HcCCEEEEEecCH
Confidence 1 45566665543
No 280
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.09 E-value=1.7e-05 Score=87.56 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=85.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-------------------HHHHHHH-------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVA------- 70 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-------------------~~~~~~~------- 70 (524)
+.+|+.+.|+|++||||||++..++....+..|...+-..|.+.... .+.+.+.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~ 567 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD 567 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCC
Confidence 56899999999999999999999988877766544443333322111 1111110
Q ss_pred --------HHhCCc--c-cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHH
Q 009842 71 --------QELGVR--L-GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (524)
Q Consensus 71 --------~~~~~~--~-~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~ 139 (524)
+..+.. + ...-|+.... .. .-.-.+.|..++..+.+..+++.+++|+||+- ..+|......+
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i----~e--~G~~LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i 640 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQI----GE--RGRSLSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERF 640 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCccccccee----cC--CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHH
Confidence 000000 0 0000111100 00 11237899999999999999999999999998 68888887776
Q ss_pred HHHHHhhcccCcEEEEEeccCC
Q 009842 140 VKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 140 l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.+.+.+..+ +..+|+.|+-++
T Consensus 641 ~~~l~~~~~-~~T~iiItHrl~ 661 (694)
T TIGR03375 641 KDRLKRWLA-GKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHHhC-CCEEEEEecCHH
Confidence 666665554 667777776653
No 281
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.09 E-value=5.6e-06 Score=89.60 Aligned_cols=142 Identities=22% Similarity=0.284 Sum_probs=85.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HHh---CCcccceEeEE-----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QEL---GVRLGEEVGYA----- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~~---~~~~~~~vg~~----- 84 (524)
+.+|+.++|+|++||||||++..++....+..|...+-..+..... .++.+.++ +.. ...+.+.+.+.
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~ 437 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT 437 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCC
Confidence 4689999999999999999999999887766554433333322211 11111110 000 00000000000
Q ss_pred ----------eeccc---ccCc--ccc----eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 ----------IRFED---RTSE--RTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ----------~~~~~---~~~~--~~~----i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
...++ ..+. ++. -.-.+.|..+|..+.+..+++.+++|+||+- ..+|.+....+.+.+..
T Consensus 438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 00000 0000 111 1237889999999999999999999999998 78898887777666665
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+|+.|+-+
T Consensus 517 ~~~-~~tvIiitHr~ 530 (588)
T PRK13657 517 LMK-GRTTFIIAHRL 530 (588)
T ss_pred Hhc-CCEEEEEEecH
Confidence 544 66777777654
No 282
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.09 E-value=1.3e-05 Score=78.93 Aligned_cols=133 Identities=13% Similarity=0.024 Sum_probs=69.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHh---cCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeec-----c
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHR---HGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-----E 88 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~---~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~-----~ 88 (524)
......++.-++|+|||..+..++.. ... .....++++.|. .+..+....+.+.........+-+.... .
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 34566788889999999544444431 111 112358888887 5567788888776632111222111111 1
Q ss_pred cccCcccceeecchHHHH--------HHHHhCCCCCCCceEEEeCCCcC-CCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 89 DRTSERTLIKYLTDGVLL--------REILSNPDLSPYSVIILDEAHER-SLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 89 ~~~~~~~~i~~~T~g~l~--------~~l~~~~~l~~~~~iIiDE~H~~-~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
.......+++++|.+.+. ..+.. .++++||+||+|.. ...+... +.+.. .. ....+++|||
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~----~~l~~-l~-~~~~~lLSgT 171 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRY----KALRK-LR-ARYRWLLSGT 171 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHH----HHHHC-CC-ECEEEEE-SS
T ss_pred ccccccceeeecccccccccccccccccccc----ccceeEEEeccccccccccccc----ccccc-cc-cceEEeeccc
Confidence 222356789999999887 12221 34899999999952 2222222 22222 22 4567889999
Q ss_pred CC
Q 009842 160 LD 161 (524)
Q Consensus 160 l~ 161 (524)
+-
T Consensus 172 P~ 173 (299)
T PF00176_consen 172 PI 173 (299)
T ss_dssp -S
T ss_pred cc
Confidence 83
No 283
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.09 E-value=2.5e-06 Score=79.64 Aligned_cols=141 Identities=20% Similarity=0.208 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE----------------EEcccchhHH--HHHHHHHHH---HhCC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII----------------GVTQPRRVAA--VSVARRVAQ---ELGV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i----------------~~~~P~r~la--~~~~~~~~~---~~~~ 75 (524)
+.+|+.+.|.||+||||||++..+........|... .++.....+. ..+.+.+.. ..+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 102 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV 102 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC
Confidence 568999999999999999999999887654433211 1111110000 011111110 0000
Q ss_pred cccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 76 RLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 76 ~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
.... .+.. ....+ ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......
T Consensus 103 ~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 103 PKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL-SNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred CHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHH
Confidence 0000 0000 00000 0012334458899999988888889999999999998 788888777665555544321
Q ss_pred -CcEEEEEeccC
Q 009842 150 -KLKILITSATL 160 (524)
Q Consensus 150 -~~~ii~~SATl 160 (524)
+..+|+.|+-+
T Consensus 180 ~~~tvi~~sH~~ 191 (213)
T cd03301 180 LGTTTIYVTHDQ 191 (213)
T ss_pred cCCEEEEEeCCH
Confidence 45666666544
No 284
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=8e-06 Score=79.58 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=83.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH--HHHHHHHHH---H-----HhCCcccceEeEE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AVSVARRVA---Q-----ELGVRLGEEVGYA-- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l--a~~~~~~~~---~-----~~~~~~~~~vg~~-- 84 (524)
+.+|+.+.|+|++||||||++..+........|...+-..+.... .....+.++ + ..+..+...+.+.
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~ 112 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE 112 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHh
Confidence 468999999999999999999999887766555433322221100 000001000 0 0000011000000
Q ss_pred ---eec---cc-----------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 85 ---IRF---ED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 85 ---~~~---~~-----------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
... .. ....+..+.-.+.|+..+..+...++.+.+++|+||+- ..+|......+.+.+....
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~ 191 (280)
T PRK13633 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT-AMLDPSGRREVVNTIKELN 191 (280)
T ss_pred hcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH
Confidence 000 00 00012345567899999998888899999999999998 7888888776555554433
Q ss_pred c-cCcEEEEEeccCC
Q 009842 148 A-SKLKILITSATLD 161 (524)
Q Consensus 148 ~-~~~~ii~~SATl~ 161 (524)
. .+..+|+.|+.++
T Consensus 192 ~~~g~tillvtH~~~ 206 (280)
T PRK13633 192 KKYGITIILITHYME 206 (280)
T ss_pred HhcCCEEEEEecChH
Confidence 2 2566777776654
No 285
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=8.2e-06 Score=79.57 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=82.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC--cEEEE-cccchh-HHHHHHHHHH--------HHhCCcccceEeEE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS--GIIGV-TQPRRV-AAVSVARRVA--------QELGVRLGEEVGYA 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~--~~i~~-~~P~r~-la~~~~~~~~--------~~~~~~~~~~vg~~ 84 (524)
+..|+.+.|+||+||||||++..++.......+ +.+.+ ..+... ........++ ......+.+.+.+.
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~ 109 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG 109 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhh
Confidence 568999999999999999999999987755442 33322 211100 0000001100 00001111111100
Q ss_pred eec-------------------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 IRF-------------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ~~~-------------------~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
... .-....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt-~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 110 LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST-SMLDPAGKEQILKLIRK 188 (282)
T ss_pred HHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 000 0000013345568899999998888899999999999998 78888876665555544
Q ss_pred hccc-CcEEEEEeccCC
Q 009842 146 LRAS-KLKILITSATLD 161 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl~ 161 (524)
.... +..+|+.|.-++
T Consensus 189 l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 189 LKKKNNLTVISITHDID 205 (282)
T ss_pred HHHhcCCEEEEEecCHH
Confidence 3322 467777776654
No 286
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.08 E-value=3.1e-05 Score=71.68 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=81.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EEEcccch-hHHHHHHHHHH--------------HHhCCc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRR-VAAVSVARRVA--------------QELGVR 76 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~-----i~~~~P~r-~la~~~~~~~~--------------~~~~~~ 76 (524)
+.+|+.+.|.||+||||||++..++.......|.. +.++.... .....+.+.+. +..+.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l- 106 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL- 106 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCc-
Confidence 56899999999999999999999988776655532 22221111 11111111110 00000
Q ss_pred ccceEeEEe-ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCcEEE
Q 009842 77 LGEEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKIL 154 (524)
Q Consensus 77 ~~~~vg~~~-~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~-~~~~~ii 154 (524)
...+.... ..+.. ......-.+.|+..+..+....+.+.+++++||+- ..+|.+....++..++... ..+..+|
T Consensus 107 -~~~~~~~~~~~~~~--~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~ll~~~~~~~~tvi 182 (204)
T cd03250 107 -EPDLEILPDGDLTE--IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL-SAVDAHVGRHIFENCILGLLLNNKTRI 182 (204)
T ss_pred -HHHHHhccCcccce--ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHhccCCCEEE
Confidence 00000000 00000 01123447899999999988899999999999998 7888887766655444322 2245667
Q ss_pred EEeccC
Q 009842 155 ITSATL 160 (524)
Q Consensus 155 ~~SATl 160 (524)
+.|+.+
T Consensus 183 ~~sh~~ 188 (204)
T cd03250 183 LVTHQL 188 (204)
T ss_pred EEeCCH
Confidence 766664
No 287
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.08 E-value=8.5e-06 Score=74.75 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhc-cC-CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEE
Q 009842 7 LQYEETIVETVE-QN-PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 7 ~~~~~~i~~~l~-~~-~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~ 84 (524)
...|.+.+..+. ++ +..+|.|+.|+||||.+..+...... .+..++++.|+..++..+.+.. +.... ++.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~apT~~Aa~~L~~~~----~~~a~-Ti~-- 74 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGLAPTNKAAKELREKT----GIEAQ-TIH-- 74 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEEESSHHHHHHHHHHH----TS-EE-EHH--
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEECCcHHHHHHHHHhh----Ccchh-hHH--
Confidence 455677777764 33 47889999999999877765543332 3578899999988887765542 21110 000
Q ss_pred eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 85 IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 85 ~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
++...... -..-+ .+.+.+.++|||||+- +++...+..+++.+.. .+.++|++-=+
T Consensus 75 -~~l~~~~~---~~~~~----------~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~---~~~klilvGD~ 130 (196)
T PF13604_consen 75 -SFLYRIPN---GDDEG----------RPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK---SGAKLILVGDP 130 (196)
T ss_dssp -HHTTEECC---EECCS----------SCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T----T-EEEEEE-T
T ss_pred -HHHhcCCc---ccccc----------cccCCcccEEEEeccc--ccCHHHHHHHHHHHHh---cCCEEEEECCc
Confidence 00000000 00000 0015667899999997 4565555554443322 26788887543
No 288
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=9.6e-06 Score=75.55 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=80.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------H--HHHHHHHHHHHhCCcc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------A--AVSVARRVAQELGVRL 77 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------l--a~~~~~~~~~~~~~~~ 77 (524)
.+.+|+.+.|.||+||||||++..++.......|...+-..+... + ...+.+.+.- ....
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~--~~~~ 97 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL--GLSP 97 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc--cccc
Confidence 457899999999999999999999988765544432221111100 0 0011111100 0000
Q ss_pred cceEeEEeecccc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 78 GEEVGYAIRFEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 78 ~~~vg~~~~~~~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
..+.....+.. ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...
T Consensus 98 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 98 --GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF-AALDPALRAEMLDLVLDL 174 (211)
T ss_pred --ccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHH
Confidence 00000000000 0012334457889998888888889999999999998 788888776655555543
Q ss_pred ccc-CcEEEEEeccC
Q 009842 147 RAS-KLKILITSATL 160 (524)
Q Consensus 147 ~~~-~~~ii~~SATl 160 (524)
... +..+|+.|+-+
T Consensus 175 ~~~~~~tii~~sH~~ 189 (211)
T cd03298 175 HAETKMTVLMVTHQP 189 (211)
T ss_pred HHhcCCEEEEEecCH
Confidence 321 45666665544
No 289
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.07 E-value=4.8e-06 Score=78.72 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHH-HHHH---HHHhCC----cccceE------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSV-ARRV---AQELGV----RLGEEV------ 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~-~~~~---~~~~~~----~~~~~v------ 81 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.... ..+. .+.+ .+.... .+...+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAA 102 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHh
Confidence 568999999999999999999998887665544333222111000 0000 0000 000000 000000
Q ss_pred -eEE--------eeccc--ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-
Q 009842 82 -GYA--------IRFED--RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (524)
Q Consensus 82 -g~~--------~~~~~--~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~- 149 (524)
+.. ..... ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......
T Consensus 103 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~ 181 (230)
T TIGR03410 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT-EGIQPSIIKDIGRVIRRLRAEG 181 (230)
T ss_pred cCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHcC
Confidence 000 00000 00012334447888888888888889999999999998 788888877765555544332
Q ss_pred CcEEEEEeccC
Q 009842 150 KLKILITSATL 160 (524)
Q Consensus 150 ~~~ii~~SATl 160 (524)
+..+|+.|+.+
T Consensus 182 ~~tii~~sH~~ 192 (230)
T TIGR03410 182 GMAILLVEQYL 192 (230)
T ss_pred CcEEEEEeCCH
Confidence 45666766654
No 290
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=5e-06 Score=83.27 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=80.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HH----------------------HHHHHHH---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV----------------------SVARRVA--- 70 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~----------------------~~~~~~~--- 70 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.... .. .+.+.+.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 568999999999999999999999887765544333322221100 00 0111110
Q ss_pred HHhCCccc---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 71 QELGVRLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 71 ~~~~~~~~---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
...+.... ..+.. .+.... ..+..+.-.+.|+..+..+...++.+.+++++||+- ..+|......+++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt-s~LD~~~~~~l~~~L~ 184 (343)
T PRK11153 108 ELAGTPKAEIKARVTELLELVGLSD--KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTRSILELLK 184 (343)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 00000000 00000 000000 012233447889999998888899999999999998 7888887666555554
Q ss_pred hhccc-CcEEEEEeccC
Q 009842 145 NLRAS-KLKILITSATL 160 (524)
Q Consensus 145 ~~~~~-~~~ii~~SATl 160 (524)
..... +..+|+.|+-+
T Consensus 185 ~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 185 DINRELGLTIVLITHEM 201 (343)
T ss_pred HHHHhcCCEEEEEeCCH
Confidence 43322 45677766654
No 291
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.1e-05 Score=81.82 Aligned_cols=142 Identities=21% Similarity=0.216 Sum_probs=91.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHH-HHHHH--------------HHHhCCccc--
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRV--------------AQELGVRLG-- 78 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~-~~~~~--------------~~~~~~~~~-- 78 (524)
.+++|+.+.|.|+|||||||++..+.....+++|...+-..|.+.+-.+ +.+.+ .+.+-....
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 3569999999999999999999999887777777766666554444332 11111 111100000
Q ss_pred ---------ceEeEEeeccc-------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 79 ---------EEVGYAIRFED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 79 ---------~~vg~~~~~~~-------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
..+|-....++ ...... .=.+.|...|+.+.+..+++..++++||+-| ++|...-..++..
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G--~~LSGGE~rRLAlAR~LL~dapl~lLDEPTe-gLD~~TE~~vL~l 516 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGG--RRLSGGERRRLALARALLHDAPLWLLDEPTE-GLDPITERQVLAL 516 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhChhhhhchhccCC--CcCCchHHHHHHHHHHHHcCCCeEEecCCcc-cCChhhHHHHHHH
Confidence 01110000000 000000 0157788888888888999999999999994 8888877787887
Q ss_pred HHhhcccCcEEEEEeccCC
Q 009842 143 LVNLRASKLKILITSATLD 161 (524)
Q Consensus 143 i~~~~~~~~~ii~~SATl~ 161 (524)
+..... +..+++.|+-+-
T Consensus 517 l~~~~~-~kTll~vTHrL~ 534 (573)
T COG4987 517 LFEHAE-GKTLLMVTHRLR 534 (573)
T ss_pred HHHHhc-CCeEEEEecccc
Confidence 777765 788888888773
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=98.07 E-value=5.3e-05 Score=74.86 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-EEcc-cchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccce
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i-~~~~-P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 97 (524)
...++++|++|+||||.+..+...... .+..+ ++.. +.|..+.++.+..++.+|..+.. + ....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~---- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA---- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC----
Confidence 357899999999999877766654433 23344 3332 45666666666667777654321 0 0000
Q ss_pred eecchHH-HHHHHHhCCCCCCCceEEEeCCCcCCC-ChHHHHHHHHHHHhhcccCcEEEEEeccCChH
Q 009842 98 KYLTDGV-LLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (524)
Q Consensus 98 ~~~T~g~-l~~~l~~~~~l~~~~~iIiDE~H~~~~-~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~ 163 (524)
.|.. +.+.+. .....++++|+||.++ +.. +.+.+.+ ++.+.+...++..+++++||...+
T Consensus 206 ---dp~~v~~~ai~-~~~~~~~DvVLIDTaG-r~~~~~~lm~e-L~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 206 ---DPAAVAYDAIE-HAKARGIDVVLIDTAG-RMHTDANLMDE-LKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ---CHHHHHHHHHH-HHHhCCCCEEEEECCC-ccCCcHHHHHH-HHHHHHhhCCceEEEeeccccchh
Confidence 1111 111111 1123468899999999 554 4444444 666665554578889999988543
No 293
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.07 E-value=1.5e-05 Score=75.79 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=82.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHH--------------HHHHHhCCcccceE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR--------------RVAQELGVRLGEEV 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~--------------~~~~~~~~~~~~~v 81 (524)
+..|+.+.|.||+||||||++..++.......|...+-..+.... .....+ .+.+.+...... .
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~-~ 103 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG-M 103 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC-C
Confidence 568999999999999999999999987765544332222221100 000000 000110000000 0
Q ss_pred eE-Ee-------eccc---c------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 82 GY-AI-------RFED---R------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 82 g~-~~-------~~~~---~------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
.. .. .... . ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEAT-SALDYESEHAIMRNMH 182 (237)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 00 00 0000 0 0011234568889999988888889999999999998 7888888777666665
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.... +..+|+.|+-+
T Consensus 183 ~~~~-~~tiii~sH~~ 197 (237)
T cd03252 183 DICA-GRTVIIIAHRL 197 (237)
T ss_pred HhcC-CCEEEEEeCCH
Confidence 5443 56667766654
No 294
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=1e-05 Score=78.57 Aligned_cols=150 Identities=16% Similarity=0.155 Sum_probs=84.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---H-----HhCCcccceEeEE---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---Q-----ELGVRLGEEVGYA--- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~---~-----~~~~~~~~~vg~~--- 84 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.... ..+..+.++ + .....+...+.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 107 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN 107 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHH
Confidence 568999999999999999999999887655444332222221000 000000000 0 0000000000000
Q ss_pred --ee-------c-------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 85 --IR-------F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 85 --~~-------~-------~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.. . .-....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+.....
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~ 186 (274)
T PRK13647 108 MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM-AYLDPRGQETLMEILDRLHN 186 (274)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHH
Confidence 00 0 0000012234457889999999888899999999999998 78888877665555554433
Q ss_pred cCcEEEEEeccCChHHHhhhc
Q 009842 149 SKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 149 ~~~~ii~~SATl~~~~~~~~~ 169 (524)
.+..+|+.|+-++ .+.++.
T Consensus 187 ~g~tili~tH~~~--~~~~~~ 205 (274)
T PRK13647 187 QGKTVIVATHDVD--LAAEWA 205 (274)
T ss_pred CCCEEEEEeCCHH--HHHHhC
Confidence 3566777666543 344443
No 295
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=5.7e-06 Score=79.53 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=82.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHH---HHHhCC----cccceEeEE----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELGV----RLGEEVGYA---- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~---~~~~~~----~~~~~vg~~---- 84 (524)
+.+|+.+.|.|++||||||++..+........|...+...+... ...+..+.+ .+.... .+.+.+.+.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~ 104 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPW 104 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchh
Confidence 56899999999999999999999988766554543332222111 000111111 011000 000000000
Q ss_pred -----e-ec--ccc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 -----I-RF--EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 -----~-~~--~~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. .. ... ...+..+.-.+.|+..+..+....+.+.+++++||+- .++|......+...+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 105 LSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT-TYLDINHQVELMRLMRE 183 (255)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHH
Confidence 0 00 000 0013345558899999999888899999999999998 78888876665555544
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
....+..+|+.|+-+
T Consensus 184 l~~~~~tiii~tH~~ 198 (255)
T PRK11231 184 LNTQGKTVVTVLHDL 198 (255)
T ss_pred HHHCCCEEEEEECCH
Confidence 332255667766654
No 296
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=4.1e-05 Score=72.50 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=47.2
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccCC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SATl~ 161 (524)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... .+..+|+.|+-++
T Consensus 143 ~~~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 143 PSELSGGERQRVAIARALVNNPRLVLADEPT-GNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3447888888888888889999999999998 78888877665555544332 2566777776553
No 297
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=1e-05 Score=77.18 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=80.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HH-------------------HHHHHHHH---HHh
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AA-------------------VSVARRVA---QEL 73 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la-------------------~~~~~~~~---~~~ 73 (524)
+..|+.+.|.||+||||||++..+........|...+-..+... .. ..+.+.+. ...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 56899999999999999999999988765544432221111100 00 01111110 000
Q ss_pred CCccc---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 74 GVRLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 74 ~~~~~---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
+.... ..+.. ..........+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+++.+....
T Consensus 104 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~ 182 (242)
T cd03295 104 KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF-GALDPITRDQLQEEFKRLQ 182 (242)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHH
Confidence 00000 00000 00000000012334457889999998888899999999999998 7888887666555555443
Q ss_pred cc-CcEEEEEeccC
Q 009842 148 AS-KLKILITSATL 160 (524)
Q Consensus 148 ~~-~~~ii~~SATl 160 (524)
.. +..+|+.|+-+
T Consensus 183 ~~~g~tvii~sH~~ 196 (242)
T cd03295 183 QELGKTIVFVTHDI 196 (242)
T ss_pred HHcCCEEEEEecCH
Confidence 32 45567766654
No 298
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=6.3e-06 Score=78.56 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=45.1
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+......+..+|+.|..+
T Consensus 139 ~~~LS~G~~qrv~laral~~~p~llilDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPT-AALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4457888888888888889999999999998 78888776665554443332245566655544
No 299
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=6.9e-06 Score=81.62 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=48.7
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
..-.+.|+.++..+....+.+.+++|+||+- ..+|......+++.+...... +..+|+.|+-++
T Consensus 152 p~~LSgGq~QRv~iArAL~~~P~lLilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPV-SALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred CccCCHHHHHHHHHHHHHHcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3457899999999999999999999999998 788888776666655544332 567777776553
No 300
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=87.16 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=87.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcccceEeEEe----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYAI---- 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~~~~vg~~~---- 85 (524)
+++|+.++|+|++||||||++..++....+..|...+-..|...... +..+.++ +. +...+.+.+.+..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~ 445 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQY 445 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCC
Confidence 46899999999999999999999999887766655544444332211 1111111 11 0000000000000
Q ss_pred ------------ecc---cccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 86 ------------RFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 86 ------------~~~---~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
..+ ...+. ++.+ .-.+.|..+|..+.+..+++.+++|+||+- ..+|.+....+.+.+.
T Consensus 446 ~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt-saLD~~t~~~i~~~l~ 524 (582)
T PRK11176 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALD 524 (582)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 000 00000 1111 237899999999999999999999999998 6788887777666665
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.... +..+|+.|+-+
T Consensus 525 ~~~~-~~tvI~VtHr~ 539 (582)
T PRK11176 525 ELQK-NRTSLVIAHRL 539 (582)
T ss_pred HHhC-CCEEEEEecch
Confidence 5443 67788888766
No 301
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=5.6e-05 Score=73.21 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=81.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-hHHHHHHHHHH---HH-----hCCcccceE------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-VAAVSVARRVA---QE-----LGVRLGEEV------ 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-~la~~~~~~~~---~~-----~~~~~~~~v------ 81 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+.. ....+..+.++ +. .+..+...+
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~ 111 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLEN 111 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHh
Confidence 4689999999999999999999998876554443222111110 00000000000 00 000000000
Q ss_pred -eEEe-----------e-cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 82 -GYAI-----------R-FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 82 -g~~~-----------~-~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
+... . +.-....+..+.-.+.|...+..+...++.+.+++|+||+- ..+|......+.+.+.....
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~ 190 (269)
T PRK13648 112 HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEAT-SMLDPDARQNLLDLVRKVKS 190 (269)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 0 00000012334558899999988888899999999999998 78888877665555544332
Q ss_pred c-CcEEEEEeccCC
Q 009842 149 S-KLKILITSATLD 161 (524)
Q Consensus 149 ~-~~~ii~~SATl~ 161 (524)
. +..+|+.|..++
T Consensus 191 ~~~~tiiivtH~~~ 204 (269)
T PRK13648 191 EHNITIISITHDLS 204 (269)
T ss_pred hcCCEEEEEecCch
Confidence 2 456777776653
No 302
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=1.6e-06 Score=86.97 Aligned_cols=137 Identities=20% Similarity=0.214 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc------h----------hH--HHHHHHHHHHHh---CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR------R----------VA--AVSVARRVAQEL---GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~------r----------~l--a~~~~~~~~~~~---~~ 75 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+. + .+ ...+.+.+.-.+ +.
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC
Confidence 568999999999999999999999987766544332211110 0 00 001111111000 00
Q ss_pred c----------ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 76 R----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 76 ~----------~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. ....+| ... ..+....-.+.|+.++..+...++.+.+++++||+- ..+|......+.+.+..
T Consensus 107 ~~~~~~~~~~~~l~~~g----L~~--~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 107 PKAEIEERVAEAARILE----LEP--LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL-SNLDAKLRVQMRLEIQR 179 (356)
T ss_pred CHHHHHHHHHHHHHHcC----Chh--HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 0 000000 000 012233457899999999999999999999999998 78888776655444443
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
...+ +..+|+.|+-+
T Consensus 180 l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 180 LHRRLKTTSLYVTHDQ 195 (356)
T ss_pred HHHhcCCEEEEEeCCH
Confidence 3322 56677776644
No 303
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.06 E-value=3.8e-05 Score=72.06 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=80.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHH--------------HHHHhCCcccceE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARR--------------VAQELGVRLGEEV 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~--------------~~~~~~~~~~~~v 81 (524)
+..|+.+.|+||+||||||++..+........|...+-..+... ......+. +.+..... ...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~--~~~ 104 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPF--GEY 104 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcC--CCC
Confidence 56899999999999999999999988766554433322211100 00000000 01110000 000
Q ss_pred eEE--------eeccccc---------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 82 GYA--------IRFEDRT---------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 82 g~~--------~~~~~~~---------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
... ....... .....+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 105 SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT-ASVDPETDALIQKTIR 183 (221)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 000 0000000 001234457888998888888899999999999998 7888887766555554
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.... +..+|+.|..+
T Consensus 184 ~~~~-~~tii~~sh~~ 198 (221)
T cd03244 184 EAFK-DCTVLTIAHRL 198 (221)
T ss_pred HhcC-CCEEEEEeCCH
Confidence 4433 55666666654
No 304
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=8.1e-06 Score=79.41 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=80.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-hhHHHHHHHHHH---HH-----hCCcccceEeE----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVA---QE-----LGVRLGEEVGY---- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-r~la~~~~~~~~---~~-----~~~~~~~~vg~---- 83 (524)
+.+|+.+.|.|++||||||++..+........|...+-..+. ........+.+. +. ++..+...+.+
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~ 106 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN 106 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence 568999999999999999999999987765544332211110 000001111110 00 00000000000
Q ss_pred -Eeec--------------ccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 84 -AIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 84 -~~~~--------------~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.... .-.......+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+.....
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt-~gLD~~~~~~l~~~l~~l~~ 185 (277)
T PRK13652 107 LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT-AGLDPQGVKELIDFLNDLPE 185 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 0000 0000113345568899999999888899999999999998 78887776665444443332
Q ss_pred c-CcEEEEEeccC
Q 009842 149 S-KLKILITSATL 160 (524)
Q Consensus 149 ~-~~~ii~~SATl 160 (524)
. +..+|+.|+-+
T Consensus 186 ~~g~tvli~tH~~ 198 (277)
T PRK13652 186 TYGMTVIFSTHQL 198 (277)
T ss_pred hcCCEEEEEecCH
Confidence 2 45566665544
No 305
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.05 E-value=1.2e-05 Score=76.75 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=48.2
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 139 ~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 202 (242)
T TIGR03411 139 RLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV-AGMTDEETEKTAELLKSLAG-KHSVVVVEHDM 202 (242)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH
Confidence 345557889999999888899999999999998 78888887776555554433 55666666654
No 306
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=7.8e-06 Score=76.16 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=45.8
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 127 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~ 189 (211)
T cd03264 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPT-AGLDPEERIRFRNLLSELGE-DRIVILSTHIV 189 (211)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence 44457889999998888899999999999998 78888776665555544443 45555555443
No 307
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.05 E-value=6.4e-06 Score=75.08 Aligned_cols=135 Identities=20% Similarity=0.215 Sum_probs=64.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 5 pi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~-~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
|....|...++++.+.+.+++.||.|||||.++......... ..-.+++++.|.... .+.+|...|..--.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~--------~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA--------GEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T--------T----SS-------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC--------ccccccCCCCHHHH
Confidence 677899999999999999999999999999666655543322 233478888885432 12223222221000
Q ss_pred Ee----ec----cc--------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 84 AI----RF----ED--------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 84 ~~----~~----~~--------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
.. .. +. ....+..|.+.+...+ ....+. -++||+|||+ ..-...++.++...
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt~~-~~~iIvDEaQ------N~t~~~~k~ilTR~ 143 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRTFD-NAFIIVDEAQ------NLTPEELKMILTRI 143 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT--B--SEEEEE-SGG------G--HHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcccc-ceEEEEeccc------CCCHHHHHHHHccc
Confidence 00 00 00 0001233444443222 111233 2899999999 33334466777777
Q ss_pred ccCcEEEEEecc
Q 009842 148 ASKLKILITSAT 159 (524)
Q Consensus 148 ~~~~~ii~~SAT 159 (524)
.++.++|++--.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 778899887543
No 308
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=7.7e-06 Score=79.30 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=80.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-----H----------------HHHHHHHHHHHh--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-----A----------------AVSVARRVAQEL-- 73 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-----l----------------a~~~~~~~~~~~-- 73 (524)
+.+|+.+.|+||+||||||++..++.......|...+-..+... . ...+.+.+.-..
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 111 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLEN 111 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHH
Confidence 56899999999999999999999988765544432221111100 0 001111110000
Q ss_pred -CCcccce---EeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 74 -GVRLGEE---VGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 74 -~~~~~~~---vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
+...... +-. ..... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+...
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 112 KKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST-SMLDPKGKREIKKIMVDL 188 (271)
T ss_pred cCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000000 000 00000 0012344557889999998888899999999999998 788887766655555443
Q ss_pred ccc-CcEEEEEeccCC
Q 009842 147 RAS-KLKILITSATLD 161 (524)
Q Consensus 147 ~~~-~~~ii~~SATl~ 161 (524)
... +..+|+.|..++
T Consensus 189 ~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 189 RKTRKKTLISITHDMD 204 (271)
T ss_pred HHhcCcEEEEEEechh
Confidence 332 356667666654
No 309
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.05 E-value=8.3e-06 Score=78.99 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=47.0
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 141 ~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 141 PSELSGGMARRAALARAIALEPDLIMFDEPF-VGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 4457889999988888889999999999998 788888776655555443322 46677777654
No 310
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.05 E-value=9.8e-06 Score=76.01 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=47.2
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 200 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPT-SAMDMNSEERLKERLRQLLG-DKTLIIITHRPS 200 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 457889999988888889999999999998 78888887776665555443 455666666553
No 311
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=4e-06 Score=79.31 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=81.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------HH--HHHHHHHH---HHhCC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------AA--VSVARRVA---QELGV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------la--~~~~~~~~---~~~~~ 75 (524)
+..|+.+.|.|++||||||++..+........|...+...+... .. ..+...+. ...+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~ 102 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKL 102 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCC
Confidence 56899999999999999999999988776554433221111100 00 00111110 00000
Q ss_pred ccc---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 76 RLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 76 ~~~---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
... ..+.. ....+. ..+....-.+.|...+..+....+.+.+++++||+. ..+|......+.+.+......
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~ 179 (232)
T cd03300 103 PKAEIKERVAEALDLVQLEG--YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKE 179 (232)
T ss_pred CHHHHHHHHHHHHHHcCCch--hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHH
Confidence 000 00000 000000 012334457889999988888899999999999999 788888877655555443322
Q ss_pred -CcEEEEEeccC
Q 009842 150 -KLKILITSATL 160 (524)
Q Consensus 150 -~~~ii~~SATl 160 (524)
+..+|+.|.-+
T Consensus 180 ~~~tiii~sh~~ 191 (232)
T cd03300 180 LGITFVFVTHDQ 191 (232)
T ss_pred cCCEEEEEeCCH
Confidence 46677766654
No 312
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.04 E-value=4.2e-05 Score=79.19 Aligned_cols=137 Identities=17% Similarity=0.113 Sum_probs=81.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-----hH--HHHHHHHHH---HHhCCcc---------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VA--AVSVARRVA---QELGVRL--------- 77 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-----~l--a~~~~~~~~---~~~~~~~--------- 77 (524)
+..|+.+.|.||+||||||++..+++...+..|...+-..+.. .. ...+.+.+. ...+...
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 5689999999999999999999999877655443322111100 00 001111110 0001000
Q ss_pred -cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009842 78 -GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 78 -~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (524)
...+| ... ..+..+.-.+.|+..+..+...++.+.+++|+||+- ..+|......+++.+......+..+|+.
T Consensus 127 lLe~lg----L~~--~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT-sgLD~~sr~~LlelL~el~~~G~TIIIV 199 (549)
T PRK13545 127 IIEFAD----IGK--FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL-SVGDQTFTKKCLDKMNEFKEQGKTIFFI 199 (549)
T ss_pred HHHHcC----Chh--HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 00001 000 112345568999999999888889999999999998 6788887666555554433335567776
Q ss_pred eccC
Q 009842 157 SATL 160 (524)
Q Consensus 157 SATl 160 (524)
|+-+
T Consensus 200 SHdl 203 (549)
T PRK13545 200 SHSL 203 (549)
T ss_pred ECCH
Confidence 6654
No 313
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=1e-05 Score=78.69 Aligned_cols=141 Identities=21% Similarity=0.293 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch---hHHHHHHHHHH---HH-----hCCcccceEeE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---VAAVSVARRVA---QE-----LGVRLGEEVGY-- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r---~la~~~~~~~~---~~-----~~~~~~~~vg~-- 83 (524)
+.+|+.+.|+||+||||||++..+........|...+-..+.. ....+..+.++ +. +...+...+.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~ 104 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP 104 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 5689999999999999999999998876554443322121110 00000000000 00 00000000000
Q ss_pred -----E--------------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 84 -----A--------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 84 -----~--------------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
. ..... ..+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 105 LNLGLSKEEVEKRVKEALKAVGMEG--FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT-SGLDPMGASQIMKLLY 181 (275)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCch--hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHH
Confidence 0 00000 012234457889999998888899999999999998 7888887766555555
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.....+..+|+.|.-+
T Consensus 182 ~l~~~~~til~vtH~~ 197 (275)
T PRK13639 182 DLNKEGITIIISTHDV 197 (275)
T ss_pred HHHHCCCEEEEEecCH
Confidence 4433356677766654
No 314
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.04 E-value=2.4e-06 Score=83.95 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=85.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE------cccchhHHHHHHHHHHHHhCCcccceEeEEeeccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~------~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~ 89 (524)
.+.+|+.+.+.||.||||||++..+.+...+++|.+.+- +.|.+=-..-+++..+-.-...+.+.++|..+...
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 467899999999999999999999999887766543332 22311111112221111222334444444443111
Q ss_pred ccC--------------------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-
Q 009842 90 RTS--------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (524)
Q Consensus 90 ~~~--------------------~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~- 148 (524)
... ......-.+.|..+|..+.+.+..++.++.+||.- ..+|......+-..+.....
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl-SaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL-SALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc-cchhHHHHHHHHHHHHHHHHh
Confidence 111 01122237889999999999999999999999987 67777775554333333222
Q ss_pred cCcEEEEEec
Q 009842 149 SKLKILITSA 158 (524)
Q Consensus 149 ~~~~ii~~SA 158 (524)
.+...|..|+
T Consensus 186 ~giT~i~VTH 195 (352)
T COG3842 186 LGITFVYVTH 195 (352)
T ss_pred cCCeEEEEEC
Confidence 1455666544
No 315
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=7.3e-06 Score=78.04 Aligned_cols=143 Identities=19% Similarity=0.242 Sum_probs=79.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHH-HH---HHHHhC----CcccceEeEE---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVA-RR---VAQELG----VRLGEEVGYA--- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~-~~---~~~~~~----~~~~~~vg~~--- 84 (524)
+..|+.+.|.||+||||||++..+........|...+-..+... ...... +. +.+... ..+.+.+.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 105 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQI 105 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhc
Confidence 56899999999999999999999998766554433332222100 000000 00 000000 0000000000
Q ss_pred ---eec-------c---c----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 85 ---IRF-------E---D----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 85 ---~~~-------~---~----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
... . . ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~ 184 (241)
T PRK10895 106 RDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF-AGVDPISVIDIKRIIEHLR 184 (241)
T ss_pred ccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHH
Confidence 000 0 0 00012334457889988888888889999999999998 7888877665544443333
Q ss_pred ccCcEEEEEeccC
Q 009842 148 ASKLKILITSATL 160 (524)
Q Consensus 148 ~~~~~ii~~SATl 160 (524)
..+..+|+.|+.+
T Consensus 185 ~~g~tiii~sH~~ 197 (241)
T PRK10895 185 DSGLGVLITDHNV 197 (241)
T ss_pred hcCCEEEEEEcCH
Confidence 3245667766654
No 316
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.04 E-value=1.4e-05 Score=75.41 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=81.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-------------H--HHHHHHHHHHHh-----CCc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-------------A--AVSVARRVAQEL-----GVR 76 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-------------l--a~~~~~~~~~~~-----~~~ 76 (524)
+.+|+.+.|+||+||||||++..+........|...+-..+... + ...+.+.+.-.. +..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 87 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLS 87 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCC
Confidence 56899999999999999999999988766544433221111000 0 001111111000 000
Q ss_pred ccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-
Q 009842 77 LGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (524)
Q Consensus 77 ~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~- 149 (524)
... .+.. ..... ...+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......
T Consensus 88 ~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 88 KSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF-GALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred HHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhc
Confidence 000 0000 00000 0012334457889999998888889999999999998 788888777765555544332
Q ss_pred CcEEEEEeccC
Q 009842 150 KLKILITSATL 160 (524)
Q Consensus 150 ~~~ii~~SATl 160 (524)
+..+|+.|+-+
T Consensus 165 ~~tii~~sH~~ 175 (230)
T TIGR01184 165 RVTVLMVTHDV 175 (230)
T ss_pred CCEEEEEeCCH
Confidence 45667766654
No 317
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=4.8e-06 Score=79.12 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=82.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH--HHHHHHHH---HHHhC----CcccceEeE----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA--AVSVARRV---AQELG----VRLGEEVGY---- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l--a~~~~~~~---~~~~~----~~~~~~vg~---- 83 (524)
+.+|+.+.|+||+||||||++..+........|...+...+.... .....+.+ .+... ..+...+.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 107 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF 107 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhc
Confidence 568999999999999999999998887665544333222221000 00000000 00000 000000000
Q ss_pred -Ee-ecc-------c-----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 84 -AI-RFE-------D-----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 84 -~~-~~~-------~-----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
.. ... . .......+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......
T Consensus 108 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~ 186 (237)
T PRK11614 108 AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS-LGLAPIIIQQIFDTIEQLREQ 186 (237)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHC
Confidence 00 000 0 00011233447888888888888889999999999998 788888776655555443333
Q ss_pred CcEEEEEeccCChHHHhhhc
Q 009842 150 KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 150 ~~~ii~~SATl~~~~~~~~~ 169 (524)
+..+|+.|+. .+.+.++.
T Consensus 187 ~~tiii~sH~--~~~~~~~~ 204 (237)
T PRK11614 187 GMTIFLVEQN--ANQALKLA 204 (237)
T ss_pred CCEEEEEeCc--HHHHHhhC
Confidence 5566666554 34444443
No 318
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.03 E-value=5.5e-05 Score=73.17 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=49.0
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCChHHHhhhc
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...+...... +..+|+.|+-+ +.+..+.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~--~~~~~~~ 217 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALILRPKVIIADEAL-ASLDMSMRSQLINLMLELQEKQGISYIYVTQHL--GMMKHIS 217 (267)
T ss_pred chhcCHHHHHHHHHHHHHHhCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH--HHHHHhc
Confidence 4458899999999888889999999999998 788888766655555443321 45566665543 4444443
No 319
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.03 E-value=1.2e-05 Score=75.31 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=81.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH----HHHHHHHH---H---HhC-CcccceEeE--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA----VSVARRVA---Q---ELG-VRLGEEVGY-- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la----~~~~~~~~---~---~~~-~~~~~~vg~-- 83 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+..... ....+.+. + .+. ..+...+.+
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH
Confidence 5689999999999999999999998876554443332222211000 00000000 0 000 000000000
Q ss_pred ----Eee-------cc---c----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 84 ----AIR-------FE---D----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 84 ----~~~-------~~---~----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
... .. . ....+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+...+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 108 ELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPT-AALDSKSGRDVVELMQK 186 (220)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHH
Confidence 000 00 0 00012233447889988888888899999999999998 78888876665555544
Q ss_pred hcc-cCcEEEEEeccCC
Q 009842 146 LRA-SKLKILITSATLD 161 (524)
Q Consensus 146 ~~~-~~~~ii~~SATl~ 161 (524)
... .+..+|+.|.-++
T Consensus 187 ~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 187 LAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHcCCEEEEEeCCHH
Confidence 332 2567777777653
No 320
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=8.9e-05 Score=75.25 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=77.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCC---CCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcc
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT---KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~---~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 94 (524)
..++.+.++||||+||||++..+....... ...-++..-..|..+.++...+++.+|..+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~--------------- 253 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS--------------- 253 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec---------------
Confidence 467899999999999999888776543111 12233344446777777777777777644311
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhh
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~ 167 (524)
+-++..+...+. .+.+.++++||.+- +......+...++.+.......-.++++|||...+.+.+
T Consensus 254 ----v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 254 ----IKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----CCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 012222222222 36678999999986 444334445556665443332456788999987665444
No 321
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=6.5e-05 Score=73.25 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=47.4
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 142 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPT-AGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 44558889999998888899999999999998 78888877665555554433345666666543
No 322
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=1.1e-05 Score=76.67 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=46.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 134 ~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4457889999998888899999999999998 788888776655555443332 45677766654
No 323
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=7.5e-06 Score=79.42 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=47.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......++..+......+..+|+.|+.+
T Consensus 133 ~~~~LSgG~~qrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 133 PIQCLSHGQKKRVAIAGALVLQARYLLLDEPT-AGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 44557899999998888899999999999998 78888876665554444332245666766654
No 324
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=6.8e-06 Score=77.76 Aligned_cols=147 Identities=21% Similarity=0.279 Sum_probs=82.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------H--HHHHHHHHHHHhCCcc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------A--AVSVARRVAQELGVRL 77 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------l--a~~~~~~~~~~~~~~~ 77 (524)
.+..|+.+.|+||+||||||++..+........|...+-..+... + ...+.+.+.. +...
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~--~~~~ 98 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL--GLNP 98 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc--cccc
Confidence 356899999999999999999999988765544432221111100 0 0011111100 0000
Q ss_pred cceEeEEeeccc-----------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 78 GEEVGYAIRFED-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 78 ~~~vg~~~~~~~-----------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
. .......+. ....+..+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+...
T Consensus 99 ~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 99 G--LKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRQEMLTLVSQV 175 (232)
T ss_pred c--cCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0 000000000 00012344458899999988888899999999999998 788888766655555443
Q ss_pred ccc-CcEEEEEeccCChHHHhhhc
Q 009842 147 RAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 147 ~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
... +..+|+.|.-+ +.+..+.
T Consensus 176 ~~~~~~tiii~sH~~--~~~~~~~ 197 (232)
T PRK10771 176 CQERQLTLLMVSHSL--EDAARIA 197 (232)
T ss_pred HHhcCCEEEEEECCH--HHHHHhC
Confidence 321 45566655543 3344443
No 325
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=1.9e-05 Score=75.18 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=79.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-------------------hHHHHHHHHHHHHhCCcc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------------------VAAVSVARRVAQELGVRL 77 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-------------------~la~~~~~~~~~~~~~~~ 77 (524)
+.+|+.+.|.||+||||||++..++....+..|...+-..+.. .....+.+.+.- +...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~--~~~~ 103 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY--GPML 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhc--chhh
Confidence 5689999999999999999999998876554443222111100 000011111100 0000
Q ss_pred cce----EeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-
Q 009842 78 GEE----VGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS- 149 (524)
Q Consensus 78 ~~~----vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~- 149 (524)
... +.. ...... ...+....-.+.|...+..+...++.+.+++|+||+- ..+|......+...+......
T Consensus 104 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~ 181 (241)
T PRK14250 104 KGEKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT-SALDPTSTEIIEELIVKLKNKM 181 (241)
T ss_pred cCcHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhC
Confidence 000 000 000000 0012234457899999998888889999999999998 788887766655544443321
Q ss_pred CcEEEEEeccC
Q 009842 150 KLKILITSATL 160 (524)
Q Consensus 150 ~~~ii~~SATl 160 (524)
+..+|+.|+-+
T Consensus 182 g~tii~~sH~~ 192 (241)
T PRK14250 182 NLTVIWITHNM 192 (241)
T ss_pred CCEEEEEeccH
Confidence 45666766654
No 326
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.02 E-value=2.4e-05 Score=84.88 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=83.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-------------------HHHHHHH--------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-------------------VSVARRV-------- 69 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-------------------~~~~~~~-------- 69 (524)
+++|+.+.|+|++||||||++..++....+.+|...+-..+..... ..+.+.+
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d 443 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISE 443 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCH
Confidence 5689999999999999999999999887776554333222211110 0111111
Q ss_pred ------HHHhCCc--cc-ceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHH
Q 009842 70 ------AQELGVR--LG-EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (524)
Q Consensus 70 ------~~~~~~~--~~-~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l 140 (524)
.+..|.. +. ..-|+.. ....+ =.-.+.|..+|..+.+..+++.+++++||+- ..+|.+.-..+.
T Consensus 444 ~~i~~a~~~~gl~~~i~~lp~Gldt----~i~e~--g~~LSGGqrQRialARaLl~~~~illlDEpt-s~LD~~t~~~i~ 516 (592)
T PRK10790 444 EQVWQALETVQLAELARSLPDGLYT----PLGEQ--GNNLSVGQKQLLALARVLVQTPQILILDEAT-ANIDSGTEQAIQ 516 (592)
T ss_pred HHHHHHHHHcCcHHHHHhccccccc----cccCC--CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHH
Confidence 1111100 00 0001110 00010 1127889999999999999999999999998 688888777766
Q ss_pred HHHHhhcccCcEEEEEeccC
Q 009842 141 KRLVNLRASKLKILITSATL 160 (524)
Q Consensus 141 ~~i~~~~~~~~~ii~~SATl 160 (524)
+.+....+ +..+|+.|+-+
T Consensus 517 ~~l~~~~~-~~tvIivtHr~ 535 (592)
T PRK10790 517 QALAAVRE-HTTLVVIAHRL 535 (592)
T ss_pred HHHHHHhC-CCEEEEEecch
Confidence 66655444 67788877765
No 327
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.02 E-value=8.3e-06 Score=87.88 Aligned_cols=142 Identities=24% Similarity=0.282 Sum_probs=84.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcccceEeEEeec--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYAIRF-- 87 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~~~~vg~~~~~-- 87 (524)
+++|+.+.++|||||||||++..++....+..|...+-.++.+.... ++.+.++ +. ++..+.+.+.+....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at 431 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDAT 431 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCC
Confidence 67899999999999999999999888877755544443444332221 1122221 10 111111111111000
Q ss_pred ----------------ccccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 88 ----------------EDRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 88 ----------------~~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
-...+. ++.+ .-.+.|..++..+.+..+.+..++|+||+. ..+|...-..+.+.+..
T Consensus 432 ~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT-SalD~~tE~~I~~~l~~ 510 (567)
T COG1132 432 DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT-SALDTETEALIQDALKK 510 (567)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc-cccCHHhHHHHHHHHHH
Confidence 000011 1112 136889999999999999999999999999 67888776665555554
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+++.++=+
T Consensus 511 l~~-~rT~iiIaHRl 524 (567)
T COG1132 511 LLK-GRTTLIIAHRL 524 (567)
T ss_pred Hhc-CCEEEEEeccH
Confidence 443 44555565554
No 328
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.01 E-value=2.4e-05 Score=73.75 Aligned_cols=64 Identities=27% Similarity=0.269 Sum_probs=47.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|..+
T Consensus 140 ~~~~LS~G~~qrl~laral~~~p~illlDEP~-~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPT-SGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45557889988888888888999999999998 78888776665555544333245666666655
No 329
>PF13245 AAA_19: Part of AAA domain
Probab=98.01 E-value=2.2e-05 Score=59.71 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=40.8
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CCCCcEEEEcccchhHHHHHHHHH
Q 009842 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRV 69 (524)
Q Consensus 13 i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~---~~~~~~i~~~~P~r~la~~~~~~~ 69 (524)
|..++.++..++|.||.|||||+.+...+.... ...+..++++.|++.++.++.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344555577778899999999944444433322 112668999999999999998887
No 330
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=4.6e-05 Score=77.44 Aligned_cols=138 Identities=24% Similarity=0.292 Sum_probs=82.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HH-----------------------HHHHHHH--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AV-----------------------SVARRVA-- 70 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~-----------------------~~~~~~~-- 70 (524)
+.+|+.++|.||+||||||++..+.....+..|...+-..+.... .. .+.+.+.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 468999999999999999999999887766544333322221000 00 0111110
Q ss_pred -HHhCCcc----------cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHH
Q 009842 71 -QELGVRL----------GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (524)
Q Consensus 71 -~~~~~~~----------~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~ 139 (524)
...+... -..+| ... ..+....-.+.|+.++..+...++.+.+++++||+- ..+|......+
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~g----L~~--~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt-s~LD~~~r~~l 203 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVG----LEN--YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF-SALDPLIRTEM 203 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcC----CCh--hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHH
Confidence 0000000 00000 000 012334458899999999988899999999999998 78888877766
Q ss_pred HHHHHhhcc-cCcEEEEEeccCC
Q 009842 140 VKRLVNLRA-SKLKILITSATLD 161 (524)
Q Consensus 140 l~~i~~~~~-~~~~ii~~SATl~ 161 (524)
.+.+..... .+..+|+.|+-++
T Consensus 204 ~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 204 QDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHHHHHHHCCCeEEEEECCHH
Confidence 555554432 2556777776553
No 331
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.01 E-value=0.00011 Score=69.21 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=47.5
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 146 ~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 146 PPATFSGGEQQRVNIARGFIADYPILLLDEPT-ASLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34557889988888888889999999999997 78888877665555544433356677777653
No 332
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=1.2e-05 Score=79.17 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=46.8
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|+-+
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPT-AGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 34457888988888888899999999999998 78888776665555544333356677766654
No 333
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.01 E-value=7.4e-06 Score=78.50 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=48.4
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+- .+.+.++.
T Consensus 141 ~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~--~~~~~~~~ 211 (250)
T PRK11264 141 YPRRLSGGQQQRVAIARALAMRPEVILFDEPT-SALDPELVGEVLNTIRQLAQEKRTMVIVTHE--MSFARDVA 211 (250)
T ss_pred ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC--HHHHHHhc
Confidence 34457889988888888889999999999998 7888887666555444433324556665544 33444443
No 334
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.01 E-value=3e-05 Score=84.00 Aligned_cols=138 Identities=22% Similarity=0.298 Sum_probs=86.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcc-----------
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRL----------- 77 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~----------- 77 (524)
.+..|+.+.|+|+.||||||++..+.....+..|...+-..+...... ++.+.+. ++ +...+
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~ 574 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA 574 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence 356899999999999999999999998877766655444444322211 1111110 00 00000
Q ss_pred -------------------cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHH
Q 009842 78 -------------------GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (524)
Q Consensus 78 -------------------~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~ 138 (524)
...-||.......- .-.+.|..++.++.+..+.+++++|+||+- ..+|...-..
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G------~~LSGGQrQrlalARaLl~~P~ILlLDEaT-SaLD~~sE~~ 647 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG------ANLSGGQRQRLALARALLSKPKILLLDEAT-SALDPETEAI 647 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCC------CCCCHHHHHHHHHHHHhccCCCEEEEeCcc-cccCHhHHHH
Confidence 00011111110000 016889999999999999999999999998 6788877766
Q ss_pred HHHHHHhhcccCcEEEEEeccCC
Q 009842 139 LVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 139 ~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
+...+..... +..+|+.|+=++
T Consensus 648 I~~~L~~~~~-~~T~I~IaHRl~ 669 (709)
T COG2274 648 ILQNLLQILQ-GRTVIIIAHRLS 669 (709)
T ss_pred HHHHHHHHhc-CCeEEEEEccch
Confidence 6666665554 567777777654
No 335
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.01 E-value=1.6e-05 Score=72.35 Aligned_cols=139 Identities=23% Similarity=0.308 Sum_probs=80.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc-chhHHHHHHH--------------HHHHHhCCcccceE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVAR--------------RVAQELGVRLGEEV 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P-~r~la~~~~~--------------~~~~~~~~~~~~~v 81 (524)
+..|+.+.+.|++|+||||++..++.......|.+.+-... ++....+.++ ++.-+-+...+...
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~ 105 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYA 105 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhc
Confidence 56899999999999999999999999877655544443332 1222222222 11100011111110
Q ss_pred eEE----ee-ccc--------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 82 GYA----IR-FED--------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 82 g~~----~~-~~~--------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.-. .. .+. +...+..--.++.|.-+.+.+.+.++.+++++++||.- ..+...+...+.+.+...+.
T Consensus 106 ~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs-~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 106 RRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred ccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCc-cCcCHHHHHHHHHHHHHHHH
Confidence 000 00 000 00011222236778777777888899999999999998 57788777776666665553
Q ss_pred c-CcEEEEE
Q 009842 149 S-KLKILIT 156 (524)
Q Consensus 149 ~-~~~ii~~ 156 (524)
. ...|++.
T Consensus 185 ~~g~tIlLV 193 (237)
T COG0410 185 EGGMTILLV 193 (237)
T ss_pred cCCcEEEEE
Confidence 2 3355554
No 336
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.01 E-value=7.2e-05 Score=72.56 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=46.5
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...+......+..+|+.|.-+
T Consensus 139 ~~~~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 139 QIGELSGGQKKRVFLARAIAQQGQVILLDEPF-TGVDVKTEARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34457889988888888889999999999998 78888876665555544333345666666544
No 337
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=1.8e-05 Score=75.87 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=82.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE--------------EcccchhHH-HHHHHHHH---HHhCCccc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG--------------VTQPRRVAA-VSVARRVA---QELGVRLG 78 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~--------------~~~P~r~la-~~~~~~~~---~~~~~~~~ 78 (524)
+.+|+.+.|.||+||||||++..++....+..|...+ +.+...... ..+.+.+. ...+....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence 5689999999999999999999998876554443211 111100000 01111111 00010000
Q ss_pred ---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCc
Q 009842 79 ---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKL 151 (524)
Q Consensus 79 ---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~ 151 (524)
..+.. ...... ..+....-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+.
T Consensus 104 ~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~ 180 (255)
T PRK11248 104 QRLEIAHQMLKKVGLEG--AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF-GALDAFTREQMQTLLLKLWQETGK 180 (255)
T ss_pred HHHHHHHHHHHHcCChh--HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHhcCC
Confidence 00000 000000 012234447889999988888889999999999998 78888877765555544322 245
Q ss_pred EEEEEeccCChHHHhhhc
Q 009842 152 KILITSATLDGEKVSKFF 169 (524)
Q Consensus 152 ~ii~~SATl~~~~~~~~~ 169 (524)
.+|+.|+-+ +.+..+.
T Consensus 181 tviivsH~~--~~~~~~~ 196 (255)
T PRK11248 181 QVLLITHDI--EEAVFMA 196 (255)
T ss_pred EEEEEeCCH--HHHHHhC
Confidence 667766544 3444443
No 338
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=9e-05 Score=72.43 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=83.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------------H-HHHHHHHHHH--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------A-AVSVARRVAQ-- 71 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------------l-a~~~~~~~~~-- 71 (524)
+..|+.+.|+||+||||||++..+.....+..|...+-..+... . ...+.+.+.-
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 46899999999999999999999988765544433221111100 0 0011111110
Q ss_pred -HhCCccc---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 72 -ELGVRLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 72 -~~~~~~~---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
..+.... ..+.. .+........+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt-~gLD~~~~~~l~~~l~ 188 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT-AGLDPKGRDEILNKIK 188 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHH
Confidence 0000000 00000 00010000123345568999999999999999999999999998 7888887666555444
Q ss_pred hhccc-CcEEEEEeccCChHHHhhhc
Q 009842 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 145 ~~~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
..... +..+|+.|+-+ +.+..+.
T Consensus 189 ~l~~~~g~tvi~vtHd~--~~~~~~~ 212 (287)
T PRK13637 189 ELHKEYNMTIILVSHSM--EDVAKLA 212 (287)
T ss_pred HHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 33322 45566655543 3444443
No 339
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=1.3e-05 Score=78.23 Aligned_cols=150 Identities=18% Similarity=0.245 Sum_probs=84.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch---hHHHHHHHHHH---HH-----hCCcccceE----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---VAAVSVARRVA---QE-----LGVRLGEEV---- 81 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r---~la~~~~~~~~---~~-----~~~~~~~~v---- 81 (524)
+..|+.+.|+||+||||||++..+........|...+...+.. ....+..+.+. +. ....+...+
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 108 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGA 108 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHH
Confidence 5689999999999999999999998876655443333222210 00000001000 00 000000000
Q ss_pred ---eEEeec-----c------c-ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 82 ---GYAIRF-----E------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 82 ---g~~~~~-----~------~-~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
+..... . . ....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt-~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 109 VNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT-AGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHH
Confidence 000000 0 0 00013445558899999999988899999999999998 788888766654444443
Q ss_pred ccc-CcEEEEEeccCChHHHhhhc
Q 009842 147 RAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 147 ~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
... +..+|+.|+-+ +.+..+.
T Consensus 188 ~~~~g~tillvsH~~--~~~~~~~ 209 (283)
T PRK13636 188 QKELGLTIIIATHDI--DIVPLYC 209 (283)
T ss_pred HHhCCCEEEEEecCH--HHHHHhC
Confidence 322 45666665544 3344443
No 340
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.00 E-value=1e-05 Score=76.78 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=46.8
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 150 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT-IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 34458889988888888889999999999998 789988877766655544332 45566655543
No 341
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.00 E-value=3.7e-05 Score=82.83 Aligned_cols=142 Identities=19% Similarity=0.254 Sum_probs=84.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHH-HHHHHH---HH---hCCcccceEeEE-----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRVA---QE---LGVRLGEEVGYA----- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~-~~~~~~---~~---~~~~~~~~vg~~----- 84 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..+.+....+ ..+.++ ++ +...+.+.+.+.
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~ 442 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNAS 442 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccC
Confidence 568999999999999999999999988776655544433332221111 111110 00 000000000000
Q ss_pred ----------eeccccc--Cc--cc----ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 85 ----------IRFEDRT--SE--RT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 85 ----------~~~~~~~--~~--~~----~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
...++.. +. ++ .-.-.+.|..+|..+.+..+++.+++|+||+- ..+|.+....+.+.+...
T Consensus 443 ~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t-s~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 443 DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT-EGLDAETERQILELLAEH 521 (574)
T ss_pred HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000000 00 11 22337889999999999999999999999998 688888777766666554
Q ss_pred cccCcEEEEEeccC
Q 009842 147 RASKLKILITSATL 160 (524)
Q Consensus 147 ~~~~~~ii~~SATl 160 (524)
.+ +..+|+.|+-+
T Consensus 522 ~~-~~tviiitHr~ 534 (574)
T PRK11160 522 AQ-NKTVLMITHRL 534 (574)
T ss_pred cC-CCEEEEEecCh
Confidence 43 66677776655
No 342
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.00 E-value=5.2e-06 Score=83.78 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=80.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------H--HHHHHHHHHHHh---CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------A--AVSVARRVAQEL---GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------l--a~~~~~~~~~~~---~~ 75 (524)
+..|+.+.|.||+||||||++..+++......|...+-..+... + -..+.+.++-.+ +.
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 116 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT 116 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence 56899999999999999999999998776654432221111000 0 001111111000 00
Q ss_pred ccc---ceEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-
Q 009842 76 RLG---EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (524)
Q Consensus 76 ~~~---~~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~- 148 (524)
... ..+.. .+.... ..+....-.+.|..++..+....+.+.+++++||+- ..+|......+...+.....
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~--~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 117 PAAEITPRVMEALRMVQLEE--FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL-SALDYKLRKQMQNELKALQRK 193 (375)
T ss_pred CHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHh
Confidence 000 00000 000000 012233447889999999999999999999999998 78888876665444444332
Q ss_pred cCcEEEEEeccC
Q 009842 149 SKLKILITSATL 160 (524)
Q Consensus 149 ~~~~ii~~SATl 160 (524)
.+..+|+.|+-.
T Consensus 194 ~g~tiI~vTHd~ 205 (375)
T PRK09452 194 LGITFVFVTHDQ 205 (375)
T ss_pred cCCEEEEEeCCH
Confidence 156677766543
No 343
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.00 E-value=4.7e-06 Score=79.12 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=80.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch----------------hHH--HHHHHHHHH--Hh-CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------VAA--VSVARRVAQ--EL-GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r----------------~la--~~~~~~~~~--~~-~~ 75 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+.. ..- ..+.+.+.. .. +.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 102 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC
Confidence 5689999999999999999999998876554443221111100 000 011111110 00 00
Q ss_pred ccc---ceEeEEe-ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-C
Q 009842 76 RLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (524)
Q Consensus 76 ~~~---~~vg~~~-~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~ 150 (524)
... ..+.... .+.-....+....-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+...... +
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~ 181 (237)
T TIGR00968 103 PKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF-GALDAKVRKELRSWLRKLHDEVH 181 (237)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 0000000 000000012334457889999988888899999999999998 788888777765655543332 4
Q ss_pred cEEEEEeccC
Q 009842 151 LKILITSATL 160 (524)
Q Consensus 151 ~~ii~~SATl 160 (524)
..+|+.|.-+
T Consensus 182 ~tvli~sH~~ 191 (237)
T TIGR00968 182 VTTVFVTHDQ 191 (237)
T ss_pred CEEEEEeCCH
Confidence 5677766644
No 344
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.00 E-value=1.4e-05 Score=86.22 Aligned_cols=143 Identities=24% Similarity=0.264 Sum_probs=85.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccceEeEEe---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGYAI--- 85 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~vg~~~--- 85 (524)
.+.+|+.+.|+|++||||||++..+++...+..|...+-..+..... .+..+.++ +. +...+.+.+.+..
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 433 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQ 433 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCC
Confidence 35689999999999999999999999887766555444333321111 11111110 00 0000000000000
Q ss_pred -------------ecc---cccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHH
Q 009842 86 -------------RFE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (524)
Q Consensus 86 -------------~~~---~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i 143 (524)
..+ ...+. ++.+ .-.+.|..+|..+.+..+++.+++++||+- ..+|.+....+.+.+
T Consensus 434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt-s~LD~~~~~~i~~~L 512 (571)
T TIGR02203 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT-SALDNESERLVQAAL 512 (571)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHH
Confidence 000 00000 0111 237899999999999999999999999998 688888877776666
Q ss_pred HhhcccCcEEEEEeccC
Q 009842 144 VNLRASKLKILITSATL 160 (524)
Q Consensus 144 ~~~~~~~~~ii~~SATl 160 (524)
....+ +..+|+.|+..
T Consensus 513 ~~~~~-~~tiIiitH~~ 528 (571)
T TIGR02203 513 ERLMQ-GRTTLVIAHRL 528 (571)
T ss_pred HHHhC-CCEEEEEehhh
Confidence 65544 67777777765
No 345
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=8.4e-05 Score=72.62 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=82.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch---------h---------------H-HHHHHHHHHH
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR---------V---------------A-AVSVARRVAQ 71 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r---------~---------------l-a~~~~~~~~~ 71 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.. . + ...+.+.+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 5689999999999999999999999877655443222111100 0 0 0011111110
Q ss_pred ---HhCCcccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 72 ---ELGVRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 72 ---~~~~~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
..+..... .+-. .+... ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt-~~LD~~~~~~l~~~ 187 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFS-RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT-AGLDPQSKRQVMRL 187 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCC-hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHH
Confidence 00000000 0000 00000 00112345568899999999888899999999999998 78888876665554
Q ss_pred HHhhcc-cCcEEEEEeccCC
Q 009842 143 LVNLRA-SKLKILITSATLD 161 (524)
Q Consensus 143 i~~~~~-~~~~ii~~SATl~ 161 (524)
+..... .+..+|+.|.-++
T Consensus 188 l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 188 LKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred HHHHHHhCCCEEEEEecCHH
Confidence 444332 2567777766543
No 346
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.00 E-value=1.2e-05 Score=86.47 Aligned_cols=141 Identities=21% Similarity=0.190 Sum_probs=83.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHH--------------HHHh--CCc-c-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRV--------------AQEL--GVR-L- 77 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~--------------~~~~--~~~-~- 77 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..|...... +..+.+ .+.. +.. .
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~ 417 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDAT 417 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCC
Confidence 56899999999999999999999988877665544443333221111 111110 0000 000 0
Q ss_pred -------cceEeEEeecccccCc--c----cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 78 -------GEEVGYAIRFEDRTSE--R----TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 78 -------~~~vg~~~~~~~~~~~--~----~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
...++... +-...+. + ..-.-.+.|..+|..+.+..+++.+++++||+- ..+|......+.+.+.
T Consensus 418 ~~~~~~~~~~~~l~~-~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt-s~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 418 QQEIEHVARLASVHD-DILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL-SAVDGRTEHQILHNLR 495 (569)
T ss_pred HHHHHHHHHHcCCHH-HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 00000000 0000000 0 111237889999999999999999999999998 6888887777666665
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
...+ +..+|+.|+-+
T Consensus 496 ~~~~-~~tii~itH~~ 510 (569)
T PRK10789 496 QWGE-GRTVIISAHRL 510 (569)
T ss_pred HHhC-CCEEEEEecch
Confidence 5443 66677766654
No 347
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=6.5e-06 Score=76.87 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=46.6
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPF-SALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 34557889988888888889999999999998 788888766655555443332 45566666544
No 348
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.99 E-value=1.3e-05 Score=86.57 Aligned_cols=142 Identities=21% Similarity=0.210 Sum_probs=83.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccce---------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEE--------- 80 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~--------- 80 (524)
+++|+.++|+|++||||||++..++....+..|...+-..|..... .+..+.++ +. +...+.+.
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~ 442 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDAT 442 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCC
Confidence 4689999999999999999999999887766554333332321110 11111110 00 00000000
Q ss_pred ----------EeEE--e-ecccccC--cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 81 ----------VGYA--I-RFEDRTS--ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 81 ----------vg~~--~-~~~~~~~--~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
+|-. + ++..... -...-.-.+.|..++....+..+++.+++|+||+- ..+|.+....+.+.+..
T Consensus 443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt-s~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 443 DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT-SALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc-cccCHHHHHHHHHHHHH
Confidence 0000 0 0000000 00112237889999999999999999999999998 67888876665565655
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+|+.|+-+
T Consensus 522 ~~~-~~t~IiitH~~ 535 (576)
T TIGR02204 522 LMK-GRTTLIIAHRL 535 (576)
T ss_pred HhC-CCEEEEEecch
Confidence 544 67777777765
No 349
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.99 E-value=7.8e-05 Score=71.36 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=43.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 136 ~~~~LS~G~~qrv~laral~~~p~illlDEPt-s~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPS-SYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 34447888888888877788899999999998 78888765554444433322245566666554
No 350
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.99 E-value=5.7e-06 Score=83.19 Aligned_cols=141 Identities=20% Similarity=0.227 Sum_probs=79.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-----HHHHHHHH---HHHhC----CcccceEeEE
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-----AVSVARRV---AQELG----VRLGEEVGYA 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-----a~~~~~~~---~~~~~----~~~~~~vg~~ 84 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+.... .....+.+ .+... ..+.+.+.+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 568999999999999999999999887655444322211110000 00000000 00000 0000000000
Q ss_pred ---------------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 85 ---------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 85 ---------------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
..... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt-s~LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 101 MAKSMVAQFDKIVALLGIEP--LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL-ASLDLPRKRELLPYLERLARE 177 (352)
T ss_pred hhhhhHHHHHHHHHHcCCch--hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHh
Confidence 00000 012334557899999999988899999999999998 788887766555444433322
Q ss_pred -CcEEEEEeccC
Q 009842 150 -KLKILITSATL 160 (524)
Q Consensus 150 -~~~ii~~SATl 160 (524)
+..+|+.|+-+
T Consensus 178 ~g~tii~vTHd~ 189 (352)
T PRK11144 178 INIPILYVSHSL 189 (352)
T ss_pred cCCeEEEEecCH
Confidence 45677776654
No 351
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=1.7e-05 Score=77.19 Aligned_cols=142 Identities=22% Similarity=0.204 Sum_probs=82.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-----hH----------------HHHHHHHHHH---H
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-----VA----------------AVSVARRVAQ---E 72 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-----~l----------------a~~~~~~~~~---~ 72 (524)
+.+|+.+.|.|++||||||++..+........|...+-..+.. .. ...+.+.+.. .
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN 109 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHH
Confidence 5689999999999999999999998877665543322111110 00 0011111110 0
Q ss_pred hCCcccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 73 LGVRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 73 ~~~~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
.+..... .+.. ...... ..+..+.-.+.|+..+..+...++.+.+++|+||+- ..+|......+++.+...
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 110 QGIPREEMIKRVDEALLAVNMLD--FKTREPARLSGGQKQRVAVAGIIALRPEIIILDEST-SMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0000000 0000 000000 012344558899999998888899999999999998 788888776655555443
Q ss_pred ccc-CcEEEEEeccCC
Q 009842 147 RAS-KLKILITSATLD 161 (524)
Q Consensus 147 ~~~-~~~ii~~SATl~ 161 (524)
... +..+|+.|+-++
T Consensus 187 ~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 187 KEKYQLTVLSITHDLD 202 (277)
T ss_pred HHhcCCEEEEEeCCHH
Confidence 332 567777776654
No 352
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.98 E-value=8.1e-06 Score=78.06 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=46.5
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 141 ~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~ 203 (247)
T TIGR00972 141 SALGLSGGQQQRLCIARALAVEPEVLLLDEPT-SALDPIATGKIEELIQELKK-KYTIVIVTHNM 203 (247)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCH
Confidence 34557899999999888899999999999998 78888877665555544433 44566655544
No 353
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=1.4e-05 Score=76.82 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPA-AGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 3447888988888888899999999999998 788888766655555444332 45677766654
No 354
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.98 E-value=1.7e-05 Score=78.96 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=48.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
..-.+.|+.++..+...++.+.+++|+||.- ..+|......+++.+...... +..+|+.|+-++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPV-SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3457899999999999999999999999998 788888776665555444332 567888777654
No 355
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.98 E-value=1.8e-05 Score=76.90 Aligned_cols=142 Identities=16% Similarity=0.201 Sum_probs=80.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EEEcccchhH-HHHHHHHHHHHhCCccc--------ceEe
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVA-AVSVARRVAQELGVRLG--------EEVG 82 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~-----i~~~~P~r~l-a~~~~~~~~~~~~~~~~--------~~vg 82 (524)
+..|+.+.|+||+||||||++..++....+..|.. +.++.....+ ...+.+.+. ++.... ...+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~--~~~~~~~~~~~~~l~~~~ 137 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII--FGVSYDEYRYKSVVKACQ 137 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhh--cccccCHHHHHHHHHHhC
Confidence 56899999999999999999999988766554432 2222111100 001111110 000000 0000
Q ss_pred EEe---eccccc--CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 83 YAI---RFEDRT--SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 83 ~~~---~~~~~~--~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
... ...... .......-.+.|...+..+....+.+.+++|+||+- ..+|......++..++.....+..+|+.|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt-~gLD~~~~~~l~~~ll~~~~~~~tIiiis 216 (282)
T cd03291 138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVFTEKEIFESCVCKLMANKTRILVT 216 (282)
T ss_pred CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 000 000000 001123457899999999988899999999999998 68888776665554433222255677766
Q ss_pred ccCC
Q 009842 158 ATLD 161 (524)
Q Consensus 158 ATl~ 161 (524)
+-++
T Consensus 217 H~~~ 220 (282)
T cd03291 217 SKME 220 (282)
T ss_pred CChH
Confidence 6543
No 356
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.98 E-value=1.1e-05 Score=77.55 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=80.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHH---HHHhC----CcccceE--eE---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELG----VRLGEEV--GY--- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~---~~~~~----~~~~~~v--g~--- 83 (524)
+.+|+.+.|.||+||||||++..+........|...+-..+... ......+.+ .+... ..+...+ +.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPH 103 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhh
Confidence 56899999999999999999999988766554432221211100 000000000 01000 0000000 00
Q ss_pred ----Eee-------cc---c----ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 84 ----AIR-------FE---D----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 84 ----~~~-------~~---~----~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
... .. . ....+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPT-NHLDVRAQLETLALVRE 182 (256)
T ss_pred hhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHH
Confidence 000 00 0 00012344557889998888888889999999999998 78888776665444444
Q ss_pred hcccCcEEEEEeccCC
Q 009842 146 LRASKLKILITSATLD 161 (524)
Q Consensus 146 ~~~~~~~ii~~SATl~ 161 (524)
....+..+|+.|..++
T Consensus 183 ~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 183 LAATGVTVVAALHDLN 198 (256)
T ss_pred HHhcCCEEEEEeCCHH
Confidence 3322456777776543
No 357
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1.3e-05 Score=78.35 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=80.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-------------------------hHHHHHHHHHHH
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-------------------------VAAVSVARRVAQ 71 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-------------------------~la~~~~~~~~~ 71 (524)
+.+|+.+.|.||+||||||++..++....+..|...+-..+.. .....+.+.+.-
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 5689999999999999999999999877655443222111100 000011111110
Q ss_pred --H-hCCcccc---eEeE---EeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 72 --E-LGVRLGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 72 --~-~~~~~~~---~vg~---~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
. .+..... .+-. ....+ ....+..+.-.+.|+..+..+...++.+.+++|+||+- ..+|......+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt-~gLD~~~~~~l~~~ 187 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLS-EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA-AGLDPEGRKEMMQL 187 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCC-hhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHH
Confidence 0 0000000 0000 00000 00112345568899999999988899999999999998 78888776665554
Q ss_pred HHhhcccCcEEEEEeccC
Q 009842 143 LVNLRASKLKILITSATL 160 (524)
Q Consensus 143 i~~~~~~~~~ii~~SATl 160 (524)
+......+..+|+.|+-+
T Consensus 188 l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 188 FKDYQKAGHTVILVTHNM 205 (287)
T ss_pred HHHHHhCCCEEEEEeCCH
Confidence 444332345666655543
No 358
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.97 E-value=2.5e-05 Score=78.80 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=48.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
..-.+.|+.++..+...+..+.+++++||+- ..+|......+.+.+.....+ +..+|+.|+-++
T Consensus 162 ~~~LSgGq~QRV~LARALa~~P~ILLlDEPt-s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 162 PGELSGGMQQRVGLARAFAMDADILLMDEPF-SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3447889999998888899999999999998 788888877766666554432 466777776654
No 359
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=1.2e-05 Score=77.61 Aligned_cols=144 Identities=21% Similarity=0.262 Sum_probs=80.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHH---HHHhCC----cccceEeEE---e
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELGV----RLGEEVGYA---I 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~---~~~~~~----~~~~~vg~~---~ 85 (524)
+..|+.+.|.||+||||||++..+........|...+...+... ...+..+.+ .+..+. .+...+.+. .
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPW 113 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccc
Confidence 56899999999999999999999988765544433222222100 000000100 010000 000000000 0
Q ss_pred -------e--cccc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 86 -------R--FEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 86 -------~--~~~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. .... ...+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 114 HGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT-SALDIAHQVDVLALVHR 192 (265)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHH
Confidence 0 0000 0012233347889988888888889999999999998 78888876665554444
Q ss_pred hccc-CcEEEEEeccCC
Q 009842 146 LRAS-KLKILITSATLD 161 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl~ 161 (524)
.... +..+|+.|+-++
T Consensus 193 l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 193 LSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHHhcCCEEEEEeCCHH
Confidence 3321 456777776543
No 360
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.96 E-value=7.3e-05 Score=64.03 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGYT 47 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~~ 47 (524)
+..+++.||+||||||++..++......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 6789999999999999999888776543
No 361
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.96 E-value=6.7e-06 Score=78.87 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=47.1
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
..-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+.++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVT-SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3447888888888888889999999999998 788887766655555443332 567777777653
No 362
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.96 E-value=1.4e-05 Score=88.17 Aligned_cols=141 Identities=24% Similarity=0.250 Sum_probs=83.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccceEeEEee---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGYAIR--- 86 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~vg~~~~--- 86 (524)
+.+|+.+.|+||+||||||++..++....+.+|...+-..|.+... .+..+.++ ++ +...+.+.+.+...
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~ 583 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTP 583 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCC
Confidence 5689999999999999999999999888776665555455533221 11111111 00 00000000000000
Q ss_pred ------------cc---cccCc--ccc----eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 87 ------------FE---DRTSE--RTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 87 ------------~~---~~~~~--~~~----i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.+ ...+. ++. -.-.+.|..+|..+.+..+++.+++|+||+- ..+|.+....+.+ ..
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT-SaLD~~te~~i~~--~~ 660 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT-SALDAECEQLLQE--SR 660 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc-cccCHHHHHHHHH--hh
Confidence 00 00000 111 1236889999999999999999999999998 6788876555433 22
Q ss_pred hcccCcEEEEEeccCC
Q 009842 146 LRASKLKILITSATLD 161 (524)
Q Consensus 146 ~~~~~~~ii~~SATl~ 161 (524)
..+ +..+|+.|+-++
T Consensus 661 ~~~-~~TvIiItHrl~ 675 (711)
T TIGR00958 661 SRA-SRTVLLIAHRLS 675 (711)
T ss_pred ccC-CCeEEEEeccHH
Confidence 223 667777777653
No 363
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.95 E-value=1.5e-05 Score=85.98 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=83.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccceEeEE-----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGYA----- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~vg~~----- 84 (524)
+.+|+.+.|+||+||||||++..++....+.+|...+-..+.+... .+..+.++ +. +...+.+.+.+.
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~ 437 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGAT 437 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCC
Confidence 4689999999999999999999998877766554433333322111 01111110 00 000000000000
Q ss_pred ----------eeccc---cc------CcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 ----------IRFED---RT------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ----------~~~~~---~~------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
...++ .. .-.....-.+.|..++..+.+..+.+.+++|+||+- ..+|.+....+.+.+..
T Consensus 438 ~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt-s~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 438 DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT-SALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHH
Confidence 00000 00 001122337889999999999999999999999998 78888887776665554
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+|+.|+-+
T Consensus 517 ~~~-~~tvI~isH~~ 530 (585)
T TIGR01192 517 LRK-NRTTFIIAHRL 530 (585)
T ss_pred HhC-CCEEEEEEcCh
Confidence 443 66677777654
No 364
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.95 E-value=0.00023 Score=71.09 Aligned_cols=91 Identities=24% Similarity=0.343 Sum_probs=63.7
Q ss_pred CCeEEEEecCCCCHHHHhcccCCCCCC--ceEEEEecCccccccCCCCeeEEEeCCcccceeecCCCCccccceeeecHH
Q 009842 246 MDAVILPLHGSLPPEMQVRVFSPPPPN--CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (524)
Q Consensus 246 ~~~~v~~lh~~l~~~~r~~v~~~f~~g--~~~ilvaT~i~e~gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~ 323 (524)
.|+.++.+-|+|++..|...++.|++. .+-.+++-...+..+|+-....|..-+ +-|||. -.-
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD----PWWNpa-----------Ve~ 725 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD----PWWNPA-----------VEW 725 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec----ccccHH-----------HHh
Confidence 488999999999999999999999976 334456666666677777777776421 222221 112
Q ss_pred hHHhhccccCCCCCCeEEEecCchhhhh
Q 009842 324 QANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (524)
Q Consensus 324 ~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 351 (524)
++.-|+-|.|.-+|=++++++-+...+.
T Consensus 726 Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 726 QAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred hhhhhHHhhcCccceeEEEeehhccHHH
Confidence 3445777777778999999987666554
No 365
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=0.00014 Score=69.57 Aligned_cols=126 Identities=16% Similarity=0.237 Sum_probs=69.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-EEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccce
Q 009842 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 19 ~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i-~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 97 (524)
+++.++++|++|+||||++..+............ +..-+.+..+.++.+..++..+..+ .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~--------~----------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--------I----------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE--------E-----------
Confidence 3478999999999999888777665432222222 2333455444443333333332111 0
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCC-ChHHHHHHHHHHHhhcccCcEEEEEeccCChHHH
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~-~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~ 165 (524)
...++..+...+..-....++++||||.+- ++. +...+.+ +..+.....++..++.+|||...+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~e-l~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 135 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHH-HHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 002344444333221123578999999998 443 4444555 44444443335668889999866443
No 366
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.95 E-value=4.8e-05 Score=83.90 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=82.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHH-HHHHH--------------------------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRV-------------------------- 69 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~-~~~~~-------------------------- 69 (524)
+.+|+.+.|+|++||||||++..++....+.+|...+-..+.+....+ +.+.+
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~ 555 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTL 555 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCH
Confidence 568999999999999999999999988877665544433332221111 11111
Q ss_pred ------HHHhCCcc---cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHH
Q 009842 70 ------AQELGVRL---GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (524)
Q Consensus 70 ------~~~~~~~~---~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l 140 (524)
.+..+..- ...-|+.. .... .-.-.+.|..+|..+.+..+++.+++|+||+- ..+|...-..+.
T Consensus 556 e~i~~al~~a~l~~~i~~lp~G~dt----~ige--~G~~LSGGQrQRialARAll~~p~iLiLDEpT-S~LD~~te~~i~ 628 (686)
T TIGR03797 556 DEAWEAARMAGLAEDIRAMPMGMHT----VISE--GGGTLSGGQRQRLLIARALVRKPRILLFDEAT-SALDNRTQAIVS 628 (686)
T ss_pred HHHHHHHHHcCcHHHHHhccccccc----cccC--CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHH
Confidence 00000000 00001100 0000 01236899999999999999999999999998 788888777766
Q ss_pred HHHHhhcccCcEEEEEeccC
Q 009842 141 KRLVNLRASKLKILITSATL 160 (524)
Q Consensus 141 ~~i~~~~~~~~~ii~~SATl 160 (524)
+.+.+. +..+|+.|+-+
T Consensus 629 ~~L~~~---~~T~IiItHr~ 645 (686)
T TIGR03797 629 ESLERL---KVTRIVIAHRL 645 (686)
T ss_pred HHHHHh---CCeEEEEecCh
Confidence 665543 34566666654
No 367
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.95 E-value=1.6e-05 Score=76.41 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=79.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHHHHH---HHHhCC----cccceEeEE---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELGV----RLGEEVGYA--- 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~~~~---~~~~~~----~~~~~vg~~--- 84 (524)
.+.+|+.+.|+||+||||||++..+........|...+-..+... ......+.+ .+.... .+.+.+.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 356899999999999999999999988766554433322222100 000000100 000000 000000000
Q ss_pred --e--ec-c-------c----ccCcccceeecchHHHHHHHHhCCCC------CCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 85 --I--RF-E-------D----RTSERTLIKYLTDGVLLREILSNPDL------SPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 85 --~--~~-~-------~----~~~~~~~i~~~T~g~l~~~l~~~~~l------~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
. .. . . ....+..+.-.+.|...+..+....+ .+.+++++||+- ..+|......+.+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~ 182 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT-SALDLAHQHHVLRL 182 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCc-ccCCHHHHHHHHHH
Confidence 0 00 0 0 00012345557888888888877776 489999999998 78888776655544
Q ss_pred HHhhc-ccCcEEEEEeccC
Q 009842 143 LVNLR-ASKLKILITSATL 160 (524)
Q Consensus 143 i~~~~-~~~~~ii~~SATl 160 (524)
+.... ..+..+|+.|+.+
T Consensus 183 l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 183 ARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred HHHHHHhcCCEEEEEECCH
Confidence 44433 2245677776654
No 368
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.95 E-value=1.3e-05 Score=85.81 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=83.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-------------------HHHHHHHHHhCCcc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-------------------SVARRVAQELGVRL 77 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-------------------~~~~~~~~~~~~~~ 77 (524)
+.+|+.+.|+||+||||||++..++....+.+|...+-..+.+.... .+.+.+.. .+...
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~-~~~~~ 419 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR-FGENA 419 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhc-cCCCC
Confidence 56899999999999999999999998876655543332222211110 11111100 00000
Q ss_pred --c------ceEeEE--e-eccc--ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 78 --G------EEVGYA--I-RFED--RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 78 --~------~~vg~~--~-~~~~--~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
. ...+.. + .... ...-.....-.+.|..+|..+.+..+++.+++|+||+- ..+|......+.+.+.
T Consensus 420 ~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN-SNLDEEGEQALANAIK 498 (544)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cccCHHHHHHHHHHHH
Confidence 0 000000 0 0000 00001123347899999999999999999999999998 6788877666555555
Q ss_pred hhcccCcEEEEEeccCC
Q 009842 145 NLRASKLKILITSATLD 161 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~ 161 (524)
.....+..+|+.|+-++
T Consensus 499 ~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 499 ALKARGITVVVITHRPS 515 (544)
T ss_pred HHhhCCCEEEEEeCCHH
Confidence 44322566777776653
No 369
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.95 E-value=0.0001 Score=70.90 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=46.7
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
..+.-.+.|...+..+...++.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT-GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 344557889999988888889999999999998 788888766655555443322 45566665544
No 370
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.94 E-value=2.7e-05 Score=74.88 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=50.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
...-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+-+ +.+..+.
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~--~~~~~~~ 219 (257)
T PRK10619 149 YPVHLSGGQQQRVSIARALAMEPEVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM--GFARHVS 219 (257)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhc
Confidence 34557889999988888899999999999998 78888876665554444333356677766644 3444443
No 371
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=6.7e-06 Score=82.35 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc------cc-h---------hH--HHHHHHHHHHHh---CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ------PR-R---------VA--AVSVARRVAQEL---GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~------P~-r---------~l--a~~~~~~~~~~~---~~ 75 (524)
+.+|+.+.|.||+||||||++..+........|...+-.. |. + .+ -..+.+.++-.+ +.
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~ 108 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV 108 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC
Confidence 5689999999999999999999999877665443222111 00 0 00 001111111000 00
Q ss_pred c----------ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 76 R----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 76 ~----------~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. ....+| .... .+....-.+.|..++..+.+..+.+.+++++||+- ..+|......+...+..
T Consensus 109 ~~~~~~~~v~~~l~~~g----l~~~--~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 109 PKEERKQRVKEALELVD----LAGF--EDRYVDQISGGQQQRVALARALILKPKVLLFDEPL-SNLDANLRRSMREKIRE 181 (351)
T ss_pred CHHHHHHHHHHHHHHcC----Cchh--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHH
Confidence 0 000000 0000 12223457899999999999999999999999997 78888876665444443
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
...+ +..+|+.|+-.
T Consensus 182 l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 182 LQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHhcCCEEEEEcCCH
Confidence 3321 46677766544
No 372
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.94 E-value=2.3e-05 Score=82.82 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=83.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-hhHHHHHHHHHH---HHh------------CCcccc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVA---QEL------------GVRLGE 79 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-r~la~~~~~~~~---~~~------------~~~~~~ 79 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+...+. ........+.++ +.. +..+..
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 3568999999999999999999999887766555433322221 100011111111 000 001111
Q ss_pred eEeEEeecccc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc
Q 009842 80 EVGYAIRFEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (524)
Q Consensus 80 ~vg~~~~~~~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~ 148 (524)
.+......... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.....
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~ 183 (490)
T PRK10938 105 IIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF-DGLDVASRQQLAELLASLHQ 183 (490)
T ss_pred hcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHh
Confidence 00000000000 0012345568899999999888889999999999988 78888876665555544433
Q ss_pred cCcEEEEEeccC
Q 009842 149 SKLKILITSATL 160 (524)
Q Consensus 149 ~~~~ii~~SATl 160 (524)
.+..+|+.|+.+
T Consensus 184 ~g~tvii~tH~~ 195 (490)
T PRK10938 184 SGITLVLVLNRF 195 (490)
T ss_pred cCCeEEEEeCCH
Confidence 345677766654
No 373
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.94 E-value=3e-05 Score=74.99 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=45.9
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~-~~tii~isH~~ 197 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFA-DCTVILSEHRI 197 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEECCH
Confidence 7899999999999999999999999998 78888877665555554433 56677776665
No 374
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.00017 Score=63.80 Aligned_cols=138 Identities=25% Similarity=0.264 Sum_probs=80.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE--------------EEEcc-----cchhHHHHHHHHHHHHhCC-
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI--------------IGVTQ-----PRRVAAVSVARRVAQELGV- 75 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~--------------i~~~~-----P~r~la~~~~~~~~~~~~~- 75 (524)
.+.+|+.+++.||+||||||++..+.....+..|.. -++-| |-.-....++=-+ +..|.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL-~l~Gi~ 105 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL-QLRGIE 105 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH-HhcCCC
Confidence 467999999999999999999999988765543321 22222 2222222211111 11111
Q ss_pred ---------cccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHH---HHHHH
Q 009842 76 ---------RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG---LVKRL 143 (524)
Q Consensus 76 ---------~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~---~l~~i 143 (524)
+.-..||. +. .....|.-.+.|+-++.-+.+...-+.+++.+||.- -.+|.-.... ++-.+
T Consensus 106 k~~R~~~a~q~l~~VgL----~~--~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf-gAlDa~tRe~mQelLldl 178 (259)
T COG4525 106 KAQRREIAHQMLALVGL----EG--AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF-GALDALTREQMQELLLDL 178 (259)
T ss_pred HHHHHHHHHHHHHHhCc----cc--ccccceEeecchHHHHHHHHHHhhcCcceEeecCch-hhHHHHHHHHHHHHHHHH
Confidence 01112221 11 123457778999999998888889999999999976 3333322222 22222
Q ss_pred HhhcccCcEEEEEeccCChH
Q 009842 144 VNLRASKLKILITSATLDGE 163 (524)
Q Consensus 144 ~~~~~~~~~ii~~SATl~~~ 163 (524)
-.. .+.++++.|+.+...
T Consensus 179 w~~--tgk~~lliTH~ieEA 196 (259)
T COG4525 179 WQE--TGKQVLLITHDIEEA 196 (259)
T ss_pred HHH--hCCeEEEEeccHHHH
Confidence 222 367889988887644
No 375
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.94 E-value=7.4e-06 Score=82.50 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=46.8
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
+.-.+.|+.++..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 129 ~~~LSgGqkqRvalAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPL-AALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3447889999999888899999999999998 788888766655555443332 45677766654
No 376
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=7.3e-06 Score=77.69 Aligned_cols=137 Identities=21% Similarity=0.259 Sum_probs=80.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc----------------hhH--HHHHHHHHH---HHhCC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR----------------RVA--AVSVARRVA---QELGV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~----------------r~l--a~~~~~~~~---~~~~~ 75 (524)
+.+|+.+.|.||+||||||++..+........|...+...+. ..+ ...+.+.+. ...+.
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 468999999999999999999988887655444322211110 000 001111111 00000
Q ss_pred c----------ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 76 R----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 76 ~----------~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
. ....+| .. ...+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+...+..
T Consensus 102 ~~~~~~~~~~~~l~~~~----l~--~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 102 DKKEIERKVLEIAEMLG----ID--HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF-SALDVRTKEKLREELKK 174 (235)
T ss_pred CHHHHHHHHHHHHHHcC----Ch--hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc-ccCCHHHHHHHHHHHHH
Confidence 0 000000 00 0012334457889999998888899999999999998 78888877665555544
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
.... +..+|+.|+-+
T Consensus 175 ~~~~~~~tili~tH~~ 190 (235)
T cd03299 175 IRKEFGVTVLHVTHDF 190 (235)
T ss_pred HHHhcCCEEEEEecCH
Confidence 3322 56677776654
No 377
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00011 Score=79.35 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=80.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC-cEE-EEcc-cchhHHHHHHHHHHHHhCCcccceEeEEeecccccCccc
Q 009842 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (524)
Q Consensus 19 ~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~-~~i-~~~~-P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 95 (524)
.+++++++||||+||||.+..+........+ .++ ++.. +.|+.+.++.+.+++.++..+.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----------------- 246 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----------------- 246 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-----------------
Confidence 4678999999999999888777765532223 233 4433 4567677777777777664321
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHh
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~ 166 (524)
.+.++..+...+. .+.+.++|+||=+- |+....-+...+..+.....+.-.++++|||...+.+.
T Consensus 247 --~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 --AVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --ccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 1125555555544 35578999999998 55544445555666654444466788999998665443
No 378
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.93 E-value=1.6e-05 Score=84.41 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch-hHHHHHHH-H---HHHHhC----CcccceEeEEeec
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR-VAAVSVAR-R---VAQELG----VRLGEEVGYAIRF 87 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r-~la~~~~~-~---~~~~~~----~~~~~~vg~~~~~ 87 (524)
+.+|+.+.|+||+||||||++..+.....+..|...+-..+.. .......+ . +.+... ..+.+.+.+....
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 113 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK 113 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc
Confidence 5689999999999999999999998876554443322221110 00000000 0 000000 0000000000000
Q ss_pred c----c-----------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009842 88 E----D-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 88 ~----~-----------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (524)
. . ....+..+.-.+.|+..+..+...++.+.+++++||+- ..+|......+.+.+......+..
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~t 192 (510)
T PRK15439 114 RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT-ASLTPAETERLFSRIRELLAQGVG 192 (510)
T ss_pred chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCE
Confidence 0 0 00112334557899999999888899999999999988 788887766655555443333456
Q ss_pred EEEEeccC
Q 009842 153 ILITSATL 160 (524)
Q Consensus 153 ii~~SATl 160 (524)
+|+.|+-+
T Consensus 193 iiivtHd~ 200 (510)
T PRK15439 193 IVFISHKL 200 (510)
T ss_pred EEEEeCCH
Confidence 66666554
No 379
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.93 E-value=6.2e-06 Score=82.91 Aligned_cols=141 Identities=22% Similarity=0.280 Sum_probs=81.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC--CcEEEEcccc------h----------hH--HHHHHHHHHHHh---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTK--SGIIGVTQPR------R----------VA--AVSVARRVAQEL--- 73 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~--~~~i~~~~P~------r----------~l--a~~~~~~~~~~~--- 73 (524)
+..|+.+.+.||+||||||++..+........ |...+-..+. + .+ ...+.+.++-.+
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 56899999999999999999999998776654 4322211110 0 00 001111111000
Q ss_pred CCccc---ceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc
Q 009842 74 GVRLG---EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (524)
Q Consensus 74 ~~~~~---~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~ 147 (524)
+.... ..+. ..+..+. ..+....-.+.|+.++..+...++.+.+++++||.- ..+|......+...+....
T Consensus 108 ~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 108 KMPKADIAERVADALKLVGLGD--AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL-SALDANIRANMREEIAALH 184 (362)
T ss_pred CCCHHHHHHHHHHHHHhcCCCc--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHH
Confidence 00000 0000 0000010 012334458899999999999999999999999998 7888887666555554443
Q ss_pred cc--CcEEEEEeccC
Q 009842 148 AS--KLKILITSATL 160 (524)
Q Consensus 148 ~~--~~~ii~~SATl 160 (524)
.. +..+|+.|+-+
T Consensus 185 ~~~~g~til~vTHd~ 199 (362)
T TIGR03258 185 EELPELTILCVTHDQ 199 (362)
T ss_pred HhCCCCEEEEEeCCH
Confidence 32 45677766554
No 380
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.92 E-value=6.3e-06 Score=82.67 Aligned_cols=141 Identities=22% Similarity=0.273 Sum_probs=80.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch----------------hH--HHHHHHHHHHHh---CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------VA--AVSVARRVAQEL---GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r----------------~l--a~~~~~~~~~~~---~~ 75 (524)
+..|+.+.|.||+||||||++..+.....+..|...+-..+.. .+ -..+.+.++-.+ +.
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM 106 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC
Confidence 4689999999999999999999999877665443322111100 00 001111111000 00
Q ss_pred ccc---ceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc
Q 009842 76 RLG---EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (524)
Q Consensus 76 ~~~---~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~ 149 (524)
... ..+. .....+. ..+....-.+.|+.++..+....+.+.+++++||+- ..+|......+...+.+...+
T Consensus 107 ~~~~~~~~~~~~l~~l~L~~--~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLPG--SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL-SALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCCc--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHh
Confidence 000 0000 0000000 012334457899999999999999999999999998 788887766655444443321
Q ss_pred -CcEEEEEeccC
Q 009842 150 -KLKILITSATL 160 (524)
Q Consensus 150 -~~~ii~~SATl 160 (524)
+..+|+.|+-+
T Consensus 184 ~~~tvi~vTHd~ 195 (353)
T TIGR03265 184 LGVTTIMVTHDQ 195 (353)
T ss_pred cCCEEEEEcCCH
Confidence 56677766554
No 381
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.92 E-value=5.4e-05 Score=71.41 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 142 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 142 YPHELSGGQRQRVAIARALALNPKLLIADEPT-SALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEecCCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34457889999988888899999999999998 788888766655555444332 45666666654
No 382
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.92 E-value=4.1e-05 Score=72.35 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=49.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~~~~~~~~~ 169 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+ +.+..+.
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~--~~~~~~~ 193 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPT-TDLDVVNQARVLKLLRELRQLFGTGILLITHDL--GVVARIA 193 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-cccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 44557889998888888889999999999998 788888766655555444332 44566655543 3444443
No 383
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.91 E-value=1.9e-05 Score=87.55 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=82.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcccceEeEE---e-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYA---I- 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~~~~vg~~---~- 85 (524)
+.+|+.+.|+||+||||||++..++....+.+|...+-..+.+.... ++.+.++ +. +...+.+.+.+. .
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~ 581 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIP 581 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCC
Confidence 56899999999999999999999998877766554443333222111 1111110 00 000000000000 0
Q ss_pred -----------eccc---ccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 86 -----------RFED---RTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 86 -----------~~~~---~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
..++ ..+. ++.+ .-.+.|..+|..+.+..+++.+++|+||+- ..+|...-..+.+.+.+
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt-S~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT-SALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc-ccCCHHHHHHHHHHHHh
Confidence 0000 0000 0111 237889999999999999999999999998 68888877776666654
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
. +..+|+.|+-+
T Consensus 661 --~-~~T~IiitHrl 672 (710)
T TIGR03796 661 --R-GCTCIIVAHRL 672 (710)
T ss_pred --c-CCEEEEEecCH
Confidence 2 56677776654
No 384
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.91 E-value=1.9e-05 Score=76.39 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=84.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-hhHHHHHHHHH---HHHhC----CcccceEeEE---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRV---AQELG----VRLGEEVGYA--- 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-r~la~~~~~~~---~~~~~----~~~~~~vg~~--- 84 (524)
.+.+|+.+.|+||+||||||++..+........|...+-..+. ..........+ .+... ..+...+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP 108 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccc
Confidence 3568999999999999999999999887665544332222111 00000110111 00000 0000000000
Q ss_pred e--------ec-ccc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 85 I--------RF-EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 85 ~--------~~-~~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
. .. ... ...+..+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~L~ 187 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT-TWLDISHQIDLLELLS 187 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 0 00 000 0012345567889999988888899999999999998 7888887666555554
Q ss_pred hhcc-cCcEEEEEeccCChHHHhhhc
Q 009842 145 NLRA-SKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 145 ~~~~-~~~~ii~~SATl~~~~~~~~~ 169 (524)
.... .+..+|+.|+-+ +.+.++.
T Consensus 188 ~l~~~~~~tiii~tH~~--~~~~~~~ 211 (265)
T PRK10253 188 ELNREKGYTLAAVLHDL--NQACRYA 211 (265)
T ss_pred HHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 4332 145667766554 3344443
No 385
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=8.5e-05 Score=73.84 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=48.0
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccCC
Q 009842 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SATl~ 161 (524)
-.+.|+.++..+....+.+.+++|+||+- ..+|......+++.+..... .+..+|+.|+-++
T Consensus 153 ~LSgGq~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPT-TALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999999998899999999999998 78888877666555555433 2567777776654
No 386
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.90 E-value=6.3e-05 Score=72.16 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=47.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+..... .+..+|+.|+-+
T Consensus 145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT-GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34457889999998888899999999999997 78888776665555544322 156677776654
No 387
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.90 E-value=4.2e-05 Score=77.38 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=80.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccch----------------hH--HHHHHHHHHHH---hCC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------VA--AVSVARRVAQE---LGV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r----------------~l--a~~~~~~~~~~---~~~ 75 (524)
+.+|+.+.|.||+||||||++..+.....+..|...+-..+.. .+ ...+.+.+.-. .+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~ 105 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC
Confidence 5689999999999999999999999876554443222111100 00 00111111100 000
Q ss_pred cc----------cceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 76 RL----------GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 76 ~~----------~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.. ...+| ... ..+..+.-.+.|+.++..+....+.+.+++++||+- ..+|......+...+..
T Consensus 106 ~~~~~~~~~~~~l~~lg----L~~--~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt-s~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 106 KKEEINQRVNQVAEVLQ----LAH--LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISR 178 (369)
T ss_pred CHHHHHHHHHHHHHHcC----Chh--hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 00 00000 000 012334458899999999999999999999999998 78888876665444443
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
...+ +..+|+.|+-+
T Consensus 179 l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 179 LHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHHhCCEEEEEeCCH
Confidence 3321 46677776654
No 388
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.90 E-value=8.9e-05 Score=79.50 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=81.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---H---HhCCcccceEeEE-----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---Q---ELGVRLGEEVGYA----- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~---~---~~~~~~~~~vg~~----- 84 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..+.+.. ..+..+.++ + .++..+... +..
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~~~~~~~~ 424 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-GKPANPAL 424 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-cCchHHHH
Confidence 468999999999999999999999887766555443333332211 001111100 0 000000000 000
Q ss_pred -------eecccccC-ccc--ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEE
Q 009842 85 -------IRFEDRTS-ERT--LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (524)
Q Consensus 85 -------~~~~~~~~-~~~--~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~i 153 (524)
........ .+. .=.-.+.|..+|..+.+..+++.+++|+||+- ..+|......+.+.+..... .+..+
T Consensus 425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~~tv 503 (547)
T PRK10522 425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA-ADQDPHFRREFYQVLLPLLQEMGKTI 503 (547)
T ss_pred HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 00000000 000 00236889999999999999999999999998 78888776665555543322 25677
Q ss_pred EEEeccC
Q 009842 154 LITSATL 160 (524)
Q Consensus 154 i~~SATl 160 (524)
|+.|+-+
T Consensus 504 i~itH~~ 510 (547)
T PRK10522 504 FAISHDD 510 (547)
T ss_pred EEEEech
Confidence 7777764
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00013 Score=75.40 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=70.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC-C-cEEEE-cccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-S-GIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE 93 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~-~-~~i~~-~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~ 93 (524)
+..|++++++||||+||||++..+........ + ...++ .-+.+..+.++.+...+.++..+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--------------- 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--------------- 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE---------------
Confidence 45789999999999999988877765433221 2 23333 344566555544444333322110
Q ss_pred ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHh
Q 009842 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~ 166 (524)
...+++.+...+. .+.++++||||.+- ++.........+..+..... ...+++++++.....+.
T Consensus 412 ----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 ----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQ-VTSLLVLPANAHFSDLD 475 (559)
T ss_pred ----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhc-CCcEEEEECCCChhHHH
Confidence 0113344444443 24579999999998 33333333333444433333 45688889987654433
No 390
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.89 E-value=0.00013 Score=68.35 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=46.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH-HHhhc-ccCcEEEEEeccCC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR-LVNLR-ASKLKILITSATLD 161 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~-i~~~~-~~~~~ii~~SATl~ 161 (524)
.+.-.+.|+..+..+...++.+.+++++||+- ..+|......+++. ++... ..+..+|+.|+-++
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPF-SALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 34568899999999988899999999999998 67888766665542 33322 22466777776653
No 391
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.89 E-value=4.2e-05 Score=74.04 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=45.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
...-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 148 ~~~~LS~Ge~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAV-SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred CCccCChHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 34457889999988888899999999999998 788887665544444433321 45677766654
No 392
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.88 E-value=6.7e-05 Score=72.04 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=46.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 137 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLCEAPFIIADEPT-TDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 34557899999999888899999999999998 788887765554444433221 45677766654
No 393
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.88 E-value=2.7e-05 Score=86.18 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=82.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHH--------------HHHh--CCccc-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRV--------------AQEL--GVRLG- 78 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~--------------~~~~--~~~~~- 78 (524)
+.+|+.+.|+||+||||||++..++....+..|...+-..|.+.... ++.+.+ .+.. +....
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENV 576 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCC
Confidence 46899999999999999999999988877665544443333222111 111111 0000 00000
Q ss_pred ---------ceEeEEeecccccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHH
Q 009842 79 ---------EEVGYAIRFEDRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (524)
Q Consensus 79 ---------~~vg~~~~~~~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i 143 (524)
...|-. .+-...+. ++.+ .-.+.|..++..+.+..+++.+++|+||+- ..+|......+.+.+
T Consensus 577 ~~~~i~~a~~~a~l~-~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T-s~LD~~te~~i~~~L 654 (708)
T TIGR01193 577 SQDEIWAACEIAEIK-DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST-SNLDTITEKKIVNNL 654 (708)
T ss_pred CHHHHHHHHHHhCCH-HHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHH
Confidence 000000 00000000 1111 226899999999999999999999999998 688888766666666
Q ss_pred HhhcccCcEEEEEeccCC
Q 009842 144 VNLRASKLKILITSATLD 161 (524)
Q Consensus 144 ~~~~~~~~~ii~~SATl~ 161 (524)
.. .. +..+|+.|+-++
T Consensus 655 ~~-~~-~~T~IiitHr~~ 670 (708)
T TIGR01193 655 LN-LQ-DKTIIFVAHRLS 670 (708)
T ss_pred HH-hc-CCEEEEEecchH
Confidence 54 33 556677766653
No 394
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.87 E-value=6.9e-05 Score=67.32 Aligned_cols=153 Identities=24% Similarity=0.311 Sum_probs=93.6
Q ss_pred CchHHHHHHHHH----hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEccc-chhHHHHHHHHHHHHhCCcc--
Q 009842 5 PILQYEETIVET----VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQELGVRL-- 77 (524)
Q Consensus 5 pi~~~~~~i~~~----l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P-~r~la~~~~~~~~~~~~~~~-- 77 (524)
|..+.++.++.. +.+++.+.|.|.+|+||||++..+......+.|.+.+-.+- ++....+-|..+++-+....
T Consensus 13 ~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~g 92 (263)
T COG1101 13 KGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAG 92 (263)
T ss_pred CCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhC
Confidence 444555666664 46899999999999999999999999888776654432221 44444444444443332111
Q ss_pred -----------------cceEeEEeecccc--------c---------CcccceeecchHHHHHHHHhCCCCCCCceEEE
Q 009842 78 -----------------GEEVGYAIRFEDR--------T---------SERTLIKYLTDGVLLREILSNPDLSPYSVIIL 123 (524)
Q Consensus 78 -----------------~~~vg~~~~~~~~--------~---------~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIi 123 (524)
|..-|+....... . .-..++-..+.|..+....-...+...+++.+
T Consensus 93 t~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL 172 (263)
T COG1101 93 TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172 (263)
T ss_pred CcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 1111111100000 0 01356777888877766665567889999999
Q ss_pred eCCCcCCCChH---HHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 124 DEAHERSLNTD---ILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 124 DE~H~~~~~~~---~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
|| |-..+|.. +.+..-.++.... ++..++.++.+
T Consensus 173 DE-HTAALDPkta~~vm~lT~kiV~~~--klTtlMVTHnm 209 (263)
T COG1101 173 DE-HTAALDPKTAEFVMELTAKIVEEH--KLTTLMVTHNM 209 (263)
T ss_pred cc-hhhcCCcchHHHHHHHHHHHHHhc--CCceEEEeccH
Confidence 99 54556654 4555556666654 57777777765
No 395
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.87 E-value=0.00034 Score=68.97 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=70.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc-cchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccce
Q 009842 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 19 ~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~-P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 97 (524)
.+++++++||+|+||||.+..+.......++...++.. +.+..+.++....+...+..+ ... .. ..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~------~~~-~~--~~---- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV------IAQ-KE--GA---- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceE------EEe-CC--CC----
Confidence 46789999999999998887777765543333444443 446666555555555554321 100 00 00
Q ss_pred eecchHHH-HHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc------ccCcEEEEEeccCChH
Q 009842 98 KYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR------ASKLKILITSATLDGE 163 (524)
Q Consensus 98 ~~~T~g~l-~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~------~~~~~ii~~SATl~~~ 163 (524)
.|... ...+ ......++++||||=+. +....+.++.-++.+.+.. .+.-.++.++||...+
T Consensus 180 ---dpa~~v~~~l-~~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 180 ---DPASVAFDAI-QAAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred ---CHHHHHHHHH-HHHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 11111 1111 11134679999999998 5544444434455544321 1255789999997543
No 396
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.86 E-value=1e-05 Score=81.14 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=80.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----------------H--HHHHHHHHHHHhCCc--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------A--AVSVARRVAQELGVR-- 76 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----------------l--a~~~~~~~~~~~~~~-- 76 (524)
+.+|+.+.|.||+||||||++..++.......|...+-..+... + ...+.+.+.......
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~ 104 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR 104 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc
Confidence 56899999999999999999999998776654433221111000 0 001111111000000
Q ss_pred -ccc-------eEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 77 -LGE-------EVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 77 -~~~-------~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.+. .+. ..+.... ..+..+.-.+.|+.++..+....+.+.+++++||+- ..+|......+.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 105 RERPNAAAIKAKVTQLLEMVQLAH--LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF-GALDAQVRKELRRWLRQ 181 (353)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCch--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHH
Confidence 000 000 0000000 012334457899999999998899999999999998 78888876665554444
Q ss_pred hccc-CcEEEEEeccC
Q 009842 146 LRAS-KLKILITSATL 160 (524)
Q Consensus 146 ~~~~-~~~ii~~SATl 160 (524)
.... +..+|+.|+-+
T Consensus 182 l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 182 LHEELKFTSVFVTHDQ 197 (353)
T ss_pred HHHhcCCEEEEEeCCH
Confidence 3332 45666665544
No 397
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.85 E-value=4.8e-05 Score=73.53 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=45.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+...... +..+|+.|+.+
T Consensus 147 ~~~~LSgGe~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 147 LPRQLSGGQLQRINIARALAVKPKLIVLDEAV-SNLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 34457889998888888889999999999997 788887765555544443322 45666666654
No 398
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.85 E-value=2.1e-05 Score=75.90 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=47.8
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccCC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SATl~ 161 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... .+..+|+.|+-++
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPI-ASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEEEecCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44457889999988888889999999999998 78888877665555544332 1466777776654
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.85 E-value=7.7e-05 Score=75.19 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=83.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc-----------------cc-hh-HHHHHHHHHHHHhCCc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-----------------PR-RV-AAVSVARRVAQELGVR 76 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~-----------------P~-r~-la~~~~~~~~~~~~~~ 76 (524)
.+..|+.+.|+||.||||||+...+.....+..|..-+-.. |- .+ -.-.+++.+++.-...
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 35689999999999999999999998866555443222111 10 00 0001122221111000
Q ss_pred ------------------ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHH
Q 009842 77 ------------------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (524)
Q Consensus 77 ------------------~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~ 138 (524)
....-||.......- .-.+.|..+|..+.+.+..+..+||+||.. .++|.+--..
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG~P~lvVLDEPN-sNLD~~GE~A 510 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYGDPFLVVLDEPN-SNLDSEGEAA 510 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcCCCcEEEecCCC-CCcchhHHHH
Confidence 000112221111110 115788999999999999999999999998 6788887777
Q ss_pred HHHHHHhhcccCcEEEEEeccC
Q 009842 139 LVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 139 ~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.+.+...+..+..+|+.++-+
T Consensus 511 L~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 511 LAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred HHHHHHHHHHcCCEEEEEecCH
Confidence 7777777776677777776654
No 400
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.6e-05 Score=74.67 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=47.2
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPT-ANLDPENTAKIESLFLELKK-DMTIVLVTHFP 205 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 34558899999999888899999999999998 78888876665555554433 55666666654
No 401
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.85 E-value=0.00011 Score=73.06 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=47.8
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccCC
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl~ 161 (524)
.-.+.|+.++..+....+.+.+++|+||+- ..+|......+++.+.....+ +..+|+.|.-++
T Consensus 160 ~~LSgG~~QRv~IArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPT-TALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 347899999999999999999999999998 788888776655555444332 567777776654
No 402
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.85 E-value=5.1e-05 Score=81.44 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=84.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcccceEeEE----
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYA---- 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~~~~vg~~---- 84 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+-..+.+.... +..+.++ +. +...+.......
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 443 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLD 443 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHH
Confidence 356899999999999999999999988777665554443333222111 1111110 00 000000000000
Q ss_pred --------eecccc---cCc--ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh-cccC
Q 009842 85 --------IRFEDR---TSE--RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-RASK 150 (524)
Q Consensus 85 --------~~~~~~---~~~--~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~-~~~~ 150 (524)
...++. .+. ++ ..-.+.|..+|..+.+..+.+.+++|+||+- ..+|......+.+.++.. ...+
T Consensus 444 ~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~ 521 (555)
T TIGR01194 444 NAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWA-ADQDPAFKRFFYEELLPDLKRQG 521 (555)
T ss_pred HHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCC
Confidence 000000 000 11 1347889999999999999999999999998 788888777665555432 1225
Q ss_pred cEEEEEeccC
Q 009842 151 LKILITSATL 160 (524)
Q Consensus 151 ~~ii~~SATl 160 (524)
..+|+.|+-+
T Consensus 522 ~tiiiisH~~ 531 (555)
T TIGR01194 522 KTIIIISHDD 531 (555)
T ss_pred CEEEEEeccH
Confidence 6777777754
No 403
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.85 E-value=0.00021 Score=68.79 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=46.3
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 145 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~ 207 (258)
T PRK14241 145 PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC-SALDPISTLAIEDLINELKQ-DYTIVIVTHNM 207 (258)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 34558899999999888899999999999998 78888776665554444333 45566665544
No 404
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=6.5e-06 Score=83.21 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=79.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc-----------------hhH-HHHHHHHHHHHh---CC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-----------------RVA-AVSVARRVAQEL---GV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~-----------------r~l-a~~~~~~~~~~~---~~ 75 (524)
+..|+.+.|.||+||||||++..+........|...+-..+. ... -..+.+.++-.+ +.
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 121 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL 121 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 568999999999999999999999987765544322111100 000 001111111000 00
Q ss_pred ccc---ceEe---EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-
Q 009842 76 RLG---EEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (524)
Q Consensus 76 ~~~---~~vg---~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~- 148 (524)
... ..+. ..+.... ..+....-.+.|..++..+......+.+++++||.- ..+|......+...+.+...
T Consensus 122 ~~~~~~~~v~~~l~~l~L~~--~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~ 198 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQE--FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM-GALDKKLRDRMQLEVVDILER 198 (377)
T ss_pred CHHHHHHHHHHHHHHcCCch--hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh
Confidence 000 0000 0000000 012234458899999999999999999999999998 78888876654443333222
Q ss_pred cCcEEEEEeccC
Q 009842 149 SKLKILITSATL 160 (524)
Q Consensus 149 ~~~~ii~~SATl 160 (524)
.+..+|+.|+-.
T Consensus 199 ~g~tii~vTHd~ 210 (377)
T PRK11607 199 VGVTCVMVTHDQ 210 (377)
T ss_pred cCCEEEEEcCCH
Confidence 156677765543
No 405
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=3e-05 Score=74.37 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=46.2
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..-.+.|...+..+....+.+.+++|+||+. ..+|......+.+.+..... +..+|+.|+-+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 208 (253)
T PRK14267 147 PSNLSGGQRQRLVIARALAMKPKILLMDEPT-ANIDPVGTAKIEELLFELKK-EYTIVLVTHSP 208 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 3447888888888888889999999999998 78888877666555555433 45566666544
No 406
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.84 E-value=6.4e-05 Score=72.31 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=45.7
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+... ..+..+|+.|.-++
T Consensus 155 ~~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~ 216 (257)
T cd03288 155 ENFSVGQRQLFCLARAFVRKSSILIMDEAT-ASIDMATENILQKVVMTA-FADRTVVTIAHRVS 216 (257)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHh-cCCCEEEEEecChH
Confidence 357889999998888899999999999998 788887765544444433 23566777666554
No 407
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.84 E-value=2.9e-05 Score=74.01 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=45.1
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEID-SGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 7899999998888899999999999998 78888877665555554433245566665544
No 408
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=9.3e-05 Score=71.66 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=45.7
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.-.+.|+..+..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~ 213 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPC-SALDPISTLKIEETMHELKK-NFTIVIVTHNM 213 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 4457889999988888899999999999998 78888876665555544433 45566655543
No 409
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.84 E-value=7.6e-05 Score=75.25 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=57.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccceee
Q 009842 21 PVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (524)
Q Consensus 21 ~~~ii~~pTGsGKTt~l~~~l~~~-~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~ 99 (524)
.+++|.|..|||||.++..++... ....+..++++.+...+...+.+.+.+... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 468999999999998877777765 122345666666767777666666654430 00111122
Q ss_pred cchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCC
Q 009842 100 LTDGVLLREI-LSNPDLSPYSVIILDEAHERSLN 132 (524)
Q Consensus 100 ~T~g~l~~~l-~~~~~l~~~~~iIiDE~H~~~~~ 132 (524)
..+..+.... .......++++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 2333332222 233467889999999999 4444
No 410
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.83 E-value=3.1e-05 Score=85.53 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=84.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHH--------------HHHhCCc---cc
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRV--------------AQELGVR---LG 78 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~--------------~~~~~~~---~~ 78 (524)
+.+|+.+.|+|++||||||++..++....+.+|...+-..+.+.... ++.+.+ .+..... ..
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~ 559 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAP 559 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCC
Confidence 46899999999999999999999998877665544433333221111 111110 0110000 00
Q ss_pred --------ceEeEE-------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHH
Q 009842 79 --------EEVGYA-------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (524)
Q Consensus 79 --------~~vg~~-------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i 143 (524)
...|-. ...+.... ..-.-.+.|..++..+.+..+++.+++|+||+- ..+|.+....+.+.+
T Consensus 560 ~~~i~~a~~~~~l~~~i~~lp~gl~t~i~--~~g~~LSgGq~qri~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l 636 (694)
T TIGR01846 560 FEHVIHAAKLAGAHDFISELPQGYNTEVG--EKGANLSGGQRQRIAIARALVGNPRILIFDEAT-SALDYESEALIMRNM 636 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcCccCcEec--CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHH
Confidence 000000 00000000 111237889999999999999999999999998 788888777766666
Q ss_pred HhhcccCcEEEEEeccC
Q 009842 144 VNLRASKLKILITSATL 160 (524)
Q Consensus 144 ~~~~~~~~~ii~~SATl 160 (524)
....+ +..+|+.|+-+
T Consensus 637 ~~~~~-~~t~i~itH~~ 652 (694)
T TIGR01846 637 REICR-GRTVIIIAHRL 652 (694)
T ss_pred HHHhC-CCEEEEEeCCh
Confidence 55543 66777777655
No 411
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.83 E-value=2.4e-05 Score=75.07 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=46.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+.++
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETD-SGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 7899999998888899999999999997 788888777655555444332566777776543
No 412
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=2.6e-05 Score=74.84 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+.++
T Consensus 147 ~~~~LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPT-SALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 45568899999998888899999999999998 78888877665555554433 556666666543
No 413
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=5.4e-05 Score=68.82 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=39.4
Q ss_pred CCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 114 DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 114 ~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
.+-++++.|+||.+ ..+|.|.+..+-+.+-..+.++.-+++.|+. ..+.+|.
T Consensus 159 ~~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liITHy---~rll~~i 210 (251)
T COG0396 159 LLLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIITHY---QRLLDYI 210 (251)
T ss_pred HhcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEecH---HHHHhhc
Confidence 45678999999999 7999998888777776666667777777654 3455555
No 414
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.82 E-value=4.1e-05 Score=81.41 Aligned_cols=64 Identities=22% Similarity=0.131 Sum_probs=47.6
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+...++.+.+++++||+- ..+|......+.+.+......+..+|+.|+.+
T Consensus 142 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 142 KVANLSISHKQMLEIAKTLMLDAKVIIMDEPT-SSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34458899999999988899999999999998 78888876665555544333345677766654
No 415
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.81 E-value=0.00012 Score=78.17 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CC-CCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~---~~-~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~ 83 (524)
..|+..+.....+..++|.|+.|+||||.+..++.... .. .+.+|.++.||.-++..+.+.+...... ....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~-l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN-LAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc-cccc---
Confidence 35666666777789999999999999987766654321 11 1247889999988888777766443210 0000
Q ss_pred EeecccccCcccceeecchHHHHHHH-------HhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEE
Q 009842 84 AIRFEDRTSERTLIKYLTDGVLLREI-------LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (524)
Q Consensus 84 ~~~~~~~~~~~~~i~~~T~g~l~~~l-------~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~ 156 (524)
........+...|--.++... ........+++|||||+- +++...+..+++ ..+.+.|+|++
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~----al~~~~rlIlv 292 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLK----ALPPNTKLILL 292 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHH----hcCCCCEEEEE
Confidence 000000001112222221110 011123368999999996 566665444443 34447888876
Q ss_pred ec
Q 009842 157 SA 158 (524)
Q Consensus 157 SA 158 (524)
-=
T Consensus 293 GD 294 (586)
T TIGR01447 293 GD 294 (586)
T ss_pred CC
Confidence 53
No 416
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.81 E-value=0.00016 Score=79.45 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=77.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC-CcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~-~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
..+...|.+.+..+..++.++|.|+.|+||||++..++......+ ...++...|+.-++..+ .+..|.... ++.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~~a~-Tih 396 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL----GEVTGLTAS-TIH 396 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH----HHhcCCccc-cHH
Confidence 445677888888888899999999999999998887766443322 15678889988777544 333332110 000
Q ss_pred EEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
++-.. .++..... ........++|||||++ +++...+..+++ ..+.+.++|++--.
T Consensus 397 ---~lL~~----------~~~~~~~~--~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~----~~~~~~rlilvGD~ 452 (720)
T TIGR01448 397 ---RLLGY----------GPDTFRHN--HLEDPIDCDLLIVDESS--MMDTWLALSLLA----ALPDHARLLLVGDT 452 (720)
T ss_pred ---HHhhc----------cCCccchh--hhhccccCCEEEEeccc--cCCHHHHHHHHH----hCCCCCEEEEECcc
Confidence 00000 00000000 00112457899999999 466655544443 34457888887544
No 417
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.81 E-value=0.00023 Score=68.15 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=47.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
...-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+.+... +..+|+.|+-+
T Consensus 144 ~~~~LS~Gq~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~ 206 (251)
T PRK14251 144 NAQAFSGGQQQRICIARALAVRPKVVLLDEPT-SALDPISSSEIEETLMELKH-QYTFIMVTHNL 206 (251)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC-ccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH
Confidence 34457888888888888889999999999998 78888877666555555433 55667766654
No 418
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.81 E-value=7.2e-05 Score=71.64 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=49.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
.+.-.+.|+..+..+....+.+.+++++||+. ..+|......+.+.+..... +..+|+.|.-+ +.+..+.
T Consensus 143 ~~~~LS~Gq~qr~~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~--~~~~~~~ 212 (250)
T PRK14262 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPT-SALDPIATQRIEKLLEELSE-NYTIVIVTHNI--GQAIRIA 212 (250)
T ss_pred ChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH--HHHHHhC
Confidence 34457888888888888899999999999998 78888877665555554433 45566655543 3344443
No 419
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.81 E-value=0.00026 Score=61.13 Aligned_cols=141 Identities=19% Similarity=0.206 Sum_probs=80.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh----HHHHHHHHHHHH---hCCcccceEe--EEee
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----AAVSVARRVAQE---LGVRLGEEVG--YAIR 86 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~----la~~~~~~~~~~---~~~~~~~~vg--~~~~ 86 (524)
++..|+.+.|.||.||||||++.+++....++.|...+-..|-.. .-.|....+++. +|..+....- |..+
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r 104 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR 104 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHh
Confidence 456899999999999999999999998888776665554554322 223333333322 2322222111 1111
Q ss_pred cccccC----------------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH---HHHHHHHHHhhc
Q 009842 87 FEDRTS----------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKRLVNLR 147 (524)
Q Consensus 87 ~~~~~~----------------~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~---~~~~l~~i~~~~ 147 (524)
...... -...+.-++.|..++..+.+...-..+++.+||.. ..+|..- ...++.++.+
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T-sALD~~nkr~ie~mi~~~v~-- 181 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT-SALDESNKRNIEEMIHRYVR-- 181 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch-hhcChhhHHHHHHHHHHHhh--
Confidence 111000 02345557778777776655556667899999987 4555443 3444444443
Q ss_pred ccCcEEEEEecc
Q 009842 148 ASKLKILITSAT 159 (524)
Q Consensus 148 ~~~~~ii~~SAT 159 (524)
+.+.-++-.++.
T Consensus 182 ~q~vAv~WiTHd 193 (223)
T COG4619 182 EQNVAVLWITHD 193 (223)
T ss_pred hhceEEEEEecC
Confidence 335555555544
No 420
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=7.2e-05 Score=73.27 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=47.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+..... .+..+|+.|+.+
T Consensus 147 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPT-GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 34558899999999888899999999999998 78888876665554444332 145667766654
No 421
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.80 E-value=4.8e-05 Score=73.64 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=45.3
Q ss_pred ceeecchHHHHHHHHhCCCC---------CCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDL---------SPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l---------~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+ .+.+++++||+- ..+|......+++.+...... +..+|+.|+.+
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT-AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 34457888888888777766 489999999998 788887766655555443332 45677777654
No 422
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.80 E-value=2.3e-05 Score=83.09 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=84.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh-HHHHHH-HHH---HHHh----CCcccceEeEE--
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVA-RRV---AQEL----GVRLGEEVGYA-- 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~-la~~~~-~~~---~~~~----~~~~~~~vg~~-- 84 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+...+... ...... +.+ .+.. ...+.+.+.+.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 105 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE 105 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence 356899999999999999999999988776554443332221100 000000 000 0000 00111111000
Q ss_pred -------eecc---cc-----------cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHH
Q 009842 85 -------IRFE---DR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (524)
Q Consensus 85 -------~~~~---~~-----------~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i 143 (524)
.... .. ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l 184 (501)
T PRK10762 106 FVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT-DALTDTETESLFRVI 184 (501)
T ss_pred cccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-CCCCHHHHHHHHHHH
Confidence 0000 00 0012334558899999999988899999999999988 788887766655544
Q ss_pred HhhcccCcEEEEEeccCChHHHhhhc
Q 009842 144 VNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 144 ~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
......+..+|+.|+- .+.+..+.
T Consensus 185 ~~l~~~~~tvii~sHd--~~~~~~~~ 208 (501)
T PRK10762 185 RELKSQGRGIVYISHR--LKEIFEIC 208 (501)
T ss_pred HHHHHCCCEEEEEeCC--HHHHHHhC
Confidence 4433334556666654 34444443
No 423
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.80 E-value=4.5e-05 Score=70.24 Aligned_cols=144 Identities=22% Similarity=0.233 Sum_probs=80.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHH---HHHhCCcccceE----eEEeec
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRV---AQELGVRLGEEV----GYAIRF 87 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~---~~~~~~~~~~~v----g~~~~~ 87 (524)
.+.+|+.++++||.||||||.+.++.....++.|.+.+...+.+.. ...+-+++ -+..|.....++ ......
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 3578999999999999999999988887777766655555443321 22222221 122222211111 100000
Q ss_pred ccccCc------------------cc---ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH---HHHHHHHH
Q 009842 88 EDRTSE------------------RT---LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKRL 143 (524)
Q Consensus 88 ~~~~~~------------------~~---~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~---~~~~l~~i 143 (524)
..+... .. -=--.+.|.-+|.-..+....+..++.+||.- -.+|.-. +...++.+
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF-gALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF-GALDPITRKQLQEEIKEL 181 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc-cccChhhHHHHHHHHHHH
Confidence 000000 00 00014566666666666677889999999987 4455433 33335555
Q ss_pred HhhcccCcEEEEEeccCCh
Q 009842 144 VNLRASKLKILITSATLDG 162 (524)
Q Consensus 144 ~~~~~~~~~ii~~SATl~~ 162 (524)
.+.. +..+|+.|+-++.
T Consensus 182 q~~l--~kTivfVTHDidE 198 (309)
T COG1125 182 QKEL--GKTIVFVTHDIDE 198 (309)
T ss_pred HHHh--CCEEEEEecCHHH
Confidence 4444 5778999888764
No 424
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.5e-05 Score=74.23 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=45.7
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.-.+.|+..+..+...++.+.+++++||+- ..+|......++..+..... +..+|+.|+-+
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~ 215 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPC-SALDPISTGRIEELITELKQ-DYTVVIVTHNM 215 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 4457889999988888899999999999998 78888776665555544433 45566666543
No 425
>PRK06526 transposase; Provisional
Probab=97.80 E-value=0.00016 Score=68.91 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=27.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~ 54 (524)
-+..++++++.||+|+|||+++..+...... .+..+.+
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~v~f 131 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-AGHRVLF 131 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHH-CCCchhh
Confidence 3457789999999999999887766654432 2344444
No 426
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=0.00026 Score=67.54 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=47.3
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 140 ~~~LS~G~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~ 201 (246)
T PRK14269 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPT-SALDPISSGVIEELLKELSH-NLSMIMVTHNM 201 (246)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 4457899999999888899999999999998 78888877665555554433 56667766654
No 427
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.79 E-value=0.00026 Score=75.08 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=52.2
Q ss_pred ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009842 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+-+ +.+.++
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~--~~~~~~ 462 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT-RGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL--PEVLGV 462 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC-CCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH--HHHHhh
Confidence 3456678999999999988899999999999998 78888887776555544433355677766544 334444
No 428
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.79 E-value=0.00016 Score=77.33 Aligned_cols=137 Identities=17% Similarity=0.238 Sum_probs=76.2
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEE
Q 009842 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (524)
Q Consensus 8 ~~~~~i~~~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~---~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~ 84 (524)
..|++.......+..++|.|++|+||||.+..++.... ......+.+..|+.-++..+.+.+...... . +
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~-~----~-- 227 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ-L----P-- 227 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc-c----c--
Confidence 34555555556788999999999999988776665431 112357888999998888877766443211 0 0
Q ss_pred eecccccCcccceeecchHHHHHHH-------HhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 85 IRFEDRTSERTLIKYLTDGVLLREI-------LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 85 ~~~~~~~~~~~~i~~~T~g~l~~~l-------~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
..............|--.++... .+......+++|||||+- +++...+..+++ ..+.+.++|++-
T Consensus 228 --~~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~----al~~~~rlIlvG 299 (615)
T PRK10875 228 --LTDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLID----ALPPHARVIFLG 299 (615)
T ss_pred --cchhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHH----hcccCCEEEEec
Confidence 00000000000011211111110 011123356899999997 566555544444 445578888875
Q ss_pred cc
Q 009842 158 AT 159 (524)
Q Consensus 158 AT 159 (524)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 43
No 429
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=6.8e-05 Score=76.25 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=84.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH-H------HHhCCcccceEeEEe----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-A------QELGVRLGEEVGYAI---- 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~-~------~~~~~~~~~~vg~~~---- 85 (524)
+.+|+.+.|+|++||||||++..++..... +|.+.+-.+..+....+-.++. + ..++..+-..+.|+-
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~LlrF~d~-sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas 453 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLLRFFDY-SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSAS 453 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHHhcc-CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcC
Confidence 568999999999999999999999887763 3333333333222211111110 0 000000000011100
Q ss_pred ------------------ecccc--cCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 86 ------------------RFEDR--TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 86 ------------------~~~~~--~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
++++. +.-..+=...+.|..++..+.+..+++..++++|||- ..+|.+.-..+++.+..
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT-S~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT-SALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc-cccchhhHHHHHHHHHH
Confidence 00000 0011223346888888988888899999999999998 78999988888888887
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
... +..+|+.-+-+
T Consensus 533 ~~~-~rTvI~IvH~l 546 (591)
T KOG0057|consen 533 VMS-GRTVIMIVHRL 546 (591)
T ss_pred hcC-CCeEEEEEecc
Confidence 554 66666655544
No 430
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=0.0003 Score=68.77 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=49.6
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+ +.+.+.++.
T Consensus 179 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt-~gLD~~~~~~l~~~L~~~~~-~~tvIivsH--~~~~~~~~~ 248 (286)
T PRK14275 179 NALGLSGGQQQRLCVARTLAVEPEILLLDEPT-SALDPKATAKIEDLIQELRG-SYTIMIVTH--NMQQASRVS 248 (286)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeC--CHHHHHHhC
Confidence 45568899999999888899999999999998 78888877765555544433 445555554 444444443
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.78 E-value=2.4e-05 Score=67.39 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=59.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHH---------------------------H
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVAR---------------------------R 68 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~---------------------------~ 68 (524)
+..|+.++|+|++||||||++..+........|...+.-.+.... .....+ .
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 568999999999999999999988876654333332322222221 011111 0
Q ss_pred HHHHhCCcccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCC
Q 009842 69 VAQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAH 127 (524)
Q Consensus 69 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H 127 (524)
+.+.++... . ....-+....-.+.|...+..+....+.+.+++|+||+-
T Consensus 88 ~l~~l~~~~---------~-~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 88 VLKKLGLED---------L-LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHTTHGG---------G-TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccccccccc---------c-cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 111111000 0 000011122568999999988888889999999999973
No 432
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.78 E-value=0.00016 Score=74.67 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=89.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHH---------hCCcccceEeE----
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE---------LGVRLGEEVGY---- 83 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~---------~~~~~~~~vg~---- 83 (524)
+.+|+.+.|+|++||||||+...++....+..|..++...+.... ..-.++.... .......+++.
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~-~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT-GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc-cchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 568999999999999999999999988877555455544441110 0000000000 00000011110
Q ss_pred Eeeccccc------------------Cc---ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 84 AIRFEDRT------------------SE---RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 84 ~~~~~~~~------------------~~---~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
........ +. ...---.+.|..+|..+...+..++.++|.||+- ..+|......+++.
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~-SaLDvsvqa~VlnL 471 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV-SALDVSVQAQVLNL 471 (539)
T ss_pred HHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc-cccCHHHHHHHHHH
Confidence 00000000 00 0001115777888888888889999999999998 67887776555544
Q ss_pred HHhhcc-cCcEEEEEeccCChHHHhhhcCCCCeeecCC
Q 009842 143 LVNLRA-SKLKILITSATLDGEKVSKFFSNCPTLNVPG 179 (524)
Q Consensus 143 i~~~~~-~~~~ii~~SATl~~~~~~~~~~~~~~~~i~~ 179 (524)
+...+. -+...++.|+-++ +-+++.+...+--.|
T Consensus 472 l~~lq~e~g~t~lfISHDl~---vV~~i~drv~vm~~G 506 (539)
T COG1123 472 LKDLQEELGLTYLFISHDLA---VVRYIADRVAVMYDG 506 (539)
T ss_pred HHHHHHHhCCEEEEEeCCHH---HHHhhCceEEEEECC
Confidence 444333 2688999999875 444554433333333
No 433
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.77 E-value=0.00026 Score=71.41 Aligned_cols=145 Identities=20% Similarity=0.209 Sum_probs=84.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH-----HHHhC----Ccccce--EeEE
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-----AQELG----VRLGEE--VGYA 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~-----~~~~~----~~~~~~--vg~~ 84 (524)
.+..|++-.+.|++|+||||++..+.....++.|.+.+-.+|.+.-.-.-|.+. .+.+. ..+.+. .|..
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 467899999999999999999999988887776655443333222111111110 01110 011000 0100
Q ss_pred e------e--------------cccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 85 I------R--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 85 ~------~--------------~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
. . +.-....+..+--.|-|.-++.-+-..++.+.+++|+||.- ..+...-...++..+.
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPT-aVLTP~E~~~lf~~l~ 184 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPT-AVLTPQEADELFEILR 184 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHH
Confidence 0 0 00011223445556777666665556678899999999987 5555555555555555
Q ss_pred hhcccCcEEEEEeccCC
Q 009842 145 NLRASKLKILITSATLD 161 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~ 161 (524)
.....+..+|+.|+-++
T Consensus 185 ~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 185 RLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHCCCEEEEEeccHH
Confidence 55556888999998874
No 434
>PLN03232 ABC transporter C family member; Provisional
Probab=97.77 E-value=5e-05 Score=90.19 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=84.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccceEeEE--ee
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGYA--IR 86 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~vg~~--~~ 86 (524)
.+.+|+.+.|+|+|||||||++..++....+.+|.+.+-..+.+... .++.++++ ++ +...+.+.+.+. ..
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~s 1337 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN 1337 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCC
Confidence 35689999999999999999999988877776665555455533221 22222221 00 000000000000 00
Q ss_pred ------------cc---cccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 87 ------------FE---DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 87 ------------~~---~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
.. ...+. ++.+ .-.+.|..++..+.+..+++.+++|+||+- ..+|...-..+.+.+.+
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT-SaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT-ASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00 00000 1111 126789999999999999999999999998 67887765554444444
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+|..++-+
T Consensus 1417 ~~~-~~TvI~IAHRl 1430 (1495)
T PLN03232 1417 EFK-SCTMLVIAHRL 1430 (1495)
T ss_pred HcC-CCEEEEEeCCH
Confidence 443 77788777766
No 435
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.77 E-value=0.0097 Score=72.20 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=132.6
Q ss_pred CCCchHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccce
Q 009842 3 NLPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (524)
Q Consensus 3 ~lpi~~~~~~i~~~l~~--~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~ 80 (524)
.+++..-|.+.+..+.. +++.+|.|+.|+||||.+..+...... .|..|....|+.-++..+.+.. |..-...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~-~G~~V~~lAPTgrAA~~L~e~~----g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASE-QGYEIQIITAGSLSAQELRQKI----PRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHh----cchhhhH
Confidence 45667777777777655 479999999999999988877654433 4668888899887776655432 2211000
Q ss_pred EeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.. +....... ...-|...++ .....+..-++|||||+- +++...+..+++.... .+.++|++-=+-
T Consensus 502 ~~----~l~~l~~~--~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~---~garvVlvGD~~ 567 (1960)
T TIGR02760 502 IT----WVKNLFND--DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ---HNSKLILLNDSA 567 (1960)
T ss_pred HH----HHHhhccc--ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh---cCCEEEEEcChh
Confidence 00 00000000 0011111121 122345678999999998 5777666665554432 368888876542
Q ss_pred --Ch----HHHhhhcC-CCCeeecCC---cccceeEEecCCCCcchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHH
Q 009842 161 --DG----EKVSKFFS-NCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (524)
Q Consensus 161 --~~----~~~~~~~~-~~~~~~i~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~ 230 (524)
++ ..|..+.. +.+...... ...++ ........+.........+.+. ......+|+.++.++...+.
T Consensus 568 QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~--~~r~~tliv~~t~~dr~~Ln 643 (1960)
T TIGR02760 568 QRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLT--PDRQNSQVLATTHREQQDLT 643 (1960)
T ss_pred hcCccccchHHHHHHHCCCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhcc--cccCceEEEcCCcHHHHHHH
Confidence 21 23332221 234433322 11222 1111112222223333333322 23446999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEEecC-CCCHHHHhcccCCCCCC
Q 009842 231 SKLEDKIRSLDEGSCMDAVILPLHG-SLPPEMQVRVFSPPPPN 272 (524)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~v~~~f~~g 272 (524)
..++..+...+.-......+..+.. .|+..++... ..|+.|
T Consensus 644 ~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 644 QIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9999887543332223444444443 5666666533 344433
No 436
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.76 E-value=0.00018 Score=68.77 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=45.5
Q ss_pred ecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 99 ~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 47899999999988899999999999998 78888876665554443333245667766654
No 437
>PRK13409 putative ATPase RIL; Provisional
Probab=97.76 E-value=7.8e-05 Score=80.03 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=82.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE------Ecccch-hHHHHHHHHHHHHhC-CcccceEe---EEe
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG------VTQPRR-VAAVSVARRVAQELG-VRLGEEVG---YAI 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~------~~~P~r-~la~~~~~~~~~~~~-~~~~~~vg---~~~ 85 (524)
+..|+.+.|.||+||||||++..+.....+..|...+ +.|... .....+.+.+..... ......+. ...
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 5689999999999999999999998877655443321 111100 000011111111000 00000000 000
Q ss_pred ecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 86 ~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
... ...+..+.-.+.|..++..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|+-+
T Consensus 442 ~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 442 QLE--RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS-AHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred CCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 011 1123456668999999999999899999999999988 788888776655555443321 45566666543
No 438
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.00032 Score=75.64 Aligned_cols=111 Identities=22% Similarity=0.203 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCCCCCceEEEE
Q 009842 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (524)
Q Consensus 199 ~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ilv 278 (524)
+.+..+...+ ..+.|+||-..+.+..+.+.+.|.+. ++.-..+.+.-...+-..+-..-..| -|-+
T Consensus 417 Aiv~~I~~~~--~~gqPvLvgT~sie~SE~ls~~L~~~----------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTi 482 (822)
T COG0653 417 AIVEDIKERH--EKGQPVLVGTVSIEKSELLSKLLRKA----------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTI 482 (822)
T ss_pred HHHHHHHHHH--hcCCCEEEcCcceecchhHHHHHHhc----------CCCceeeccccHHHHHHHHhhcCCCC--cccc
Confidence 3444444444 45679999999999999999999865 33333344444344444444333333 5789
Q ss_pred ecCccccccCCC---Cee--------EEEeCCcccceeecCCCCccccceeeecHHhHHhhccccCCC-CCCeEE
Q 009842 279 STNIAETSLTVD---GVV--------YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCY 341 (524)
Q Consensus 279 aT~i~e~gidip---~v~--------~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 341 (524)
|||+|++|-||- +.. +||-+.... |+.-=.|-.||+||. -||..-
T Consensus 483 ATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE------------------SRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 483 ATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHE------------------SRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred ccccccCCcccccCCCHHHHHHhCCcEEEecccch------------------hhHHHHHhhcccccCCCcchhh
Confidence 999999999983 221 333322221 222223999999999 577543
No 439
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.76 E-value=2.6e-05 Score=82.42 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=81.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh--HHHHHHHHH---HHHh----CCcccceEeEE---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRV---AQEL----GVRLGEEVGYA--- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~--la~~~~~~~---~~~~----~~~~~~~vg~~--- 84 (524)
+.+|+.+.|+||+||||||++..+.....+..|...+-..+... ......+.+ .+.. +..+...+.+.
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 100 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP 100 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc
Confidence 56899999999999999999999988765544433322222100 000000000 0000 00010000000
Q ss_pred -----eeccc--------------ccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 -----IRFED--------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 -----~~~~~--------------~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
..... ....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 101 TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT-SSLTEKEVNHLFTIIRK 179 (491)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 00000 00112334557889999999888889999999999998 78888876665555444
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
....+..+|+.|+.+
T Consensus 180 l~~~g~tvii~tH~~ 194 (491)
T PRK10982 180 LKERGCGIVYISHKM 194 (491)
T ss_pred HHhCCCEEEEEecCH
Confidence 333355677766554
No 440
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.76 E-value=1.8e-05 Score=82.72 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=85.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-------EEcc-----cchhHHHHHHH----------HHHHHh-
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-------GVTQ-----PRRVAAVSVAR----------RVAQEL- 73 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i-------~~~~-----P~r~la~~~~~----------~~~~~~- 73 (524)
+..|+.++|.||+|||||+++..+.+.-++..|... ++++ |...+..+++- .+.+.+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~ 495 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHH
Confidence 568999999999999999999999887766544322 2221 11111111100 000000
Q ss_pred CCcccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEE
Q 009842 74 GVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (524)
Q Consensus 74 ~~~~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~i 153 (524)
....+..++ +.+.. ..-=.+.|+|..++....+-.+++++++|+||+- ..+|.+....+...+....| +..+
T Consensus 496 ~vgL~~L~~---rl~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT-sALDe~~e~~l~q~l~~~lp-~~tv 567 (604)
T COG4178 496 KVGLGDLAE---RLDEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT-SALDEETEDRLYQLLKEELP-DATV 567 (604)
T ss_pred HcCcHHHHH---HHhcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch-hccChHHHHHHHHHHHhhCC-CCEE
Confidence 001111111 11111 1112357999999999999999999999999998 67888887777777766666 8888
Q ss_pred EEEeccCC
Q 009842 154 LITSATLD 161 (524)
Q Consensus 154 i~~SATl~ 161 (524)
|-.++...
T Consensus 568 ISV~Hr~t 575 (604)
T COG4178 568 ISVGHRPT 575 (604)
T ss_pred EEeccchh
Confidence 87776654
No 441
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.76 E-value=6.5e-05 Score=78.72 Aligned_cols=140 Identities=20% Similarity=0.249 Sum_probs=84.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE--------EEEcccchhH--HHHHHHHHHHHhCCcc-cceEeEE
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI--------IGVTQPRRVA--AVSVARRVAQELGVRL-GEEVGYA 84 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~--------i~~~~P~r~l--a~~~~~~~~~~~~~~~-~~~vg~~ 84 (524)
.+..|+.+.|+||+|+||||++..++.......|.. ..+-|-...+ -..+...+.+...... ...-++-
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 356899999999999999999999977665543321 1222322111 0112222322221100 0000000
Q ss_pred eecc-cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 85 IRFE-DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 85 ~~~~-~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
-++. ........|...+.|...|+++..-.+.+..++|+||+- ..+|.+.+.. |...+... +-.+|+.|+-
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT-NhLDi~s~~a-Le~aL~~f--~Gtvl~VSHD 495 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT-NHLDIESLEA-LEEALLDF--EGTVLLVSHD 495 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC-ccCCHHHHHH-HHHHHHhC--CCeEEEEeCC
Confidence 0010 011124567789999999999988899999999999998 7889988877 44555444 3457887764
No 442
>PRK13409 putative ATPase RIL; Provisional
Probab=97.75 E-value=0.00025 Score=76.16 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=48.9
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
..+.-.+.|+.++..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 208 ~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt-s~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 208 RDISELSGGELQRVAIAAALLRDADFYFFDEPT-SYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 445568899999999888899999999999987 67888776665555544443 566777776653
No 443
>PLN03130 ABC transporter C family member; Provisional
Probab=97.75 E-value=5.1e-05 Score=90.40 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=84.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhH-HHHHHHHHH---HH---h------CCcccce--
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVA---QE---L------GVRLGEE-- 80 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~l-a~~~~~~~~---~~---~------~~~~~~~-- 80 (524)
.+..|+.+.|+|+|||||||++..++......+|.+.+-..+.+.. ..++-++++ +. + +...+..
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~t 1340 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN 1340 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCC
Confidence 3568999999999999999999988887776665554444443222 111111111 00 0 0000000
Q ss_pred ----------EeEEeecccccCc--ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 81 ----------VGYAIRFEDRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 81 ----------vg~~~~~~~~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
++-. .+-...+. ++.| .-.+.|..++..+.+..+++.+++|+||+- ..+|...-..+.+.+.
T Consensus 1341 deei~~Al~~a~l~-~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT-SaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1341 DADLWESLERAHLK-DVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT-AAVDVRTDALIQKTIR 1418 (1622)
T ss_pred HHHHHHHHHHcCcH-HHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHH
Confidence 0000 00000000 1111 136889999999999999999999999998 6788776555445554
Q ss_pred hhcccCcEEEEEeccCC
Q 009842 145 NLRASKLKILITSATLD 161 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~ 161 (524)
+..+ +..+|..++-++
T Consensus 1419 ~~~~-~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1419 EEFK-SCTMLIIAHRLN 1434 (1622)
T ss_pred HHCC-CCEEEEEeCChH
Confidence 4444 677777777653
No 444
>PRK04296 thymidine kinase; Provisional
Probab=97.75 E-value=0.00012 Score=66.72 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccc---hhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccc
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR---RVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~---r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 96 (524)
|...++.||+|+||||.+..++..... .+.++++..|. +.... .+.+.+|.....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~----~i~~~lg~~~~~----------------- 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEG----KVVSRIGLSREA----------------- 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCC----cEecCCCCcccc-----------------
Confidence 567899999999999988888776543 35566655552 21111 111111211100
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
+.+.....+.+.+.. .-.++++|||||+|. ++.+.+.++++.+ .+.+..+++..
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq~--l~~~~v~~l~~~l---~~~g~~vi~tg 113 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQF--LDKEQVVQLAEVL---DDLGIPVICYG 113 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEcccc--CCHHHHHHHHHHH---HHcCCeEEEEe
Confidence 112344445554443 345789999999982 4444344433332 23355555543
No 445
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.75 E-value=0.00028 Score=74.89 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=48.7
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 399 ~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt-~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT-RGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred CccccCCcHHHHHHHHHHHHhhCCCEEEECCCC-cCcChhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 445668999999999888889999999999998 78888877665555544433356677766654
No 446
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.75 E-value=0.00029 Score=77.26 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcCCCCCCCeEEEEecCCCCHHHHhcccCCC----
Q 009842 194 TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP---- 269 (524)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~iLVF~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f---- 269 (524)
.+|.......+..+.. .+|.+|||++|.+..+.+++.|.... +..++ .++.. .+..+++.|
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~---------~~~ll-~Q~~~---~~~~ll~~f~~~~ 581 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL---------RLMLL-VQGDQ---PRQRLLEKHKKRV 581 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc---------CCcEE-EeCCc---hHHHHHHHHHHHh
Confidence 3466666666666665 44568999999999999999987541 22332 34543 344555444
Q ss_pred CCCceEEEEecCccccccCCCC--eeEEEeCCcccceeecCC----------CCccccc--eeeecHHhHHhhccccCCC
Q 009842 270 PPNCRRFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNPS----------SGMYSLD--VVQISKVQANQRVGRAGRT 335 (524)
Q Consensus 270 ~~g~~~ilvaT~i~e~gidip~--v~~VId~g~~k~~~~~~~----------~~~~~l~--~~~~s~~~~~QR~GRaGR~ 335 (524)
..|...|+++|..+..|||+|+ .+.||-.++|-..--||. .|-..+. ..|-....+.|-+||.=|.
T Consensus 582 ~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs 661 (697)
T PRK11747 582 DEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRS 661 (697)
T ss_pred ccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcccccc
Confidence 4567789999999999999987 789998888854221211 1111111 1122344578999999997
Q ss_pred C--CCeEEEe
Q 009842 336 R--PGKCYRL 343 (524)
Q Consensus 336 ~--~G~~~~l 343 (524)
. .|..+.+
T Consensus 662 ~~D~G~i~il 671 (697)
T PRK11747 662 EQDRGRVTIL 671 (697)
T ss_pred CCceEEEEEE
Confidence 3 4665544
No 447
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.75 E-value=5.5e-05 Score=73.30 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=47.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++++||+- .++|......+.+.+..... +..+|+.|.-+
T Consensus 164 ~~~~LSgGe~qrv~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~ 226 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPT-SALDPISTLKVEELVQELKK-DYSIIIVTHNM 226 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH
Confidence 34457889999988888889999999999998 78888877665555544433 55667766654
No 448
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=6.3e-05 Score=72.76 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=46.2
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~ 222 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPA-SALDPISTMQLEETMFELKK-NYTIIIVTHNM 222 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 4457889999988888889999999999998 78888876665555544433 55666666544
No 449
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.74 E-value=4.8e-05 Score=72.70 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=45.5
Q ss_pred ceeecchHHHHHHHHhCCCCC-------CCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 96 LIKYLTDGVLLREILSNPDLS-------PYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~-------~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.+.-.+.|+..+..+....+. +.+++++||+- ..+|......+.+.+......+..+|+.|+.++
T Consensus 123 ~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~ 194 (248)
T PRK03695 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM-NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN 194 (248)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 344578888888887777665 67999999998 788888766655544443333566777777654
No 450
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00048 Score=69.42 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--EEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccce
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i--~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 97 (524)
+..++++||||+||||++..++.......+.++ +-.-+.|..+..+.++.++..+.....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~------------------ 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP------------------ 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeee------------------
Confidence 467889999999999988888764422223333 334456777777777777666543210
Q ss_pred eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc---ccCcEEEEEeccCChHHH
Q 009842 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR---ASKLKILITSATLDGEKV 165 (524)
Q Consensus 98 ~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~---~~~~~ii~~SATl~~~~~ 165 (524)
......+...+. -.++++|+||=+. +.......+.-+..+.... ...-.++++|||...+.+
T Consensus 285 -~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 -VKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred -hHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 001223333332 2578999999877 4433333333355555432 113578889999966443
No 451
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=4e-05 Score=74.37 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=49.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
.+.-.+.|+..+..+...++.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-+ +.+..+
T Consensus 158 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~--~~~~~~ 226 (274)
T PRK14265 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPC-SALDPISTRQVEELCLELKE-QYTIIMVTHNM--QQASRV 226 (274)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH--HHHHHh
Confidence 34457889999998888899999999999998 78888877776555555443 45566655543 344444
No 452
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=0.00047 Score=66.37 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=49.7
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
...-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... ...+|+.|.-+ +.+..+.
T Consensus 147 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~--~~i~~~~ 216 (259)
T PRK14260 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPC-SALDPIATMKVEELIHSLRS-ELTIAIVTHNM--QQATRVS 216 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH--HHHHHhc
Confidence 44568899999988888889999999999998 78888877665555555443 45556655543 3444443
No 453
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00012 Score=70.95 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=47.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
...-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|..+
T Consensus 165 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~ 227 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT-SALDPISTLKIEELITELKS-KYTIVIVTHNM 227 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH
Confidence 34557889999999888899999999999998 78888876665555554433 55666666554
No 454
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00029 Score=74.48 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=51.7
Q ss_pred ccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009842 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 94 ~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+ +.+..+
T Consensus 386 ~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt-~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~--~~~~~~ 457 (491)
T PRK10982 386 RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT-RGIDVGAKFEIYQLIAELAKKDKGIIIISSEM--PELLGI 457 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC-cccChhHHHHHHHHHHHHHHCCCEEEEECCCh--HHHHhh
Confidence 3455668999999999998899999999999987 78888877776555544333355666666544 334444
No 455
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.0015 Score=56.80 Aligned_cols=181 Identities=23% Similarity=0.320 Sum_probs=98.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc---ccchhHHHHHHHH--H-HHHhC-------------Cc
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT---QPRRVAAVSVARR--V-AQELG-------------VR 76 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~---~P~r~la~~~~~~--~-~~~~~-------------~~ 76 (524)
.+..|+++.|+|+.||||||++..+.....++.+...... +|+......-+++ + ..+.| ..
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS 107 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS 107 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence 3568999999999999999999999888777666544433 3444433333332 1 11222 11
Q ss_pred ccceEeEE-----------eecc------cccCcccc----eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHH
Q 009842 77 LGEEVGYA-----------IRFE------DRTSERTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (524)
Q Consensus 77 ~~~~vg~~-----------~~~~------~~~~~~~~----i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~ 135 (524)
.|..+|.. ++.. .......+ -.-.+.|+-+++-+.+.......++.+||.. -.++-..
T Consensus 108 AG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT-GGLDVSV 186 (258)
T COG4107 108 AGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT-GGLDVSV 186 (258)
T ss_pred cCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC-CCcchhh
Confidence 22223210 0000 00000001 1124678888887888889999999999987 5666554
Q ss_pred ---HHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcCCCCeeecCCcccc--eeEEecCCCCcchHHHHHH
Q 009842 136 ---LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYP--VEILHSKERPTSYLESALK 202 (524)
Q Consensus 136 ---~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~~~~~~~~i~~~~~~--v~~~~~~~~~~~~~~~~~~ 202 (524)
++.+++.+.... ++-+++.++.+. .+..+.+...+--.++..+ .......++...|-.-.+.
T Consensus 187 QARLLDllrgLv~~l--~la~viVTHDl~---VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 187 QARLLDLLRGLVREL--GLAVVIVTHDLA---VARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred HHHHHHHHHHHHHhc--CceEEEEechhH---HHHHhhhcceeecCCCEeccccccccccCCCCchHHHHHH
Confidence 455555555544 567777776654 3334433333333333222 2223344455555444333
No 456
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.72 E-value=3e-05 Score=82.13 Aligned_cols=144 Identities=25% Similarity=0.242 Sum_probs=81.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchh--HHHHHHHHH---HHHh----CCcccceEeE---
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRV---AQEL----GVRLGEEVGY--- 83 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~--la~~~~~~~---~~~~----~~~~~~~vg~--- 83 (524)
.+.+|+.+.|+||+||||||++..+.....+..|...+-..+... ......+.+ .+.. +..+...+.+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 105 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQL 105 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccc
Confidence 356899999999999999999999988765544433222111100 000000000 0000 0000000000
Q ss_pred ----E-eec-c-------------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 84 ----A-IRF-E-------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 84 ----~-~~~-~-------------~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
. ... + -....+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~ 184 (501)
T PRK11288 106 PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPT-SSLSAREIEQLFRVIR 184 (501)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCHHHHHHHHHHHH
Confidence 0 000 0 000012334457899999999888899999999999998 7888887666555554
Q ss_pred hhcccCcEEEEEeccC
Q 009842 145 NLRASKLKILITSATL 160 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl 160 (524)
.....+..+|+.|+-+
T Consensus 185 ~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 185 ELRAEGRVILYVSHRM 200 (501)
T ss_pred HHHhCCCEEEEEeCCH
Confidence 4433355677766654
No 457
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00036 Score=69.57 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=47.8
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc-cCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~-~~~~ii~~SATl 160 (524)
..-.+.|+.++..+...++.+.+++|+||+- ..+|......+++.+..... .+..+|+.|+-+
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPT-NAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3357899999999999999999999999998 78888776665555544333 256777777665
No 458
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=3.7e-05 Score=74.03 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=46.7
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 151 ~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPT-SALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 44557889999988888889999999999998 78888877665555544433 55666666544
No 459
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=3.9e-05 Score=73.64 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=46.1
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~ 208 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPA-SALDPIATQKIEELIHELKA-RYTIIIVTHNM 208 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH
Confidence 4457889999988888889999999999998 78888877665555554433 45566666544
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.00053 Score=70.82 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=73.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-EE--EEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcc
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-II--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~-~i--~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 94 (524)
..+.+++++||||+||||.+..+........+. ++ +..-+.|..+.++.+.+++.+|..+.. .
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~------------ 319 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V------------ 319 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c------------
Confidence 357889999999999998888777655333222 22 334456777878777777777643210 0
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHh
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~ 166 (524)
-++..+...+ ..+.+.++++||.+- ++.........+..+.......-.++.++||.....+.
T Consensus 320 -----~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 320 -----KDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred -----CCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 0111111111 245677899999987 44333323333333322221133688899998765544
No 461
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.71 E-value=0.0083 Score=67.94 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=79.2
Q ss_pred CCchHHHHHHHHHh-ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 4 LPILQYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~l-~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
+.+..-|.+.+..+ ..+...+|+|+.|+||||++..+..... ..+..++...|+--++..+ .+..|....
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e-~~G~~V~g~ApTgkAA~~L----~e~~Gi~a~---- 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWE-AAGYRVVGGALAGKAAEGL----EKEAGIQSR---- 450 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEcCcHHHHHHH----HHhhCCCee----
Confidence 45677788888776 4578899999999999998887665332 2356788889987776544 344443210
Q ss_pred EEeecccccCcccceeecchHHH-HHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEecc
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l-~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SAT 159 (524)
|-..+ ++.-.....+..-++|||||+. +++...+..+++.+.. .+.++|++-=+
T Consensus 451 ------------------TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~---~garvVLVGD~ 505 (1102)
T PRK13826 451 ------------------TLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR---AGAKLVLVGDP 505 (1102)
T ss_pred ------------------eHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh---cCCEEEEECCH
Confidence 11111 1110112246677899999998 5777766666555432 26788887644
No 462
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.71 E-value=6.1e-05 Score=80.04 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=48.5
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..+.-.+.|+..+..+....+.+..++|+||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPT-RGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCC-CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345568899999999888889999999999998 78888876665555544333356677776654
No 463
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=4.5e-05 Score=73.14 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=47.2
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+.+
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 207 (252)
T PRK14272 144 TPATGLSGGQQQRLCIARALAVEPEILLMDEPT-SALDPASTARIEDLMTDLKK-VTTIIIVTHNM 207 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 345568899999998888899999999999998 78888776665554444333 55666666654
No 464
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.71 E-value=7.3e-05 Score=88.97 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=82.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHH-HHHHHHH---HH---hCCcccceEe-EE-e--
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QE---LGVRLGEEVG-YA-I-- 85 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~-~~~~~~~---~~---~~~~~~~~vg-~~-~-- 85 (524)
++.|+.+.|+|+|||||||++..++.......|.+.+-..+.+.... ++.++++ ++ +...+...+. +. .
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sd 1388 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSD 1388 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCH
Confidence 56899999999999999999998888776665554444444322211 1111111 00 0000000000 00 0
Q ss_pred ----------eccc---ccC--cccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhh
Q 009842 86 ----------RFED---RTS--ERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (524)
Q Consensus 86 ----------~~~~---~~~--~~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~ 146 (524)
...+ ..+ -++.+ .-.+.|..++..+.+..+++.+++|+||+- ..+|...-..+.+.+.+.
T Consensus 1389 eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT-SalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1389 EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT-AAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHH
Confidence 0000 000 01111 126889999999999999999999999998 677877655544444444
Q ss_pred cccCcEEEEEeccC
Q 009842 147 RASKLKILITSATL 160 (524)
Q Consensus 147 ~~~~~~ii~~SATl 160 (524)
.+ +..+|..++=+
T Consensus 1468 ~~-~~TvI~IAHRl 1480 (1522)
T TIGR00957 1468 FE-DCTVLTIAHRL 1480 (1522)
T ss_pred cC-CCEEEEEecCH
Confidence 43 67777777655
No 465
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=0.00017 Score=71.66 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=46.7
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
....-.+.|...+..+.+..+.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt-s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l 284 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPT-SALDPIATAKIEELILELKK-KYSIIIVTHSM 284 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 344557899999999999999999999999998 78888776664444443333 55566655544
No 466
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.71 E-value=0.00036 Score=74.01 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=51.0
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+ +.+..+
T Consensus 391 ~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~--~~~~~~ 461 (501)
T PRK10762 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT-RGVDVGAKKEIYQLINQFKAEGLSIILVSSEM--PEVLGM 461 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-CCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHhh
Confidence 345568999999999988899999999999998 78888877665555544433355667766543 344444
No 467
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.70 E-value=0.00045 Score=73.27 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=49.9
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhh
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~ 168 (524)
..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+ +.+.++
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~--~~~~~~ 469 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT-RGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL--AEVLGL 469 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC-CCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH--HHHHHh
Confidence 445568999999999888889999999999988 78888776665444444333355677766644 344444
No 468
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=8.5e-05 Score=71.93 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=46.5
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|+.+
T Consensus 161 ~~~~LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~ 223 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLAMKPAVLLLDEPA-SALDPISNAKIEELITELKE-EYSIIIVTHNM 223 (268)
T ss_pred CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC-cccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH
Confidence 44558899999998888889999999999998 78888877665554444333 45566666654
No 469
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00025 Score=68.06 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=45.2
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHH---HHHHHhhcccCcEEEEEeccCC
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL---VKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~---l~~i~~~~~~~~~ii~~SATl~ 161 (524)
.+.|+.+|.+++-....+.+++|-||.- ..+|.-....+ ++.+.+. .+.-+|+.|+-+.
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPT-TALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~ 215 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPT-TALDVTVQAQILDLLKELQRE--KGTALILITHDLG 215 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCc-chhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHH
Confidence 6889999999998899999999999998 66776654444 4444442 3778899887664
No 470
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.69 E-value=8.4e-05 Score=87.69 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=46.9
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhc-ccCcEEEEEeccC
Q 009842 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATL 160 (524)
Q Consensus 100 ~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~-~~~~~ii~~SATl 160 (524)
.+.|..+|..+.+..+++..++|+||+- ..+|...-..+.+.+.... ..+..+|+.++-+
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaT-SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEAT-SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 6889999999999999999999999998 7788887666555555442 1266777777765
No 471
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=0.0001 Score=70.49 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
..-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... ...+|+.|.-+ +.+..+.
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~--~~~~~~~ 211 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPT-SALDPIATHKIEELMEELKK-NYTIVIVTHSM--QQARRIS 211 (249)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH--HHHHHhC
Confidence 3447888888888888889999999999998 78888776665554444333 45566666543 3444443
No 472
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=5.8e-05 Score=72.33 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=49.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
...-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... ...+|+.|.- .+.+..+.
T Consensus 144 ~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~--~~~~~~~~ 213 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPT-SALDPISTLKIEDLMVELKK-EYTIVIVTHN--MQQASRVS 213 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-CCeEEEEEcC--HHHHHHhc
Confidence 34557889988888888888999999999998 78888877666555544433 4556666554 33444443
No 473
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.69 E-value=0.00079 Score=58.41 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=84.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe-EE-----------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG-YA----------- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg-~~----------- 84 (524)
++.|+.+.|+||.||||||++..+........+...+..+|..-+-.+.-..+ .+..+|...- +.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~---R~~~vGfVFQSF~Lip~ltAlENV 109 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL---RARHVGFVFQSFHLIPNLTALENV 109 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh---hccceeEEEEeeeccccchhhhhc
Confidence 56899999999999999999998888887777777777877544433322222 2222211110 00
Q ss_pred -----eecccccCc-------------ccce----eecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 85 -----IRFEDRTSE-------------RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 85 -----~~~~~~~~~-------------~~~i----~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
...+..... ..++ .-.+.|.-+|..+.+.+...+++++-||.. -.+|...-..+..-
T Consensus 110 ~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPT-GNLD~~Tg~~iaDL 188 (228)
T COG4181 110 ALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPT-GNLDRATGDKIADL 188 (228)
T ss_pred cchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCC-CCcchhHHHHHHHH
Confidence 000000000 0000 115677778888888899999999999998 67777765555444
Q ss_pred HHhhcc-cCcEEEEEecc
Q 009842 143 LVNLRA-SKLKILITSAT 159 (524)
Q Consensus 143 i~~~~~-~~~~ii~~SAT 159 (524)
+..... ....+|+.++-
T Consensus 189 lF~lnre~G~TlVlVTHD 206 (228)
T COG4181 189 LFALNRERGTTLVLVTHD 206 (228)
T ss_pred HHHHhhhcCceEEEEeCC
Confidence 443332 24567776553
No 474
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=0.00013 Score=69.82 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
...-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+... ..+..+|+.|+-+
T Consensus 144 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~ 206 (251)
T PRK14249 144 SGLALSGGQQQRLCIARVLAIEPEVILMDEPC-SALDPVSTMRIEELMQEL-KQNYTIAIVTHNM 206 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 44457889999998888899999999999998 788887766654444333 2255667766654
No 475
>PTZ00243 ABC transporter; Provisional
Probab=97.68 E-value=7.8e-05 Score=88.67 Aligned_cols=142 Identities=16% Similarity=0.200 Sum_probs=83.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHH-HHHHHHHH---HH---hCCcccceEeE--E---
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QE---LGVRLGEEVGY--A--- 84 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la-~~~~~~~~---~~---~~~~~~~~vg~--~--- 84 (524)
+..|+.+.|+|+|||||||++..++.......|.+.+-..+.+... .++.+.++ ++ +...+...+.. .
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sd 1412 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASS 1412 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCH
Confidence 4689999999999999999999998877776665555555433221 11111111 00 00000000000 0
Q ss_pred ---------eeccc---ccCc--ccce----eecchHHHHHHHHhCCCCCC-CceEEEeCCCcCCCChHHHHHHHHHHHh
Q 009842 85 ---------IRFED---RTSE--RTLI----KYLTDGVLLREILSNPDLSP-YSVIILDEAHERSLNTDILLGLVKRLVN 145 (524)
Q Consensus 85 ---------~~~~~---~~~~--~~~i----~~~T~g~l~~~l~~~~~l~~-~~~iIiDE~H~~~~~~~~~~~~l~~i~~ 145 (524)
...++ ..+. ++.+ .-.+.|..+++.+.+..+++ ..++|+||+- ..+|...-..+.+.+..
T Consensus 1413 eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT-SaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1413 AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEAT-ANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC-ccCCHHHHHHHHHHHHH
Confidence 00000 0000 1111 12688999999999988985 8999999998 67887766665455544
Q ss_pred hcccCcEEEEEeccC
Q 009842 146 LRASKLKILITSATL 160 (524)
Q Consensus 146 ~~~~~~~ii~~SATl 160 (524)
..+ +..+|..++=+
T Consensus 1492 ~~~-~~TvI~IAHRl 1505 (1560)
T PTZ00243 1492 AFS-AYTVITIAHRL 1505 (1560)
T ss_pred HCC-CCEEEEEeccH
Confidence 444 66777777655
No 476
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.68 E-value=5.6e-05 Score=73.12 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=45.9
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~ 222 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPC-SALDPIATAKVEELIDELRQ-NYTIVIVTHSM 222 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH
Confidence 4457889999999888899999999999998 78888877665555544433 45566655543
No 477
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=7.6e-05 Score=71.63 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=46.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++++||+. ..+|......+.+.+..... +..+|+.|.-+
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~ 208 (253)
T PRK14261 146 SALSLSGGQQQRLCIARTLAVNPEVILMDEPC-SALDPIATAKIEDLIEDLKK-EYTVIIVTHNM 208 (253)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH
Confidence 34457888888888888889999999999998 78888876665554444333 45566666543
No 478
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.68 E-value=8.7e-05 Score=76.06 Aligned_cols=144 Identities=26% Similarity=0.241 Sum_probs=83.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHH-----HHHHhCC----------cccce
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-----VAQELGV----------RLGEE 80 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~-----~~~~~~~----------~~~~~ 80 (524)
.+..|++..++|++|+||||++..+.....++.|...+-..|.......-|+. +.+++.. .++..
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 46789999999999999999999999888776665544444332211111111 0111111 11111
Q ss_pred ----EeEEeecc--------------cccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHH
Q 009842 81 ----VGYAIRFE--------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (524)
Q Consensus 81 ----vg~~~~~~--------------~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~ 142 (524)
.|. +... .....++.+--.+.+..+-.-+.+....+.+++|+||+- .++...-...+++.
T Consensus 110 ~~~~~g~-id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPT-aaLt~~E~~~Lf~~ 187 (500)
T COG1129 110 PTRRFGL-IDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPT-AALTVKETERLFDL 187 (500)
T ss_pred cccCCCc-cCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHH
Confidence 110 0000 001123333334555544444566666789999999998 66666655555555
Q ss_pred HHhhcccCcEEEEEeccCC
Q 009842 143 LVNLRASKLKILITSATLD 161 (524)
Q Consensus 143 i~~~~~~~~~ii~~SATl~ 161 (524)
+.+.+..+.-+|+.|+-++
T Consensus 188 ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 188 IRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHHHHhCCCEEEEEcCcHH
Confidence 5555556899999999764
No 479
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.68 E-value=0.0003 Score=76.86 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=79.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-------EEEEc-ccchhHHHHHHHHH-------------------
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVT-QPRRVAAVSVARRV------------------- 69 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~-------~i~~~-~P~r~la~~~~~~~------------------- 69 (524)
+.+|+.+.|+||+||||||++..+.......+|. .+.++ |-.......+.+.+
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i 554 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDL 554 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHH
Confidence 4589999999999999999999988876554332 12221 11100000111111
Q ss_pred ---HHHhCCc--ccceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHH
Q 009842 70 ---AQELGVR--LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (524)
Q Consensus 70 ---~~~~~~~--~~~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~ 144 (524)
.+..+.. .....|+.. .. ....-.+.|+.++..+.+..+.+.+++|+||+- ..+|.+....+.+.+.
T Consensus 555 ~~~l~~~~l~~~~~~~~g~~~----~~---~~~~~LSgGqkQRl~iARal~~~p~illLDEpt-s~LD~~~~~~l~~~l~ 626 (659)
T TIGR00954 555 EQILDNVQLTHILEREGGWSA----VQ---DWMDVLSGGEKQRIAMARLFYHKPQFAILDECT-SAVSVDVEGYMYRLCR 626 (659)
T ss_pred HHHHHHcCCHHHHhhcCCccc----cc---ccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHH
Confidence 1111110 000011111 00 112348899999999999999999999999998 7888887666544443
Q ss_pred hhcccCcEEEEEeccCC
Q 009842 145 NLRASKLKILITSATLD 161 (524)
Q Consensus 145 ~~~~~~~~ii~~SATl~ 161 (524)
+ . +..+|+.|+-++
T Consensus 627 ~-~--~~tvI~isH~~~ 640 (659)
T TIGR00954 627 E-F--GITLFSVSHRKS 640 (659)
T ss_pred H-c--CCEEEEEeCchH
Confidence 2 2 556777776654
No 480
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.00062 Score=67.16 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=46.7
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..-++.|+..+..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPt-sgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~ 259 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPA-SALDPIATSKIEDLIEELAE-EYTVVVVTHNM 259 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH
Confidence 4458899999999888899999999999998 78888877765555554443 45566666544
No 481
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.67 E-value=0.00012 Score=75.01 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhccC-CEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHH
Q 009842 7 LQYEETIVETVEQN-PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (524)
Q Consensus 7 ~~~~~~i~~~l~~~-~~~ii~~pTGsGKT-t~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~ 69 (524)
...|.+++...... +..+|.||+|+||| |+...+..... ++.+|++..|+.+++..+.+++
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk--~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK--QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH--cCCeEEEEcCchHHHHHHHHHh
Confidence 45566666655444 78899999999999 55554444332 3679999999999998888764
No 482
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.0003 Score=64.28 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=85.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cccchhHHHHHHHHHHHHhC-------Cc----c-----c
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELG-------VR----L-----G 78 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~-~~P~r~la~~~~~~~~~~~~-------~~----~-----~ 78 (524)
.+.+|+.+.|+||.||||||++..+......+.|...+- .+++.....++- ++....| +- + .
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr-~~r~~iGmIfQ~~nLv~r~sv~~NVl~ 104 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR-KLRRDIGMIFQQFNLVPRLSVLENVLL 104 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH-HHHHhceeEeccCCcccccHHHHHHHh
Confidence 357899999999999999999999888666555543332 233333322221 1111111 00 0 0
Q ss_pred ceEeEEeeccc---ccC-------------------cccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHH
Q 009842 79 EEVGYAIRFED---RTS-------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL 136 (524)
Q Consensus 79 ~~vg~~~~~~~---~~~-------------------~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~ 136 (524)
...||...+.. ..+ .-.+.--.+.|..+|..+++.+.++.+++.-||+- .++|...-
T Consensus 105 grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv-asLDp~~a 183 (258)
T COG3638 105 GRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV-ASLDPESA 183 (258)
T ss_pred hhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc-cccChhhH
Confidence 01111111000 000 01223337899999999999999999999999987 67776654
Q ss_pred HHHHHHHHhhcc-cCcEEEEEeccCChHHHhhhc
Q 009842 137 LGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 137 ~~~l~~i~~~~~-~~~~ii~~SATl~~~~~~~~~ 169 (524)
..++..+..... .+..+|+-.++++ ...+|+
T Consensus 184 ~~Vm~~l~~in~~~g~Tvi~nLH~vd--lA~~Y~ 215 (258)
T COG3638 184 KKVMDILKDINQEDGITVIVNLHQVD--LAKKYA 215 (258)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHH--HHHHHH
Confidence 444433333222 2577777766664 344555
No 483
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00019 Score=69.19 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
..-.+.|+..+..+...++.+.+++++||+- ..+|......+++.+..... +..+|+.|.-+ +.+.++.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPt-sgLD~~~~~~l~~~l~~~~~-~~tii~isH~~--~~i~~~~ 215 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPC-SALDPIATRRVEELMVELKK-DYTIALVTHNM--QQAIRVA 215 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH--HHHHHhC
Confidence 3457899999998888899999999999998 78888877776665555433 55566655544 3344443
No 484
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.66 E-value=0.00065 Score=74.92 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=76.8
Q ss_pred CCchHHHHHHHHHhcc-CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEe
Q 009842 4 LPILQYEETIVETVEQ-NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (524)
Q Consensus 4 lpi~~~~~~i~~~l~~-~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg 82 (524)
..+...|.+.+..+.. ++.++|.|+.|+||||++..+...... .+..++.+.|+-.++..+. +..|...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~ApTg~Aa~~L~----~~~g~~a----- 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGAALSGKAAEGLQ----AESGIES----- 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEeCcHHHHHHHH----hccCCce-----
Confidence 4566777778887765 578999999999999988877644332 3567888899877765543 2223210
Q ss_pred EEeecccccCcccceeecchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEe
Q 009842 83 YAIRFEDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (524)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~T~g~l~~~l-~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~S 157 (524)
.|-..++..+ .....+.+.++|||||+- +++...+..+++.... .+.++|++-
T Consensus 421 -----------------~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~---~~~kliLVG 474 (744)
T TIGR02768 421 -----------------RTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE---AGAKVVLVG 474 (744)
T ss_pred -----------------eeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh---cCCEEEEEC
Confidence 0111111111 112246788999999997 5666666555544332 267777775
No 485
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=5e-05 Score=80.61 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=47.5
Q ss_pred cceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 95 ~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 139 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 139 TPVGNLGLGQQQLVEIAKALNKQARLLILDEPT-ASLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 345568899999999988899999999999988 67888776665555544433345566666544
No 486
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00058 Score=65.59 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+...++.+.+++++||+- ..+|......+...+..... +..+|+.|.-+
T Consensus 150 ~~~~LS~G~~qrl~laral~~~P~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~ 212 (257)
T PRK14246 150 PASQLSGGQQQRLTIARALALKPKVLLMDEPT-SMIDIVNSQAIEKLITELKN-EIAIVIVSHNP 212 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH
Confidence 34457889999988888899999999999998 78888876665554444333 56666666543
No 487
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.65 E-value=0.0012 Score=62.47 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=69.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccceeec
Q 009842 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (524)
Q Consensus 21 ~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~~ 100 (524)
..+++.|++|+|||+++..++...... +..++++. +.++...+...+. . .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it-----~~~l~~~l~~~~~-~---------------~~------~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIIT-----VADIMSAMKDTFS-N---------------SE------T 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-----HHHHHHHHHHHHh-h---------------cc------c
Confidence 578999999999998887777665432 44444442 2233333322220 0 00 1
Q ss_pred chHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhcCC
Q 009842 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (524)
Q Consensus 101 T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~~~ 171 (524)
+...+++. +.+++++||||++. ...+++...++-.++..+-.+.+-+++|--++.+.+.+.+++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~-~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGV-QTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCC-CCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 22222222 45799999999995 335666666777777766533444555666777777776654
No 488
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00013 Score=79.51 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=80.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-------EE-Ecccc-hhHH--HHHHHHHHHHhCCc----ccce
Q 009842 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-------IG-VTQPR-RVAA--VSVARRVAQELGVR----LGEE 80 (524)
Q Consensus 16 ~l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~-------i~-~~~P~-r~la--~~~~~~~~~~~~~~----~~~~ 80 (524)
.+..|+.+.|+||+||||||++..++....+..|.. +. +.+.. ..+. ..+...+....... +...
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 356899999999999999999999998776544432 11 12211 0000 01111111000000 0000
Q ss_pred EeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 81 vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+ ...+.. ......+...+.|...+..+....+.+.+++|+||+- ..+|......+...+.. .. . .+|+.|+-.
T Consensus 414 L~-~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt-~~LD~~~~~~l~~~L~~-~~-g-tvi~vSHd~ 487 (638)
T PRK10636 414 LG-GFGFQG-DKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT-NHLDLDMRQALTEALID-FE-G-ALVVVSHDR 487 (638)
T ss_pred HH-HcCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHH-cC-C-eEEEEeCCH
Confidence 00 000100 0123456668999999999988899999999999987 78888887775555544 33 3 566666543
No 489
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00079 Score=58.79 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=88.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-----cccch-----hHHHHHHHHHHH-------HhCCccc--
Q 009842 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-----TQPRR-----VAAVSVARRVAQ-------ELGVRLG-- 78 (524)
Q Consensus 18 ~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~-----~~P~r-----~la~~~~~~~~~-------~~~~~~~-- 78 (524)
..|+++-|+|..||||||++..+-....+..|.+.+- +.|.+ ..-..+.+++.. .++....
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmt 109 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMT 109 (256)
T ss_pred CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHH
Confidence 5789999999999999999999887766654443321 22211 111122223222 2221000
Q ss_pred ----------ceEeEE--------------eecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChH
Q 009842 79 ----------EEVGYA--------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD 134 (524)
Q Consensus 79 ----------~~vg~~--------------~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~ 134 (524)
...|.. +....+ .+.-=...+.|.-+|..+.+.+.-+..++.+||.. ..+|..
T Consensus 110 vLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek--~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPT-SALDPE 186 (256)
T COG4598 110 VLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK--ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT-SALDPE 186 (256)
T ss_pred HHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh--hhcCccccCchHHHHHHHHHHHhcCCceEeecCCc-ccCCHH
Confidence 000100 000000 11222347888888888888888899999999998 789999
Q ss_pred HHHHHHHHHHhhcccCcEEEEEeccCC
Q 009842 135 ILLGLVKRLVNLRASKLKILITSATLD 161 (524)
Q Consensus 135 ~~~~~l~~i~~~~~~~~~ii~~SATl~ 161 (524)
...++++-+.....++...++.+.-+.
T Consensus 187 lVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 998888888777766778888888774
No 490
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.64 E-value=0.00011 Score=70.84 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=49.0
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|. +.+.+..+.
T Consensus 148 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH--~~~~~~~~~ 217 (264)
T PRK14243 148 SGLSLSGGQQQRLCIARAIAVQPEVILMDEPC-SALDPISTLRIEELMHELKE-QYTIIIVTH--NMQQAARVS 217 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEec--CHHHHHHhC
Confidence 34457888988888888889999999999997 78888877665555544433 445555554 444444444
No 491
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.64 E-value=5.6e-05 Score=72.38 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|..+
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14240 143 SALGLSGGQQQRLCIARALAVEPEVLLMDEPT-SALDPISTLKIEELIQELKK-DYTIVIVTHNM 205 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH
Confidence 34457899999998888899999999999998 78888876665554444433 55677766654
No 492
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.00015 Score=70.83 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=46.5
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 177 ~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPt-s~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~ 239 (285)
T PRK14254 177 SGLDLSGGQQQRLCIARAIAPDPEVILMDEPA-SALDPVATSKIEDLIEELAE-EYTVVIVTHNM 239 (285)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 34558899999998888899999999999998 78888877665555544433 44566655543
No 493
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=7.8e-05 Score=71.81 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=46.7
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 152 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~ 214 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPT-SALDPVSTRKIEELILKLKE-KYTIVIVTHNM 214 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH
Confidence 34457889999988888889999999999998 78888876665555544433 55666666654
No 494
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.63 E-value=0.0004 Score=62.58 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcccchhHHHHHHHHHHHHhCCcccceEeE-Eeecccc---c--Cccc
Q 009842 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY-AIRFEDR---T--SERT 95 (524)
Q Consensus 22 ~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i~~~~P~r~la~~~~~~~~~~~~~~~~~~vg~-~~~~~~~---~--~~~~ 95 (524)
..+|+||+|||||+++..+....... .........+. +.. .. ...+...++ .+.++.. . ...+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~----~~~~~~~~~~~--~~~----~~-~~~~~~~~~v~~~f~~~~~~~~~~~~~ 92 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK----AAKLRRGSLLF--LAG----GG-VKAGINSASVEITFDKSYFLVLQGKVE 92 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc----cccccCcchhh--hcc----cc-cCCCCceEEEEEEEECceEEecCCcCc
Confidence 78999999999999888776643211 11111111100 000 00 111111111 1122111 1 1223
Q ss_pred ceeecchHHHHHHHHhCCC----CCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPD----LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~----l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.| .+.|+..+..+.... +.+.+++++||+. ..++......+.+.+......+..+|+.|.-+
T Consensus 93 ~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 93 QI--LSGGEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred cc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 34 788877776655432 4788999999998 78888776665555554443346777777653
No 495
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.0008 Score=64.38 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=48.7
Q ss_pred eeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccCChHHHhhhc
Q 009842 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (524)
Q Consensus 97 i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl~~~~~~~~~ 169 (524)
..-.+.|+..+..+...++.+.+++++||+- ..+|......+.+.+..... +..+|+.|+-+ +.+.++.
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~--~~~~~~~ 212 (250)
T PRK14245 144 AFALSGGQQQRLCIARAMAVSPSVLLMDEPA-SALDPISTAKVEELIHELKK-DYTIVIVTHNM--QQAARVS 212 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH--HHHHhhC
Confidence 4457899999988888889999999999998 78888876665555544432 55566655543 3444443
No 496
>PLN03232 ABC transporter C family member; Provisional
Probab=97.63 E-value=0.00018 Score=85.50 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=82.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-------EEEEcccchhHHHHHHH--------------HHHHHhCC
Q 009842 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVTQPRRVAAVSVAR--------------RVAQELGV 75 (524)
Q Consensus 17 l~~~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~-------~i~~~~P~r~la~~~~~--------------~~~~~~~~ 75 (524)
+++|+.++|+||+||||||++..++.+.....|+ ..++.|-.-.....+.+ ++.+..+.
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L 719 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTAL 719 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 5689999999999999999999999887765543 22333321111111111 11111111
Q ss_pred cc--c-ceEeEEeecccccCcccceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcE
Q 009842 76 RL--G-EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (524)
Q Consensus 76 ~~--~-~~vg~~~~~~~~~~~~~~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ 152 (524)
.. . ..-|+.. ... .+=.-.+.|+.+|..+++..+++.+++++||+- ..+|...-..+++.++....++..
T Consensus 720 ~~di~~Lp~Gd~T----~IG--e~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt-SaLD~~t~~~I~~~~l~~~l~~kT 792 (1495)
T PLN03232 720 QHDLDLLPGRDLT----EIG--ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL-SALDAHVAHQVFDSCMKDELKGKT 792 (1495)
T ss_pred HHHHHhCCCCCCc----eec--CCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc-cccCHHHHHHHHHHHhhhhhcCCE
Confidence 00 0 0001100 000 111137899999999999999999999999998 678877666666665443223667
Q ss_pred EEEEeccC
Q 009842 153 ILITSATL 160 (524)
Q Consensus 153 ii~~SATl 160 (524)
+|+.|+-+
T Consensus 793 ~IlvTH~~ 800 (1495)
T PLN03232 793 RVLVTNQL 800 (1495)
T ss_pred EEEEECCh
Confidence 77777655
No 497
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00015 Score=69.38 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=46.3
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~~~~ii~~SATl 160 (524)
.+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 143 ~~~~LS~Gq~qrv~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 205 (250)
T PRK14266 143 SALGLSGGQQQRLCIARTIAVSPEVILMDEPC-SALDPISTTKIEDLIHKLKE-DYTIVIVTHNM 205 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH
Confidence 35567889999988888889999999999998 78888876665554444333 55666666543
No 498
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.62 E-value=9.3e-05 Score=80.39 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=48.9
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+.++..+...++.+.+++|+||+- ..+|......+++.+...... +..+|+.|+-+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPt-s~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl 524 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAV-SALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 44568899999999999899999999999998 788888776665555544332 56677777654
No 499
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.62 E-value=0.00087 Score=64.67 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-EE-cccchhHHHHHHHHHHHHhCCcccceEeEEeecccccCcccce
Q 009842 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (524)
Q Consensus 20 ~~~~ii~~pTGsGKTt~l~~~l~~~~~~~~~~i-~~-~~P~r~la~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~i 97 (524)
.+.++++||+|+||||.+..+....... +.++ ++ .-+.|..+.+..+.+++..+..+ +. ... ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~~----~~~--~~---- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---IK----QKE--GA---- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---Ee----CCC--CC----
Confidence 4678899999999997766666544332 3333 33 33567766666666666665321 00 000 00
Q ss_pred eecchHH-HHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhcc------cCcEEEEEeccCChHH
Q 009842 98 KYLTDGV-LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA------SKLKILITSATLDGEK 164 (524)
Q Consensus 98 ~~~T~g~-l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~------~~~~ii~~SATl~~~~ 164 (524)
.|.. ..+.+. .....++++||||=+. +......++.-++.+.+..+ .+-.++.++||...+.
T Consensus 138 ---dp~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 138 ---DPAAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred ---CHHHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 1111 111111 1123679999999998 44433333333555554332 4678899999975543
No 500
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00018 Score=78.25 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=46.1
Q ss_pred ceeecchHHHHHHHHhCCCCCCCceEEEeCCCcCCCChHHHHHHHHHHHhhccc-CcEEEEEeccC
Q 009842 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (524)
Q Consensus 96 ~i~~~T~g~l~~~l~~~~~l~~~~~iIiDE~H~~~~~~~~~~~~l~~i~~~~~~-~~~ii~~SATl 160 (524)
.+.-.+.|+.++..+...++.+.+++|+||+- ..+|......++..+...... +..+|+.|+-+
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt-~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPT-TALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 34558999999999999999999999999988 678888755544433333221 45677766654
Done!