Query 009843
Match_columns 524
No_of_seqs 395 out of 3197
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 18:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 6.6E-90 1.4E-94 715.3 40.1 407 24-464 3-409 (590)
2 KOG0352 ATP-dependent DNA heli 100.0 2.6E-88 5.7E-93 654.9 32.0 422 22-470 3-447 (641)
3 PLN03137 ATP-dependent DNA hel 100.0 1E-81 2.2E-86 687.7 46.3 413 19-458 441-870 (1195)
4 KOG0351 ATP-dependent DNA heli 100.0 5.1E-83 1.1E-87 699.1 34.2 451 23-499 249-705 (941)
5 KOG0353 ATP-dependent DNA heli 100.0 1.7E-80 3.6E-85 592.8 28.8 408 17-456 73-527 (695)
6 PRK11057 ATP-dependent DNA hel 100.0 5.8E-74 1.3E-78 622.5 47.7 409 19-464 6-414 (607)
7 TIGR01389 recQ ATP-dependent D 100.0 6.5E-74 1.4E-78 623.6 45.9 396 27-458 2-397 (591)
8 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-73 5.5E-78 602.3 48.0 374 29-410 2-377 (470)
9 PRK04837 ATP-dependent RNA hel 100.0 5.8E-52 1.3E-56 434.9 36.6 343 15-377 8-374 (423)
10 PTZ00110 helicase; Provisional 100.0 1.6E-51 3.4E-56 441.3 36.4 351 14-384 129-503 (545)
11 KOG0331 ATP-dependent RNA heli 100.0 1.1E-51 2.4E-56 422.1 31.8 347 16-383 92-466 (519)
12 KOG0330 ATP-dependent RNA heli 100.0 1E-51 2.3E-56 397.3 27.2 350 11-381 57-423 (476)
13 PRK10590 ATP-dependent RNA hel 100.0 2.6E-50 5.6E-55 425.4 37.6 342 16-376 2-363 (456)
14 PRK11776 ATP-dependent RNA hel 100.0 2.7E-50 5.9E-55 426.6 37.7 343 15-378 4-362 (460)
15 PRK04537 ATP-dependent RNA hel 100.0 1.3E-50 2.8E-55 435.6 35.1 343 16-376 10-375 (572)
16 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-50 4.5E-55 431.4 35.7 347 12-379 118-489 (518)
17 PRK11192 ATP-dependent RNA hel 100.0 8.4E-50 1.8E-54 420.2 38.9 341 16-374 2-361 (434)
18 PRK01297 ATP-dependent RNA hel 100.0 1.1E-49 2.4E-54 423.2 38.3 348 14-377 86-454 (475)
19 PRK11634 ATP-dependent RNA hel 100.0 2.6E-49 5.7E-54 427.9 38.5 344 15-378 6-365 (629)
20 COG0513 SrmB Superfamily II DN 100.0 3.6E-49 7.8E-54 419.3 36.0 343 15-377 29-393 (513)
21 PTZ00424 helicase 45; Provisio 100.0 1.6E-48 3.6E-53 406.9 33.9 344 15-377 28-386 (401)
22 KOG0328 Predicted ATP-dependen 100.0 1E-48 2.2E-53 361.8 26.2 349 9-377 21-385 (400)
23 KOG0333 U5 snRNP-like RNA heli 100.0 2.7E-48 5.8E-53 385.7 29.7 340 11-368 241-627 (673)
24 TIGR03817 DECH_helic helicase/ 100.0 7.3E-47 1.6E-51 416.5 36.1 339 20-371 19-394 (742)
25 KOG0345 ATP-dependent RNA heli 100.0 1.1E-46 2.5E-51 370.2 30.4 334 20-375 11-374 (567)
26 KOG0336 ATP-dependent RNA heli 100.0 1.5E-46 3.2E-51 362.9 25.6 341 20-380 225-587 (629)
27 KOG0338 ATP-dependent RNA heli 100.0 1.5E-46 3.3E-51 371.8 20.7 343 14-377 180-545 (691)
28 KOG0340 ATP-dependent RNA heli 100.0 1.2E-45 2.7E-50 351.5 25.5 355 13-380 5-376 (442)
29 KOG0342 ATP-dependent RNA heli 100.0 1E-45 2.2E-50 365.9 25.3 345 12-376 79-448 (543)
30 KOG0343 RNA Helicase [RNA proc 100.0 3.5E-45 7.6E-50 365.1 25.1 342 13-375 67-432 (758)
31 KOG0326 ATP-dependent RNA heli 100.0 4.3E-46 9.2E-51 349.7 16.4 348 14-384 84-448 (459)
32 KOG0348 ATP-dependent RNA heli 100.0 3.8E-44 8.2E-49 356.7 27.6 350 10-376 131-565 (708)
33 KOG0346 RNA helicase [RNA proc 100.0 1.4E-43 3.1E-48 345.4 25.1 335 13-368 17-413 (569)
34 KOG0335 ATP-dependent RNA heli 100.0 6.6E-44 1.4E-48 359.0 23.1 344 16-376 75-455 (482)
35 KOG0347 RNA helicase [RNA proc 100.0 7.2E-43 1.6E-47 348.6 23.0 335 13-380 179-585 (731)
36 KOG0332 ATP-dependent RNA heli 100.0 6.5E-42 1.4E-46 327.8 25.4 350 9-376 84-455 (477)
37 TIGR00580 mfd transcription-re 100.0 1.3E-40 2.8E-45 370.3 39.3 321 19-365 433-770 (926)
38 PRK02362 ski2-like helicase; P 100.0 5.9E-41 1.3E-45 373.1 36.5 329 16-366 2-398 (737)
39 PRK14701 reverse gyrase; Provi 100.0 2.1E-41 4.6E-46 392.3 32.7 333 23-376 65-467 (1638)
40 PRK13767 ATP-dependent helicas 100.0 9.7E-41 2.1E-45 374.9 35.4 319 22-362 18-395 (876)
41 PRK10917 ATP-dependent DNA hel 100.0 5.2E-40 1.1E-44 360.7 38.4 316 23-363 247-587 (681)
42 KOG0341 DEAD-box protein abstr 100.0 9.9E-43 2.1E-47 334.3 14.4 333 13-367 168-530 (610)
43 KOG0339 ATP-dependent RNA heli 100.0 4.8E-40 1E-44 325.3 29.9 358 11-387 219-597 (731)
44 TIGR00643 recG ATP-dependent D 100.0 2.4E-39 5.2E-44 353.3 38.1 311 25-362 223-563 (630)
45 COG1201 Lhr Lhr-like helicases 100.0 2.2E-39 4.8E-44 349.1 34.6 323 21-364 7-361 (814)
46 PRK10689 transcription-repair 100.0 9E-39 2E-43 362.8 39.4 331 20-376 583-936 (1147)
47 PRK00254 ski2-like helicase; P 100.0 1.2E-38 2.5E-43 353.9 35.7 321 17-366 3-389 (720)
48 KOG0334 RNA helicase [RNA proc 100.0 1.5E-39 3.2E-44 348.6 25.2 348 11-377 361-732 (997)
49 KOG0327 Translation initiation 100.0 1.7E-39 3.6E-44 314.1 21.8 344 13-378 24-383 (397)
50 KOG0344 ATP-dependent RNA heli 100.0 5.4E-39 1.2E-43 325.3 26.2 343 20-378 141-508 (593)
51 KOG4284 DEAD box protein [Tran 100.0 2.5E-39 5.5E-44 327.9 22.1 341 13-373 23-388 (980)
52 PRK01172 ski2-like helicase; P 100.0 2.7E-37 5.8E-42 341.4 33.4 335 16-375 2-389 (674)
53 KOG0350 DEAD-box ATP-dependent 100.0 6E-38 1.3E-42 310.6 21.0 335 30-379 152-554 (620)
54 PRK09401 reverse gyrase; Revie 100.0 1.7E-35 3.6E-40 336.8 32.8 306 24-350 67-429 (1176)
55 PRK09751 putative ATP-dependen 100.0 1.2E-35 2.5E-40 339.0 30.6 290 58-363 1-383 (1490)
56 COG1202 Superfamily II helicas 100.0 3.9E-36 8.4E-41 301.9 21.9 331 17-365 196-553 (830)
57 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-34 2.3E-39 296.2 31.0 299 42-350 1-357 (357)
58 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7E-35 1.5E-39 316.1 30.6 317 25-362 3-388 (844)
59 TIGR01587 cas3_core CRISPR-ass 100.0 7.3E-35 1.6E-39 299.4 26.9 303 55-366 1-337 (358)
60 KOG0337 ATP-dependent RNA heli 100.0 6.2E-36 1.3E-40 290.9 16.9 345 13-376 19-379 (529)
61 PRK12898 secA preprotein trans 100.0 1.4E-33 2.9E-38 299.9 30.2 326 26-368 92-589 (656)
62 COG1111 MPH1 ERCC4-like helica 100.0 2.8E-33 6.1E-38 279.9 29.5 317 35-370 12-486 (542)
63 PHA02653 RNA helicase NPH-II; 100.0 3.7E-33 7.9E-38 301.1 31.1 298 42-369 168-518 (675)
64 PHA02558 uvsW UvsW helicase; P 100.0 2.5E-33 5.4E-38 298.7 27.8 299 37-365 113-452 (501)
65 PRK09200 preprotein translocas 100.0 3E-32 6.5E-37 295.6 34.1 325 26-367 67-543 (790)
66 COG1205 Distinct helicase fami 100.0 9.8E-33 2.1E-37 305.6 30.6 333 24-365 57-422 (851)
67 TIGR03714 secA2 accessory Sec 100.0 8.2E-32 1.8E-36 289.5 36.2 322 27-367 60-539 (762)
68 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.8E-32 3.8E-37 302.5 30.4 303 44-370 8-341 (819)
69 PRK11664 ATP-dependent RNA hel 100.0 8.9E-33 1.9E-37 305.5 27.3 302 44-369 11-343 (812)
70 PRK13766 Hef nuclease; Provisi 100.0 2.1E-31 4.5E-36 299.7 35.5 313 37-367 14-481 (773)
71 TIGR01054 rgy reverse gyrase. 100.0 1.9E-31 4.2E-36 304.2 32.4 290 24-337 65-409 (1171)
72 PRK05580 primosome assembly pr 100.0 1.3E-30 2.7E-35 285.6 36.0 319 38-374 144-558 (679)
73 COG1204 Superfamily II helicas 100.0 1.7E-31 3.6E-36 292.0 27.6 319 21-362 15-405 (766)
74 TIGR00963 secA preprotein tran 100.0 9.4E-31 2E-35 279.6 32.2 326 26-368 45-520 (745)
75 TIGR00603 rad25 DNA repair hel 100.0 9.8E-31 2.1E-35 281.2 27.8 304 38-367 255-609 (732)
76 COG1200 RecG RecG-like helicas 100.0 1.3E-29 2.9E-34 263.7 34.5 323 19-366 244-592 (677)
77 TIGR00595 priA primosomal prot 100.0 2E-30 4.3E-35 274.6 28.9 292 57-366 1-383 (505)
78 KOG0354 DEAD-box like helicase 100.0 1.1E-30 2.4E-35 275.5 24.2 314 35-366 59-530 (746)
79 PRK04914 ATP-dependent helicas 100.0 2.1E-29 4.7E-34 279.7 31.3 317 38-365 152-603 (956)
80 KOG0329 ATP-dependent RNA heli 100.0 5.6E-31 1.2E-35 240.9 11.6 299 13-367 40-357 (387)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-28 4.3E-33 261.2 31.6 334 26-376 97-502 (1230)
82 COG1061 SSL2 DNA or RNA helica 100.0 9.1E-29 2E-33 258.8 27.6 295 36-357 34-382 (442)
83 PRK11131 ATP-dependent RNA hel 100.0 5.3E-29 1.2E-33 280.1 27.2 299 42-370 78-416 (1294)
84 COG1197 Mfd Transcription-repa 100.0 8.7E-28 1.9E-32 263.0 35.7 328 13-366 570-914 (1139)
85 PRK12906 secA preprotein trans 100.0 4.9E-27 1.1E-31 253.3 31.6 325 26-367 69-555 (796)
86 KOG0947 Cytoplasmic exosomal R 100.0 2.2E-27 4.8E-32 250.5 25.7 325 27-377 287-737 (1248)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.6E-27 1E-31 265.5 26.8 300 44-369 73-408 (1283)
88 KOG0951 RNA helicase BRR2, DEA 99.9 4.6E-26 1E-30 245.8 26.1 353 6-374 276-711 (1674)
89 COG4581 Superfamily II RNA hel 99.9 2.4E-26 5.2E-31 251.7 24.2 321 32-374 114-548 (1041)
90 PRK12904 preprotein translocas 99.9 2.7E-25 5.8E-30 240.8 31.6 324 26-367 70-575 (830)
91 PRK09694 helicase Cas3; Provis 99.9 4.4E-25 9.6E-30 244.0 31.5 307 34-354 282-664 (878)
92 PRK13104 secA preprotein trans 99.9 6.9E-25 1.5E-29 237.8 31.7 324 27-367 72-589 (896)
93 KOG0948 Nuclear exosomal RNA h 99.9 2.2E-26 4.8E-31 237.6 17.3 317 38-377 129-552 (1041)
94 KOG0349 Putative DEAD-box RNA 99.9 2.1E-26 4.5E-31 224.8 14.6 268 80-365 288-615 (725)
95 KOG0950 DNA polymerase theta/e 99.9 3.6E-25 7.8E-30 235.6 20.7 335 24-377 209-623 (1008)
96 PRK11448 hsdR type I restricti 99.9 3.5E-24 7.6E-29 243.3 29.4 309 38-354 413-802 (1123)
97 PRK13107 preprotein translocas 99.9 2.3E-23 5.1E-28 225.3 29.8 325 26-367 71-593 (908)
98 PLN03142 Probable chromatin-re 99.9 2.5E-22 5.5E-27 224.2 31.9 308 38-362 169-594 (1033)
99 COG4098 comFA Superfamily II D 99.9 2.2E-22 4.7E-27 192.3 24.9 285 38-354 97-403 (441)
100 COG1198 PriA Primosomal protei 99.9 5.1E-22 1.1E-26 213.7 29.6 325 37-376 197-614 (730)
101 COG1110 Reverse gyrase [DNA re 99.9 4.1E-22 8.9E-27 213.3 28.5 292 24-337 69-417 (1187)
102 PRK12899 secA preprotein trans 99.9 1.8E-21 3.9E-26 211.0 31.9 122 243-367 551-683 (970)
103 TIGR00631 uvrb excinuclease AB 99.9 3.9E-21 8.5E-26 208.6 30.8 129 244-373 426-561 (655)
104 COG1203 CRISPR-associated heli 99.9 7.7E-22 1.7E-26 218.5 23.7 315 38-363 195-548 (733)
105 cd00268 DEADc DEAD-box helicas 99.9 1E-21 2.2E-26 185.4 21.0 182 17-215 1-196 (203)
106 PRK12900 secA preprotein trans 99.9 5E-21 1.1E-25 208.1 27.9 124 243-368 581-714 (1025)
107 COG1643 HrpA HrpA-like helicas 99.9 2.6E-21 5.7E-26 211.2 22.4 305 41-368 53-390 (845)
108 KOG0922 DEAH-box RNA helicase 99.9 2.4E-21 5.3E-26 200.4 19.6 302 44-370 57-395 (674)
109 PRK12326 preprotein translocas 99.9 2E-19 4.3E-24 190.7 32.1 326 26-369 67-551 (764)
110 PRK05298 excinuclease ABC subu 99.9 2.4E-19 5.1E-24 196.1 32.1 121 246-367 432-559 (652)
111 KOG0949 Predicted helicase, DE 99.8 1.7E-19 3.6E-24 191.6 24.8 324 38-376 511-1057(1330)
112 PRK13103 secA preprotein trans 99.8 1.5E-18 3.2E-23 188.4 29.9 324 26-367 71-593 (913)
113 KOG0953 Mitochondrial RNA heli 99.8 2.3E-19 4.9E-24 181.1 20.8 284 53-378 191-489 (700)
114 PRK12903 secA preprotein trans 99.8 3.6E-18 7.9E-23 183.5 30.4 324 26-367 67-541 (925)
115 PF00270 DEAD: DEAD/DEAH box h 99.8 8.1E-20 1.8E-24 166.9 15.5 156 40-207 1-166 (169)
116 COG0556 UvrB Helicase subunit 99.8 3.4E-18 7.4E-23 172.3 27.0 163 194-365 387-557 (663)
117 KOG0923 mRNA splicing factor A 99.8 3.5E-19 7.5E-24 182.7 19.8 302 38-365 265-606 (902)
118 TIGR00348 hsdR type I site-spe 99.8 4.5E-18 9.8E-23 186.7 28.6 295 39-351 239-633 (667)
119 TIGR01407 dinG_rel DnaQ family 99.8 1.7E-17 3.7E-22 187.6 32.2 168 194-365 596-814 (850)
120 KOG4150 Predicted ATP-dependen 99.8 8.1E-19 1.8E-23 177.0 16.4 338 26-371 275-648 (1034)
121 CHL00122 secA preprotein trans 99.8 8.1E-17 1.8E-21 174.3 30.7 281 26-324 65-490 (870)
122 KOG0924 mRNA splicing factor A 99.8 1.3E-18 2.9E-23 178.7 15.4 299 41-365 359-697 (1042)
123 KOG0385 Chromatin remodeling c 99.8 1.4E-17 3E-22 173.7 22.6 307 37-361 166-593 (971)
124 cd00079 HELICc Helicase superf 99.8 1.2E-17 2.6E-22 145.5 14.2 118 244-361 12-131 (131)
125 PRK12902 secA preprotein trans 99.8 1E-15 2.3E-20 165.4 31.8 282 26-325 74-506 (939)
126 COG4096 HsdR Type I site-speci 99.8 1.2E-17 2.6E-22 177.0 15.6 292 37-352 164-525 (875)
127 KOG0920 ATP-dependent RNA heli 99.8 1.8E-17 3.9E-22 180.6 17.3 307 39-368 174-547 (924)
128 KOG0926 DEAH-box RNA helicase 99.7 2.3E-17 5E-22 172.4 16.0 301 44-365 262-704 (1172)
129 PRK07246 bifunctional ATP-depe 99.7 1.3E-15 2.9E-20 170.1 31.1 180 195-379 575-799 (820)
130 PF00271 Helicase_C: Helicase 99.7 6.7E-18 1.5E-22 133.6 9.2 78 276-353 1-78 (78)
131 PRK08074 bifunctional ATP-depe 99.7 3.7E-14 8E-19 161.3 34.9 183 195-378 674-908 (928)
132 KOG0387 Transcription-coupled 99.7 2.1E-15 4.6E-20 158.3 21.3 316 38-361 205-652 (923)
133 KOG0390 DNA repair protein, SN 99.7 5.3E-15 1.1E-19 159.0 23.2 311 38-362 238-702 (776)
134 KOG0384 Chromodomain-helicase 99.7 1.4E-15 3E-20 165.9 18.5 315 37-365 369-811 (1373)
135 KOG0925 mRNA splicing factor A 99.7 1.8E-14 4E-19 143.7 24.2 322 14-365 24-387 (699)
136 PRK14873 primosome assembly pr 99.7 5.2E-14 1.1E-18 152.9 28.3 289 59-375 166-548 (665)
137 smart00487 DEXDc DEAD-like hel 99.6 1.2E-14 2.6E-19 135.3 16.9 166 34-215 4-182 (201)
138 KOG0389 SNF2 family DNA-depend 99.6 3.4E-14 7.5E-19 149.2 21.8 319 38-367 399-890 (941)
139 KOG1123 RNA polymerase II tran 99.6 2E-15 4.3E-20 150.9 11.9 289 38-354 302-636 (776)
140 KOG1000 Chromatin remodeling p 99.6 3.2E-14 6.9E-19 142.3 18.5 338 4-362 166-598 (689)
141 PRK12901 secA preprotein trans 99.6 3.4E-13 7.3E-18 147.6 26.8 123 243-367 611-743 (1112)
142 TIGR03117 cas_csf4 CRISPR-asso 99.6 4.4E-13 9.5E-18 144.0 27.0 158 195-355 373-604 (636)
143 smart00490 HELICc helicase sup 99.6 5.4E-15 1.2E-19 117.5 9.3 81 273-353 2-82 (82)
144 PRK11747 dinG ATP-dependent DN 99.6 1.8E-12 3.8E-17 143.3 31.3 165 195-365 458-674 (697)
145 PF04851 ResIII: Type III rest 99.6 3.2E-15 6.8E-20 138.2 6.0 156 38-204 3-183 (184)
146 COG1199 DinG Rad3-related DNA 99.6 8.4E-13 1.8E-17 146.4 26.1 165 195-363 405-616 (654)
147 COG4889 Predicted helicase [Ge 99.6 7.1E-15 1.5E-19 155.1 8.5 308 37-353 160-573 (1518)
148 TIGR00604 rad3 DNA repair heli 99.5 3.1E-12 6.7E-17 142.3 27.5 69 33-101 5-83 (705)
149 KOG0951 RNA helicase BRR2, DEA 99.5 1.8E-12 4E-17 141.8 18.6 306 38-375 1143-1504(1674)
150 KOG0392 SNF2 family DNA-depend 99.4 2.8E-11 6E-16 132.5 21.4 311 38-366 975-1455(1549)
151 KOG0386 Chromatin remodeling c 99.4 7.1E-12 1.5E-16 135.0 15.3 311 38-365 394-836 (1157)
152 cd00046 DEXDc DEAD-like helica 99.4 3.8E-12 8.2E-17 111.3 11.2 135 54-203 1-144 (144)
153 TIGR02562 cas3_yersinia CRISPR 99.4 7.3E-11 1.6E-15 130.2 22.8 92 261-355 759-882 (1110)
154 COG0653 SecA Preprotein transl 99.3 1.1E-09 2.5E-14 118.8 26.3 324 27-367 70-547 (822)
155 KOG4439 RNA polymerase II tran 99.2 3.5E-09 7.6E-14 110.7 20.7 101 261-361 749-852 (901)
156 KOG0388 SNF2 family DNA-depend 99.1 3.8E-09 8.2E-14 110.3 18.2 104 257-360 1043-1147(1185)
157 PF02399 Herpes_ori_bp: Origin 99.1 1.3E-08 2.8E-13 110.0 22.8 283 56-365 52-388 (824)
158 PF06862 DUF1253: Protein of u 99.0 2.1E-07 4.5E-12 95.9 26.9 297 78-375 37-425 (442)
159 KOG1002 Nucleotide excision re 99.0 6.4E-08 1.4E-12 97.7 19.5 106 260-365 640-749 (791)
160 COG0553 HepA Superfamily II DN 98.9 8E-08 1.7E-12 110.4 22.8 117 245-361 693-816 (866)
161 PF00176 SNF2_N: SNF2 family N 98.9 4.4E-09 9.6E-14 105.0 10.9 159 42-218 1-187 (299)
162 KOG0391 SNF2 family DNA-depend 98.9 8.5E-08 1.8E-12 105.0 20.4 120 257-376 1275-1396(1958)
163 PF07652 Flavi_DEAD: Flaviviru 98.9 1.4E-09 3E-14 94.0 5.3 133 52-207 3-140 (148)
164 KOG1015 Transcription regulato 98.8 5.6E-07 1.2E-11 97.1 20.8 113 249-361 1131-1271(1567)
165 PF07517 SecA_DEAD: SecA DEAD- 98.7 7.8E-08 1.7E-12 93.2 11.5 135 26-171 66-210 (266)
166 COG0610 Type I site-specific r 98.5 9.2E-06 2E-10 92.9 22.7 281 54-352 274-636 (962)
167 smart00488 DEXDc2 DEAD-like he 98.5 6.5E-07 1.4E-11 88.9 10.6 74 34-108 5-91 (289)
168 smart00489 DEXDc3 DEAD-like he 98.5 6.5E-07 1.4E-11 88.9 10.6 74 34-108 5-91 (289)
169 KOG0921 Dosage compensation co 98.3 5.9E-06 1.3E-10 89.1 11.7 107 258-365 643-774 (1282)
170 KOG2340 Uncharacterized conser 98.2 1.1E-05 2.3E-10 82.8 11.9 117 259-375 553-678 (698)
171 PRK15483 type III restriction- 98.1 3.7E-05 8.1E-10 86.1 15.1 45 308-352 501-545 (986)
172 KOG0952 DNA/RNA helicase MER3/ 98.1 2.3E-07 5E-12 101.4 -2.6 124 38-172 927-1060(1230)
173 PF13307 Helicase_C_2: Helicas 98.1 6.7E-06 1.5E-10 74.9 7.3 112 250-364 2-149 (167)
174 TIGR00596 rad1 DNA repair prot 97.9 0.00043 9.4E-09 77.4 18.5 78 132-218 9-92 (814)
175 PF13872 AAA_34: P-loop contai 97.9 9.5E-05 2.1E-09 72.2 11.0 163 38-207 37-224 (303)
176 PF13604 AAA_30: AAA domain; P 97.7 0.00013 2.8E-09 68.2 8.3 56 38-93 1-61 (196)
177 COG3587 Restriction endonuclea 97.6 0.0041 8.9E-08 67.8 19.1 71 307-377 482-565 (985)
178 PF13086 AAA_11: AAA domain; P 97.6 0.00016 3.4E-09 69.1 6.9 63 38-100 1-75 (236)
179 KOG1803 DNA helicase [Replicat 97.5 0.00015 3.3E-09 76.0 6.7 63 37-99 184-250 (649)
180 PF02562 PhoH: PhoH-like prote 97.5 0.00021 4.6E-09 66.7 5.9 54 37-90 3-61 (205)
181 PF13245 AAA_19: Part of AAA d 97.4 0.00038 8.2E-09 54.3 6.2 53 46-98 2-62 (76)
182 PF12340 DUF3638: Protein of u 97.4 0.0035 7.6E-08 59.2 13.2 81 15-100 3-91 (229)
183 TIGR01448 recD_rel helicase, p 97.4 0.0019 4E-08 72.3 13.0 61 31-92 317-382 (720)
184 KOG1016 Predicted DNA helicase 97.3 0.062 1.4E-06 58.2 23.0 110 258-367 719-849 (1387)
185 PRK10536 hypothetical protein; 97.3 0.0028 6E-08 61.1 11.9 56 35-90 56-116 (262)
186 KOG1805 DNA replication helica 97.3 0.0022 4.8E-08 70.7 12.2 127 38-172 669-810 (1100)
187 KOG1802 RNA helicase nonsense 97.2 0.00065 1.4E-08 71.8 6.9 79 33-111 405-487 (935)
188 smart00492 HELICc3 helicase su 97.2 0.003 6.5E-08 55.6 10.1 67 271-337 4-79 (141)
189 PF09848 DUF2075: Uncharacteri 97.2 0.0012 2.6E-08 67.7 8.7 45 56-100 4-53 (352)
190 TIGR01447 recD exodeoxyribonuc 97.2 0.0044 9.5E-08 67.5 12.7 70 30-99 137-214 (586)
191 PRK10875 recD exonuclease V su 97.1 0.0053 1.1E-07 67.1 13.2 77 23-99 136-220 (615)
192 smart00491 HELICc2 helicase su 97.1 0.0032 6.9E-08 55.5 9.1 93 271-363 4-137 (142)
193 PF13401 AAA_22: AAA domain; P 97.0 0.0024 5.3E-08 55.1 7.1 19 52-70 3-21 (131)
194 TIGR00376 DNA helicase, putati 96.9 0.0046 9.9E-08 68.2 9.8 74 37-110 156-233 (637)
195 KOG1132 Helicase of the DEAD s 96.8 0.0048 1E-07 67.6 9.3 77 33-110 17-144 (945)
196 PRK06526 transposase; Provisio 96.7 0.0059 1.3E-07 59.4 7.7 44 50-93 95-140 (254)
197 COG1875 NYN ribonuclease and A 96.6 0.0086 1.9E-07 59.7 8.7 63 30-92 220-290 (436)
198 KOG1131 RNA polymerase II tran 96.6 0.012 2.6E-07 60.9 9.8 68 33-100 11-89 (755)
199 cd00009 AAA The AAA+ (ATPases 96.6 0.043 9.4E-07 47.5 12.2 18 53-70 19-36 (151)
200 PF05970 PIF1: PIF1-like helic 96.6 0.0062 1.4E-07 62.7 7.7 54 38-91 1-63 (364)
201 PRK08181 transposase; Validate 96.5 0.028 6.1E-07 55.1 11.5 54 40-93 89-148 (269)
202 PRK14956 DNA polymerase III su 96.5 0.017 3.8E-07 60.7 10.5 57 1-73 1-60 (484)
203 PRK12723 flagellar biosynthesi 96.5 0.057 1.2E-06 55.8 13.9 123 54-215 175-309 (388)
204 PF00448 SRP54: SRP54-type pro 96.4 0.062 1.3E-06 50.2 12.6 126 56-214 4-136 (196)
205 PF13871 Helicase_C_4: Helicas 96.4 0.011 2.5E-07 57.6 7.8 58 299-356 52-117 (278)
206 PRK08084 DNA replication initi 96.4 0.038 8.3E-07 53.2 11.5 17 54-70 46-62 (235)
207 PRK12377 putative replication 96.3 0.029 6.2E-07 54.3 10.0 41 54-94 102-144 (248)
208 PRK04296 thymidine kinase; Pro 96.3 0.011 2.3E-07 55.0 6.7 32 55-86 4-38 (190)
209 PRK08727 hypothetical protein; 96.3 0.041 8.8E-07 52.9 10.9 16 54-69 42-57 (233)
210 PLN03025 replication factor C 96.2 0.039 8.5E-07 55.7 11.2 51 7-71 2-52 (319)
211 PRK05973 replicative DNA helic 96.2 0.066 1.4E-06 51.3 12.0 160 16-202 19-192 (237)
212 PF00580 UvrD-helicase: UvrD/R 96.2 0.0064 1.4E-07 60.8 5.4 60 39-100 1-67 (315)
213 cd01122 GP4d_helicase GP4d_hel 96.2 0.076 1.6E-06 52.2 12.9 120 50-172 27-154 (271)
214 cd01124 KaiC KaiC is a circadi 96.2 0.03 6.5E-07 51.5 9.4 48 56-104 2-52 (187)
215 PRK06893 DNA replication initi 96.2 0.025 5.5E-07 54.2 9.1 47 158-207 91-138 (229)
216 PRK07952 DNA replication prote 96.1 0.13 2.8E-06 49.7 13.3 53 41-93 79-141 (244)
217 smart00382 AAA ATPases associa 96.1 0.013 2.9E-07 50.2 6.1 38 53-90 2-42 (148)
218 PRK06921 hypothetical protein; 96.0 0.13 2.8E-06 50.4 13.3 41 53-93 117-160 (266)
219 TIGR02768 TraA_Ti Ti-type conj 96.0 0.04 8.6E-07 62.1 10.7 56 37-92 351-410 (744)
220 COG2256 MGS1 ATPase related to 96.0 0.03 6.5E-07 56.7 8.5 35 54-88 49-83 (436)
221 cd01120 RecA-like_NTPases RecA 95.9 0.1 2.3E-06 46.2 11.4 34 56-89 2-38 (165)
222 PRK12323 DNA polymerase III su 95.8 0.034 7.3E-07 60.4 8.8 51 6-72 4-57 (700)
223 PRK13889 conjugal transfer rel 95.8 0.12 2.7E-06 59.4 13.7 54 38-91 346-403 (988)
224 PRK14949 DNA polymerase III su 95.8 0.071 1.5E-06 60.0 11.4 51 6-72 4-57 (944)
225 PRK08903 DnaA regulatory inact 95.7 0.15 3.2E-06 48.7 12.1 17 53-69 42-58 (227)
226 PRK06645 DNA polymerase III su 95.7 0.11 2.5E-06 55.5 12.1 54 4-73 7-63 (507)
227 PRK14712 conjugal transfer nic 95.6 0.042 9E-07 65.6 9.1 66 38-107 835-909 (1623)
228 PRK06835 DNA replication prote 95.6 0.24 5.2E-06 50.1 13.4 41 53-93 183-225 (329)
229 PRK14974 cell division protein 95.6 0.57 1.2E-05 47.5 16.1 51 158-212 222-273 (336)
230 PF05621 TniB: Bacterial TniB 95.6 0.096 2.1E-06 51.6 10.1 41 158-199 145-186 (302)
231 KOG1133 Helicase of the DEAD s 95.6 0.25 5.4E-06 53.3 13.7 108 252-363 624-778 (821)
232 KOG0989 Replication factor C, 95.6 0.047 1E-06 53.4 7.7 36 42-77 40-81 (346)
233 PRK13342 recombination factor 95.6 0.064 1.4E-06 56.3 9.6 19 54-72 37-55 (413)
234 PRK08116 hypothetical protein; 95.5 0.36 7.7E-06 47.5 14.2 39 55-93 116-156 (268)
235 PRK07003 DNA polymerase III su 95.5 0.06 1.3E-06 59.4 9.2 50 6-71 4-56 (830)
236 PRK14959 DNA polymerase III su 95.5 0.13 2.8E-06 56.1 11.7 51 6-72 4-57 (624)
237 PRK04195 replication factor C 95.5 0.12 2.6E-06 55.4 11.5 53 7-72 3-58 (482)
238 PTZ00112 origin recognition co 95.5 0.2 4.2E-06 56.2 13.0 32 39-70 759-798 (1164)
239 PRK14958 DNA polymerase III su 95.5 0.075 1.6E-06 57.1 9.9 51 6-72 4-57 (509)
240 PRK10917 ATP-dependent DNA hel 95.4 0.043 9.3E-07 61.4 8.0 75 257-331 309-388 (681)
241 cd00984 DnaB_C DnaB helicase C 95.4 0.15 3.2E-06 49.2 10.7 144 52-202 12-172 (242)
242 COG1474 CDC6 Cdc6-related prot 95.3 0.36 7.9E-06 49.6 13.9 17 54-70 43-59 (366)
243 PRK05580 primosome assembly pr 95.3 0.088 1.9E-06 58.8 10.1 76 258-334 190-266 (679)
244 PRK11889 flhF flagellar biosyn 95.3 0.45 9.7E-06 49.0 14.1 55 158-216 320-375 (436)
245 PF13173 AAA_14: AAA domain 95.3 0.11 2.3E-06 44.8 8.6 40 159-206 62-101 (128)
246 COG1419 FlhF Flagellar GTP-bin 95.3 0.5 1.1E-05 48.5 14.3 57 158-218 281-338 (407)
247 TIGR02928 orc1/cdc6 family rep 95.3 0.17 3.6E-06 52.1 11.4 17 54-70 41-57 (365)
248 PRK05703 flhF flagellar biosyn 95.3 0.86 1.9E-05 47.9 16.7 55 158-216 299-355 (424)
249 COG1110 Reverse gyrase [DNA re 95.2 0.078 1.7E-06 59.4 9.0 76 244-319 111-192 (1187)
250 PRK13709 conjugal transfer nic 95.2 0.072 1.6E-06 64.5 9.5 68 38-109 967-1043(1747)
251 PRK14961 DNA polymerase III su 95.2 0.14 3.1E-06 52.6 10.5 51 6-72 4-57 (363)
252 PRK13826 Dtr system oriT relax 95.1 0.13 2.9E-06 59.5 11.0 69 37-109 380-453 (1102)
253 PRK14964 DNA polymerase III su 95.1 0.16 3.4E-06 54.1 10.7 47 157-209 115-161 (491)
254 KOG0739 AAA+-type ATPase [Post 95.1 0.54 1.2E-05 46.0 13.2 112 55-213 168-287 (439)
255 KOG0383 Predicted helicase [Ge 95.1 0.0081 1.8E-07 65.5 1.0 64 257-321 630-696 (696)
256 PRK14960 DNA polymerase III su 95.1 0.14 3.1E-06 55.8 10.3 52 6-73 3-57 (702)
257 PRK07994 DNA polymerase III su 95.1 0.12 2.7E-06 56.6 10.0 51 6-72 4-57 (647)
258 PHA02544 44 clamp loader, smal 95.1 0.42 9.1E-06 48.0 13.4 50 5-70 8-60 (316)
259 TIGR00595 priA primosomal prot 95.0 0.12 2.7E-06 55.5 9.8 76 258-334 25-101 (505)
260 PRK14951 DNA polymerase III su 95.0 0.11 2.5E-06 56.7 9.5 52 6-73 4-58 (618)
261 PRK08691 DNA polymerase III su 94.9 0.13 2.8E-06 56.6 9.7 54 6-72 4-57 (709)
262 cd01126 TraG_VirD4 The TraG/Tr 94.9 0.02 4.3E-07 59.5 3.3 57 55-111 1-58 (384)
263 PRK14873 primosome assembly pr 94.9 0.21 4.6E-06 55.3 11.2 89 245-334 173-265 (665)
264 PRK13341 recombination factor 94.8 0.2 4.3E-06 56.1 11.1 38 159-205 110-147 (725)
265 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.22 4.9E-06 47.2 10.1 19 53-71 38-56 (226)
266 PF00308 Bac_DnaA: Bacterial d 94.8 0.14 3.1E-06 48.6 8.6 15 158-172 97-111 (219)
267 TIGR02760 TraI_TIGR conjugativ 94.8 0.09 2E-06 65.1 8.9 66 37-106 1018-1092(1960)
268 TIGR02881 spore_V_K stage V sp 94.7 0.27 5.8E-06 48.1 10.6 18 54-71 43-60 (261)
269 PRK14722 flhF flagellar biosyn 94.6 0.64 1.4E-05 47.7 13.4 54 158-215 215-269 (374)
270 PRK12724 flagellar biosynthesi 94.6 0.96 2.1E-05 47.0 14.6 121 55-215 225-356 (432)
271 PRK05563 DNA polymerase III su 94.6 0.21 4.6E-06 54.4 10.4 54 6-72 4-57 (559)
272 PRK12422 chromosomal replicati 94.6 0.36 7.8E-06 51.0 11.7 39 54-93 142-183 (445)
273 PRK00411 cdc6 cell division co 94.5 0.47 1E-05 49.3 12.5 17 54-70 56-72 (394)
274 PRK14957 DNA polymerase III su 94.5 0.25 5.4E-06 53.3 10.5 51 6-72 4-57 (546)
275 PRK07764 DNA polymerase III su 94.5 0.17 3.7E-06 57.4 9.6 44 157-206 119-162 (824)
276 TIGR00643 recG ATP-dependent D 94.4 0.096 2.1E-06 58.1 7.5 75 257-331 283-362 (630)
277 PRK14962 DNA polymerase III su 94.4 0.28 6.1E-06 52.2 10.6 17 56-72 39-55 (472)
278 PRK09111 DNA polymerase III su 94.4 0.35 7.7E-06 52.9 11.6 52 6-73 12-66 (598)
279 PRK14948 DNA polymerase III su 94.4 0.33 7.2E-06 53.4 11.3 53 6-71 4-56 (620)
280 cd01121 Sms Sms (bacterial rad 94.4 0.44 9.5E-06 49.1 11.5 56 46-102 70-133 (372)
281 PF00004 AAA: ATPase family as 94.3 0.2 4.3E-06 42.8 7.8 17 56-72 1-17 (132)
282 PF02534 T4SS-DNA_transf: Type 94.3 0.034 7.3E-07 59.4 3.5 58 54-111 45-103 (469)
283 PRK00149 dnaA chromosomal repl 94.3 0.38 8.3E-06 51.1 11.4 17 54-70 149-165 (450)
284 PF03796 DnaB_C: DnaB-like hel 94.3 0.13 2.9E-06 50.2 7.3 141 55-203 21-180 (259)
285 TIGR03600 phage_DnaB phage rep 94.2 0.61 1.3E-05 49.1 12.7 146 53-202 194-353 (421)
286 PRK05642 DNA replication initi 94.2 0.22 4.8E-06 47.9 8.4 44 159-206 98-142 (234)
287 PRK14953 DNA polymerase III su 94.1 0.36 7.8E-06 51.6 10.6 55 6-73 4-58 (486)
288 PRK08769 DNA polymerase III su 94.1 0.4 8.6E-06 48.3 10.3 35 36-70 2-43 (319)
289 COG1222 RPT1 ATP-dependent 26S 94.0 0.5 1.1E-05 47.4 10.5 56 12-70 145-202 (406)
290 COG1444 Predicted P-loop ATPas 94.0 0.49 1.1E-05 52.4 11.5 133 37-204 213-357 (758)
291 PRK13897 type IV secretion sys 94.0 0.049 1.1E-06 59.4 3.9 58 54-111 159-217 (606)
292 PRK11823 DNA repair protein Ra 94.0 0.53 1.2E-05 49.8 11.5 57 46-103 68-132 (446)
293 KOG0741 AAA+-type ATPase [Post 94.0 0.55 1.2E-05 49.4 11.1 52 156-207 596-653 (744)
294 PRK12402 replication factor C 93.9 0.63 1.4E-05 47.1 11.8 17 55-71 38-54 (337)
295 PRK14955 DNA polymerase III su 93.9 0.42 9.1E-06 49.8 10.6 18 55-72 40-57 (397)
296 PRK05707 DNA polymerase III su 93.9 0.38 8.3E-06 48.7 9.8 32 39-70 4-39 (328)
297 PRK06731 flhF flagellar biosyn 93.8 2.4 5.1E-05 41.6 15.0 55 157-215 153-208 (270)
298 TIGR02760 TraI_TIGR conjugativ 93.8 2.6 5.6E-05 52.7 18.5 55 38-92 429-488 (1960)
299 PF02456 Adeno_IVa2: Adenoviru 93.8 0.071 1.5E-06 52.1 4.2 34 56-91 90-130 (369)
300 TIGR03015 pepcterm_ATPase puta 93.8 0.36 7.9E-06 47.2 9.5 31 41-71 26-61 (269)
301 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.49 1.1E-05 46.2 10.2 52 52-103 35-92 (259)
302 PRK12727 flagellar biosynthesi 93.7 2 4.4E-05 45.9 15.1 54 158-215 428-481 (559)
303 PRK05748 replicative DNA helic 93.7 0.32 7E-06 51.6 9.4 146 54-203 204-365 (448)
304 TIGR02655 circ_KaiC circadian 93.7 0.27 6E-06 52.6 8.9 108 45-170 250-365 (484)
305 PRK14969 DNA polymerase III su 93.7 0.28 6E-06 53.1 8.9 51 6-72 4-57 (527)
306 PRK08760 replicative DNA helic 93.6 0.31 6.6E-06 52.0 9.0 146 54-202 230-388 (476)
307 PRK08533 flagellar accessory p 93.6 0.9 2E-05 43.5 11.5 51 52-103 23-76 (230)
308 PRK05896 DNA polymerase III su 93.6 0.49 1.1E-05 51.4 10.5 51 6-72 4-57 (605)
309 PF06745 KaiC: KaiC; InterPro 93.5 0.36 7.9E-06 45.9 8.7 130 53-202 19-159 (226)
310 TIGR00362 DnaA chromosomal rep 93.5 0.6 1.3E-05 48.9 10.9 16 55-70 138-153 (405)
311 PRK07133 DNA polymerase III su 93.5 0.38 8.3E-06 53.4 9.6 56 1-72 1-59 (725)
312 PRK06067 flagellar accessory p 93.5 2.2 4.7E-05 40.8 14.0 51 53-104 25-78 (234)
313 PRK14952 DNA polymerase III su 93.4 0.65 1.4E-05 50.6 11.3 47 156-208 116-162 (584)
314 PRK06904 replicative DNA helic 93.4 1.8 3.9E-05 46.2 14.3 144 54-201 222-382 (472)
315 PTZ00454 26S protease regulato 93.4 0.81 1.7E-05 47.6 11.5 20 53-72 179-198 (398)
316 COG1484 DnaC DNA replication p 93.3 0.2 4.4E-06 48.7 6.6 65 34-98 79-152 (254)
317 PRK08939 primosomal protein Dn 93.3 0.57 1.2E-05 46.9 9.8 17 53-69 156-172 (306)
318 PF03354 Terminase_1: Phage Te 93.3 0.51 1.1E-05 50.5 10.1 61 41-101 1-77 (477)
319 PRK00440 rfc replication facto 93.2 0.9 2E-05 45.5 11.5 50 6-71 5-56 (319)
320 CHL00176 ftsH cell division pr 93.2 0.82 1.8E-05 50.5 11.7 18 54-71 217-234 (638)
321 TIGR01241 FtsH_fam ATP-depende 93.2 0.74 1.6E-05 49.6 11.3 18 54-71 89-106 (495)
322 PRK05595 replicative DNA helic 93.2 0.41 8.8E-06 50.8 9.1 145 54-202 202-360 (444)
323 PRK08840 replicative DNA helic 93.2 1.2 2.5E-05 47.5 12.4 146 53-201 217-377 (464)
324 PRK13850 type IV secretion sys 93.1 0.093 2E-06 58.0 4.2 57 54-110 140-197 (670)
325 PF13481 AAA_25: AAA domain; P 93.1 0.74 1.6E-05 42.4 9.7 138 52-200 31-186 (193)
326 PRK14965 DNA polymerase III su 93.0 0.57 1.2E-05 51.3 10.2 46 156-207 117-162 (576)
327 PRK10919 ATP-dependent DNA hel 93.0 0.18 3.9E-06 56.3 6.3 61 38-100 2-69 (672)
328 PHA02542 41 41 helicase; Provi 93.0 0.86 1.9E-05 48.5 11.1 143 56-203 193-354 (473)
329 KOG1001 Helicase-like transcri 92.9 0.31 6.8E-06 53.8 8.0 139 56-216 155-305 (674)
330 TIGR03877 thermo_KaiC_1 KaiC d 92.9 0.18 3.8E-06 48.6 5.5 50 53-103 21-73 (237)
331 PF01695 IstB_IS21: IstB-like 92.9 0.17 3.6E-06 46.5 5.0 60 34-93 22-89 (178)
332 PHA02533 17 large terminase pr 92.8 0.45 9.7E-06 51.4 8.8 63 38-100 59-126 (534)
333 TIGR00580 mfd transcription-re 92.7 0.3 6.4E-06 56.2 7.7 75 257-331 499-578 (926)
334 KOG0701 dsRNA-specific nucleas 92.7 0.079 1.7E-06 62.8 3.1 95 259-353 293-399 (1606)
335 PRK14087 dnaA chromosomal repl 92.7 1.4 3E-05 46.8 12.2 43 55-98 143-190 (450)
336 KOG0729 26S proteasome regulat 92.7 4.4 9.5E-05 39.1 14.0 77 14-93 173-250 (435)
337 TIGR02639 ClpA ATP-dependent C 92.6 0.83 1.8E-05 51.7 11.1 17 54-70 204-220 (731)
338 COG1198 PriA Primosomal protei 92.6 0.34 7.3E-06 53.8 7.7 74 257-331 244-318 (730)
339 PRK09165 replicative DNA helic 92.6 0.82 1.8E-05 49.1 10.5 146 54-202 218-392 (497)
340 TIGR01243 CDC48 AAA family ATP 92.6 1.2 2.5E-05 50.5 12.3 21 54-74 488-508 (733)
341 PRK11034 clpA ATP-dependent Cl 92.6 0.98 2.1E-05 50.9 11.4 19 53-71 207-225 (758)
342 PRK06871 DNA polymerase III su 92.5 1 2.3E-05 45.4 10.5 32 39-70 3-41 (325)
343 PF05496 RuvB_N: Holliday junc 92.4 0.21 4.6E-06 47.2 5.0 21 55-75 52-72 (233)
344 PRK10416 signal recognition pa 92.4 6.2 0.00013 39.8 15.9 53 157-213 195-254 (318)
345 PRK14086 dnaA chromosomal repl 92.4 1.3 2.8E-05 48.3 11.6 43 55-97 316-362 (617)
346 COG0464 SpoVK ATPases of the A 92.4 1.2 2.5E-05 48.0 11.4 39 54-93 277-315 (494)
347 PRK13822 conjugal transfer cou 92.2 0.15 3.3E-06 56.1 4.5 59 54-112 225-284 (641)
348 TIGR00665 DnaB replicative DNA 92.2 0.8 1.7E-05 48.4 9.7 146 53-203 195-355 (434)
349 PRK08006 replicative DNA helic 92.2 1.8 4E-05 46.1 12.3 145 54-202 225-385 (471)
350 TIGR01243 CDC48 AAA family ATP 92.1 0.87 1.9E-05 51.5 10.5 20 52-71 211-230 (733)
351 COG1200 RecG RecG-like helicas 92.0 0.77 1.7E-05 49.9 9.2 76 256-331 309-389 (677)
352 CHL00181 cbbX CbbX; Provisiona 92.0 2.6 5.7E-05 41.8 12.5 20 53-72 59-78 (287)
353 PRK11773 uvrD DNA-dependent he 92.0 0.23 5E-06 56.1 5.7 63 37-101 8-77 (721)
354 PRK05636 replicative DNA helic 92.0 0.74 1.6E-05 49.4 9.2 141 56-201 268-423 (505)
355 TIGR01075 uvrD DNA helicase II 91.9 0.24 5.3E-06 55.8 5.8 63 37-101 3-72 (715)
356 PRK14950 DNA polymerase III su 91.9 1.8 3.8E-05 47.7 12.2 17 55-71 40-56 (585)
357 PRK14088 dnaA chromosomal repl 91.9 2.2 4.8E-05 45.1 12.6 17 55-71 132-148 (440)
358 TIGR02767 TraG-Ti Ti-type conj 91.9 0.21 4.5E-06 54.8 4.9 58 54-111 212-271 (623)
359 PRK14721 flhF flagellar biosyn 91.8 3.8 8.2E-05 42.8 13.9 55 158-216 269-324 (420)
360 KOG0339 ATP-dependent RNA heli 91.8 1.3 2.7E-05 46.4 9.9 70 258-331 296-375 (731)
361 PRK04328 hypothetical protein; 91.7 0.14 3E-06 49.7 3.1 51 52-103 22-75 (249)
362 PRK00771 signal recognition pa 91.6 5.6 0.00012 41.9 15.0 48 159-210 176-224 (437)
363 KOG0734 AAA+-type ATPase conta 91.6 1.3 2.9E-05 46.7 10.0 64 146-209 384-453 (752)
364 PRK14963 DNA polymerase III su 91.6 1.4 3E-05 47.4 10.7 16 56-71 39-54 (504)
365 COG2805 PilT Tfp pilus assembl 91.5 2.1 4.7E-05 42.1 10.8 14 56-69 128-141 (353)
366 PRK03992 proteasome-activating 91.5 1.8 4E-05 44.9 11.3 19 54-72 166-184 (389)
367 PRK06321 replicative DNA helic 91.5 1.5 3.3E-05 46.7 10.8 153 46-202 215-388 (472)
368 PRK06964 DNA polymerase III su 91.4 1.5 3.3E-05 44.5 10.3 33 39-71 2-39 (342)
369 PRK06995 flhF flagellar biosyn 91.4 9.9 0.00022 40.5 16.6 54 158-215 334-388 (484)
370 PRK09112 DNA polymerase III su 91.3 5.1 0.00011 41.0 14.1 43 156-204 139-181 (351)
371 PTZ00361 26 proteosome regulat 91.3 1.3 2.8E-05 46.6 10.0 22 53-74 217-238 (438)
372 KOG1513 Nuclear helicase MOP-3 91.3 0.15 3.2E-06 55.6 3.0 74 301-374 850-934 (1300)
373 PRK06090 DNA polymerase III su 91.3 1.6 3.5E-05 43.9 10.2 33 38-70 3-42 (319)
374 KOG2028 ATPase related to the 91.2 0.99 2.1E-05 45.4 8.3 46 29-75 136-184 (554)
375 PRK14970 DNA polymerase III su 91.2 1.8 3.9E-05 44.5 10.9 49 6-70 5-56 (367)
376 PRK14954 DNA polymerase III su 91.1 1.6 3.5E-05 48.0 10.8 42 156-203 125-166 (620)
377 PRK13876 conjugal transfer cou 91.1 0.2 4.4E-06 55.3 3.9 55 54-109 145-200 (663)
378 TIGR01242 26Sp45 26S proteasom 91.1 1.7 3.6E-05 44.8 10.5 20 53-72 156-175 (364)
379 KOG1133 Helicase of the DEAD s 91.1 0.31 6.6E-06 52.6 5.0 39 33-71 9-52 (821)
380 PRK08506 replicative DNA helic 91.1 1.1 2.4E-05 47.9 9.3 144 54-202 193-351 (472)
381 COG1219 ClpX ATP-dependent pro 91.1 0.23 4.9E-06 49.0 3.7 20 54-73 98-117 (408)
382 PRK10689 transcription-repair 91.1 1.5 3.2E-05 51.9 11.0 75 257-331 648-727 (1147)
383 TIGR01074 rep ATP-dependent DN 91.0 0.4 8.8E-06 53.6 6.3 61 38-100 1-68 (664)
384 PRK06647 DNA polymerase III su 91.0 1.7 3.6E-05 47.4 10.7 18 55-72 40-57 (563)
385 PRK11054 helD DNA helicase IV; 91.0 0.63 1.4E-05 51.9 7.6 62 37-100 195-263 (684)
386 KOG0298 DEAD box-containing he 90.9 0.29 6.3E-06 56.2 4.9 146 53-213 374-559 (1394)
387 PHA03368 DNA packaging termina 90.9 3.4 7.4E-05 45.2 12.6 76 22-101 227-307 (738)
388 PHA00350 putative assembly pro 90.7 1.1 2.4E-05 46.3 8.5 24 56-79 4-31 (399)
389 TIGR02880 cbbX_cfxQ probable R 90.7 2.1 4.6E-05 42.4 10.4 17 54-70 59-75 (284)
390 PF05876 Terminase_GpA: Phage 90.5 0.68 1.5E-05 50.4 7.2 63 38-100 16-85 (557)
391 TIGR02397 dnaX_nterm DNA polym 90.5 2.5 5.4E-05 43.1 11.1 48 7-70 3-53 (355)
392 PRK07940 DNA polymerase III su 90.4 2.4 5.1E-05 44.1 10.8 49 156-210 115-163 (394)
393 PF10593 Z1: Z1 domain; Inter 90.4 1 2.3E-05 43.3 7.7 89 282-375 110-203 (239)
394 PRK07004 replicative DNA helic 90.4 1.7 3.7E-05 46.2 9.9 145 53-202 213-373 (460)
395 PRK13833 conjugal transfer pro 90.2 0.78 1.7E-05 46.2 6.9 53 38-90 128-186 (323)
396 PRK14701 reverse gyrase; Provi 90.2 1.6 3.4E-05 53.3 10.5 62 257-318 121-188 (1638)
397 PRK05986 cob(I)alamin adenolsy 90.2 2.2 4.9E-05 39.3 9.3 55 150-207 107-161 (191)
398 COG3267 ExeA Type II secretory 90.2 2.3 5E-05 40.9 9.5 37 50-86 47-86 (269)
399 TIGR03880 KaiC_arch_3 KaiC dom 90.1 3.4 7.3E-05 39.2 11.0 50 53-103 16-68 (224)
400 TIGR00064 ftsY signal recognit 90.1 12 0.00027 36.7 15.1 50 55-104 74-129 (272)
401 COG3973 Superfamily I DNA and 90.0 1.1 2.3E-05 48.1 7.7 64 42-106 216-288 (747)
402 PRK06749 replicative DNA helic 89.9 2.9 6.3E-05 44.0 11.2 33 54-86 187-222 (428)
403 TIGR00602 rad24 checkpoint pro 89.9 1.9 4.1E-05 47.5 10.0 18 55-72 112-129 (637)
404 PRK09087 hypothetical protein; 89.9 2.3 5E-05 40.6 9.6 18 54-71 45-62 (226)
405 TIGR01425 SRP54_euk signal rec 89.9 9 0.00019 40.2 14.5 51 55-105 102-158 (429)
406 PRK09354 recA recombinase A; P 89.8 1.4 3E-05 44.8 8.3 96 46-171 47-151 (349)
407 PF13177 DNA_pol3_delta2: DNA 89.7 2.2 4.9E-05 38.3 8.8 49 157-211 101-149 (162)
408 PRK06305 DNA polymerase III su 89.7 2.1 4.6E-05 45.4 9.9 17 55-71 41-57 (451)
409 PRK07993 DNA polymerase III su 89.6 2.3 5E-05 43.2 9.8 33 39-71 3-42 (334)
410 COG0593 DnaA ATPase involved i 89.6 1.4 3E-05 45.6 8.2 16 158-173 175-190 (408)
411 TIGR00959 ffh signal recogniti 89.5 12 0.00026 39.3 15.2 52 55-106 101-159 (428)
412 COG2255 RuvB Holliday junction 89.5 0.86 1.9E-05 44.4 6.1 21 54-74 53-73 (332)
413 cd03115 SRP The signal recogni 89.5 14 0.00031 33.2 14.2 16 56-71 3-18 (173)
414 PRK10867 signal recognition pa 89.5 5.3 0.00011 42.0 12.5 50 56-105 103-159 (433)
415 COG0513 SrmB Superfamily II DN 89.5 1.3 2.8E-05 47.8 8.3 67 261-331 102-179 (513)
416 TIGR02640 gas_vesic_GvpN gas v 89.5 0.66 1.4E-05 45.4 5.6 40 45-84 13-52 (262)
417 TIGR01073 pcrA ATP-dependent D 89.4 0.6 1.3E-05 52.8 6.0 63 37-101 3-72 (726)
418 KOG2543 Origin recognition com 89.4 1.9 4.1E-05 43.8 8.6 48 158-207 115-162 (438)
419 TIGR00678 holB DNA polymerase 89.4 3.5 7.6E-05 37.9 10.2 17 156-172 94-110 (188)
420 cd00983 recA RecA is a bacter 89.3 1.9 4.2E-05 43.4 8.8 96 46-171 42-146 (325)
421 PF05127 Helicase_RecD: Helica 89.2 0.35 7.6E-06 44.1 3.2 116 57-204 1-124 (177)
422 PHA03333 putative ATPase subun 89.2 7.5 0.00016 42.9 13.6 51 50-100 184-238 (752)
423 TIGR02012 tigrfam_recA protein 89.1 1.9 4.2E-05 43.3 8.7 96 46-171 42-146 (321)
424 TIGR02785 addA_Gpos recombinat 89.0 0.74 1.6E-05 55.1 6.6 61 38-100 1-67 (1232)
425 COG1223 Predicted ATPase (AAA+ 88.9 6.5 0.00014 38.0 11.4 38 54-93 152-190 (368)
426 PRK13894 conjugal transfer ATP 88.9 0.85 1.8E-05 45.9 6.0 53 38-90 132-190 (319)
427 PRK14723 flhF flagellar biosyn 88.9 9.1 0.0002 43.0 14.4 54 158-215 263-317 (767)
428 TIGR02782 TrbB_P P-type conjug 88.8 1.4 3E-05 44.0 7.4 53 38-90 116-174 (299)
429 TIGR00416 sms DNA repair prote 88.8 3.9 8.4E-05 43.4 11.1 56 46-102 82-145 (454)
430 COG4962 CpaF Flp pilus assembl 88.7 1 2.2E-05 45.2 6.1 58 33-90 152-212 (355)
431 TIGR03346 chaperone_ClpB ATP-d 88.6 3.7 8E-05 47.3 11.7 17 54-70 195-211 (852)
432 COG2812 DnaX DNA polymerase II 88.5 0.85 1.8E-05 48.7 5.9 41 156-205 117-159 (515)
433 TIGR02238 recomb_DMC1 meiotic 88.5 1.7 3.7E-05 43.7 7.9 42 47-88 85-140 (313)
434 PRK13851 type IV secretion sys 88.5 0.68 1.5E-05 47.1 5.1 41 50-90 159-201 (344)
435 PRK09376 rho transcription ter 88.5 2.9 6.4E-05 43.0 9.5 18 52-69 168-185 (416)
436 PRK13880 conjugal transfer cou 88.5 0.31 6.7E-06 53.9 2.8 56 54-109 176-233 (636)
437 COG2804 PulE Type II secretory 88.5 0.55 1.2E-05 49.4 4.4 31 39-69 242-274 (500)
438 PRK10865 protein disaggregatio 88.5 3.8 8.2E-05 47.2 11.6 17 54-70 200-216 (857)
439 TIGR00767 rho transcription te 88.4 1.6 3.4E-05 45.1 7.6 20 52-71 167-186 (415)
440 PRK08451 DNA polymerase III su 88.4 1.6 3.4E-05 47.1 7.9 41 157-203 116-156 (535)
441 KOG0991 Replication factor C, 88.4 1.4 3.1E-05 41.7 6.5 19 54-72 49-67 (333)
442 PRK09302 circadian clock prote 88.4 2.5 5.4E-05 45.7 9.6 101 53-171 273-376 (509)
443 TIGR00708 cobA cob(I)alamin ad 88.3 2.7 5.8E-05 38.2 8.2 54 151-207 90-143 (173)
444 PRK07773 replicative DNA helic 88.2 1.9 4.1E-05 49.9 9.0 145 55-203 219-377 (886)
445 KOG0331 ATP-dependent RNA heli 88.2 2.2 4.8E-05 45.4 8.6 90 258-351 165-272 (519)
446 PRK00080 ruvB Holliday junctio 88.2 2.2 4.7E-05 43.2 8.5 18 54-71 52-69 (328)
447 PRK14971 DNA polymerase III su 88.0 2.7 5.8E-05 46.4 9.6 46 156-207 119-164 (614)
448 KOG0347 RNA helicase [RNA proc 87.9 1.2 2.7E-05 46.9 6.5 56 257-316 262-321 (731)
449 CHL00195 ycf46 Ycf46; Provisio 87.9 2.8 6E-05 44.9 9.4 18 54-71 260-277 (489)
450 PF01443 Viral_helicase1: Vira 87.9 0.97 2.1E-05 43.0 5.5 14 56-69 1-14 (234)
451 PRK08699 DNA polymerase III su 87.8 4.6 9.9E-05 40.9 10.5 32 40-71 3-39 (325)
452 PRK13900 type IV secretion sys 87.6 0.78 1.7E-05 46.5 4.8 40 50-89 157-198 (332)
453 CHL00095 clpC Clp protease ATP 87.6 3.4 7.4E-05 47.4 10.6 18 54-71 201-218 (821)
454 KOG0733 Nuclear AAA ATPase (VC 87.6 3.6 7.8E-05 44.3 9.6 54 14-70 186-240 (802)
455 TIGR02237 recomb_radB DNA repa 87.5 3.2 7E-05 38.8 8.8 35 53-87 12-49 (209)
456 cd01130 VirB11-like_ATPase Typ 87.5 1.4 3E-05 40.6 6.1 33 37-69 8-41 (186)
457 KOG1513 Nuclear helicase MOP-3 87.4 0.83 1.8E-05 50.1 5.0 162 38-204 264-455 (1300)
458 cd01128 rho_factor Transcripti 87.3 3.3 7.2E-05 40.1 8.8 20 50-69 13-32 (249)
459 COG0470 HolB ATPase involved i 87.3 2.4 5.1E-05 42.5 8.2 42 157-204 108-149 (325)
460 KOG0742 AAA+-type ATPase [Post 87.2 2.2 4.8E-05 43.6 7.6 17 54-70 385-401 (630)
461 COG1435 Tdk Thymidine kinase [ 87.1 2.2 4.7E-05 39.4 6.9 34 55-88 6-42 (201)
462 cd00268 DEADc DEAD-box helicas 87.1 3.6 7.8E-05 38.1 8.8 71 257-331 68-148 (203)
463 TIGR03345 VI_ClpV1 type VI sec 87.0 6.6 0.00014 45.2 12.3 29 42-70 570-613 (852)
464 KOG0738 AAA+-type ATPase [Post 87.0 4.4 9.6E-05 41.3 9.5 17 54-70 246-262 (491)
465 COG4185 Uncharacterized protei 86.8 0.9 2E-05 40.4 4.1 38 140-177 77-125 (187)
466 COG0466 Lon ATP-dependent Lon 86.6 1.9 4.2E-05 47.2 7.2 16 53-68 350-365 (782)
467 COG0542 clpA ATP-binding subun 86.5 1.7 3.7E-05 48.5 7.0 28 42-69 495-537 (786)
468 PRK12726 flagellar biosynthesi 86.5 20 0.00043 37.0 14.0 54 157-214 284-338 (407)
469 PF01637 Arch_ATPase: Archaeal 86.5 7 0.00015 36.6 10.6 43 160-203 120-165 (234)
470 cd01129 PulE-GspE PulE/GspE Th 86.4 1.6 3.5E-05 42.7 6.2 31 39-69 64-96 (264)
471 cd00561 CobA_CobO_BtuR ATP:cor 86.3 7.5 0.00016 34.8 9.8 53 151-206 88-140 (159)
472 KOG0733 Nuclear AAA ATPase (VC 86.2 6.4 0.00014 42.5 10.6 57 13-70 506-562 (802)
473 PLN03187 meiotic recombination 86.2 2.3 5E-05 43.2 7.3 35 54-88 127-170 (344)
474 COG0556 UvrB Helicase subunit 86.1 12 0.00027 39.7 12.4 123 77-213 445-567 (663)
475 TIGR01054 rgy reverse gyrase. 86.0 1.5 3.2E-05 52.0 6.6 60 258-317 121-187 (1171)
476 PRK08058 DNA polymerase III su 85.8 5.9 0.00013 40.2 10.1 47 156-208 108-154 (329)
477 PRK10733 hflB ATP-dependent me 85.8 5.2 0.00011 44.5 10.5 19 54-72 186-204 (644)
478 TIGR01547 phage_term_2 phage t 85.8 5 0.00011 41.8 9.9 35 56-90 4-44 (396)
479 COG3598 RepA RecA-family ATPas 85.7 9.4 0.0002 38.1 10.7 113 42-172 77-208 (402)
480 PRK09183 transposase/IS protei 85.6 1.3 2.8E-05 43.3 5.0 43 50-93 99-144 (259)
481 TIGR03345 VI_ClpV1 type VI sec 85.5 7.5 0.00016 44.7 11.8 29 42-70 191-225 (852)
482 TIGR03499 FlhF flagellar biosy 85.4 2.7 5.9E-05 41.6 7.3 17 54-70 195-211 (282)
483 KOG1806 DEAD box containing he 85.4 1.2 2.6E-05 50.2 5.1 69 37-105 737-810 (1320)
484 PF05729 NACHT: NACHT domain 85.4 9.9 0.00022 33.4 10.5 43 159-201 82-128 (166)
485 TIGR00614 recQ_fam ATP-depende 85.4 2.3 5.1E-05 45.4 7.3 60 258-317 51-110 (470)
486 PRK10436 hypothetical protein; 85.0 1.8 3.8E-05 46.0 6.0 31 39-69 202-234 (462)
487 KOG0735 AAA+-type ATPase [Post 84.9 15 0.00033 40.5 12.7 54 15-69 664-717 (952)
488 PRK11634 ATP-dependent RNA hel 84.9 3.3 7.1E-05 45.9 8.3 71 257-331 73-154 (629)
489 PF00437 T2SE: Type II/IV secr 84.6 1 2.2E-05 44.2 3.8 40 51-90 125-167 (270)
490 KOG0745 Putative ATP-dependent 84.2 1.1 2.3E-05 46.3 3.7 29 54-82 227-256 (564)
491 COG0465 HflB ATP-dependent Zn 84.0 7.2 0.00016 42.4 10.1 54 14-70 146-200 (596)
492 TIGR02533 type_II_gspE general 84.0 1.7 3.7E-05 46.5 5.5 31 39-69 226-258 (486)
493 cd01125 repA Hexameric Replica 83.6 15 0.00032 35.2 11.4 30 56-85 4-48 (239)
494 TIGR01389 recQ ATP-dependent D 83.2 3.4 7.3E-05 45.6 7.6 59 259-317 54-112 (591)
495 PF03969 AFG1_ATPase: AFG1-lik 83.2 17 0.00037 37.3 12.2 17 53-69 62-78 (362)
496 TIGR02639 ClpA ATP-dependent C 83.1 1.8 4E-05 48.9 5.5 16 56-71 487-502 (731)
497 KOG0740 AAA+-type ATPase [Post 83.0 6.1 0.00013 41.1 8.7 34 54-87 187-220 (428)
498 COG2909 MalT ATP-dependent tra 83.0 8.2 0.00018 43.3 10.1 40 159-203 130-170 (894)
499 TIGR02538 type_IV_pilB type IV 82.9 2.3 4.9E-05 46.6 6.0 31 39-69 300-332 (564)
500 KOG0730 AAA+-type ATPase [Post 82.8 9 0.0002 41.7 10.1 55 13-70 429-485 (693)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-90 Score=715.28 Aligned_cols=407 Identities=43% Similarity=0.722 Sum_probs=374.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
+.+...|+++||+..||+.|.++|+++++|+|++++||||+|||+|||+|++...|.+|||+|+++||+||+++|+..|+
T Consensus 3 ~~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi 82 (590)
T COG0514 3 EEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGI 82 (590)
T ss_pred hHHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (524)
.+..+++..+..++..+...+..+. ++++|.+||.+.++.++..+. ...+.++|||||||+|+|||||||+|++
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHH
Confidence 9999999999999999999999886 999999999999998887777 4469999999999999999999999999
Q ss_pred HHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEE
Q 009843 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263 (524)
Q Consensus 184 l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~II 263 (524)
|+.++..+|++|+++||||+++.+..||...|++..+.++..+++|||++|.+..+.....++..+.+ +.....+++||
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GII 235 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGII 235 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999987643344443332 22556778999
Q ss_pred EeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHH
Q 009843 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (524)
Q Consensus 264 f~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (524)
||.||+.+|.+++.|.+.|+.+..|||||+.++|+.++++|.+++++|||||.|||||||+||||+||||++|.|+++|+
T Consensus 236 Yc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYy 315 (590)
T COG0514 236 YCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYY 315 (590)
T ss_pred EEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccChhHHHHhcCcCCCCCCCCCcc
Q 009843 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYWDVWPVLPIG 423 (524)
Q Consensus 344 Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~crr~~~l~~~~~~~~~~~~~~ 423 (524)
|++|||||||.++.|++||++.|....+++++...............+.+|..||+...|||..+++
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~------------- 382 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQTCRRLVLLK------------- 382 (590)
T ss_pred HHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccchHHHHHH-------------
Confidence 9999999999999999999999999999998876655555666778899999999998899999999
Q ss_pred cchhccccccccccCCcCCCCcccCCCCCCCCChhhhHHHH
Q 009843 424 WFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLG 464 (524)
Q Consensus 424 ~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~~~~~~~~ 464 (524)
|| ||+ .+..|.+ ||+|.++....+..+
T Consensus 383 ----------yf--ge~-~~~~c~~-c~~c~~~~~~~d~t~ 409 (590)
T COG0514 383 ----------YF--GED-EPEPCGN-CDNCLDTPKQFDGTI 409 (590)
T ss_pred ----------hc--Ccc-ccccccC-CCcccCcchhcchHH
Confidence 99 998 6778996 999998765444333
No 2
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-88 Score=654.91 Aligned_cols=422 Identities=38% Similarity=0.677 Sum_probs=386.2
Q ss_pred hhHHHHHHHHHHcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 009843 22 EKEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r-~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
....+.++|+++||+++|. +.|+.|+..+..+ +||+|.||||+|||||||||+|..++++||++|+++|++||++.|.
T Consensus 3 ~Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~ 82 (641)
T KOG0352|consen 3 MERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLK 82 (641)
T ss_pred hHHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHH
Confidence 4567889999999999995 8999999998876 6999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH
Q 009843 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (524)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (524)
++.+++..+++..+..++..+..++...++.++++|.|||..+|.+|...|..+++.+.+.++|||||||+++|||||||
T Consensus 83 ~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 83 RLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred hcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCe-EEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhc--
Q 009843 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-- 256 (524)
Q Consensus 180 ~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~-~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~-- 256 (524)
+|..|+.++..++++|.++||||++++|.+||..+|.+.+|+ ++..+..|.|++|.+..+....+-+..|.++-...
T Consensus 163 DYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 163 DYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLG 242 (641)
T ss_pred chhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998 56678889999999999988888888888876432
Q ss_pred -----------CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCC
Q 009843 257 -----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (524)
Q Consensus 257 -----------~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p 325 (524)
..+++||||.||+.||+++-.|...|+++..||+|+...+|.+++++|++++++||+||..||||+|+|
T Consensus 243 ~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp 322 (641)
T KOG0352|consen 243 KHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKP 322 (641)
T ss_pred ChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCc
Confidence 135899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC-------CCCcchhhHHHHHHHHHhh
Q 009843 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS-------KNSQSFSTRERWLITVKVL 398 (524)
Q Consensus 326 ~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~-------~~~~~~~~~~~l~~~~~~~ 398 (524)
+|||||||++|+++..|||++|||||||.++.|-+||+.+|...+.+++++... ++.+.......+..|++||
T Consensus 323 ~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 323 DVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred ceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986432 2233444566789999999
Q ss_pred hccChhHHHHhcCcCCCCCCCCCcccchhccccccccccCCcCCCCcccCCCCCCCCChhhhHHHHHHHHHH
Q 009843 399 DVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAV 470 (524)
Q Consensus 399 ~~~~crr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~~~~~~~~~~~~~~ 470 (524)
|...|||..+.. || |+..+ +|..+||.|+.|....+.++......
T Consensus 403 E~~~CRH~~ia~-----------------------fF--gD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~ 447 (641)
T KOG0352|consen 403 ESARCRHVSIAS-----------------------FF--DDTEC--PCKTNCDYCRDPTKTIRNVEAFINSE 447 (641)
T ss_pred HHcccchHHHHH-----------------------hc--CCCCC--CCCCCccccCCHHHHHHHHHHHHHhh
Confidence 999999999999 99 98765 68889998887765554444434433
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1e-81 Score=687.66 Aligned_cols=413 Identities=40% Similarity=0.677 Sum_probs=371.5
Q ss_pred CCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHH
Q 009843 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l 98 (524)
.+++...+...++++||+.+|||.|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||+||+..|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCC
Q 009843 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (524)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f 177 (524)
...|+++..+++.....+...+...+......++|+|+|||.+.... ++..+......+.+.+||||||||+++|||+|
T Consensus 521 ~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 521 LQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred HhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 99999999999999988887777777664455899999999987654 45555555555679999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhc-
Q 009843 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256 (524)
Q Consensus 178 r~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~- 256 (524)
||+|+.|..++..+|++|+++||||+++.+..++...+++.++.++..+++|+|+.|.+..+. ...+..+.++++..
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~~ 678 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENH 678 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999887654 23456777777653
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p 336 (524)
.+.++||||.|++.|+.+++.|...|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++|
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCC--------------cchhhHHHHHHHHHhhhcc-
Q 009843 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS--------------QSFSTRERWLITVKVLDVA- 401 (524)
Q Consensus 337 ~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~- 401 (524)
+|++.|+||+|||||+|.+|.|++||+..|...+++++........ ......+.|.+|+.||++.
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~ 838 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEV 838 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChH
Confidence 9999999999999999999999999999999999999865432210 1123456789999999985
Q ss_pred ChhHHHHhcCcCCCCCCCCCcccchhccccccccccCCcCCCCcccCCCCCCCCChh
Q 009843 402 GKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL 458 (524)
Q Consensus 402 ~crr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~~ 458 (524)
.|||+.+|. || ||++....|+++||||..+..
T Consensus 839 ~CRR~~lL~-----------------------yF--GE~~~~~~C~~~CDnC~~~~~ 870 (1195)
T PLN03137 839 DCRRFLQLV-----------------------HF--GEKFDSTNCKKTCDNCSSSKS 870 (1195)
T ss_pred hhHHHHHHH-----------------------Hc--ccccCccCCCCCCCCCCCCCc
Confidence 899999999 99 999766689988999987553
No 4
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-83 Score=699.08 Aligned_cols=451 Identities=44% Similarity=0.719 Sum_probs=399.6
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (524)
.++....|..+||+..||+.|.+||.+++.|+|++|.||||+|||+|||+|++..++.+|||+|+++||++|+..|...+
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHH
Q 009843 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (524)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (524)
|++.++++.+...+...+++.+..+.+.++++|+|||.+...+ +...+..+...+.+.++|||||||+++|||||||+|
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 9999999999999999999999999889999999999887655 445667777777899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHH-HhcCCcc
Q 009843 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL-KANGDTC 260 (524)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l-~~~~~~~ 260 (524)
+.++.++..+|++|+|+||||+++.++.||+..|++.+|.++..+|+|+|++|+|..+.... ....+...+ ..++..+
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~-~~~~~~~~~~~~~~~~s 487 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKD-ALLDILEESKLRHPDQS 487 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCcc-chHHHHHHhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999887433 333344444 4467889
Q ss_pred EEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHH
Q 009843 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (524)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~ 340 (524)
+||||.++++|+.++..|+..|+.+..||+||++.+|..++++|..++++|+|||.|||||||+||||+||||++|+|+|
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E 567 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFE 567 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcch-hhHHHHHHHHHhhhc-cChhHHHHhcCcCCCCCC
Q 009843 341 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF-STRERWLITVKVLDV-AGKRFSRVLGNRYWDVWP 418 (524)
Q Consensus 341 ~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~crr~~~l~~~~~~~~~ 418 (524)
.|||++|||||||.++.|++||+..|..+++.++........... .....+.+|+.||++ +.|||+.++.
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~-------- 639 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILE-------- 639 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHH--------
Confidence 999999999999999999999999999999999988733222222 467789999999995 8999999999
Q ss_pred CCCcccchhccccccccccCCcCCCCccc--CCCCCCCCChhhhHHHHHHHHHHhhcCCCceeeeecccccCCCCccccc
Q 009843 419 VLPIGWFLSLVLLYYSFHLLKQIPVSLCK--NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSEFW 496 (524)
Q Consensus 419 ~~~~~~~~~~~~~~~~f~~~e~~~~~~c~--~~Cd~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
|| ||.+....|. +.||+|.....+.-.+.+++....+.......+.+++..+.......||
T Consensus 640 ---------------~f--ge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~~~~~~t~~~~~~~~~ 702 (941)
T KOG0351|consen 640 ---------------YF--GEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYTLSERFTLAAIEDVGG 702 (941)
T ss_pred ---------------hc--ccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeeeccchhhhhhHHhccc
Confidence 99 9998888999 7999999987666666666665555444444444444444444445555
Q ss_pred ccc
Q 009843 497 NRD 499 (524)
Q Consensus 497 ~~~ 499 (524)
+..
T Consensus 703 g~~ 705 (941)
T KOG0351|consen 703 GTL 705 (941)
T ss_pred ccH
Confidence 543
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.7e-80 Score=592.81 Aligned_cols=408 Identities=38% Similarity=0.707 Sum_probs=383.7
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~ 96 (524)
..++|+.++....|+..|....|||.|.++|++.+.|+|+++++|||+|||+|||+|+|...|.++||+|+++||++|..
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil 152 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQIL 152 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCC
Q 009843 97 GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (524)
Q Consensus 97 ~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (524)
.|+.+||.+..++...+..+...+...+......++++|+|||.++. ..+++.|.+....+.+.+|.|||+||.++|||
T Consensus 153 ~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwgh 232 (695)
T KOG0353|consen 153 QLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH 232 (695)
T ss_pred HHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCc
Confidence 99999999999999999999888888888888889999999998876 46889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCc-hhhHHHHHHHHHH
Q 009843 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLK 254 (524)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~-~~~~~~~l~~~l~ 254 (524)
||||+|..|+.+.+.|+++|+++||||++..+..|....|++.....++.+|+|||++|+++.++. .++-.+++.++++
T Consensus 233 dfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~ 312 (695)
T KOG0353|consen 233 DFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIK 312 (695)
T ss_pred ccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875 3556778888886
Q ss_pred h-cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEe
Q 009843 255 A-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333 (524)
Q Consensus 255 ~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~ 333 (524)
. ..+.++||||-|+++||+++..|+..|+.+..||+.|.+++|.-+.+.|..|+++|+|||.+||||||+|+||+|||.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 4 578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHH-------------------------------------------HHhhcCCCCCCceEEEEeccccHHHH
Q 009843 334 NIPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRM 370 (524)
Q Consensus 334 ~~p~s~~~y~Q-------------------------------------------~~GRagR~G~~~~~i~~~~~~d~~~~ 370 (524)
++|+|++.||| +.||||||+.++.|++||...|..+.
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 99999999999 89999999999999999999999888
Q ss_pred HHHHHhccCCCCcchhhHHHHHHHHHhhhc-cChhHHHHhcCcCCCCCCCCCcccchhccccccccccCCcCCCCcccCC
Q 009843 371 EFILSKNQSKNSQSFSTRERWLITVKVLDV-AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNS 449 (524)
Q Consensus 371 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~crr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~ 449 (524)
..++.. .....+.|..|++||.. +.|||..+.+ +| .|.+.+..|+++
T Consensus 473 ssmv~~-------e~~g~q~ly~mv~y~~d~s~crrv~lae-----------------------hf--de~w~~~~c~k~ 520 (695)
T KOG0353|consen 473 SSMVQM-------ENTGIQKLYEMVRYAADISKCRRVKLAE-----------------------HF--DEAWEPEACNKM 520 (695)
T ss_pred HHHHHH-------HhhhHHHHHHHHHHHhhhHHHHHHHHHH-----------------------HH--HhhcCHHHHHHH
Confidence 887753 23356788999999998 7899999999 99 999999999999
Q ss_pred CCCCCCC
Q 009843 450 CDACKHP 456 (524)
Q Consensus 450 Cd~c~~~ 456 (524)
||||...
T Consensus 521 cd~c~~~ 527 (695)
T KOG0353|consen 521 CDNCCKD 527 (695)
T ss_pred hhhhccC
Confidence 9999753
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.8e-74 Score=622.51 Aligned_cols=409 Identities=41% Similarity=0.682 Sum_probs=366.1
Q ss_pred CCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHH
Q 009843 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l 98 (524)
.++..+.....|++.|||++|||+|.+++++++.|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 35666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009843 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (524)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (524)
+..|+.+..+++.............+..+. ++++|+|||.+.+..+...+. ...+++|||||||++++|||+||
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~----~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLA----HWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHh----hCCCCEEEEeCccccccccCccc
Confidence 999999999999988887777777776664 889999999998877665543 23589999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCC
Q 009843 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (524)
Q Consensus 179 ~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (524)
|.|..|..++..+|++|+++||||+++.+..++...+++.+|.+...+++++|+.|.+..+. ..+..+..++....+
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998876553 456677888887778
Q ss_pred ccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCC
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s 338 (524)
.++||||+|++.|+.+++.|++.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||++|.|
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccChhHHHHhcCcCCCCCC
Q 009843 339 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYWDVWP 418 (524)
Q Consensus 339 ~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~crr~~~l~~~~~~~~~ 418 (524)
.++|+||+|||||+|.+|.|++||++.|...++.++..... ..+.......+..|..||++..|||+.+|+
T Consensus 317 ~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~Crr~~~l~-------- 387 (607)
T PRK11057 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPA-GQQQDIERHKLNAMGAFAEAQTCRRLVLLN-------- 387 (607)
T ss_pred HHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcccCHHHHHHH--------
Confidence 99999999999999999999999999999888888765432 122334456788999999999999999999
Q ss_pred CCCcccchhccccccccccCCcCCCCcccCCCCCCCCChhhhHHHH
Q 009843 419 VLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLG 464 (524)
Q Consensus 419 ~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~~~~~~~~ 464 (524)
|| ||... ..|+ .||||.++....+.++
T Consensus 388 ---------------yf--~e~~~-~~c~-~cd~c~~~~~~~~~~~ 414 (607)
T PRK11057 388 ---------------YF--GEGRQ-EPCG-NCDICLDPPKQYDGLE 414 (607)
T ss_pred ---------------Hh--CCCCC-CCCC-CCCCCCCcccccccHH
Confidence 99 99753 4687 7999998765444433
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.5e-74 Score=623.65 Aligned_cols=396 Identities=40% Similarity=0.688 Sum_probs=359.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009843 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (524)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (524)
...|++.|||++|||.|.++|++++.|+|++++||||+|||+||++|++...+.++||+|+++||+||++.|+.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009843 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (524)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (524)
.+++.....+...+...+..+. ++++|+|||.+.++.+...+ ....+++||||||||+++|||+|||.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999999888888777777765 89999999999887665443 23469999999999999999999999999999
Q ss_pred HHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeC
Q 009843 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (524)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~ 266 (524)
++..+|+.|++++|||+++.+..++...+++.++.++..+++++|+.+.+.... .+...+.++++...+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999887653 45677888888777789999999
Q ss_pred ccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHH
Q 009843 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (524)
Q Consensus 267 s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (524)
|++.|+.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||++++||||+|+|++|||+++|.|+++|+||+
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccChhHHHHhcCcCCCCCCCCCcccch
Q 009843 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYWDVWPVLPIGWFL 426 (524)
Q Consensus 347 GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~crr~~~l~~~~~~~~~~~~~~~~~ 426 (524)
|||||+|.++.|+++|++.|...++.++................+..|..||++..|||..+++
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~---------------- 376 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYKQIEREKLRAMIAYCETQTCRRAYILR---------------- 376 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHcccccHhHHHHH----------------
Confidence 9999999999999999999999999888764333333334466788999999999999999999
Q ss_pred hccccccccccCCcCCCCcccCCCCCCCCChh
Q 009843 427 SLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL 458 (524)
Q Consensus 427 ~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~~ 458 (524)
|| ||.. ...|+ .||||..+..
T Consensus 377 -------~f--~~~~-~~~c~-~cd~c~~~~~ 397 (591)
T TIGR01389 377 -------YF--GENE-VEPCG-NCDNCLDPPK 397 (591)
T ss_pred -------hc--CCCC-CCCCC-CCCCCCCCCc
Confidence 99 8873 45787 6999987653
No 8
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-73 Score=602.25 Aligned_cols=374 Identities=47% Similarity=0.811 Sum_probs=337.9
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009843 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (524)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (524)
.|+++|||++|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.++..|+.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (524)
++.....+...+...+..+. ++++|+|||.+.+.. ++..+. ....+++|||||||++++|||+||+.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 99988887777777776554 889999999988764 444432 456799999999999999999999999999999
Q ss_pred HHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHH-hcCCccEEEEeC
Q 009843 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (524)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~IIf~~ 266 (524)
+..+|++|+++||||+++.+..++...+++..+.++..+++++|+.+.+..+. .+.+..+.+++. ...+.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~--~~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKT--PKILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCC--ccHHHHHHHHHHHhcCCCceEEEEC
Confidence 99999999999999999999999999999999999999999999999887764 256677888776 456667899999
Q ss_pred ccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHH
Q 009843 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (524)
Q Consensus 267 s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (524)
|++.|+.+++.|++.|+.+..|||+|++++|..++++|++|+++|||||++++||||+|+|++|||+++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccChhHHHHhc
Q 009843 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLG 410 (524)
Q Consensus 347 GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~crr~~~l~ 410 (524)
|||||+|.+|.|++||++.|...++.++....... +.....+.+..|..|++...|||..+++
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~crr~~l~~ 377 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ-QRTYKLKLYEMMEYCLNSSTCRRLILLS 377 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 99999999999999999999999999887644321 2233345567777888889999999999
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.8e-52 Score=434.86 Aligned_cols=343 Identities=20% Similarity=0.245 Sum_probs=273.5
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-------------CCeE
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIV 81 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-------------~~~~ 81 (524)
..|+++++++.+.+.|.. +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. +.++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 457778999999999998 89999999999999999999999999999999999999998741 3579
Q ss_pred EEeCcHHHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH-Hhhhcc
Q 009843 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSR 156 (524)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l-~~~~~~ 156 (524)
||++|+++|+.|+.+.+.. .++.+..+.++........ .+.. ..+++++||+.+.. .+ ......
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~---~~~IlV~TP~~l~~-----~l~~~~~~l 155 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLES---GVDILIGTTGRLID-----YAKQNHINL 155 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcC---CCCEEEECHHHHHH-----HHHcCCccc
Confidence 9999999999999887765 3677776666555433222 2222 25777777765421 11 123345
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---CCCC
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRP 230 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~ 230 (524)
..++++||||||++.+|| |..+ +..+...+| ..+.+++|||++..+.......+ .+|..+... ....
T Consensus 156 ~~v~~lViDEad~l~~~~--f~~~---i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~~~ 228 (423)
T PRK04837 156 GAIQVVVLDEADRMFDLG--FIKD---IRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKTGH 228 (423)
T ss_pred ccccEEEEecHHHHhhcc--cHHH---HHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcCCC
Confidence 679999999999999988 5544 444555665 34578999999998877554444 445443322 1122
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009843 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (524)
Q Consensus 231 ~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (524)
++...... .....+...|..+++.....++||||++++.|+.+++.|.+.|+.+..+||+|++++|..++++|++|+++
T Consensus 229 ~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 307 (423)
T PRK04837 229 RIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 307 (423)
T ss_pred ceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc
Confidence 33333322 23356777888888877778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhc
Q 009843 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 311 VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
|||||+++++|||+|+|++||||++|.+.+.|+||+||+||.|+.|.+++|+.+.|...+..+.+..
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~ 374 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 374 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999887777765443
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-51 Score=441.29 Aligned_cols=351 Identities=22% Similarity=0.318 Sum_probs=273.3
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----------CCeEE
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~l 82 (524)
...|+++++++.+.+.|++ .||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ++.+|
T Consensus 129 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~L 207 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVL 207 (545)
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 3456667889999999998 79999999999999999999999999999999999999998742 45799
Q ss_pred EeCcHHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhcc
Q 009843 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSR 156 (524)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~ 156 (524)
||+||++|+.|+.+.++.++ +......+....... ...+..+ .+++++||+.+ .++. .....
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q---~~~l~~~---~~IlVaTPgrL------~d~l~~~~~~l 275 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQ---IYALRRG---VEILIACPGRL------IDFLESNVTNL 275 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHH---HHHHHcC---CCEEEECHHHH------HHHHHcCCCCh
Confidence 99999999999999988864 444455444443322 1223322 56777776644 2222 22335
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc-C---CCCc
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F---NRPN 231 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~-~---~~~~ 231 (524)
..+++|||||||++.+|| |++.+..+ ...+ ++.+++++|||++..+.... ..+....+..+... . ...+
T Consensus 276 ~~v~~lViDEAd~mld~g--f~~~i~~i---l~~~~~~~q~l~~SAT~p~~v~~l~-~~l~~~~~v~i~vg~~~l~~~~~ 349 (545)
T PTZ00110 276 RRVTYLVLDEADRMLDMG--FEPQIRKI---VSQIRPDRQTLMWSATWPKEVQSLA-RDLCKEEPVHVNVGSLDLTACHN 349 (545)
T ss_pred hhCcEEEeehHHhhhhcc--hHHHHHHH---HHhCCCCCeEEEEEeCCCHHHHHHH-HHHhccCCEEEEECCCccccCCC
Confidence 568999999999999988 77666554 3333 57889999999988765533 33333344433321 1 1234
Q ss_pred ceEEEEeeCchhhHHHHHHHHHHhc--CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 009843 232 LFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (524)
Q Consensus 232 l~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (524)
+...+.... ...+...|.++++.. .+.++||||++++.|+.++..|...|+.+..+||++++++|..+++.|++|++
T Consensus 350 i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 350 IKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred eeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 443333322 134566666666653 46789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcc
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 384 (524)
+|||||+++++|||+|+|++||||++|.+++.|+||+||+||.|+.|.|++|++++|...+..+++......+..
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~v 503 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPV 503 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999999999888777776655444333
No 11
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-51 Score=422.05 Aligned_cols=347 Identities=26% Similarity=0.382 Sum_probs=280.2
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------------CCeEEE
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lv 83 (524)
.|+.+++.+++...|+. -||+.|+|+|.+.|+.+++|+|++..|.|||||||+|++|++.+ ++++||
T Consensus 92 ~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 56778899999999998 79999999999999999999999999999999999999999753 568999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhc--cC
Q 009843 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS--RG 157 (524)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~--~~ 157 (524)
++|||+|+.|....+.+++ +...++.++.+..... .++..+ +++ +++||+++.++.+... +.
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g---vdi------viaTPGRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG---VDV------VIATPGRLIDLLEEGSLNLS 238 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC---CcE------EEeCChHHHHHHHcCCcccc
Confidence 9999999999998888753 4455555555544332 223333 555 5666677666655443 55
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC-----CC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----RP 230 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-----~~ 230 (524)
.+.++|+||||.|.++| |+++.+.| ....| ..+++++|||++..++.--...+. +|..+..... ..
T Consensus 239 ~v~ylVLDEADrMldmG--Fe~qI~~I---l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~ 311 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLDMG--FEPQIRKI---LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKANH 311 (519)
T ss_pred ceeEEEeccHHhhhccc--cHHHHHHH---HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhhc
Confidence 79999999999999988 88776554 44552 457999999999999886666666 5554443322 23
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhc---CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 009843 231 NLFYEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (524)
Q Consensus 231 ~l~~~v~~~~~~~~~~~~l~~~l~~~---~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (524)
++...+...+ ...+...|..+|... .++++||||+|++.|++|+..|+..++++..+||+.++.+|+.+++.|++|
T Consensus 312 ~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 312 NIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred chhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC
Confidence 3443333333 345566666666553 567899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCc
Q 009843 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383 (524)
Q Consensus 308 ~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~ 383 (524)
+..|||||+++++|+|+|+|++||+||+|.+.++|+||+||+||.|+.|.+++|+...+......+.+........
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~ 466 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQT 466 (519)
T ss_pred CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999999999988887777665444433
No 12
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-51 Score=397.27 Aligned_cols=350 Identities=22% Similarity=0.282 Sum_probs=287.2
Q ss_pred ccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEe
Q 009843 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl 84 (524)
......|.++++.+++.+++++ .|+..|+++|+++|+.++.|+|++..|.||||||.+|.+|++.+ ...++|+
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 5566778889999999999999 79999999999999999999999999999999999999999864 5689999
Q ss_pred CcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---hhccC
Q 009843 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRG 157 (524)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~~~~~ 157 (524)
+|+|+|+.|+.+.+..+ |+.+..+.++......... .+.+ ..+ +++||+.+.+... ..+..
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~----L~kk--Phi------lVaTPGrL~dhl~~Tkgf~le 203 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ----LSKK--PHI------LVATPGRLWDHLENTKGFSLE 203 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHH----hhcC--CCE------EEeCcHHHHHHHHhccCccHH
Confidence 99999999988888775 6777777777665443221 1223 334 4566665544322 33345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCC---Ccce
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLF 233 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l~ 233 (524)
.++++|+||||.+.+.. |.+ .+..+.+.+| +.+.+++|||++..+.+- ....+.+|..+..+... +++.
T Consensus 204 ~lk~LVlDEADrlLd~d--F~~---~ld~ILk~ip~erqt~LfsATMt~kv~kL--~rasl~~p~~v~~s~ky~tv~~lk 276 (476)
T KOG0330|consen 204 QLKFLVLDEADRLLDMD--FEE---ELDYILKVIPRERQTFLFSATMTKKVRKL--QRASLDNPVKVAVSSKYQTVDHLK 276 (476)
T ss_pred HhHHHhhchHHhhhhhh--hHH---HHHHHHHhcCccceEEEEEeecchhhHHH--HhhccCCCeEEeccchhcchHHhh
Confidence 58899999999999855 664 4556666777 788999999999999873 35567778766654332 2332
Q ss_pred EEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
..+...+. ..+-..|..++++..+.++||||++...+..++-.|+..|+.+..+||.|++..|.-.++.|++|..+|||
T Consensus 277 Q~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv 355 (476)
T KOG0330|consen 277 QTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILV 355 (476)
T ss_pred hheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEE
Confidence 22222221 35566788889998889999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCC
Q 009843 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (524)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~ 381 (524)
||+++++|+|+|.|++|||||+|.+..+|+||+||+||.|.+|.++.+++..|.+.+..++.....+.
T Consensus 356 ~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 356 CTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred ecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998888877655443
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.6e-50 Score=425.41 Aligned_cols=342 Identities=21% Similarity=0.294 Sum_probs=268.8
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------------CCeEEE
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lv 83 (524)
.|+.+++++.+...|.+ +||..|+++|.++|+.+++|+|++++||||+|||++|++|++.. ..++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 36678899999999998 89999999999999999999999999999999999999998753 137999
Q ss_pred eCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCc
Q 009843 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (524)
Q Consensus 84 l~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l 159 (524)
|+||++|+.|+.+.++.+ ++....+.+......... .+. + ..+|+++||+.+.... .........+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~--~~~IiV~TP~rL~~~~----~~~~~~l~~v 150 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR-G--GVDVLVATPGRLLDLE----HQNAVKLDQV 150 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc-C--CCcEEEEChHHHHHHH----HcCCcccccc
Confidence 999999999999988874 455555555544333211 122 2 3678888887653211 0122345669
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCCcceEE
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~ 235 (524)
++|||||||++.+|| |.. .+..+...++ ..+++++|||+++.+.......+ .++..+.. ....+++...
T Consensus 151 ~~lViDEah~ll~~~--~~~---~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 151 EILVLDEADRMLDMG--FIH---DIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred eEEEeecHHHHhccc--cHH---HHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEecccccccceeEE
Confidence 999999999999988 443 3444555565 56799999999987765443333 34443321 2223344443
Q ss_pred EEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009843 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (524)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT 315 (524)
+...+ ...+...+..++......++||||+++..++.+++.|.+.|+.+..+||+|+.++|..++++|++|+++|||||
T Consensus 224 ~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 33332 23455566666766666789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
+++++|||+|+|++||||++|.+.++|+||+||+||+|..|.+++++...|...++.+.+.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988777766554
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.7e-50 Score=426.65 Aligned_cols=343 Identities=21% Similarity=0.290 Sum_probs=275.2
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
..|..+++.+.+...|.. .||..|+|+|.++++.+++|+|++++||||+|||++|.+|++.. ..+++|++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 357778999999999998 89999999999999999999999999999999999999999864 34799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccE
Q 009843 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (524)
+|+.|+.+.++.+ ++.+..+.++.+...... .+. ...+++++||+.+ ..+.. ......+++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~---~~~~IvV~Tp~rl------~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLE---HGAHIIVGTPGRI------LDHLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---Hhc---CCCCEEEEChHHH------HHHHHcCCccHHHCCE
Confidence 9999999888764 456666666655543322 222 2366777776644 22221 223456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec--cCCCCcceEEEEe
Q 009843 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRY 238 (524)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~--~~~~~~l~~~v~~ 238 (524)
+|+||||++.++| |... +..+...+| ..+++++|||+++.+....... +.+|..+.. ....+++...+..
T Consensus 151 lViDEad~~l~~g--~~~~---l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~i~~~~~~ 223 (460)
T PRK11776 151 LVLDEADRMLDMG--FQDA---IDAIIRQAPARRQTLLFSATYPEGIAAISQRF--QRDPVEVKVESTHDLPAIEQRFYE 223 (460)
T ss_pred EEEECHHHHhCcC--cHHH---HHHHHHhCCcccEEEEEEecCcHHHHHHHHHh--cCCCEEEEECcCCCCCCeeEEEEE
Confidence 9999999999988 6544 445556665 6789999999998876543333 345544432 2233334333332
Q ss_pred eCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009843 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (524)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~ 318 (524)
... ..+...+..++....+.++||||+|++.++.+++.|.+.|+.+..+||+|++.+|+.+++.|++|+++|||||+++
T Consensus 224 ~~~-~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 224 VSP-DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred eCc-HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 222 4578888888888777889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
++|||+|++++||+|++|.+.+.|+||+||+||.|..|.|++|+.+.|...+..+.+...
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999888777765443
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-50 Score=435.65 Aligned_cols=343 Identities=16% Similarity=0.223 Sum_probs=274.6
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-------------CCeEE
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-------------~~~~l 82 (524)
.|+++++.+.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ..++|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 57788999999999998 89999999999999999999999999999999999999998752 36899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhcc
Q 009843 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (524)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~ 156 (524)
||+||++|+.|+.+.++.+ ++.+..+.+........... . . ..+|+++||+.+.. .+.. ....
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l---~-~--~~dIiV~TP~rL~~-----~l~~~~~~~l 157 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL---Q-Q--GVDVIIATPGRLID-----YVKQHKVVSL 157 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH---h-C--CCCEEEECHHHHHH-----HHHhccccch
Confidence 9999999999999988875 45666677666554433222 2 1 26787777775422 1111 2334
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcc
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNL 232 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l 232 (524)
..+++|||||||++.+|| |... +..+...+| +.++++||||++..+.......+.......+.. .....++
T Consensus 158 ~~v~~lViDEAh~lld~g--f~~~---i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 158 HACEICVLDEADRMFDLG--FIKD---IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARV 232 (572)
T ss_pred hheeeeEecCHHHHhhcc--hHHH---HHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccce
Confidence 568899999999999988 5544 444555565 578999999999988776555543222222221 1222333
Q ss_pred eEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009843 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (524)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~Vl 312 (524)
...+... ....++..+..+++...+.++||||+|++.++.+++.|.+.|+.+..+||+|+..+|..+++.|++|+++||
T Consensus 233 ~q~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 233 RQRIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred eEEEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3333322 235677778888887777899999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
|||+++++|||+|+|++||||++|.+.+.|+||+||+||.|..|.|++|+...+...+..+.+.
T Consensus 312 VaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred EEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888777766554
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-50 Score=431.38 Aligned_cols=347 Identities=22% Similarity=0.313 Sum_probs=267.8
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc-------------CC
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KP 78 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~-------------~~ 78 (524)
.+...|+++++++.+...|++ .||..|+|+|.++|+.+++|+|+++.||||+|||++|++|++. .+
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 344556777899999999988 8999999999999999999999999999999999999999874 24
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--h
Q 009843 79 GIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--K 152 (524)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~--~ 152 (524)
+++|||+||++|+.|+.+.++.+ ++....+.++...... ...+.. ..+++++||+.+ ..+. .
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q---~~~l~~---~~~IiV~TPgrL------~~~l~~~ 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ---LYRIQQ---GVELIVGTPGRL------IDLLSKH 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH---HHHhcC---CCCEEEECHHHH------HHHHHcC
Confidence 68999999999999988877764 3444444444332221 122222 256766666643 2222 1
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCc
Q 009843 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN 231 (524)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~ 231 (524)
......+++|||||||++.+|| |++.+. .+...+++.+++++|||+++.+... ...+ +.++..+.. ...+++
T Consensus 265 ~~~l~~v~~lViDEad~ml~~g--f~~~i~---~i~~~l~~~q~l~~SATl~~~v~~l-~~~~-~~~~~~i~~~~~~~~~ 337 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERG--FRDQVM---QIFQALSQPQVLLFSATVSPEVEKF-ASSL-AKDIILISIGNPNRPN 337 (518)
T ss_pred CccchheeEEEeecHHHHhhcc--hHHHHH---HHHHhCCCCcEEEEEeeCCHHHHHH-HHHh-CCCCEEEEeCCCCCCC
Confidence 2345668999999999999988 776554 4556678899999999999887553 3332 345544432 222222
Q ss_pred --ceEEEEeeCchhhHHHHHHHHHHhcC--CccEEEEeCccccHHHHHHHHHh-CCCceEEEcCCCCHHHHHHHHHHHhc
Q 009843 232 --LFYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWIS 306 (524)
Q Consensus 232 --l~~~v~~~~~~~~~~~~l~~~l~~~~--~~~~IIf~~s~~~~e~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (524)
+...+..... ..+...+.++++... ..++||||+++..++.+++.|.. .|+.+..+||+++.++|..+++.|++
T Consensus 338 ~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 338 KAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred cceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 2222222221 345556777776432 35799999999999999999975 59999999999999999999999999
Q ss_pred CCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC
Q 009843 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 307 g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~ 379 (524)
|+++|||||+++++|||+|+|++||||++|.+.++|+||+||+||.|..|.+++|++.+|...+..+.+....
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777766655443
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.4e-50 Score=420.24 Aligned_cols=341 Identities=23% Similarity=0.332 Sum_probs=275.6
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC----------CCeEEEeC
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lvl~ 85 (524)
.|+++++.+.+.+.|++ .||..|+++|.++|+++++|+|+++.||||+|||++|++|++.. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 36778999999999999 89999999999999999999999999999999999999999852 36899999
Q ss_pred cHHHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCcc
Q 009843 86 PLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (524)
Q Consensus 86 P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~ 160 (524)
|+++|+.|+.+.+.. .++....+.++.......... .+ ..+|+++||+.+.. .+. .......++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~--~~~IlV~Tp~rl~~-----~~~~~~~~~~~v~ 149 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SE--NQDIVVATPGRLLQ-----YIKEENFDCRAVE 149 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cC--CCCEEEEChHHHHH-----HHHcCCcCcccCC
Confidence 999999998887765 367777777776655443222 22 25677777765422 111 222345689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---CCCCcceEEE
Q 009843 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEV 236 (524)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l~~~v 236 (524)
+|||||||++.+|| |...+..+ ....+ ..++++||||++.....++...+. .++..+... ..+.++...+
T Consensus 150 ~lViDEah~~l~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~~ 223 (434)
T PRK11192 150 TLILDEADRMLDMG--FAQDIETI---AAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQWY 223 (434)
T ss_pred EEEEECHHHHhCCC--cHHHHHHH---HHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEEE
Confidence 99999999999988 66555544 33444 567999999998776666666553 445544332 2334454444
Q ss_pred EeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
...+....+...|..+++.....++||||+++..++.+++.|...|+.+..+||+|+..+|..+++.|++|+++|||||+
T Consensus 224 ~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd 303 (434)
T PRK11192 224 YRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303 (434)
T ss_pred EEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 44444466788888888876778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHH
Q 009843 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~ 374 (524)
++++|||+|++++||||++|.|.+.|+||+||+||+|..|.+++++...|...+..+.
T Consensus 304 ~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 304 VAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred ccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876665543
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-49 Score=423.19 Aligned_cols=348 Identities=18% Similarity=0.238 Sum_probs=273.0
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-------------CCe
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGI 80 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-------------~~~ 80 (524)
...|.++++++.+.+.|.+ +||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++.. ..+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3457778999999999998 89999999999999999999999999999999999999998753 358
Q ss_pred EEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhc
Q 009843 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHS 155 (524)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~ 155 (524)
+|||+||++|+.|+.+.++.+ ++....+.++....... ..+... ..+++++||+++.. .+. ....
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~Ll~-----~~~~~~~~ 234 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRLLD-----FNQRGEVH 234 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHHHH-----HHHcCCcc
Confidence 999999999999999988774 56666666554433322 223222 26788888876621 111 1233
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---CCCCcc
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNL 232 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l 232 (524)
...+++|||||||++.++| |.+.+..+........+.+++++|||.+..+......++ .++..+... ...+++
T Consensus 235 l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 310 (475)
T PRK01297 235 LDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIEPENVASDTV 310 (475)
T ss_pred cccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc--cCCEEEEeccCcCCCCcc
Confidence 5668999999999999887 665554443322222256899999999887766444433 344443321 122333
Q ss_pred eEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009843 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (524)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~Vl 312 (524)
...+.... ..++...+..++......++||||++++.++.+++.|...|+.+..+||+++.++|..+++.|++|+++||
T Consensus 311 ~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 311 EQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred cEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 33332222 24567777888887777789999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhc
Q 009843 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
|||+++++|||+|++++||++++|.|..+|+||+||+||.|..|.+++|++.+|...+..+.+..
T Consensus 390 vaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~ 454 (475)
T PRK01297 390 VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELL 454 (475)
T ss_pred EEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988877777665543
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.6e-49 Score=427.92 Aligned_cols=344 Identities=21% Similarity=0.302 Sum_probs=275.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
..|.++++++.+.++|.+ .||.+|+|+|.++|+.+++|+|++++||||+|||++|++|++.. .+++||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 347778999999999998 79999999999999999999999999999999999999998753 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009843 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (524)
+|+.|+.+.++.+ ++.+..+.+........ ..+.. ..+|+++||+.+.. .+. .......+++|
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~---~~l~~---~~~IVVgTPgrl~d-----~l~r~~l~l~~l~~l 153 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL---RALRQ---GPQIVVGTPGRLLD-----HLKRGTLDLSKLSGL 153 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHH---HHhcC---CCCEEEECHHHHHH-----HHHcCCcchhhceEE
Confidence 9999998887764 56666666665443322 12222 25677777765421 221 22335668999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCCcceEEEEe
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRY 238 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~v~~ 238 (524)
|+||||++++|| |. ..+..+...+| ..++++||||+++.+....... +.+|..+.. ....+++...+..
T Consensus 154 VlDEAd~ml~~g--f~---~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~--l~~~~~i~i~~~~~~~~~i~q~~~~ 226 (629)
T PRK11634 154 VLDEADEMLRMG--FI---EDVETIMAQIPEGHQTALFSATMPEAIRRITRRF--MKEPQEVRIQSSVTTRPDISQSYWT 226 (629)
T ss_pred EeccHHHHhhcc--cH---HHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHH--cCCCeEEEccCccccCCceEEEEEE
Confidence 999999999988 54 44556666776 6779999999998876543333 344443322 2234454433332
Q ss_pred eCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009843 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (524)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~ 318 (524)
.. ...+...|..++......++||||+|+..++.+++.|.+.|+.+..+||+|++.+|..++++|++|+++|||||+++
T Consensus 227 v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ 305 (629)
T PRK11634 227 VW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 (629)
T ss_pred ec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 22 23567778888887777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
++|||+|+|++||||++|.+.++|+||+||+||.|+.|.+++|+.+.|...++.+.+...
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999888888776544
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-49 Score=419.29 Aligned_cols=343 Identities=23% Similarity=0.332 Sum_probs=281.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCC-------Ce-EEEeCc
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-------GI-VLVVSP 86 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~-------~~-~lvl~P 86 (524)
..|.++++.+.+...|.+ .||..|+|+|..+|+.++.|+|++++|+||+|||++|.+|++.+- .. +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 567889999999999999 899999999999999999999999999999999999999998641 12 899999
Q ss_pred HHHHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh--hccCCc
Q 009843 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLL 159 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~--~~~~~l 159 (524)
||+|+.|..+.+..+ ++.+..+.++.+..... ..+..+ .+++ |+||+.+.++... .....+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~---~~iv------VaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG---VDIV------VATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC---CCEE------EECccHHHHHHHcCCcchhhc
Confidence 999999999988774 45566666666655443 333333 4554 5555554455332 356679
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---C--CCCcce
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---F--NRPNLF 233 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~--~~~~l~ 233 (524)
.++|+||||.+.++| |.++. ..+....| +.+++++|||++..+..-....+ .+|..+... . ..+++.
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i---~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l--~~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDI---EKILKALPPDRQTLLFSATMPDDIRELARRYL--NDPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHH---HHHHHhCCcccEEEEEecCCCHHHHHHHHHHc--cCCcEEEEccccccccccCce
Confidence 999999999999987 77555 44555565 68999999999997655444444 366544433 1 345566
Q ss_pred EEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
..+........++..|..+++.....++||||+|+..++.++..|...|+.+..+||+|++++|.++++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 65555554346899999999987777899999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc-cHHHHHHHHHhc
Q 009843 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (524)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d~~~~~~l~~~~ 377 (524)
||+++++|||+|+|++|||||+|.+.+.|+||+||+||.|..|.++.|+.+. |...+..+.+..
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~ 393 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRL 393 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 777777776654
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.6e-48 Score=406.90 Aligned_cols=344 Identities=20% Similarity=0.293 Sum_probs=267.6
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
..|+++++++.+.+.|.. +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. ..++||++|++
T Consensus 28 ~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 567778999999999988 89999999999999999999999999999999999999998753 56899999999
Q ss_pred HHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH-HhhhccCCccEEE
Q 009843 89 ALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVA 163 (524)
Q Consensus 89 ~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l-~~~~~~~~l~~iV 163 (524)
+|+.|+.+.+..++ +.+....+...... ....+.. ..+++++||+.+.. .+ ........++++|
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~Ivv~Tp~~l~~-----~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKA---GVHMVVGTPGRVYD-----MIDKRHLRVDDLKLFI 175 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcC---CCCEEEECcHHHHH-----HHHhCCcccccccEEE
Confidence 99999988887753 33333333333222 1222222 25677777765421 11 1223356689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCCcceEEEEee
Q 009843 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 239 (524)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~v~~~ 239 (524)
|||||++.+++ |+.. +..+.... ++.+++++|||+++.........+ .++..+.. .....++...+...
T Consensus 176 iDEah~~~~~~--~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (401)
T PTZ00424 176 LDEADEMLSRG--FKGQ---IYDVFKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIRQFYVAV 248 (401)
T ss_pred EecHHHHHhcc--hHHH---HHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCceEEEEec
Confidence 99999999877 5533 33334444 578899999999987665444433 33433221 22223333333333
Q ss_pred CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009843 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (524)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~ 319 (524)
.....+...+..+++.....++||||+|++.++.+++.|.+.++.+..+||+|+.++|..++++|++|+++|||||++++
T Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~ 328 (401)
T PTZ00424 249 EKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLA 328 (401)
T ss_pred ChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 33344666677777766667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhc
Q 009843 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
+|||+|++++||++++|.|...|+||+||+||.|+.|.|+++++++|...+..+.+..
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~ 386 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHY 386 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988777765543
No 22
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-48 Score=361.79 Aligned_cols=349 Identities=19% Similarity=0.313 Sum_probs=283.3
Q ss_pred ccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEE
Q 009843 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (524)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~l 82 (524)
+.......|.++++.+++++.+.. +||..|...|+.||+.+++|+|+++++..|+|||.+|.+..+.. .-.++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 345666778899999999999999 79999999999999999999999999999999998887655543 46799
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhh--cc
Q 009843 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SR 156 (524)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~--~~ 156 (524)
|++|||+|+.|..+.+..+ ++.+....++....+.-+. + -++.+.+.+||+...++.+.. ..
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---l---------d~G~hvVsGtPGrv~dmikr~~L~t 167 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---L---------DYGQHVVSGTPGRVLDMIKRRSLRT 167 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh---h---------cccceEeeCCCchHHHHHHhccccc
Confidence 9999999999988887775 4555554444443332111 1 133333666777666664433 34
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---CCCCcc
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNL 232 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l 232 (524)
..++++|+|||+.+++.| |. .++-.+.+.+| +.|++++|||.+.++.+...+. +.+|+.+-.. .....+
T Consensus 168 r~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kf--mtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKF--MTDPVRILVKRDELTLEGI 240 (400)
T ss_pred cceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh--cCCceeEEEecCCCchhhh
Confidence 459999999999999877 44 56666777777 8999999999999988855444 4666644332 222334
Q ss_pred eEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009843 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (524)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~Vl 312 (524)
...+...+..+++.+.|+++.....-.+++|||||+..++.|.+.+++.++.+..+||+|++++|..+..+|++|+.+||
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 44444455557888888888877666789999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhc
Q 009843 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
++|++.++|||+|.|++||+||+|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.+.+.-
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888776653
No 23
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.7e-48 Score=385.68 Aligned_cols=340 Identities=22% Similarity=0.309 Sum_probs=278.3
Q ss_pred ccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc--------------
Q 009843 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------- 76 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~-------------- 76 (524)
+.+...|+..+++.+++..+++ .||..|+|+|+.+|+-.++.+|+|.+|.||||||++|++|.+.
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 4566788888999999998888 7999999999999999999999999999999999999988763
Q ss_pred -CCCeEEEeCcHHHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH-
Q 009843 77 -KPGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL- 150 (524)
Q Consensus 77 -~~~~~lvl~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l- 150 (524)
.++.++++.||++|++|+.++-.+ +|+.+..+.++.+..++. +++--++..+++||+.+.+-
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~------------fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG------------FQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh------------hhhhccceeeecCchHHHHHH
Confidence 277899999999999998888666 466777777776655532 33333444466777654433
Q ss_pred -HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH-------------------HhCC--C--CCEEEEeccCChh
Q 009843 151 -KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-------------------NYLP--D--VPILALTATAAPK 206 (524)
Q Consensus 151 -~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~-------------------~~~~--~--~~ii~lSAT~~~~ 206 (524)
.....++...++|+|||+.+.++| |.|+|..+..-. ..+. + .+.+.||||++|.
T Consensus 388 enr~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ 465 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPA 465 (673)
T ss_pred HHHHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChH
Confidence 233445668899999999999998 888887653211 1111 1 5789999999999
Q ss_pred HHHHHHHHhCCCCCeEEeccCC---CCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCC
Q 009843 207 VQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 283 (524)
Q Consensus 207 ~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 283 (524)
+..-... ++..|+++...+. .+-+...+..... +.+...|.++|++....++|||+|+++.|+.||+.|.+.|+
T Consensus 466 verlar~--ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~ 542 (673)
T KOG0333|consen 466 VERLARS--YLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY 542 (673)
T ss_pred HHHHHHH--HhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc
Confidence 8773333 4577877654332 2334444444332 46688999999998888999999999999999999999999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEec
Q 009843 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (524)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~ 363 (524)
.+..|||+-++++|+.+++.|++|..+|+|||+++|+|||+|||.+||+||+++|++.|.||+||+||+|+.|.++.|++
T Consensus 543 ~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt 622 (673)
T KOG0333|consen 543 KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLT 622 (673)
T ss_pred eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHH
Q 009843 364 MDDRR 368 (524)
Q Consensus 364 ~~d~~ 368 (524)
+.|-.
T Consensus 623 ~~dt~ 627 (673)
T KOG0333|consen 623 PADTA 627 (673)
T ss_pred cchhH
Confidence 99854
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.3e-47 Score=416.46 Aligned_cols=339 Identities=20% Similarity=0.213 Sum_probs=251.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHH
Q 009843 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQ 94 (524)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~ 94 (524)
..+++.+.+.|++ .|+.+|+++|.++|+.+++|+|+++.+|||||||+||++|++.. +.++|||+||++|++||
T Consensus 19 ~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 19 AWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQ 97 (742)
T ss_pred CcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHH
Confidence 3567899999988 79999999999999999999999999999999999999999853 46899999999999999
Q ss_pred HHHHHHc---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 95 VIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 95 ~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
...++++ ++.+..+.+......+.. +.. ..+++++||+++...-.............+++|||||||.+.
T Consensus 98 ~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 98 LRAVRELTLRGVRPATYDGDTPTEERRW----ARE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHhccCCeEEEEEeCCCCHHHHHH----Hhc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 9999986 456666666666544322 222 257888999876421110000001124569999999999986
Q ss_pred c-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC--CCcceEEEEee--------
Q 009843 172 S-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--RPNLFYEVRYK-------- 239 (524)
Q Consensus 172 ~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~--~~~l~~~v~~~-------- 239 (524)
+ +|..+...+++|..+....+ +.+++++|||.++... ....+.. .+..+..... +....+.+...
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIG-APVVAVTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcC-CCeEEECCCCCCcCceEEEEecCCccccccc
Confidence 5 23333334455555555554 5679999999988643 2333322 3333322111 11122111110
Q ss_pred -------CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--------CCceEEEcCCCCHHHHHHHHHHH
Q 009843 240 -------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDW 304 (524)
Q Consensus 240 -------~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f 304 (524)
.....+...+.++++. +.++||||+|++.|+.++..|++. +..+..|||++++++|..++++|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 0112344555566654 468999999999999999988763 56789999999999999999999
Q ss_pred hcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEec--cccHHHHH
Q 009843 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRME 371 (524)
Q Consensus 305 ~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~--~~d~~~~~ 371 (524)
++|++++||||+++++|||+|++++||++++|.+.++|+||+|||||.|+.|.++++.. +.|...+.
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999986 33444444
No 25
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=370.20 Aligned_cols=334 Identities=22% Similarity=0.331 Sum_probs=275.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---------CC--eEEEeCcHH
Q 009843 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PG--IVLVVSPLI 88 (524)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---------~~--~~lvl~P~~ 88 (524)
.++++++...+.. +||..++|.|..+|+.++.++|+.|.+|||||||++|++|++.. .+ -+|||+|||
T Consensus 11 ~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 3566999999998 89999999999999999999999999999999999999999753 23 689999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh----hccCCc
Q 009843 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~----~~~~~l 159 (524)
+|+.|+.+.+..+ .+.+..+.++....+.-. .+.... ..| +++|||.+.++... .+...+
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~---~fkee~--~nI------lVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIK---TFKEEG--PNI------LVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHH---HHHHhC--CcE------EEeCchhHHHHHhchhhhcccccc
Confidence 9999988887664 455788887766555433 333333 334 56666666666543 445579
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCC----C---c
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR----P---N 231 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~----~---~ 231 (524)
.++|+||||.+.++| |. ..+..+...+| ....=+||||.+.++.+ +...++.+|+.+...... | .
T Consensus 159 e~LVLDEADrLldmg--Fe---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMG--FE---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhccc--HH---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhc
Confidence 999999999999999 54 66677788888 45578899999999877 556678888766543222 2 2
Q ss_pred ceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 009843 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (524)
Q Consensus 232 l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (524)
+.|.+... ..++..+.++|.....+++|||++|...++.....|... +..+..+||.|.+..|..+++.|.+..-
T Consensus 232 ~~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 232 LEYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred ceeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 23333322 578999999999988899999999999999999988765 6789999999999999999999999888
Q ss_pred cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHH
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~ 375 (524)
.|++||+++++|||+|+|++||+||+|.++..|+||+||+||.|+.|.+++|..+.+...+.++--
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988877776643
No 26
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-46 Score=362.85 Aligned_cols=341 Identities=21% Similarity=0.336 Sum_probs=280.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------------CCeEEEeCcH
Q 009843 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPL 87 (524)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lvl~P~ 87 (524)
+.-.+++.+.+++ -||..|+|+|.+|++-+++|+|++.+|.||+|||++|++|.+.. +..+||++|+
T Consensus 225 Fq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 225 FQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 5667889999998 69999999999999999999999999999999999999998753 5689999999
Q ss_pred HHHHHHHHHHHHH---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH--HhhhccCCccEE
Q 009843 88 IALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLV 162 (524)
Q Consensus 88 ~~L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l--~~~~~~~~l~~i 162 (524)
++|+.|...+..+ .|.+...+.+.....+. .+++..+ +.+ +++||+.+.+| ....+...+.++
T Consensus 304 reLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---vei------iiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 304 RELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEI------IIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred HHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceE------EeeCCchHhhhhhcCeeeeeeeEEE
Confidence 9999998777665 36666666655554433 3444444 555 45556666655 345566678999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEe-ccCCCCc---ceEEEEe
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPN---LFYEVRY 238 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-~~~~~~~---l~~~v~~ 238 (524)
|+|||+.++++| |.|.++++ +....|+.++++.|||+++.|+. +..-++++|.++. .+.+... +...+ .
T Consensus 372 VlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~Vrr--La~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~ 444 (629)
T KOG0336|consen 372 VLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRR--LAQSYLKEPMIVYVGSLDLVAVKSVKQNI-I 444 (629)
T ss_pred Eecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHH--HHHHhhhCceEEEecccceeeeeeeeeeE-E
Confidence 999999999998 88988877 67788999999999999999988 4444567776543 3333221 11222 2
Q ss_pred eCchhhHHHHHHHHHHhc-CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
.....++++.+..+++.. ...++||||.++-.++.|...|.-.|+.+..+||+-++.+|+..+++|++|+++|||||+.
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 334467787777777764 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCC
Q 009843 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (524)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~ 380 (524)
+++|+|+|||.+|++||+|.+++.|+||+||+||.|+.|.++.|+..+|......+++-....
T Consensus 525 aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~a 587 (629)
T KOG0336|consen 525 ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERA 587 (629)
T ss_pred hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888777655443
No 27
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-46 Score=371.81 Aligned_cols=343 Identities=23% Similarity=0.350 Sum_probs=276.8
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---------CCeEEEe
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---------~~~~lvl 84 (524)
...|.++.++..+++.+.. +||..|+|+|...|+..+-|+|++.+|.||+|||.+|.+|+|.+ ..+|||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 4567889999999999998 89999999999999999999999999999999999999999875 4489999
Q ss_pred CcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH-HHHHhh--hccC
Q 009843 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKI--HSRG 157 (524)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~-~~l~~~--~~~~ 157 (524)
+|||+|+.|.....+.+ .|.++...++......... +++. .+| +++||+.+ ..|.+. .+..
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~---LRs~---PDI------VIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAV---LRSR---PDI------VIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHH---HhhC---CCE------EEecchhHHHHhccCCCcccc
Confidence 99999999977765552 5667777777766554433 3332 344 55566543 333332 2345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC---CCcce
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLF 233 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~ 233 (524)
.+.++|+||||.+++-| |+ .++..+.+.+| +.|.++||||++.++.. +..+.+..|+.+....+ .+.+.
T Consensus 327 siEVLvlDEADRMLeeg--Fa---demnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FA---DEMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HH---HHHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 58899999999999977 66 55666677777 78899999999999977 55667778875543322 23343
Q ss_pred EE---EEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009843 234 YE---VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (524)
Q Consensus 234 ~~---v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (524)
.+ ++... ..++-..+..++...-...+|||+.|++.|..+.-.|--.|+.+.-+||.+++.+|...+++|++++++
T Consensus 400 QEFiRIR~~r-e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPKR-EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheecccc-ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 32 22211 122333444555554456799999999999999999988899999999999999999999999999999
Q ss_pred EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhc
Q 009843 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 311 VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
|||||+++++|+|++.|..||||.+|.+.+.|+||+||+.|.|+.|.++.|...+|...++.++++.
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 28
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=351.51 Aligned_cols=355 Identities=19% Similarity=0.226 Sum_probs=269.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (524)
....|+.+++.+.+.+.|+. .|+..++|.|..+|+++++|+|++-.|.||||||.+|.+|++.+ +-.++|++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 45678889999999999999 89999999999999999999999999999999999999999986 457999999
Q ss_pred HHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEE
Q 009843 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~i 162 (524)
|++|+-|..+++..+ ++++..+.++...-.. ....+.+ ..+++.||+.++-+-.-+.=.......++.++
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~q----a~~L~~r--PHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQ----AAILSDR--PHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhh----hhhcccC--CCeEecCccccccccccCCccchhhhhceeeE
Confidence 999999999998875 4566666655433222 1122222 45667777655432100000011223458899
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCCCC-CEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC---CCcceEEEEe
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRY 238 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~-~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~v~~ 238 (524)
|+|||+.+.+-. |- ..|..+.+-.|.. +.++||||.+...............+..+....+ ...+...+..
T Consensus 158 VlDEADrvL~~~--f~---d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 158 VLDEADRVLAGC--FP---DILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred Eecchhhhhccc--hh---hHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheee
Confidence 999999998754 43 5566666777754 8999999998876442211111111222211111 1122222222
Q ss_pred eCchhhHHHHHHHHHHh---cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009843 239 KDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (524)
Q Consensus 239 ~~~~~~~~~~l~~~l~~---~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT 315 (524)
.+. ..+-..++..|+. .++..++||+++..+|+.|+..|+..++.+..+|+-|++++|...+.+|+++.++|||||
T Consensus 233 ~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 233 VSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred cch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 211 2233345555543 356789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCC
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~ 380 (524)
+++++|+|+|.|..||||++|.++..|+||+||+.|+|+.|.++.++...|.+.+..+.+.-+.+
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999998775544
No 29
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=365.95 Aligned_cols=345 Identities=20% Similarity=0.246 Sum_probs=272.8
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC----------CCeE
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIV 81 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~ 81 (524)
.....+....+.+...+++++ .||..+++.|...|+.++.|+|+++.|.||+|||++|++|+++. +-.+
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 345566778999999999999 79999999999999999999999999999999999999999853 3369
Q ss_pred EEeCcHHHHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhh-
Q 009843 82 LVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIH- 154 (524)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~- 154 (524)
+||+|||+|+.|...+++++ ++.+....++.....- ...+.. ...+++.||. .+.+.. +..
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e---~~kl~k---~~niliATPG------RLlDHlqNt~~ 225 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE---ADKLVK---GCNILIATPG------RLLDHLQNTSG 225 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH---HHHhhc---cccEEEeCCc------hHHhHhhcCCc
Confidence 99999999999999888773 4444444444332221 122222 2566555554 333221 111
Q ss_pred -ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCc-
Q 009843 155 -SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN- 231 (524)
Q Consensus 155 -~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~- 231 (524)
-...++++|+||||++++.| |+.++.++ ...+| ..+.++||||.+++|.+-....|.- +|..+...-....
T Consensus 226 f~~r~~k~lvlDEADrlLd~G--F~~di~~I---i~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~ 299 (543)
T KOG0342|consen 226 FLFRNLKCLVLDEADRLLDIG--FEEDVEQI---IKILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERE 299 (543)
T ss_pred chhhccceeEeecchhhhhcc--cHHHHHHH---HHhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcc
Confidence 12236789999999999988 88666555 44555 6789999999999998755555543 6666654322221
Q ss_pred ----ceEEEEeeCchhhHHHHHHHHHHhcCC-ccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc
Q 009843 232 ----LFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (524)
Q Consensus 232 ----l~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (524)
+...+...+. ...+..+..+|+++.+ .++||||+|...+..+++.|+...++|..+||++++..|..+...|.+
T Consensus 300 The~l~Qgyvv~~~-~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k 378 (543)
T KOG0342|consen 300 THERLEQGYVVAPS-DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK 378 (543)
T ss_pred hhhcccceEEeccc-cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh
Confidence 2222222222 3457888899988765 899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 307 g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
.+.-|||||++.++|+|+|+|++||.|++|.++++|+||+||+||.|..|.++++..|.+...++.+-+-
T Consensus 379 aesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 379 AESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred cccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999888887643
No 30
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-45 Score=365.11 Aligned_cols=342 Identities=22% Similarity=0.311 Sum_probs=280.7
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC----------CCeEE
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVL 82 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~l 82 (524)
....|.++++.....+.|+. -+|..++..|+.+|+..+.|+|++..|.|||||||+|++|.|.+ +--+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 34578899999999999999 79999999999999999999999999999999999999999864 44699
Q ss_pred EeCcHHHHHHHHHHHHHHcCC----ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhh--cc
Q 009843 83 VVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SR 156 (524)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~--~~ 156 (524)
||+|||+|+.|.++.|.+.|- .+..+.++....... ..+. ...|++|||..+ +..|.+.. +.
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~---eRi~----~mNILVCTPGRL-----LQHmde~~~f~t 213 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFEL---ERIS----QMNILVCTPGRL-----LQHMDENPNFST 213 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHH---Hhhh----cCCeEEechHHH-----HHHhhhcCCCCC
Confidence 999999999999999998653 344444444332211 1111 266776666543 23333322 23
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccC-----CCC
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-----NRP 230 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~-----~~~ 230 (524)
..+.++|+|||+.+.++| |+ ..|..+...+| ..|.++||||.+..+.. +..|.+.+|..+.... ...
T Consensus 214 ~~lQmLvLDEADR~LDMG--Fk---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLDMG--FK---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred CcceEEEeccHHHHHHHh--HH---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChh
Confidence 458899999999999999 55 66777888888 67899999999999877 6667888888775431 223
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCC
Q 009843 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSR 308 (524)
Q Consensus 231 ~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (524)
++...+...+ ..+++..|..+++.+.+.++|||+.|.+++..+++.+... |++...+||+|++..|..+..+|....
T Consensus 287 ~L~Q~y~~v~-l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 287 NLQQSYVIVP-LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred hhhheEEEEe-hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 4433333222 2589999999999999999999999999999999999876 899999999999999999999999999
Q ss_pred CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHH
Q 009843 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 309 ~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~ 375 (524)
--||+||+++++|+|+|.|++||.+|.|.++++|+||+||+.|.+..|.|+++..|++.+.+-..++
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998554444333
No 31
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-46 Score=349.68 Aligned_cols=348 Identities=23% Similarity=0.303 Sum_probs=278.7
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~ 87 (524)
...|+++.+..+++..+.+ -||+.|.|.|+++|+.++.|+|+++.|..|+|||.+|.+|.+.+ .-.++|++|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred CccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 3567889999999999988 69999999999999999999999999999999999999999986 2368999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccE
Q 009843 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (524)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (524)
++|+-|.-...+. +|+.+....++.+.... + .++--..+.+++||++..+|.+ ....+...+
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrDD------I------~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRDD------I------MRLNQTVHLVVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCcccccc------e------eeecCceEEEEcCChhHHHHHhcccccchhceE
Confidence 9999986665554 56776666665543221 1 1111122336677777766643 444666789
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec--cCCCCcc--eEEE
Q 009843 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNL--FYEV 236 (524)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~--~~~~~~l--~~~v 236 (524)
+|+||||.+.+ .+|.+.... +...+| +.+++++|||.+-.|...+.+.+ .+|..+.- ......+ +|.+
T Consensus 231 lV~DEADKlLs--~~F~~~~e~---li~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 231 LVMDEADKLLS--VDFQPIVEK---LISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred EEechhhhhhc--hhhhhHHHH---HHHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhheee
Confidence 99999999987 457766544 555677 67899999999999888766654 55555432 2222222 3444
Q ss_pred EeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
... ..++.-|..++....-...||||||.+.+|-+|+.+.+.|+++.++|++|-++.|..++.+|++|.++.||||+
T Consensus 304 V~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 304 VEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred ech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 332 35666666666665556789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcc
Q 009843 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 384 (524)
.|.+|||+++|++||+||+|++.|+|+||+||+||.|..|.++.+++.+|...+..++.+...+....
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPI 448 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999988877655443
No 32
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-44 Score=356.74 Aligned_cols=350 Identities=21% Similarity=0.291 Sum_probs=270.6
Q ss_pred cccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------------
Q 009843 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------ 77 (524)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------------ 77 (524)
.+.-+..|..+++++.+...|....+++.|+..|.++|+.+++|+|++|.++||+|||++|++|++..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 45667889999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCce------eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAG------EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~ 151 (524)
+..+|||+|||+|+.|.++.+.++.-+. ..+.+.....++ ..++.| +.|+++||..+. ..|.
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK----ARLRKG---iNILIgTPGRLv-----DHLk 278 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK----ARLRKG---INILIGTPGRLV-----DHLK 278 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH----HHHhcC---ceEEEcCchHHH-----HHHh
Confidence 5679999999999999999998864332 333333333333 344544 677666665432 2332
Q ss_pred h--hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-------CC----CCEEEEeccCChhHHHHHHHHhCCC
Q 009843 152 K--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-------PD----VPILALTATAAPKVQKDVMESLCLQ 218 (524)
Q Consensus 152 ~--~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-------~~----~~ii~lSAT~~~~~~~~i~~~l~l~ 218 (524)
. ......+.++|+||||.+.+.| |..++.+|-.+.... ++ .+-+++|||++..|.. ...+.+.
T Consensus 279 nT~~i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLk 354 (708)
T KOG0348|consen 279 NTKSIKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLK 354 (708)
T ss_pred ccchheeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--Hhhcccc
Confidence 2 2334558999999999999998 777777665555332 22 3478999999999877 6677788
Q ss_pred CCeEEe-----ccCC-----------------------CCcceEEEEeeCchhhHHHHHHHHH----HhcCCccEEEEeC
Q 009843 219 NPLVLK-----SSFN-----------------------RPNLFYEVRYKDLLDDAYADLCSVL----KANGDTCAIVYCL 266 (524)
Q Consensus 219 ~~~~~~-----~~~~-----------------------~~~l~~~v~~~~~~~~~~~~l~~~l----~~~~~~~~IIf~~ 266 (524)
+|+.+. ...+ ..++...+...+. .-.+-.|..+| +.....++|||+.
T Consensus 355 Dpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp-KLRLV~Laa~L~~~~k~~~~qk~iVF~S 433 (708)
T KOG0348|consen 355 DPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP-KLRLVALAALLLNKVKFEEKQKMIVFFS 433 (708)
T ss_pred CceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCC-chhHHHHHHHHHHHhhhhhhceeEEEEe
Confidence 888776 1111 0112222222221 12333344444 4456678999999
Q ss_pred ccccHHHHHHHHHhC----------------------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccC
Q 009843 267 ERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (524)
Q Consensus 267 s~~~~e~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~ 324 (524)
+.+.++--+..|.+. +.++..+||+|++++|..+++.|....--||.||+++++|+|+
T Consensus 434 ~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDl 513 (708)
T KOG0348|consen 434 CSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDL 513 (708)
T ss_pred chhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCC
Confidence 999999888777641 2357889999999999999999999888899999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
|+|++||.||.|.+.++|+||+||+.|.|..|.+++|..|.+.+.+..+.+.
T Consensus 514 P~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 514 PHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred CCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999877766544
No 33
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=345.41 Aligned_cols=335 Identities=22% Similarity=0.298 Sum_probs=270.6
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------------CCe
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGI 80 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~ 80 (524)
....|+++++.+.+++++.+ .||+.|+-+|..||+-+++|+|+++.|.||||||++|++|.++. +..
T Consensus 17 ~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~s 95 (569)
T KOG0346|consen 17 KEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPS 95 (569)
T ss_pred hhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccce
Confidence 34678899999999999999 89999999999999999999999999999999999999999863 567
Q ss_pred EEEeCcHHHHHHHHHHHHHHc------CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-
Q 009843 81 VLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI- 153 (524)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~- 153 (524)
++|++||++|++|....+.++ .+.+.-+.+........ .+.... .+| +++||+.+..+...
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~--pdI------vV~TP~~ll~~~~~~ 163 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDL--PDI------VVATPAKLLRHLAAG 163 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccC--CCe------EEeChHHHHHHHhhc
Confidence 999999999999988877664 23333344333333322 222333 233 45566554444322
Q ss_pred --hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC--
Q 009843 154 --HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-- 228 (524)
Q Consensus 154 --~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-- 228 (524)
.....++++|+||||.+..+|.+ ..+..+...+| ..|.++||||.+.++.. .+.+.+.+|+++.....
T Consensus 164 ~~~~~~~l~~LVvDEADLllsfGYe-----edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el 236 (569)
T KOG0346|consen 164 VLEYLDSLSFLVVDEADLLLSFGYE-----EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGEL 236 (569)
T ss_pred cchhhhheeeEEechhhhhhhcccH-----HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccccC
Confidence 33455899999999999998844 56677777888 56799999999999887 78888999998764221
Q ss_pred --CCcceEEEEeeCchhhHHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHh
Q 009843 229 --RPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (524)
Q Consensus 229 --~~~l~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (524)
..++........ ..+++..++.+++- .-.++.|||+||.+.|..+.=.|.+.|++..+++|.|+...|..++++|.
T Consensus 237 ~~~dqL~Qy~v~cs-e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFN 315 (569)
T KOG0346|consen 237 PNPDQLTQYQVKCS-EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFN 315 (569)
T ss_pred CCcccceEEEEEec-cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhh
Confidence 123332222222 46788888888764 34567899999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcc-----------------------------------cccccccCCCccEEEEeCCCCCHHHHHHHHhhcC
Q 009843 306 SSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (524)
Q Consensus 306 ~g~~~VlVaT~-----------------------------------a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag 350 (524)
.|-+++||||+ -.++|||+.+|..|++||+|.+..+|+||+||++
T Consensus 316 kG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTa 395 (569)
T KOG0346|consen 316 KGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTA 395 (569)
T ss_pred CcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccc
Confidence 99999999999 2358999999999999999999999999999999
Q ss_pred CCCCCceEEEEeccccHH
Q 009843 351 RDQLPSKSLLYYGMDDRR 368 (524)
Q Consensus 351 R~G~~~~~i~~~~~~d~~ 368 (524)
|.|++|.++.|+.|.+..
T Consensus 396 Rg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 396 RGNNKGTALSFVSPKEEF 413 (569)
T ss_pred cCCCCCceEEEecchHHh
Confidence 999999999999999876
No 34
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-44 Score=358.95 Aligned_cols=344 Identities=21% Similarity=0.314 Sum_probs=268.6
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC----------------CC
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~----------------~~ 79 (524)
.+....+.+.+...+++ -|+..|+|+|+-+|+.+..|+|++++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 44456778888888887 69999999999999999999999999999999999999999852 37
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh--
Q 009843 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-- 153 (524)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-- 153 (524)
.++|++||++|+.|..++.+++ ++............ .+.......++|++ +||+.+..+.+.
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~------~q~~~~~~gcdIlv------aTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLG------AQLRFIKRGCDILV------ATPGRLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchh------hhhhhhccCccEEE------ecCchhhhhhhcce
Confidence 8999999999999999999885 33333333332211 11122222366654 455555555432
Q ss_pred hccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC--CCCEEEEeccCChhHHHHHHHHhCCCCCe---EEeccC
Q 009843 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSF 227 (524)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~--~~~ii~lSAT~~~~~~~~i~~~l~l~~~~---~~~~~~ 227 (524)
..+..++++|+|||+.+.+ +| |.|+++.+..-..+.| +.+.++||||.+..........+. .+-. +-+...
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~-~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLK-DNYIFLAVGRVGS 298 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhh-ccceEEEEeeecc
Confidence 2344578999999999998 77 8888777655443332 678999999999988774443332 2222 223456
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHhcC----Cc-----cEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHH
Q 009843 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (524)
Q Consensus 228 ~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~----~~-----~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (524)
...|+...+..... .++...|.++|.... .. .++|||.|++.|.+++..|...++++..+||..++.+|.
T Consensus 299 ~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 TSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred ccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 77888777776654 356667777776432 22 799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 299 ~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
+.++.|++|.++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.++.|++..+....+.+.+-
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~ 455 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEI 455 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997766555554443
No 35
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-43 Score=348.60 Aligned_cols=335 Identities=22% Similarity=0.332 Sum_probs=264.8
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcC--------------
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-------------- 77 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~-------------- 77 (524)
..+.|..+.++.+++.+|.. .||+.|+++|...++++..| .|++..|.|||||||+|-+|++.+
T Consensus 179 DvsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567778999999999999 89999999999999999999 799999999999999999999872
Q ss_pred -----CCeEEEeCcHHHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHH
Q 009843 78 -----PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (524)
Q Consensus 78 -----~~~~lvl~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~ 148 (524)
....||++|||+|+.|..+.|.. -++.+..+.++........+.. ..|++ +|+|||++.
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~----~~p~I--------VVATPGRlw 325 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLN----QRPDI--------VVATPGRLW 325 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHh----cCCCE--------EEecchHHH
Confidence 23599999999999999988876 3788888888877665544433 23333 677777666
Q ss_pred HHHh-----hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC------CCCCEEEEeccCChh-----------
Q 009843 149 KLKK-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILALTATAAPK----------- 206 (524)
Q Consensus 149 ~l~~-----~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~------~~~~ii~lSAT~~~~----------- 206 (524)
.|.. +.+...+.++|+||||++.+-|| | ..|..+.+.+ +..|.+.||||.+-.
T Consensus 326 eli~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F----~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~ 400 (731)
T KOG0347|consen 326 ELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-F----EELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKK 400 (731)
T ss_pred HHHHhhhhhhhhhhhceEEEEccHHHHhhhcc-H----HHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhc
Confidence 6532 33345689999999999999998 4 4444444333 367899999997542
Q ss_pred ---------HHHHHHHHhCCC-CCeEEeccCCCCcceEEEEeeCchhhHHHHHHH----------------HHHhcCCcc
Q 009843 207 ---------VQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS----------------VLKANGDTC 260 (524)
Q Consensus 207 ---------~~~~i~~~l~l~-~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~----------------~l~~~~~~~ 260 (524)
....++..+++. .|.++..+... .....|.+ +|..+ +++
T Consensus 401 ~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~--------------~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGr 465 (731)
T KOG0347|consen 401 KDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQS--------------ATASTLTESLIECPPLEKDLYLYYFLTRY-PGR 465 (731)
T ss_pred cchhhhhhHHHHHHHHHhCccCCCeeEecCcch--------------hHHHHHHHHhhcCCccccceeEEEEEeec-CCc
Confidence 222333444443 23444322111 11111111 12223 457
Q ss_pred EEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHH
Q 009843 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (524)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~ 340 (524)
+|||||+++.+..|+-.|...++....+|+.|.+++|...+++|++...-|||||+++++|+|+|+|.+||||.+|.+.+
T Consensus 466 TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCC
Q 009843 341 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (524)
Q Consensus 341 ~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~ 380 (524)
.|+||+||+.|++..|..+++.+|.+...+..+.+.....
T Consensus 546 iYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred eeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 9999999999999999999999999998888777765543
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-42 Score=327.84 Aligned_cols=350 Identities=20% Similarity=0.262 Sum_probs=280.0
Q ss_pred ccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcC------CCe
Q 009843 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGI 80 (524)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~ 80 (524)
..+++.+.|+++.+.+++++.+.. .||..|+.+|+.|++-++.. ++++.++..|+|||.||.|.+|.+ .+.
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ 162 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQ 162 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCC
Confidence 357888999999999999999998 79999999999999999875 789999999999999999999876 567
Q ss_pred EEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCC-CcccEEEeCcccccChhhHHHH---Hhhhcc
Q 009843 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK-PSLRLLYVTPELTATPGFMSKL---KKIHSR 156 (524)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ll~~tpe~v~t~~~~~~l---~~~~~~ 156 (524)
.+.|+|+++|+.|..+.+.++|-....-.+....+.. ...|. -...|+ ++||+-+.+| .+....
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk------~~rG~~i~eqIv------iGTPGtv~Dlm~klk~id~ 230 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK------AKRGNKLTEQIV------IGTPGTVLDLMLKLKCIDL 230 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc------cccCCcchhhee------eCCCccHHHHHHHHHhhCh
Confidence 8999999999999999999987554222211111110 01111 112344 4455533333 234556
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcce
Q 009843 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLF 233 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l~ 233 (524)
..+..+|+|||+.+.+ .| |+ ..-..+....| +.+++++|||....+.......+.-.++..++. .....+++
T Consensus 231 ~kikvfVlDEAD~Mi~tqG--~~---D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~Ik 305 (477)
T KOG0332|consen 231 EKIKVFVLDEADVMIDTQG--FQ---DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIK 305 (477)
T ss_pred hhceEEEecchhhhhhccc--cc---ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchh
Confidence 6789999999999976 34 33 22334555667 889999999999999887777776666666654 45666776
Q ss_pred EEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
.........++++..|.++.....-++.||||.|++.+..++..|.+.|..|..+||+|..++|..+.+.|+.|..+|||
T Consensus 306 Qlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLi 385 (477)
T KOG0332|consen 306 QLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLI 385 (477)
T ss_pred hheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEE
Confidence 66666667788999999877666666899999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccCCCccEEEEeCCCC------CHHHHHHHHhhcCCCCCCceEEEEecccc-HHHHHHHHHh
Q 009843 314 ATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSK 376 (524)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Q~~GRagR~G~~~~~i~~~~~~d-~~~~~~l~~~ 376 (524)
+|+++++|||++.|+.||+||+|- +.+.|+||+||+||.|+.|.++-++...+ ...+..+.+.
T Consensus 386 tTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 386 TTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred EechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHH
Confidence 999999999999999999999995 79999999999999999999999887664 4455555443
No 37
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.3e-40 Score=370.31 Aligned_cols=321 Identities=21% Similarity=0.202 Sum_probs=251.6
Q ss_pred CCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHH
Q 009843 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (524)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~ 89 (524)
.++....+...+.+.|||. +++.|.+||+.++++ +|.+++||||+|||.+|++|++ ..+.+++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3455667777777779995 999999999999875 7999999999999999998876 45789999999999
Q ss_pred HHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEe
Q 009843 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (524)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViD 165 (524)
|+.|+++.+++ +++.+..+++..+..+.......+..+. .+++++||.++. +......++++|||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll~---------~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLLQ---------KDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHhh---------CCCCcccCCEEEee
Confidence 99999998887 3677778888777777777777777765 678888875432 22234568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcceEEEEeeCchhh
Q 009843 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDD 244 (524)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l~~~v~~~~~~~~ 244 (524)
|+|++ |... ...+....+++++++||||+.+..... ...++.++.++.. +..+.++...+.... ...
T Consensus 581 Eahrf---gv~~------~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R~~V~t~v~~~~-~~~ 648 (926)
T TIGR00580 581 EEQRF---GVKQ------KEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDRLPVRTFVMEYD-PEL 648 (926)
T ss_pred ccccc---chhH------HHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCccceEEEEEecC-HHH
Confidence 99994 4322 233444456889999999999877653 3345556655543 334444543333222 111
Q ss_pred HHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccc
Q 009843 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (524)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~Gi 322 (524)
....+...+. .+++++|||++++.++.+++.|++. ++++..+||+|++++|..++++|.+|+++|||||+++++||
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 2233333333 3568999999999999999999985 78999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 323 D~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
|+|++++||+++.|. +..+|+|++||+||.|+.|.|++++...
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999875 7889999999999999999999999654
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-41 Score=373.05 Aligned_cols=329 Identities=22% Similarity=0.308 Sum_probs=243.1
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHH
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~ 91 (524)
.++++++++.+.+.+++ .|+.+|+|+|.++++. +++|+|+++.||||+|||++|.+|++. .++++||++|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 45677899999999998 7999999999999998 778999999999999999999998765 478999999999999
Q ss_pred HHHHHHHHHc---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEec
Q 009843 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDE 166 (524)
Q Consensus 92 ~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDE 166 (524)
.|+.+.++++ |+.+..+.+....... .+ ...+|+++|||.+ ..+.+ ......++++||||
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpek~------~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSEKV------DSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHHHH------HHHHhcChhhhhhcCEEEEEC
Confidence 9999999886 7777776655432110 01 1256777777754 22222 12234689999999
Q ss_pred cccccccCCCCHHHHHH-HHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCC------CeEEecc-CCCCcceEEEE-
Q 009843 167 AHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSS-FNRPNLFYEVR- 237 (524)
Q Consensus 167 aH~i~~~g~~fr~~~~~-l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~------~~~~~~~-~~~~~l~~~v~- 237 (524)
+|.+.+.+ +.+.+.. +..++...++.++++||||+++. .++..+++... |..+... .....+.+...
T Consensus 146 ~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 146 VHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred ccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccccc
Confidence 99998744 5555554 34555556789999999999753 45666665321 1100000 00000000000
Q ss_pred ---eeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCC--------------------------------
Q 009843 238 ---YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-------------------------------- 282 (524)
Q Consensus 238 ---~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g-------------------------------- 282 (524)
........+..+.+.++ .++++||||+|++.|+.++..|....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 299 (737)
T PRK02362 222 REVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLA 299 (737)
T ss_pred ccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHH
Confidence 00001223334444443 45689999999999999988886431
Q ss_pred ----CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE----eC-----CCCCHHHHHHHHhhc
Q 009843 283 ----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRA 349 (524)
Q Consensus 283 ----~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~----~~-----~p~s~~~y~Q~~GRa 349 (524)
..+.++||||++.+|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+|.||+|||
T Consensus 300 ~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 300 DCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred HHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 36889999999999999999999999999999999999999999999997 65 689999999999999
Q ss_pred CCCCCC--ceEEEEecccc
Q 009843 350 GRDQLP--SKSLLYYGMDD 366 (524)
Q Consensus 350 gR~G~~--~~~i~~~~~~d 366 (524)
||.|.. |.++++....+
T Consensus 380 GR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCCCceEEEEecCch
Confidence 999975 88999987653
No 39
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-41 Score=392.26 Aligned_cols=333 Identities=16% Similarity=0.206 Sum_probs=262.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHH
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
-+++.+.+++++|| +|++.|+++++.+++|+|++++||||+|||++++++++.. +.+++||+||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 45677788888999 6999999999999999999999999999999888776643 5689999999999999999998
Q ss_pred Hc------CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 009843 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (524)
Q Consensus 100 ~~------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (524)
.+ ++.+..+++..+...+......+..+. .+|+++||+.+... +. .... ..++++||||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~~--~~---~l~~-~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLARN--FP---EMKH-LKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHHh--HH---HHhh-CCCCEEEEECceecccc
Confidence 84 456677888888877777777777665 67999998855321 11 1222 56999999999999999
Q ss_pred CC---------CCHHHHHH----H-------------------HHHHHhCCCCC--EEEEeccCChhHHHHHHHHhCCCC
Q 009843 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (524)
Q Consensus 174 g~---------~fr~~~~~----l-------------------~~l~~~~~~~~--ii~lSAT~~~~~~~~i~~~l~l~~ 219 (524)
|| +|++++.. + ......+|+.+ ++.+|||.++. .++...+ .+
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 98 89999864 1 11122345444 46689998864 2233332 45
Q ss_pred CeEEeccCCCCcceEEE---EeeCchhhHHHHHHHHHHhcCCccEEEEeCcccc---HHHHHHHHHhCCCceEEEcCCCC
Q 009843 220 PLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 220 ~~~~~~~~~~~~l~~~v---~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~---~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
+..+..++.++++...+ ..... ..+ ..+.++++.. +..+||||+|++. |+++++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 56666666665543322 22221 222 5677777766 4679999999986 489999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcc----cccccccCCC-ccEEEEeCCCC---CHHHHHHHH-------------hhcCCC
Q 009843 294 DKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (524)
Q Consensus 294 ~~~R~~~~~~f~~g~~~VlVaT~----a~~~GiD~p~-v~~VI~~~~p~---s~~~y~Q~~-------------GRagR~ 352 (524)
|...+++|++|+++|||||+ +++||||+|+ ||+|||||+|+ |++.|+|.. ||+||+
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999995 7889999999 99999999999 999999988 999999
Q ss_pred CCCceEEEEeccccHHHHHHHHHh
Q 009843 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 353 G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
|.++.+++.+...+...++.+++.
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999988888888888877765
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.7e-41 Score=374.90 Aligned_cols=319 Identities=23% Similarity=0.300 Sum_probs=229.4
Q ss_pred hhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------------CCeEEEeCcHHH
Q 009843 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLIA 89 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------------~~~~lvl~P~~~ 89 (524)
+++.+.+.+++ +|..|+|+|.++++.+++|+|+++.||||+|||++|.+|++.. +..+|||+|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 55777777776 6778999999999999999999999999999999999998732 346999999999
Q ss_pred HHHHHHHHHHH---------------c-CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccccc----ChhhHHH
Q 009843 90 LMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSK 149 (524)
Q Consensus 90 L~~q~~~~l~~---------------~-gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~----t~~~~~~ 149 (524)
|++|+.+.+.. . ++.+...++......+..... . ..+|+++|||.+. ++.+.
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~--~p~IlVtTPE~L~~ll~~~~~~-- 167 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----K--PPHILITTPESLAILLNSPKFR-- 167 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----C--CCCEEEecHHHHHHHhcChhHH--
Confidence 99998876542 1 445666777666655433221 1 2578888888653 11111
Q ss_pred HHhhhccCCccEEEEecccccccc--CCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCC------CCC
Q 009843 150 LKKIHSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNP 220 (524)
Q Consensus 150 l~~~~~~~~l~~iViDEaH~i~~~--g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l------~~~ 220 (524)
.....+++|||||+|.+.+. |..+... +..+.... ++.+++++|||+++. +++..++.. ..+
T Consensus 168 ----~~l~~l~~VVIDE~H~l~~~~RG~~l~~~---L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~ 238 (876)
T PRK13767 168 ----EKLRTVKWVIVDEIHSLAENKRGVHLSLS---LERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRD 238 (876)
T ss_pred ----HHHhcCCEEEEechhhhccCccHHHHHHH---HHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCc
Confidence 12346899999999999753 3223323 33344444 467899999999763 344455543 122
Q ss_pred eE-EeccCCCCcceEEEEe-------e---CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC------CC
Q 009843 221 LV-LKSSFNRPNLFYEVRY-------K---DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GI 283 (524)
Q Consensus 221 ~~-~~~~~~~~~l~~~v~~-------~---~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~------g~ 283 (524)
.. +...+.+ .+...+.. . ......+..+.+.++. +.++||||+|++.|+.++..|++. +.
T Consensus 239 ~~iv~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~ 315 (876)
T PRK13767 239 CEIVDARFVK-PFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDED 315 (876)
T ss_pred eEEEccCCCc-cceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhcccc
Confidence 22 2222222 22111110 0 0011233344444443 468999999999999999999873 46
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCceEEEEe
Q 009843 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (524)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-G~~~~~i~~~ 362 (524)
.+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+++.|.|...|+||+||+||. |..+.+.++.
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999987 4445554444
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.2e-40 Score=360.74 Aligned_cols=316 Identities=21% Similarity=0.257 Sum_probs=244.7
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHH
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q 93 (524)
...+.+.+...++| +|++.|+++++.+..+ .+.+++||||||||++|++|++. .+.+++|++||++|+.|
T Consensus 247 ~~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 247 DGELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 35566666677999 5999999999999876 47999999999999999998864 47799999999999999
Q ss_pred HHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009843 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (524)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (524)
+.+.++++ |+.+..+++......+......+..+. .+++++||..+.. ......++++||||+|+
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~~---------~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQD---------DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhcc---------cchhcccceEEEechhh
Confidence 99988763 688999999999888888888888776 6777777765532 12245689999999998
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcceEEEEeeCchhhHHHH
Q 009843 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (524)
Q Consensus 170 i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l~~~v~~~~~~~~~~~~ 248 (524)
+ |...| ..+.....+.++++||||+.+..... ...+..+...+.. ...+..+...+.........++.
T Consensus 395 f---g~~qr------~~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 F---GVEQR------LALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYER 463 (681)
T ss_pred h---hHHHH------HHHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHH
Confidence 5 33233 22334444678999999998876542 2233333333332 23344455444443332333344
Q ss_pred HHHHHHhcCCccEEEEeCccc--------cHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009843 249 LCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (524)
Q Consensus 249 l~~~l~~~~~~~~IIf~~s~~--------~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~ 318 (524)
+.+.+ ..+.+++|||+.++ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+++|||||+++
T Consensus 464 i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 44444 24568999999654 456778888765 5789999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEec
Q 009843 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (524)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~~~~i~~~~ 363 (524)
++|||+|++++||+++.|. ....|+|++||+||.|..|.|++++.
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999997 68899999999999999999999995
No 42
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.9e-43 Score=334.31 Aligned_cols=333 Identities=21% Similarity=0.358 Sum_probs=257.1
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc--------------CC
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------KP 78 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~--------------~~ 78 (524)
+...|.++..+..+++.|++ -|+.+|+|+|.+.++.+++|+|.+..|-||||||++|.+|.+. .+
T Consensus 168 PIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred chhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 34456667888999999999 6999999999999999999999999999999999999999763 27
Q ss_pred CeEEEeCcHHHHHHHHHHHHHH-------cCCc---eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHH
Q 009843 79 GIVLVVSPLIALMENQVIGLKE-------KGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (524)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~l~~-------~gi~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~ 148 (524)
+..+||||+|+|+.|..+-+.. .|.+ +....++.+..+.- ..++.+ +.+ +++||+.+.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~G---vHi------vVATPGRL~ 314 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRG---VHI------VVATPGRLM 314 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcC---eeE------EEcCcchHH
Confidence 7899999999999987665443 3432 22333333333322 222222 444 666777666
Q ss_pred HHH--hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec
Q 009843 149 KLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (524)
Q Consensus 149 ~l~--~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~ 225 (524)
++. +...+.-..++++|||+.+.++| |..+++.+- ..|. ..|.++||||++...+.... -.+-.|+.+..
T Consensus 315 DmL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF---~~FK~QRQTLLFSATMP~KIQ~FAk--SALVKPvtvNV 387 (610)
T KOG0341|consen 315 DMLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIF---SFFKGQRQTLLFSATMPKKIQNFAK--SALVKPVTVNV 387 (610)
T ss_pred HHHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHH---HHHhhhhheeeeeccccHHHHHHHH--hhcccceEEec
Confidence 663 33334446789999999999999 666555543 3443 67899999999998766333 33456666543
Q ss_pred c---CCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHH
Q 009843 226 S---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302 (524)
Q Consensus 226 ~---~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 302 (524)
. ...-++..++.+.. .+.++-.|++-|++.. .+++|||..+.+++.+.++|--.|+.++.+|||-++++|...++
T Consensus 388 GRAGAAsldViQevEyVk-qEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 388 GRAGAASLDVIQEVEYVK-QEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred ccccccchhHHHHHHHHH-hhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 2 12222333333222 1456666777776644 57999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 303 ~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
.|+.|+-+|||||++++.|+|+|++.+|||||+|...++|+||+||+||.|+.|.+..|.+....
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 99999999999999999999999999999999999999999999999999999999999987643
No 43
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-40 Score=325.35 Aligned_cols=358 Identities=19% Similarity=0.275 Sum_probs=293.8
Q ss_pred ccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----------CC
Q 009843 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PG 79 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~ 79 (524)
.++...|+.++..+.+...+++ --|.+++|.|-++++..+.|+|++-+|-||||||.+|+.|++.. ++
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gP 297 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGP 297 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCC
Confidence 3445556677888889888887 69999999999999999999999999999999999999999753 67
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--h
Q 009843 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (524)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~ 153 (524)
..||++||++|+.|+..+.+++ |+......++.+..+.... +..+ ..+ +|+||+++..+.+ .
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---Lk~g---~Ei------vVaTPgRlid~VkmKa 365 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---LKEG---AEI------VVATPGRLIDMVKMKA 365 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---hhcC---CeE------EEechHHHHHHHHhhc
Confidence 8999999999999999998875 6777777777776554332 2222 334 5566666666643 3
Q ss_pred hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEe-ccC--CCC
Q 009843 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSF--NRP 230 (524)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-~~~--~~~ 230 (524)
.+..++.++|+|||+.+.+.| |.+..+.|.. ...|+.|.++||||....+.......| .+|+.+. .+. ...
T Consensus 366 tn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lard~L--~dpVrvVqg~vgean~ 439 (731)
T KOG0339|consen 366 TNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLARDIL--SDPVRVVQGEVGEANE 439 (731)
T ss_pred ccceeeeEEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHHHHh--cCCeeEEEeehhcccc
Confidence 445668999999999999988 7777766644 334699999999999998877666555 4454332 232 334
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 009843 231 NLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (524)
Q Consensus 231 ~l~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (524)
.|...|........++..|..-|-+ ...+++|||+..+..+++++..|+..|+++..+||++.+.+|.+++.+|+.+..
T Consensus 440 dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~ 519 (731)
T KOG0339|consen 440 DITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK 519 (731)
T ss_pred chhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC
Confidence 4666677777777888888776654 345689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhh
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 387 (524)
+|+|||++..+|+|+|+++.||+||+-.+++.|.||+||+||.|..|.++.|++..|......++.......+..+..
T Consensus 520 ~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~ 597 (731)
T KOG0339|consen 520 PVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDE 597 (731)
T ss_pred ceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChH
Confidence 999999999999999999999999999999999999999999999999999999999998888888776665554433
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.4e-39 Score=353.28 Aligned_cols=311 Identities=19% Similarity=0.243 Sum_probs=235.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHH
Q 009843 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQV 95 (524)
Q Consensus 25 ~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~ 95 (524)
.....+.+.++| +|++.|+++++.++.+ .+.++++|||+|||++|++|++. .+.+++|++||++|+.|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHH
Confidence 444444445899 7999999999999876 35899999999999999988764 4779999999999999999
Q ss_pred HHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 96 IGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 96 ~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
+.++++ |+++..+++......+......+..+. .+++++||..+.. ......++++||||+|++
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~~---------~~~~~~l~lvVIDEaH~f- 369 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQE---------KVEFKRLALVIIDEQHRF- 369 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHhc---------cccccccceEEEechhhc-
Confidence 988763 688999999988888887888887775 6777777765432 223456899999999985
Q ss_pred ccCCCCHHHHHHHHHHHHhCC---CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe-ccCCCCcceEEEEeeCchhhHHH
Q 009843 172 SWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLDDAYA 247 (524)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-~~~~~~~l~~~v~~~~~~~~~~~ 247 (524)
|...| ..+....+ +.++++||||+.+..... ...+..+...+. ....+..+...+...... .
T Consensus 370 --g~~qr------~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~----~ 435 (630)
T TIGR00643 370 --GVEQR------KKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEK----D 435 (630)
T ss_pred --cHHHH------HHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchH----H
Confidence 43333 22333443 677999999998865442 111211222222 122333444433332221 3
Q ss_pred HHHHHHHh--cCCccEEEEeCccc--------cHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009843 248 DLCSVLKA--NGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (524)
Q Consensus 248 ~l~~~l~~--~~~~~~IIf~~s~~--------~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT 315 (524)
.+.+.+.+ ..+.+++|||+..+ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||
T Consensus 436 ~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 515 (630)
T TIGR00643 436 IVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT 515 (630)
T ss_pred HHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 33333332 24567999998764 466777888764 7889999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEe
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~~~~i~~~ 362 (524)
+++++|||+|++++||+++.|. +...|+|++||+||.|+.|.|++++
T Consensus 516 ~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 516 TVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999999986 7899999999999999999999999
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=349.13 Aligned_cols=323 Identities=25% Similarity=0.313 Sum_probs=259.1
Q ss_pred ChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---C--------CeEEEeCcHHH
Q 009843 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---P--------GIVLVVSPLIA 89 (524)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~--------~~~lvl~P~~~ 89 (524)
.+++.+.+++++. |.+|||.|.+|++.+.+|+++++.||||+|||+++.+|++.. . -.+|||+|++|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4678899999985 889999999999999999999999999999999999998743 1 26999999999
Q ss_pred HHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccc----cChhhHHHHHhhhccCCccE
Q 009843 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNL 161 (524)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v----~t~~~~~~l~~~~~~~~l~~ 161 (524)
|.+|+...|+. +|++....++..+..++.... +...+|+++|||.+ ..+.+... +..+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~------~~PPdILiTTPEsL~lll~~~~~r~~------l~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML------KNPPHILITTPESLAILLNSPKFREL------LRDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc------CCCCcEEEeChhHHHHHhcCHHHHHH------hcCCcE
Confidence 99999988765 789998888888877765432 22378999999943 33333322 235889
Q ss_pred EEEeccccccc--cCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCC-CeEEeccCCCCcceEEEEe
Q 009843 162 VAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRY 238 (524)
Q Consensus 162 iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~-~~~~~~~~~~~~l~~~v~~ 238 (524)
+||||.|.+.. .|+.. +..|..+....++.+.|+||||..+. .++.++|.-.. +..+.......+..+.+..
T Consensus 153 VIVDEiHel~~sKRG~~L---sl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 153 VIVDEIHALAESKRGVQL---ALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred EEeehhhhhhccccchhh---hhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 99999999954 55442 24456666666688999999999865 45678887664 5444443333444443332
Q ss_pred eC--------chhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCC-CceEEEcCCCCHHHHHHHHHHHhcCCC
Q 009843 239 KD--------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRK 309 (524)
Q Consensus 239 ~~--------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (524)
.. .....+..+.++++++. ++|||+|||..+|.++..|++.+ ..+..+||.++.+.|..+.++|++|++
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 21 11346677778887765 79999999999999999999986 899999999999999999999999999
Q ss_pred cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCceEEEEecc
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYGM 364 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-G~~~~~i~~~~~ 364 (524)
+++|||+.++.|||+.+|+.|||++-|++...+.||+||+|+. |..+.++++-..
T Consensus 306 ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999954 667888777654
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=9e-39 Score=362.77 Aligned_cols=331 Identities=21% Similarity=0.222 Sum_probs=249.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHHH
Q 009843 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIAL 90 (524)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L 90 (524)
+.........+...|+| .+++.|.++|+.++.+ +|+++++|||+|||.+|+.+++ ..+.+++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 44455566666666999 6999999999999987 8999999999999999887764 457899999999999
Q ss_pred HHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEec
Q 009843 91 MENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (524)
Q Consensus 91 ~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDE 166 (524)
+.|+++.+++. ++.+..+++..+..++..+...+..+. .+++++||+++.. ......++++||||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~~---------~v~~~~L~lLVIDE 730 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQS---------DVKWKDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHhC---------CCCHhhCCEEEEec
Confidence 99999988763 466777888888777777777776665 6788888865421 12234589999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccC-CCCcceEEEEeeCchhhH
Q 009843 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKDLLDDA 245 (524)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~-~~~~l~~~v~~~~~~~~~ 245 (524)
+|++ |.. ....+....+++++++||||+.+.+..... .++.++.++.... .+..+...+...... ..
T Consensus 731 ahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l~~--~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~ 798 (1147)
T PRK10689 731 EHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYDSL-VV 798 (1147)
T ss_pred hhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHHHH--hhCCCcEEEecCCCCCCCceEEEEecCcH-HH
Confidence 9995 422 123344445689999999999998766333 3456676665433 233343322222211 11
Q ss_pred HHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccccc
Q 009843 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (524)
Q Consensus 246 ~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD 323 (524)
...+...+. .+++++|||++++.++.+++.|++. +.++..+||+|++++|..++++|++|+++|||||+++++|||
T Consensus 799 k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 222322222 3467999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCceEEEEeccc------cHHHHHHHHHh
Q 009843 324 RKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILSK 376 (524)
Q Consensus 324 ~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~G~~~~~i~~~~~~------d~~~~~~l~~~ 376 (524)
+|++++||..+.. .++..|+|++||+||.|+.|.|++++... ...+++.+.+.
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 9999999944332 24678999999999999999999998643 34566655544
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-38 Score=353.89 Aligned_cols=321 Identities=22% Similarity=0.287 Sum_probs=234.5
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~ 91 (524)
++++++++.+.+.+++ .|+.+|+|+|.++++. +++|+|+++.+|||+|||++|.+|++. .++++|||+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4567889999999999 7999999999999986 789999999999999999999999864 377999999999999
Q ss_pred HHHHHHHHH---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh--hccCCccEEEEec
Q 009843 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDE 166 (524)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~--~~~~~l~~iViDE 166 (524)
.|+.+.++. +|+.+..+++....... .. + ..+++++|||.+ ..+.+. .....+++|||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~~-~--~~~IiV~Tpe~~------~~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE------WL-G--KYDIIIATAEKF------DSLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh------hh-c--cCCEEEEcHHHH------HHHHhCCchhhhcCCEEEEcC
Confidence 999988875 47777777665443211 11 1 256777777754 222211 1235689999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCC-cceEEEE------e
Q 009843 167 AHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVR------Y 238 (524)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l~~~v~------~ 238 (524)
+|.+.+++++ +. +..+.... ++.++++||||+++. .++..+++... +... .+| .+...+. .
T Consensus 147 ~H~l~~~~rg--~~---le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~~~-~rpv~l~~~~~~~~~~~~ 215 (720)
T PRK00254 147 IHLIGSYDRG--AT---LEMILTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VVSD-WRPVKLRKGVFYQGFLFW 215 (720)
T ss_pred cCccCCccch--HH---HHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---ccCC-CCCCcceeeEecCCeeec
Confidence 9999886633 33 33344443 368899999999753 56667765421 1111 121 1111110 0
Q ss_pred eCc-----hhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--------------------------------
Q 009843 239 KDL-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-------------------------------- 281 (524)
Q Consensus 239 ~~~-----~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------------- 281 (524)
... .......+.+.++ .+.++||||+|++.|+.++..|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 216 EDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred cCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 000 0112233444444 3568999999999999888666421
Q ss_pred -CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE-------eCCCC-CHHHHHHHHhhcCCC
Q 009843 282 -GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRD 352 (524)
Q Consensus 282 -g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~-------~~~p~-s~~~y~Q~~GRagR~ 352 (524)
+.++.+|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|. +..+|.||+|||||.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 235899999999999999999999999999999999999999999999994 45443 678999999999997
Q ss_pred C--CCceEEEEecccc
Q 009843 353 Q--LPSKSLLYYGMDD 366 (524)
Q Consensus 353 G--~~~~~i~~~~~~d 366 (524)
| ..|.++++....+
T Consensus 374 ~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 374 KYDEVGEAIIVATTEE 389 (720)
T ss_pred CcCCCceEEEEecCcc
Confidence 6 5688999987665
No 48
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=348.59 Aligned_cols=348 Identities=21% Similarity=0.347 Sum_probs=277.6
Q ss_pred ccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----------CC
Q 009843 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PG 79 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~ 79 (524)
+++-..|...+++..++..+++ +||..++|+|.+||+++++|+|+|.+|-||+|||++|+||.+.. ++
T Consensus 361 pkpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGP 439 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGP 439 (997)
T ss_pred CcccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCc
Confidence 3445567777999999999976 99999999999999999999999999999999999999999843 77
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--h-
Q 009843 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--K- 152 (524)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~--~- 152 (524)
..||++||++|+.|+.+.++.+ ++.+....+....... ...++.+ ..|+++| |+.+-++. +
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg---~eIvV~t------pGRmiD~l~~n~ 507 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG---AEIVVCT------PGRMIDILCANS 507 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC---CceEEec------cchhhhhHhhcC
Confidence 9999999999999999887774 6665555544433332 2334444 4454444 44433332 1
Q ss_pred --hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cC
Q 009843 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SF 227 (524)
Q Consensus 153 --~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~ 227 (524)
+.++..+.++|+||||.+.+.| |.|....| +...-|..|.+++|||.+..+..--...++ .|+.+.. +.
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~sv 581 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSV 581 (997)
T ss_pred Cccccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEcccee
Confidence 2223335589999999999888 77776653 333456889999999999886554444444 5544332 23
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc
Q 009843 228 NRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (524)
Q Consensus 228 ~~~~l~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (524)
....+...+........++..|.++|.. ....++||||.+...|..+...|.+.|+.+..+||+.++.+|..++++|++
T Consensus 582 V~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~ 661 (997)
T KOG0334|consen 582 VCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN 661 (997)
T ss_pred EeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc
Confidence 3345566666666567888889888875 346789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhc
Q 009843 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 307 g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
|.+.+||||+.+++|+|++++-+||||++|...+.|+||.||+||.|+.|.|++|..+.+......|.+..
T Consensus 662 ~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 662 GVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997777666666554
No 49
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-39 Score=314.08 Aligned_cols=344 Identities=21% Similarity=0.340 Sum_probs=272.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (524)
..+.|.++++.+++++.+.. +||+.|+.+|+.||..+.+|.|+.+++++|+|||.+|.++++.. ...++++.|
T Consensus 24 vvdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 45678999999999999999 89999999999999999999999999999999999999999875 557999999
Q ss_pred HHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh--hccCCcc
Q 009843 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLN 160 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~--~~~~~l~ 160 (524)
+++|+.|........| ..+....+......... .+.... ..+ +++||++...+.+. .....++
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~---~i~~~~--~hi------vvGTpgrV~dml~~~~l~~~~iK 171 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ---ALLKDK--PHI------VVGTPGRVFDMLNRGSLSTDGIK 171 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh---hhhccC--cee------ecCCchhHHHhhcccccccccee
Confidence 9999999887776654 33333333332221111 111111 122 56677766655432 2344599
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCC---cceEEE
Q 009843 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP---NLFYEV 236 (524)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~---~l~~~v 236 (524)
++|+|||+.+...| |+ .++..+.+..| +++++++|||.++++.. ...-.+.+|..+....+.. .+....
T Consensus 172 mfvlDEaDEmLs~g--fk---dqI~~if~~lp~~vQv~l~SAT~p~~vl~--vt~~f~~~pv~i~vkk~~ltl~gikq~~ 244 (397)
T KOG0327|consen 172 MFVLDEADEMLSRG--FK---DQIYDIFQELPSDVQVVLLSATMPSDVLE--VTKKFMREPVRILVKKDELTLEGIKQFY 244 (397)
T ss_pred EEeecchHhhhccc--hH---HHHHHHHHHcCcchhheeecccCcHHHHH--HHHHhccCceEEEecchhhhhhheeeee
Confidence 99999999998866 77 44555566666 88999999999998876 3333456776554333222 222222
Q ss_pred EeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
..... +.|+..|.++.+ .-...+|||||+..+..+...|...|..+..+|+.|.+.+|..+.+.|+.|..+|||.|+
T Consensus 245 i~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd 321 (397)
T KOG0327|consen 245 INVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD 321 (397)
T ss_pred eeccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecc
Confidence 22222 237888888887 445789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
.+++|+|+.++..||+|++|...++|+||+||+||.|.+|.++.+....|...++.+.+.-.
T Consensus 322 l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~ 383 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN 383 (397)
T ss_pred ccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988888775543
No 50
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-39 Score=325.31 Aligned_cols=343 Identities=20% Similarity=0.262 Sum_probs=263.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----------CCeEEEeCcHH
Q 009843 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (524)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~lvl~P~~ 88 (524)
+..+..+++.+.. .||..|+|.|.+|++.++.++|+++++|||+|||++|.+|++.+ +-+++|++|++
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 4556777888887 79999999999999999999999999999999999999999864 34799999999
Q ss_pred HHHHHHHHHHHHcCCc------eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh----hccCC
Q 009843 89 ALMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGL 158 (524)
Q Consensus 89 ~L~~q~~~~l~~~gi~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~----~~~~~ 158 (524)
+|+.|...++.++.+. +...........+...... ..++++ +.||..+..+... .....
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~-----~k~dil------i~TP~ri~~~~~~~~~~idl~~ 288 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSD-----EKYDIL------ISTPMRIVGLLGLGKLNIDLSK 288 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHH-----HHHHHH------hcCHHHHHHHhcCCCccchhhe
Confidence 9999999999886533 1111111111111111000 124444 4455444444333 24556
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC---CCcceEE
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYE 235 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~ 235 (524)
+..+|+|||+.+.+. ..|+.....+-..+.. |++.+-+||||.+..+.+ +..+.+.++..+..+.. ...+...
T Consensus 289 V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred eeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhh
Confidence 889999999999875 2355444444333333 677888999999988866 33334444443332222 2234455
Q ss_pred EEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHH-HhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009843 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (524)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVa 314 (524)
.........++-.+.+++...-..+++||+.+.+.|.+|...| .-.++.+.++||..++.+|.+.+++|+.|++.||+|
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 5555555678888888888877889999999999999999999 566999999999999999999999999999999999
Q ss_pred cccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
|+.+++|||+.+|+.||+||+|.+..+|+||+||+||.|+.|.+++||+..|..+++.+..-..
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887765443
No 51
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.5e-39 Score=327.90 Aligned_cols=341 Identities=19% Similarity=0.256 Sum_probs=275.4
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (524)
....|+.+.+...++..|++ -||..|+++|..||+.++.+.|+||++..|+|||++|-+.++.. ....+||+|
T Consensus 23 ~~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 44567778889999999998 69999999999999999999999999999999999998777653 667999999
Q ss_pred HHHHHHHHHHHHHHcC-----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhccCCc
Q 009843 87 LIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~~~l 159 (524)
||+++.|+.+.+...+ ..+..+.++....... .++.. .+| +++|||++..|- ...+.+.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~---~rlk~----~rI------vIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDL---IRLKQ----TRI------VIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhh---hhhhh----ceE------EecCchHHHHHHHhcCCCccce
Confidence 9999999999888754 4555555554433221 11221 344 566666666664 45566779
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcce---EE
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF---YE 235 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~---~~ 235 (524)
+++|+||||.+.+-+. |+ ..+..+...+| ..|++++|||.+....+.+.+. |++|..++.+.+.+.+. ..
T Consensus 169 rlfVLDEADkL~~t~s-fq---~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTES-FQ---DDINIIINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQY 242 (980)
T ss_pred eEEEeccHHhhhchhh-HH---HHHHHHHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhhe
Confidence 9999999999988442 65 45677778888 6789999999999887766554 57787777666665542 22
Q ss_pred EEeeCc-------hhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC
Q 009843 236 VRYKDL-------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (524)
Q Consensus 236 v~~~~~-------~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (524)
+..+.. ...++..|-++++..+-..+||||+....|+.++.+|...|+.|.++.|.|++.+|..+.+.+++-.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 222211 2347777888888888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH-HHHHHH
Q 009843 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (524)
Q Consensus 309 ~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~-~~~~~l 373 (524)
++|||+|+..++|||-++|++||+.|.|.+.++|.||+|||||.|..|.+++|...... +.+..|
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999876643 443333
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-37 Score=341.42 Aligned_cols=335 Identities=21% Similarity=0.220 Sum_probs=233.4
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHH
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~ 92 (524)
+++++++++.+.+.+.. .|+. ++++|.++++.+.+|+++++.||||+|||+++.++++. .++++|+++|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 34567888999999987 6886 99999999999999999999999999999999888754 4789999999999999
Q ss_pred HHHHHHHH---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEecc
Q 009843 93 NQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEA 167 (524)
Q Consensus 93 q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDEa 167 (524)
|+.+.+++ .|+.+....+....... .+ ...+++++|||.+ ..+.. ......++++|||||
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~dIiv~Tpek~------~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD-----FI----KRYDVVILTSEKA------DSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh----ccCCEEEECHHHH------HHHHhCChhHHhhcCEEEEecc
Confidence 99998875 36666555544322110 01 1257777777743 22211 112346899999999
Q ss_pred ccccccCCCCHHHHHHHH-HHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEe-----eCc
Q 009843 168 HCISSWGHDFRPSYRKLS-SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KDL 241 (524)
Q Consensus 168 H~i~~~g~~fr~~~~~l~-~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~-----~~~ 241 (524)
|++.+.+ +.+.+..+. .++...++.++++||||+++. .++..+++... +...+....+...+.. .+.
T Consensus 145 H~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 145 HIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred hhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecc
Confidence 9998754 334444432 233334578999999999753 45666665321 2222221122211111 000
Q ss_pred hhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCC-------------------------CceEEEcCCCCH
Q 009843 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG-------------------------ISCAAYHAGLND 294 (524)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g-------------------------~~~~~~h~~l~~ 294 (524)
.......+..+++. ..++++||||++++.|+.+++.|.+.. .++.++||+|+.
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00001112233332 245689999999999999999886531 247889999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC---------CCCCHHHHHHHHhhcCCCCC--CceEEEEec
Q 009843 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN---------IPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (524)
Q Consensus 295 ~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~---------~p~s~~~y~Q~~GRagR~G~--~~~~i~~~~ 363 (524)
++|..+++.|++|.++|||||+++++|||+|+.++|| .+ .|.|..+|.||+|||||.|. .|.++++..
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 9999999999999999999999999999999865555 33 35689999999999999995 466777654
Q ss_pred cc-cHHHHHHHHH
Q 009843 364 MD-DRRRMEFILS 375 (524)
Q Consensus 364 ~~-d~~~~~~l~~ 375 (524)
.. +...++.++.
T Consensus 377 ~~~~~~~~~~~l~ 389 (674)
T PRK01172 377 SPASYDAAKKYLS 389 (674)
T ss_pred CcccHHHHHHHHc
Confidence 43 3555555553
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-38 Score=310.61 Aligned_cols=335 Identities=22% Similarity=0.311 Sum_probs=242.6
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHc---------CCCEEEEcCCCChHHHHHHHHHhcC-------CCeEEEeCcHHHHHHH
Q 009843 30 LRWHFGHAQFRDKQLDAIQAVLS---------GRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALMEN 93 (524)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~---------g~d~lv~apTGsGKTl~~~lp~l~~-------~~~~lvl~P~~~L~~q 93 (524)
+.+ .+++...|.|..+++.++. ++|+.|.||||||||+||.+|+++. .-++|||+|+++|+.|
T Consensus 152 l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 152 LVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 666 5899999999999999863 5899999999999999999999863 3479999999999999
Q ss_pred HHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCC--cccEEEeCcccccChhhHHHHH--hhhccCCccEEEEe
Q 009843 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKP--SLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAID 165 (524)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~ll~~tpe~v~t~~~~~~l~--~~~~~~~l~~iViD 165 (524)
.++.+.+. |+.+..+.+..+.... ...+....+ .++|++.||..+. ..|. +-..+..++++|||
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E---~~qL~~~~~~~~~DIlVaTPGRLV-----DHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDE---ARQLASDPPECRIDILVATPGRLV-----DHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHH---HHHHhcCCCccccceEEcCchHHH-----HhccCCCCcchhhceEEEec
Confidence 99999885 4554444444433322 223333322 3566555554321 2222 12234568899999
Q ss_pred ccccccccCCCCHHHHHH----------------------------HHHHHHh----CCCCCEEEEeccCChhHHHHHHH
Q 009843 166 EAHCISSWGHDFRPSYRK----------------------------LSSLRNY----LPDVPILALTATAAPKVQKDVME 213 (524)
Q Consensus 166 EaH~i~~~g~~fr~~~~~----------------------------l~~l~~~----~~~~~ii~lSAT~~~~~~~~i~~ 213 (524)
|||++.+.. |..-... +..+... .|....+.+|||++..-.+ ..
T Consensus 303 EADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K--l~ 378 (620)
T KOG0350|consen 303 EADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK--LK 378 (620)
T ss_pred hHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH--Hh
Confidence 999997622 1111111 1111111 1122267788887765444 55
Q ss_pred HhCCCCCeEEecc------CCCCc-c-eEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHH----hC
Q 009843 214 SLCLQNPLVLKSS------FNRPN-L-FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS----AG 281 (524)
Q Consensus 214 ~l~l~~~~~~~~~------~~~~~-l-~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~----~~ 281 (524)
.+.+..|..+... +..|. + ++.+.... .-+.-.+..+++.....++|+|+++...+.+++..|+ ..
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~--~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~ 456 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP--KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSD 456 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeeccc--ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccc
Confidence 5666666433221 11111 1 11111111 1334456677787788899999999999999999887 33
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
...+..|.|+++.+.|...+++|..|+++||||++++++|||+.+|..||+||+|.+...|+||+||++|+|+.|.|+.+
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tl 536 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITL 536 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEe
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHhccC
Q 009843 362 YGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 362 ~~~~d~~~~~~l~~~~~~ 379 (524)
....+...+..+++....
T Consensus 537 l~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred eccccchHHHHHHHHhcc
Confidence 999999999999887654
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=336.85 Aligned_cols=306 Identities=20% Similarity=0.259 Sum_probs=219.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
+++.+.+++.+|+ .|+++|.++++.++.|+|++++||||+|||..++++++ ..+++++||+||++|+.|+.+.++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4455677787898 89999999999999999999999999999975443332 2367899999999999999999998
Q ss_pred cCC----ceeEeccCC--CHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009843 101 KGI----AGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (524)
Q Consensus 101 ~gi----~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (524)
++. ....+.+.. +..+.......+..+. .+|+++||+. +...........++++||||||++.+|+
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~IlV~Tp~r------L~~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDILVTTSQF------LSKNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEEEECHHH------HHHHHHhccccccCEEEEEChHHhhhcc
Confidence 643 333333322 2334444445555544 5676666654 3333333444569999999999999877
Q ss_pred CC---------CH------------------HHHHHHHHHHHhCC-----CCCEEEEeccCChh-HHHHHHHH-hCCCCC
Q 009843 175 HD---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPK-VQKDVMES-LCLQNP 220 (524)
Q Consensus 175 ~~---------fr------------------~~~~~l~~l~~~~~-----~~~ii~lSAT~~~~-~~~~i~~~-l~l~~~ 220 (524)
++ |. +.|..+..+...+. +.+++++|||+++. +...+... +++
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~--- 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF--- 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE---
Confidence 54 42 23444444444332 56899999999875 33222211 111
Q ss_pred eEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCcccc---HHHHHHHHHhCCCceEEEcCCCCHHHH
Q 009843 221 LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKAR 297 (524)
Q Consensus 221 ~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~---~e~l~~~L~~~g~~~~~~h~~l~~~~R 297 (524)
.+-.......|+...+...+ ++...+.++++..+ ..+||||++++. ++.+++.|+..|+++..+||+| +
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~- 366 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E- 366 (1176)
T ss_pred EecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H-
Confidence 01111223345544433322 45666777777654 479999999988 9999999999999999999999 2
Q ss_pred HHHHHHHhcCCCcEEEE----cccccccccCCC-ccEEEEeCCCC------CHHHHHHHHhhcC
Q 009843 298 SSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (524)
Q Consensus 298 ~~~~~~f~~g~~~VlVa----T~a~~~GiD~p~-v~~VI~~~~p~------s~~~y~Q~~GRag 350 (524)
..+++|++|+++|||| |++++||||+|+ |++||||++|+ ..+.|.+++||+-
T Consensus 367 -~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 367 -RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 2359999999999999 689999999999 89999999998 6788999999984
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-35 Score=339.02 Aligned_cols=290 Identities=23% Similarity=0.275 Sum_probs=207.4
Q ss_pred EEcCCCChHHHHHHHHHhcC----------------CCeEEEeCcHHHHHHHHHHHHHH----------------cCCce
Q 009843 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (524)
Q Consensus 58 v~apTGsGKTl~~~lp~l~~----------------~~~~lvl~P~~~L~~q~~~~l~~----------------~gi~~ 105 (524)
|++|||||||++|.+|++.+ +.++|||+|+++|++|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998632 35799999999999999998763 35667
Q ss_pred eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHH
Q 009843 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK 183 (524)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~ 183 (524)
...++..+..++..... . ..+|+++|||.+.. .+.. ........+++|||||+|.+.+ +|..+...+.+
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL~~--LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR 151 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESLYL--MLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER 151 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHHHH--HHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH
Confidence 77777777666543221 2 25788888885521 1000 1112345699999999999975 56666655555
Q ss_pred HHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCC--cceEEEEeeCch------------------
Q 009843 184 LSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYKDLL------------------ 242 (524)
Q Consensus 184 l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~--~l~~~v~~~~~~------------------ 242 (524)
|..+ .+ +.|+|+||||..+. +++.++++...+..+....... ++.+.+...+..
T Consensus 152 L~~l---~~~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~ 226 (1490)
T PRK09751 152 LDAL---LHTSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGRE 226 (1490)
T ss_pred HHHh---CCCCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhh
Confidence 5443 43 67899999999874 5677888766555443322222 222222111100
Q ss_pred h----hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCC---------------------------------Cce
Q 009843 243 D----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------ISC 285 (524)
Q Consensus 243 ~----~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---------------------------------~~~ 285 (524)
. .....+.+.+. .+.++||||||++.|+.++..|++.. ..+
T Consensus 227 ~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia 304 (1490)
T PRK09751 227 GSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIA 304 (1490)
T ss_pred hhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceee
Confidence 0 01112222222 35689999999999999999997641 125
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCceEEEEec
Q 009843 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (524)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-G~~~~~i~~~~ 363 (524)
..|||+|+.++|..+++.|++|++++||||+++++|||+++|++||+++.|.|..+|+||+||+||. |..+.++++..
T Consensus 305 ~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 305 RSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred eeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999996 34456664443
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.9e-36 Score=301.86 Aligned_cols=331 Identities=23% Similarity=0.309 Sum_probs=248.5
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHh---cC-CCeEEEeCcHHHHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPAL---AK-PGIVLVVSPLIALM 91 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~lp~l---~~-~~~~lvl~P~~~L~ 91 (524)
...+.+++++.+.|++ -|+..+.|.|.-++++ +++|+|.+|+.+|+||||++.-++.+ .. +++.++++|+.+|+
T Consensus 196 vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 196 VDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred ccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 3447889999999998 6999999999999988 77999999999999999998876543 33 88999999999999
Q ss_pred HHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-hccCCccEEEEec
Q 009843 92 ENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDE 166 (524)
Q Consensus 92 ~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViDE 166 (524)
+|..+.+++ +|++...-.+......+... -.....++.+|+++|.|= +..+.+. ...+.++.+||||
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEG------iD~lLRtg~~lgdiGtVVIDE 346 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEG------IDYLLRTGKDLGDIGTVVIDE 346 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechh------HHHHHHcCCcccccceEEeee
Confidence 999988876 56666554443322221111 011223457777777662 2233222 5577899999999
Q ss_pred cccccc--cCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhh
Q 009843 167 AHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD 244 (524)
Q Consensus 167 aH~i~~--~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~ 244 (524)
+|.+.+ .|+-.. --++.++..+|+.|+|+||||..+. ..+.+.|+..- +...-..-.+..++.......+
T Consensus 347 iHtL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~l---V~y~~RPVplErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKL---VLYDERPVPLERHLVFARNESE 418 (830)
T ss_pred eeeccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCee---EeecCCCCChhHeeeeecCchH
Confidence 999976 554322 3467888899999999999998765 34466665431 1112222234445555554566
Q ss_pred HHHHHHHHHHhc--------CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 245 AYADLCSVLKAN--------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 245 ~~~~l~~~l~~~--------~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
|.+.+..+.+.. -.+++|||++||+.|..++..|...|+++.+||+||+..+|+.+...|.++++.++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 777777776541 246799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEe----CCCC-CHHHHHHHHhhcCCCCC--CceEEEEeccc
Q 009843 317 AFGMGIDRKDVRLVCHF----NIPK-SMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~----~~p~-s~~~y~Q~~GRagR~G~--~~~~i~~~~~~ 365 (524)
|++.|+|+|.- .||+- +.-| |+.+|.|+.|||||-+- .|.++++..+.
T Consensus 499 AL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999954 44432 2232 89999999999999874 57788887654
No 57
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-34 Score=296.21 Aligned_cols=299 Identities=18% Similarity=0.190 Sum_probs=199.4
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc--------CCceeEeccC
Q 009843 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (524)
Q Consensus 42 ~Q~~~i~~~l~g~d--~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~--------gi~~~~~~~~ 111 (524)
+|.++++++.++.+ +++.||||+|||+||++|++...+.+++++|+++|++||.+.++.+ +.....+++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998874 7889999999999999999988889999999999999999998874 2223333332
Q ss_pred CCHHHHHHHH---HHhhcCCCccc-----EEEeCcc-cccChhhHHHHHhhh----------ccCCccEEEEeccccccc
Q 009843 112 QTMQVKTKIY---EDLDSGKPSLR-----LLYVTPE-LTATPGFMSKLKKIH----------SRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 112 ~~~~~~~~~~---~~l~~~~~~~~-----ll~~tpe-~v~t~~~~~~l~~~~----------~~~~l~~iViDEaH~i~~ 172 (524)
... ...... .....+..... +.-.+|+ ++++|..+..+.... ....+++||+||+|.++.
T Consensus 81 ~~~-d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 81 TLK-DIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred chH-HHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 111 111111 00111100000 0011333 233344444332210 134689999999999998
Q ss_pred cCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccC------------C------C---C
Q 009843 173 WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N------R---P 230 (524)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~------------~------~---~ 230 (524)
|+.++...+.....+.... ...++++||||+++.+...+...+.+..+....... . + +
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLP 239 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceecc
Confidence 8877666544433333322 257899999999998877776653344444332222 1 1 3
Q ss_pred cceEEEEeeCc-hhhHHHHHHHH----HHhcCCccEEEEeCccccHHHHHHHHHhCC--CceEEEcCCCCHHHHHHHHHH
Q 009843 231 NLFYEVRYKDL-LDDAYADLCSV----LKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDD 303 (524)
Q Consensus 231 ~l~~~v~~~~~-~~~~~~~l~~~----l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~ 303 (524)
++.+.+..... ....+..+.+. ++...+.++||||+|++.++.+++.|++.| +.+..+||.+++.+|.+.
T Consensus 240 ~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~--- 316 (357)
T TIGR03158 240 PVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA--- 316 (357)
T ss_pred ceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh---
Confidence 44444443221 11222223332 333456789999999999999999999865 578899999999988654
Q ss_pred HhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcC
Q 009843 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (524)
Q Consensus 304 f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag 350 (524)
++.+|||||+++++|||++.+ +|| ++ |.+.++|+||+||+|
T Consensus 317 ---~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ---MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ---ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478999999999999999987 666 45 999999999999997
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7e-35 Score=316.09 Aligned_cols=317 Identities=16% Similarity=0.132 Sum_probs=213.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHHHHHHHHHHH
Q 009843 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIG 97 (524)
Q Consensus 25 ~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~-d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~L~~q~~~~ 97 (524)
+.....+...||+ |+|+|.++|+.++.|+ ++++.+|||+|||.++.++.+.. ..+.|+++|+++|+.|+.+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 3445666667998 9999999999999998 57888999999999655333321 23566688999999999988
Q ss_pred HHHcC---------------------------CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH---
Q 009843 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--- 147 (524)
Q Consensus 98 l~~~g---------------------------i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~--- 147 (524)
+++++ +.+..+.++...... +..+. ....|+++|++++....+.
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~---~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDP---HRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcC---CCCcEEEECHHHHcCCcccccc
Confidence 77743 334444555443321 22222 2367899998776553321
Q ss_pred ---HHH--HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeccCChhHHHHHHHHhCCCC
Q 009843 148 ---SKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (524)
Q Consensus 148 ---~~l--~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~l~~ 219 (524)
..+ ......+.+.++|+|||| .+.| |..+...|.......+ +.++++||||++.++.+..... +.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~--~~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLL--SAE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHH--ccC
Confidence 001 011124568899999999 4445 8776666654321122 2689999999988765432222 223
Q ss_pred CeEEecc---CCCCcceEEEEeeCchhhHHHH----HHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCC
Q 009843 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (524)
Q Consensus 220 ~~~~~~~---~~~~~l~~~v~~~~~~~~~~~~----l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l 292 (524)
+..+... ...+++...+. .. ...++.. +...+. ..++++||||||++.|+.+++.|++.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q~v~-v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVKLVP-PS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEEEEe-cC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222211 11122222111 11 1223323 322333 3456899999999999999999999887 8999999
Q ss_pred CHHHHH-----HHHHHHhc----CC-------CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 009843 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (524)
Q Consensus 293 ~~~~R~-----~~~~~f~~----g~-------~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~ 356 (524)
++.+|. .++++|++ |+ ..|||||+++++|||++. .+||++..| .++|+||+||+||.|+.+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 78999987 44 689999999999999986 888887766 799999999999999854
Q ss_pred eE-EEEe
Q 009843 357 KS-LLYY 362 (524)
Q Consensus 357 ~~-i~~~ 362 (524)
.+ +.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 33 4444
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.3e-35 Score=299.42 Aligned_cols=303 Identities=17% Similarity=0.111 Sum_probs=190.7
Q ss_pred CEEEEcCCCChHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc-CCceeEeccCCCHHH---------HHH
Q 009843 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQV---------KTK 119 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~-gi~~~~~~~~~~~~~---------~~~ 119 (524)
|+++.||||+|||++|++|++. ..++++|++|+++|+.|+.+.++.. +.....+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999883 3679999999999999999999985 654444443322110 001
Q ss_pred HHHHhhcCC---CcccEEEeCcccccChhhH---HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC
Q 009843 120 IYEDLDSGK---PSLRLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (524)
Q Consensus 120 ~~~~l~~~~---~~~~ll~~tpe~v~t~~~~---~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (524)
......... ....+.++||+.+...-+. ......... ..+++|+||||.+.+++.++ +..+..... ..+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~-~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~ 155 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASI-ANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DND 155 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHh-cCCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcC
Confidence 111111110 1133555555543211000 001111111 14789999999998865332 222222222 247
Q ss_pred CCEEEEeccCChhHHHHHHHHhCCC-CCeEEeccCCCCcceEEEEe-eCchhhHHHHHHHHHHh-cCCccEEEEeCcccc
Q 009843 194 VPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKA-NGDTCAIVYCLERTT 270 (524)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~l~-~~~~~~~~~~~~~l~~~v~~-~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~ 270 (524)
.|+++||||++..+.+. ....... .+..+.....+....+.+.. ......+...+.++++. ..+.++||||+|++.
T Consensus 156 ~~~i~~SATlp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEY-AEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHH-HhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 89999999998654332 2222111 11111111000000111111 11111233344444443 245789999999999
Q ss_pred HHHHHHHHHhCCC--ceEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHH
Q 009843 271 CDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (524)
Q Consensus 271 ~e~l~~~L~~~g~--~~~~~h~~l~~~~R~~----~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q 344 (524)
|+.+++.|++.+. .+..+||++++.+|.. +++.|++|+.+|||||+++++|||++ +.+||++..| .++|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999998766 5999999999999976 48899999999999999999999995 8899988766 889999
Q ss_pred HHhhcCCCCCCc----eEEEEecccc
Q 009843 345 ESGRAGRDQLPS----KSLLYYGMDD 366 (524)
Q Consensus 345 ~~GRagR~G~~~----~~i~~~~~~d 366 (524)
|+||+||.|+.. ..++++...+
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999998643 5666655443
No 60
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-36 Score=290.87 Aligned_cols=345 Identities=19% Similarity=0.226 Sum_probs=270.8
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-------CCeEEEeC
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVS 85 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-------~~~~lvl~ 85 (524)
.+-.|+.+++...+.+++.+ -||..|+|.|++.|+.+++++|+...+-||+|||.||++|++++ +-++++++
T Consensus 19 g~g~fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 19 GSGGFQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred CCCCccccCCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 35678899999999999998 59999999999999999999999999999999999999999875 34899999
Q ss_pred cHHHHHHHHHHHHHHcCCc----eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccE
Q 009843 86 PLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (524)
Q Consensus 86 P~~~L~~q~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~ 161 (524)
|+++|+.|..+..+.+|-- ...+.+.... .+.+..+.. + .+++++||..+...+. .-...+..+.+
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~---eeqf~~l~~-n--pDii~ATpgr~~h~~v----em~l~l~svey 167 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSI---EEQFILLNE-N--PDIIIATPGRLLHLGV----EMTLTLSSVEY 167 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchH---HHHHHHhcc-C--CCEEEecCceeeeeeh----heeccccceee
Confidence 9999999999998886532 2222222222 222232222 2 3455555543322111 11133556889
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCC---CcceEEEE
Q 009843 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLFYEVR 237 (524)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l~~~v~ 237 (524)
+|+|||+.+.++| |. .++..+...+| +.+.++||||.+..... ...-++.+|..++..... +.+.....
T Consensus 168 VVfdEadrlfemg--fq---eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~ 240 (529)
T KOG0337|consen 168 VVFDEADRLFEMG--FQ---EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFF 240 (529)
T ss_pred eeehhhhHHHhhh--hH---HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhhee
Confidence 9999999999988 44 66777888888 67899999999987666 444577788777632211 22221111
Q ss_pred eeCchhhHHHHHHHHHHhcC-CccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 238 YKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~-~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
.. ...++...|..++.... +.+++||+.|...++.+...|+..|+.+..++|.|++..|..-..+|..++..++|.|+
T Consensus 241 ~~-~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTd 319 (529)
T KOG0337|consen 241 RV-RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTD 319 (529)
T ss_pred ee-ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEeh
Confidence 11 12567788888887643 46799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
.+++|+|+|-...||+||+|.+..-|+||+||+.|.|+.|.++.++.+.|...+-.+...
T Consensus 320 vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred hhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999988766655443
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-33 Score=299.94 Aligned_cols=326 Identities=21% Similarity=0.191 Sum_probs=233.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++.+|. .|++.|..++..++.|+ ++.|.||+|||++|.+|++.. +..++|++|++.|+.|..+.+..
T Consensus 92 ~rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 34556677887 57799999999999998 999999999999999999865 77899999999999998888766
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh----------------------hhcc
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----------------------IHSR 156 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~----------------------~~~~ 156 (524)
+|+.+..+.+......+...+ ..+|+|+|.--++-.-+...+.. ..-.
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 240 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLL 240 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcc
Confidence 588988888877655443322 26889998764432222211110 1113
Q ss_pred CCccEEEEecccccc-c-----------c-CC--------------------CCH-------------------------
Q 009843 157 GLLNLVAIDEAHCIS-S-----------W-GH--------------------DFR------------------------- 178 (524)
Q Consensus 157 ~~l~~iViDEaH~i~-~-----------~-g~--------------------~fr------------------------- 178 (524)
..+.+.||||+|.+. + - .. +|.
T Consensus 241 r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l 320 (656)
T PRK12898 241 RGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESL 320 (656)
T ss_pred cccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcc
Confidence 457889999999874 1 0 00 111
Q ss_pred -HHHH----HHHH----HHHh---------------------------------------------CC------------
Q 009843 179 -PSYR----KLSS----LRNY---------------------------------------------LP------------ 192 (524)
Q Consensus 179 -~~~~----~l~~----l~~~---------------------------------------------~~------------ 192 (524)
+.|. .... ++.. ++
T Consensus 321 ~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It 400 (656)
T PRK12898 321 PPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARIT 400 (656)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeeh
Confidence 0010 0000 0000 00
Q ss_pred -------CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcce--EEEEeeCchhhHHHHHHHHHHhc--CCccE
Q 009843 193 -------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCA 261 (524)
Q Consensus 193 -------~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~--~~v~~~~~~~~~~~~l~~~l~~~--~~~~~ 261 (524)
-..+.+||||+... .+++...+++. +.. .+.++|+.. +..........+...|.+.++.. .+.++
T Consensus 401 ~q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~-vv~--IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 401 YQRFFRRYLRLAGMTGTAREV-AGELWSVYGLP-VVR--IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHHhhHHHhcccCcChHH-HHHHHHHHCCC-eEE--eCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 01477899999864 46666666664 333 344444432 11111122356778888888653 35789
Q ss_pred EEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCC---Ccc-----EEEEe
Q 009843 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHF 333 (524)
Q Consensus 262 IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p---~v~-----~VI~~ 333 (524)
||||+|++.++.+++.|.+.|+++..+||+++..+ ..+..+..+...|+|||+++++|+|++ +|+ +||++
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 99999999999999999999999999999876544 445555666667999999999999999 776 99999
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHH
Q 009843 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (524)
Q Consensus 334 ~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~ 368 (524)
++|.|.+.|.||+||+||.|.+|.++.|++.+|.-
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999999999999988753
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-33 Score=279.86 Aligned_cols=317 Identities=22% Similarity=0.277 Sum_probs=230.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHH-cCCc---ee
Q 009843 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA---GE 106 (524)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~-~gi~---~~ 106 (524)
+.-++|.+|..+....+.+ ++++++|||-|||+++.+-+.. .++++|+++||+-|+.|+...+++ +|++ ..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3457899999999888876 8999999999999988766543 266899999999999999999988 6775 45
Q ss_pred EeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009843 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (524)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (524)
.+++.....++...|.. -++++.||.++.+.- +....+...+.++|+||||+... + + .|..+..
T Consensus 91 ~ltGev~p~~R~~~w~~-------~kVfvaTPQvveNDl----~~Grid~~dv~~lifDEAHRAvG-n--y--AYv~Va~ 154 (542)
T COG1111 91 ALTGEVRPEEREELWAK-------KKVFVATPQVVENDL----KAGRIDLDDVSLLIFDEAHRAVG-N--Y--AYVFVAK 154 (542)
T ss_pred eecCCCChHHHHHHHhh-------CCEEEeccHHHHhHH----hcCccChHHceEEEechhhhccC-c--c--hHHHHHH
Confidence 78888888888777763 678888887765421 13345556688999999999753 1 1 2444443
Q ss_pred -HHHhCCCCCEEEEeccCChh--HHHHHHHHhCCCCCeEEeccCCC---Ccc---eEEEE--------------------
Q 009843 187 -LRNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSSFNR---PNL---FYEVR-------------------- 237 (524)
Q Consensus 187 -l~~~~~~~~ii~lSAT~~~~--~~~~i~~~l~l~~~~~~~~~~~~---~~l---~~~v~-------------------- 237 (524)
+.+.-.+..+++|||||... -...++..|++..-.+ +..-+. |.+ ..+..
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vev-rTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~ 233 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEV-RTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK 233 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEE-ecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH
Confidence 33333355699999999653 3344555555532111 110000 000 00000
Q ss_pred ----------------------------------ee-Cch----------------------------------------
Q 009843 238 ----------------------------------YK-DLL---------------------------------------- 242 (524)
Q Consensus 238 ----------------------------------~~-~~~---------------------------------------- 242 (524)
.. +..
T Consensus 234 ~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~ 313 (542)
T COG1111 234 PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA 313 (542)
T ss_pred HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 00 000
Q ss_pred ---------------------------------hhHHHHHHHHH----HhcCCccEEEEeCccccHHHHHHHHHhCCCce
Q 009843 243 ---------------------------------DDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (524)
Q Consensus 243 ---------------------------------~~~~~~l~~~l----~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~ 285 (524)
..|++.+.+++ +..++.++|||++.|+.++.+.+.|.+.|+.+
T Consensus 314 ~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~ 393 (542)
T COG1111 314 TKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA 393 (542)
T ss_pred cccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc
Confidence 01222333333 33467799999999999999999999998876
Q ss_pred E-E--------EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 009843 286 A-A--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (524)
Q Consensus 286 ~-~--------~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~ 356 (524)
. . ...||+++++.++++.|++|+++|||||++.++|+|+|++++||.|+.-.|.--++||.||+||. ++|
T Consensus 394 ~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~G 472 (542)
T COG1111 394 RVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKG 472 (542)
T ss_pred eeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCC
Confidence 3 2 33579999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred eEEEEeccccHHHH
Q 009843 357 KSLLYYGMDDRRRM 370 (524)
Q Consensus 357 ~~i~~~~~~d~~~~ 370 (524)
.+++++..+.....
T Consensus 473 rv~vLvt~gtrdea 486 (542)
T COG1111 473 RVVVLVTEGTRDEA 486 (542)
T ss_pred eEEEEEecCchHHH
Confidence 99999888854433
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.7e-33 Score=301.13 Aligned_cols=298 Identities=18% Similarity=0.245 Sum_probs=203.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHH---------HHHHHhc---------CCCeEEEeCcHHHHHHHHHHHHHH-c-
Q 009843 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKE-K- 101 (524)
Q Consensus 42 ~Q~~~i~~~l~g~d~lv~apTGsGKTl~---------~~lp~l~---------~~~~~lvl~P~~~L~~q~~~~l~~-~- 101 (524)
.|.++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++|+++|+.|....+.+ .
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999986 3333322 245899999999999998888765 2
Q ss_pred -----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCC
Q 009843 102 -----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (524)
Q Consensus 102 -----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (524)
|.++....++..... .. .... ...++++|+.+ . ......+++|||||||..+..+ |
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~----~~-t~~k--~~~Ilv~T~~L-~----------l~~L~~v~~VVIDEaHEr~~~~-D 308 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDEL----IN-TNPK--PYGLVFSTHKL-T----------LNKLFDYGTVIIDEVHEHDQIG-D 308 (675)
T ss_pred ccccCCceEEEEECCcchHH----hh-cccC--CCCEEEEeCcc-c----------ccccccCCEEEccccccCccch-h
Confidence 223334444433111 00 0101 24566666532 1 1124468999999999998765 2
Q ss_pred CHHHHHHHHHHHHhCCC-CCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC-CCcceEEEEeeC--------chhhHH
Q 009843 177 FRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD--------LLDDAY 246 (524)
Q Consensus 177 fr~~~~~l~~l~~~~~~-~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-~~~l~~~v~~~~--------~~~~~~ 246 (524)
..+.-++...+. .++++||||++.++.. +...+ .+|..+...-. ..++........ ......
T Consensus 309 -----llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 309 -----IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred -----HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 112222222222 4799999999877643 44444 34544433211 122222111110 001111
Q ss_pred HHHHHHHHh---cCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEcccccc
Q 009843 247 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFGM 320 (524)
Q Consensus 247 ~~l~~~l~~---~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~VlVaT~a~~~ 320 (524)
..+...+.. ..++++|||++++.+++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||+++++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 222333322 23468999999999999999999987 78999999999974 4666777 6899999999999999
Q ss_pred cccCCCccEEEEeC---CCC---------CHHHHHHHHhhcCCCCCCceEEEEeccccHHH
Q 009843 321 GIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (524)
Q Consensus 321 GiD~p~v~~VI~~~---~p~---------s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~ 369 (524)
|||+|+|++||+++ .|. |.++|.||+|||||. ++|.|+.+|+.++...
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP 518 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH
Confidence 99999999999999 665 899999999999999 7999999999887543
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.5e-33 Score=298.65 Aligned_cols=299 Identities=16% Similarity=0.112 Sum_probs=203.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHH---hcC-CCeEEEeCcHHHHHHHHHHHHHHcCCc----eeEe
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~---l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~----~~~~ 108 (524)
-.||++|.+++..++.+++.++++|||+|||+++...+ +.. .+++||++|+++|+.|+.+.+++++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999999765432 233 348999999999999999999986531 1111
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
.++... .....++++||..+.... . .....+++||+||||++.. ..+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~~~~------~-~~~~~~~~iIvDEaH~~~~---------~~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAVKQP------K-EWFDQFGMVIVDECHLFTG---------KSLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHhhch------h-hhccccCEEEEEchhcccc---------hhHHHHH
Confidence 111110 012467777766543211 1 1234689999999999874 2234455
Q ss_pred HhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccC----CCC---cceEEE-E---------------eeC----
Q 009843 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRP---NLFYEV-R---------------YKD---- 240 (524)
Q Consensus 189 ~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~----~~~---~l~~~v-~---------------~~~---- 240 (524)
..++ ..++++||||+.......+. ..++-.|.....+. ... .+.+.. . +..
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~-~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQ-YVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHH-HHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 5565 45699999999754322111 00011111111000 000 000000 0 000
Q ss_pred --chhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-
Q 009843 241 --LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (524)
Q Consensus 241 --~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT- 315 (524)
....+...+.+.+.. ..+.+++|||.++++++.+++.|.+.|.++..+||+++.++|..+++.|++|+..|||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 001111222333221 235678888899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
+.+++|+|+|+++.||++..|+|...|+|++||++|.+......++|+.-
T Consensus 403 ~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~v 452 (501)
T PHA02558 403 GVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDII 452 (501)
T ss_pred ceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEee
Confidence 89999999999999999999999999999999999997655444444433
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3e-32 Score=295.58 Aligned_cols=325 Identities=21% Similarity=0.214 Sum_probs=240.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++.+|. .|++.|..++..+++|+ ++.|.||+|||++|.+|++. .+..++|++|+..|+.|..+.+..
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 45566778898 79999999988888886 99999999999999999974 488999999999999998888766
Q ss_pred --cCCceeEeccCCC-HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc-cc
Q 009843 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS-SW 173 (524)
Q Consensus 101 --~gi~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~-~~ 173 (524)
+|+.+..+.+..+ ...+...+ ..+|+|+||..++-.-+...+. .......+.++||||||.++ +.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 5899998888777 55544322 2689999987664332222221 11234568999999999985 10
Q ss_pred --------C----------------------CCC-----------------------------HHHHHHH-H----HHHH
Q 009843 174 --------G----------------------HDF-----------------------------RPSYRKL-S----SLRN 189 (524)
Q Consensus 174 --------g----------------------~~f-----------------------------r~~~~~l-~----~l~~ 189 (524)
| .+| .+....+ . .++.
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 0 011 0111111 0 0110
Q ss_pred h---------------------------------------------CC-------------------CCCEEEEeccCCh
Q 009843 190 Y---------------------------------------------LP-------------------DVPILALTATAAP 205 (524)
Q Consensus 190 ~---------------------------------------------~~-------------------~~~ii~lSAT~~~ 205 (524)
. ++ -..+.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 0 00 0146788888754
Q ss_pred hHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhC
Q 009843 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (524)
Q Consensus 206 ~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (524)
.. ..+.+..++ .++..+.++|....... .......+...+.+.+.. ..+.++||||+|++.++.+++.|.+.
T Consensus 376 ~~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 EE-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HH-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 33 445554444 34455666776654321 112335678888887765 36789999999999999999999999
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccC---CCcc-----EEEEeCCCCCHHHHHHHHhhcCCCC
Q 009843 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (524)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~---p~v~-----~VI~~~~p~s~~~y~Q~~GRagR~G 353 (524)
|+++..+||++..+++..+...+..| +|+|||+++|+|+|+ |+|. +||++++|.|.+.|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999998888888777766 799999999999999 6999 9999999999999999999999999
Q ss_pred CCceEEEEeccccH
Q 009843 354 LPSKSLLYYGMDDR 367 (524)
Q Consensus 354 ~~~~~i~~~~~~d~ 367 (524)
.+|.++.|++.+|.
T Consensus 530 ~~G~s~~~is~eD~ 543 (790)
T PRK09200 530 DPGSSQFFISLEDD 543 (790)
T ss_pred CCeeEEEEEcchHH
Confidence 99999999998775
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.8e-33 Score=305.59 Aligned_cols=333 Identities=23% Similarity=0.262 Sum_probs=245.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l 98 (524)
..+...+.. .|...|..+|.+|+..+.+|+|++|..|||||||.||++|++.. ..++|+|.||+||++||+++|
T Consensus 57 ~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 57 ESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERL 135 (851)
T ss_pred hHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHH
Confidence 334666666 68888999999999999999999999999999999999999864 557899999999999999999
Q ss_pred HHc----C--CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc-
Q 009843 99 KEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS- 171 (524)
Q Consensus 99 ~~~----g--i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~- 171 (524)
+++ + +....+++.....++..+ ..++ .+|++++|+|+-..-....-.-......+++||+||+|..-
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~----~~~p--p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAI----IRNP--PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHH----HhCC--CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 873 4 566777777776665433 3333 67888888866431111111111222349999999999983
Q ss_pred ccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeE-EeccCCCCcceEEEEeeCc--------
Q 009843 172 SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDL-------- 241 (524)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~-~~~~~~~~~l~~~v~~~~~-------- 241 (524)
-.|.+..-..++|..+.+..+ +.++|+.|||....... ...+...+... +..+-.+....+.+...+.
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~--~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEF--AEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHH--HHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 367777777788888877776 56699999998765322 33333222222 3333333333333333320
Q ss_pred hhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHH----HHHHhCC----CceEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009843 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (524)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (524)
.......+..++.. ..+-++|+|+.+++.++.++ ..+...+ ..+..|+|++..++|..+...|++|++.+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 01222223222222 24668999999999999997 4444445 56899999999999999999999999999
Q ss_pred EEEcccccccccCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 312 VVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 312 lVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
+++|+++.-|||+.++..||..+.|. +..++.|+.|||||.++.+..++.+..+
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999 9999999999999999888777776633
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=8.2e-32 Score=289.51 Aligned_cols=322 Identities=19% Similarity=0.200 Sum_probs=230.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 009843 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (524)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (524)
.++..+++|. +|+|.+++..+..++..++.|+||+|||++|.+|++. .+..++|++|++.|+.|+.+.+..
T Consensus 60 rEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 4455566674 6666666666665556799999999999999999865 366799999999999999988744
Q ss_pred -cCCceeEeccCC-----CHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---hhccCCccEEEEecccccc
Q 009843 101 -KGIAGEFLSSTQ-----TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 101 -~gi~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~ 171 (524)
+|+.+....... ....+... ...+|+|+||..++..-+...+.. ......+.++||||||.++
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~--------y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKI--------YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHh--------CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 688877655431 11122111 127899999998865444433322 2234568999999999984
Q ss_pred c-cC------------------------------CCCH-----------------------------HHHH----HHH-H
Q 009843 172 S-WG------------------------------HDFR-----------------------------PSYR----KLS-S 186 (524)
Q Consensus 172 ~-~g------------------------------~~fr-----------------------------~~~~----~l~-~ 186 (524)
- .. .+|. +... .+. .
T Consensus 209 iDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~a 288 (762)
T TIGR03714 209 LDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLA 288 (762)
T ss_pred hccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHH
Confidence 1 00 0110 0000 000 0
Q ss_pred HHHh---------------------------------------------------------------CC-CCCEEEEecc
Q 009843 187 LRNY---------------------------------------------------------------LP-DVPILALTAT 202 (524)
Q Consensus 187 l~~~---------------------------------------------------------------~~-~~~ii~lSAT 202 (524)
++.. |. -..+.+||+|
T Consensus 289 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 368 (762)
T TIGR03714 289 LRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGT 368 (762)
T ss_pred HHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 0000 00 0247789999
Q ss_pred CChhHHHHHHHHhCCCCCeEEeccCCCCcceEEE---EeeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHH
Q 009843 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAY 277 (524)
Q Consensus 203 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~ 277 (524)
+... ..++....++ .++..+.++|...... .+. ....++..+.+.+++ ..+.++||||+|++.++.++..
T Consensus 369 a~~~-~~Ef~~iY~l---~v~~IPt~kp~~r~d~~d~i~~-~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~ 443 (762)
T TIGR03714 369 GKVA-EKEFIETYSL---SVVKIPTNKPIIRIDYPDKIYA-TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSEL 443 (762)
T ss_pred ChhH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHH
Confidence 7543 3445554443 3455667777665442 222 235678888887765 4678999999999999999999
Q ss_pred HHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCC---------CccEEEEeCCCCCHHHHHHHHhh
Q 009843 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGR 348 (524)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p---------~v~~VI~~~~p~s~~~y~Q~~GR 348 (524)
|.+.|+++..+||++..+++..+.+.++.| .|+|||+++|+|+|++ ++.+|++++.|..... .||+||
T Consensus 444 L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GR 520 (762)
T TIGR03714 444 LLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGR 520 (762)
T ss_pred HHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhc
Confidence 999999999999999999888887777666 7999999999999999 8999999999988776 999999
Q ss_pred cCCCCCCceEEEEeccccH
Q 009843 349 AGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 349 agR~G~~~~~i~~~~~~d~ 367 (524)
+||.|.+|.++.|++.+|.
T Consensus 521 tGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 521 SGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred ccCCCCceeEEEEEccchh
Confidence 9999999999999998875
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-32 Score=302.50 Aligned_cols=303 Identities=17% Similarity=0.136 Sum_probs=210.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHH
Q 009843 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTK 119 (524)
Q Consensus 44 ~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~ 119 (524)
.+++.++.++++++++||||+|||.+|.++++.. +++++|+.|++.++.|..+++.+ ++.......+.....+.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~-- 85 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN-- 85 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc--
Confidence 4566777788999999999999999999888754 57999999999999999998753 44332211111111100
Q ss_pred HHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHhC-CCCCEE
Q 009843 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYL-PDVPIL 197 (524)
Q Consensus 120 ~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~~-~~~~ii 197 (524)
......+|.++||.++. ..+........+++|||||+|. ..+- ||--. .+..+...+ ++.+++
T Consensus 86 ------~~s~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~--ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 86 ------KVSRRTRLEVVTEGILT-----RMIQDDPELDGVGALIFDEFHERSLDA--DLGLA--LALDVQSSLREDLKIL 150 (819)
T ss_pred ------ccCCCCcEEEECCcHHH-----HHHhhCcccccCCEEEEeccchhhhcc--chHHH--HHHHHHHhcCCCceEE
Confidence 01123567777765442 2333344567799999999995 4331 22211 122333333 478899
Q ss_pred EEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhh----HHHHHHHHHHhcCCccEEEEeCccccHHH
Q 009843 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLERTTCDE 273 (524)
Q Consensus 198 ~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~----~~~~l~~~l~~~~~~~~IIf~~s~~~~e~ 273 (524)
+||||++.... ...+ .++.++...-..-.+...+......+. ....+...++. ..+.+|||++++.+++.
T Consensus 151 lmSATl~~~~l---~~~l--~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~ 224 (819)
T TIGR01970 151 AMSATLDGERL---SSLL--PDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRR 224 (819)
T ss_pred EEeCCCCHHHH---HHHc--CCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHH
Confidence 99999987653 2333 222233221111112211211111111 12234444444 35679999999999999
Q ss_pred HHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCC-------------
Q 009843 274 LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------- 337 (524)
Q Consensus 274 l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~------------- 337 (524)
+++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 225 l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L 304 (819)
T TIGR01970 225 VQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRL 304 (819)
T ss_pred HHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCcee
Confidence 9999987 478899999999999999999999999999999999999999999999999999985
Q ss_pred -----CHHHHHHHHhhcCCCCCCceEEEEeccccHHHH
Q 009843 338 -----SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (524)
Q Consensus 338 -----s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~ 370 (524)
|..+|.||+|||||. .+|.|+.+|+.++...+
T Consensus 305 ~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 305 ETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred eEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 456799999999999 79999999998776543
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.9e-33 Score=305.51 Aligned_cols=302 Identities=19% Similarity=0.203 Sum_probs=208.2
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHH
Q 009843 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTK 119 (524)
Q Consensus 44 ~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~ 119 (524)
.+++.++.++++++++||||+|||.+|.++++.. .++++|+.|+++++.|..+.+.+ ++.......+.....+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~--- 87 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE--- 87 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc---
Confidence 3556677788999999999999999999988865 46899999999999999988754 4433211111111000
Q ss_pred HHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEE
Q 009843 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198 (524)
Q Consensus 120 ~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~ 198 (524)
.......+|.++||.++ ...+........+++|||||+|..+- ..|+. ...+..+.+.+ ++.++++
T Consensus 88 -----~~~~~~t~I~v~T~G~L-----lr~l~~d~~L~~v~~IIlDEaHER~l-~~Dl~--L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 88 -----SKVGPNTRLEVVTEGIL-----TRMIQRDPELSGVGLVILDEFHERSL-QADLA--LALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred -----cccCCCCcEEEEChhHH-----HHHHhhCCCcCcCcEEEEcCCCcccc-ccchH--HHHHHHHHHhCCccceEEE
Confidence 00112246766666543 22233334567799999999997321 12221 11122333433 4788999
Q ss_pred EeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHH-----HHHHHHHHhcCCccEEEEeCccccHHH
Q 009843 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERTTCDE 273 (524)
Q Consensus 199 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~IIf~~s~~~~e~ 273 (524)
||||++.... ...+ .++.++...-..-.+...+..... ..++ ..+...++. ..+.+|||++++++++.
T Consensus 155 mSATl~~~~l---~~~~--~~~~~I~~~gr~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~ 227 (812)
T PRK11664 155 MSATLDNDRL---QQLL--PDAPVIVSEGRSFPVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQR 227 (812)
T ss_pred EecCCCHHHH---HHhc--CCCCEEEecCccccceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHH
Confidence 9999987533 2332 233233222111112222211111 1222 234444443 35689999999999999
Q ss_pred HHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCC-------------
Q 009843 274 LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------- 337 (524)
Q Consensus 274 l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~------------- 337 (524)
+++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++++
T Consensus 228 l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L 307 (812)
T PRK11664 228 VQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRL 307 (812)
T ss_pred HHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCccee
Confidence 9999987 578899999999999999999999999999999999999999999999999999875
Q ss_pred -----CHHHHHHHHhhcCCCCCCceEEEEeccccHHH
Q 009843 338 -----SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (524)
Q Consensus 338 -----s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~ 369 (524)
|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 308 ~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 308 VTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred EEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 456899999999999 6999999999776543
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.1e-31 Score=299.67 Aligned_cols=313 Identities=20% Similarity=0.272 Sum_probs=221.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHc-CC---ceeEe
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFL 108 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~-gi---~~~~~ 108 (524)
-++|++|.+++..++.+ ++++++|||+|||+++++++.. .++++|||+|+++|+.|+.+.++++ ++ ....+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 47899999999988877 8999999999999998877653 2789999999999999999999884 44 45556
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
++......+...+. ..+++++||+++... .+........++++||||||++... +.+. ..+..++
T Consensus 93 ~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~----l~~~~~~~~~~~liVvDEaH~~~~~-~~~~---~i~~~~~ 157 (773)
T PRK13766 93 TGEVSPEKRAELWE-------KAKVIVATPQVIEND----LIAGRISLEDVSLLIFDEAHRAVGN-YAYV---YIAERYH 157 (773)
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECHHHHHHH----HHcCCCChhhCcEEEEECCcccccc-ccHH---HHHHHHH
Confidence 66665555444332 256888888765321 1122334456899999999998642 1111 1222334
Q ss_pred HhCCCCCEEEEeccCChh--HHHHHHHHhCCCCCeEEecc--------CCCCcceEEE----------------------
Q 009843 189 NYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSS--------FNRPNLFYEV---------------------- 236 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~--~~~~i~~~l~l~~~~~~~~~--------~~~~~l~~~v---------------------- 236 (524)
...+...+++||||+... ....+...|++.... +... +..+.+.+..
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~-~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVE-VRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEE-EcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 444455699999998432 222333333321100 0000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009843 237 -------------------------------------------------------------------------------- 236 (524)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (524)
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence
Q ss_pred -----------------------EeeCchhhHHHHHHHHHHh----cCCccEEEEeCccccHHHHHHHHHhCCCceEEEc
Q 009843 237 -----------------------RYKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (524)
Q Consensus 237 -----------------------~~~~~~~~~~~~l~~~l~~----~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h 289 (524)
........|+..|.+++++ .++.++||||++++.|+.+++.|...|+.+..+|
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 0000001234445555543 4678999999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 290 AG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 290 ~~--------l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
|. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+|+.|++...|+||+||+||.|. +.++++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l 475 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVL 475 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEE
Confidence 86 999999999999999999999999999999999999999999999999999999999999865 777777
Q ss_pred eccccH
Q 009843 362 YGMDDR 367 (524)
Q Consensus 362 ~~~~d~ 367 (524)
+..+..
T Consensus 476 ~~~~t~ 481 (773)
T PRK13766 476 IAKGTR 481 (773)
T ss_pred EeCCCh
Confidence 765544
No 71
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.9e-31 Score=304.16 Aligned_cols=290 Identities=19% Similarity=0.278 Sum_probs=203.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
.++.+.+.+..|+ .|++.|+.+++.++.|+|++++||||+|||+ |.+|+. ..+++++||+||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3455555555565 7999999999999999999999999999997 555543 236789999999999999999988
Q ss_pred Hc----CCcee---EeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 100 EK----GIAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 100 ~~----gi~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
.+ ++... .+++..+...+......+..+. .+|+++||..+ ......... .++++||||||++.+
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~Tp~rL------~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILITTTMFL------SKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH------HHHHHHhcC-CCCEEEEeChHhhhh
Confidence 75 33332 3567777666655566666554 56766666543 332222222 699999999999998
Q ss_pred cC---------CCCHHH-HHHH-------------------HHHHHhCC-CCC--EEEEeccCChh-HHHHHHHHhCCCC
Q 009843 173 WG---------HDFRPS-YRKL-------------------SSLRNYLP-DVP--ILALTATAAPK-VQKDVMESLCLQN 219 (524)
Q Consensus 173 ~g---------~~fr~~-~~~l-------------------~~l~~~~~-~~~--ii~lSAT~~~~-~~~~i~~~l~l~~ 219 (524)
++ .+|.++ ...+ ..+.+..| +.+ ++++|||..+. +...+. .+
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~-----r~ 288 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLF-----RE 288 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHc-----cc
Confidence 65 346653 2221 11222333 334 56789995443 332221 12
Q ss_pred CeEEe---ccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCcc---ccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 220 PLVLK---SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 220 ~~~~~---~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~---~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
...+. ......|+...+.... .+...+.++++..+ ..+||||+++ +.|+++++.|.+.|+++..+||+++
T Consensus 289 ll~~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 289 LLGFEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred ccceEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 22121 1222334443333222 12345667776654 5799999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCcEEEEc----ccccccccCCC-ccEEEEeCCCC
Q 009843 294 DKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (524)
Q Consensus 294 ~~~R~~~~~~f~~g~~~VlVaT----~a~~~GiD~p~-v~~VI~~~~p~ 337 (524)
. .++++|++|+++||||| +++++|||+|+ |++|||||+|+
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3 68999999999999994 89999999999 89999999997
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.3e-30 Score=285.60 Aligned_cols=319 Identities=19% Similarity=0.214 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecc
Q 009843 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (524)
.+++.|.++++.+.++ +++++.||||+|||.+|+.++ +..++++||++|+++|+.|+.+.+++ +|.....+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999997654 44578999999999999999999987 6888999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHH
Q 009843 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (524)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~ 188 (524)
..+..++...+..+..+. .+++++|+..+. ....++++|||||+|..+.++.+ .|.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALF-----------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhc-----------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 988888888887777765 678888875442 22456899999999998876654 4434 5677777
Q ss_pred HhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC---CCcceEEEEee--------CchhhHHHHHHHHHHhcC
Q 009843 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYK--------DLLDDAYADLCSVLKANG 257 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~v~~~--------~~~~~~~~~l~~~l~~~~ 257 (524)
....+.+++++|||++.+....+... ......+...+. .|.+...-... ......++.+.+.++ .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 77789999999999987766544321 111111111111 22222111000 001122223333332 3
Q ss_pred CccEEEEeCcc------------------------------------------------------------ccHHHHHHH
Q 009843 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (524)
Q Consensus 258 ~~~~IIf~~s~------------------------------------------------------------~~~e~l~~~ 277 (524)
++++|||+|++ ..++++++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 55788887753 145788899
Q ss_pred HHhC--CCceEEEcCCCC--HHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC--CC----------CHHH
Q 009843 278 LSAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--PK----------SMEA 341 (524)
Q Consensus 278 L~~~--g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~--p~----------s~~~ 341 (524)
|++. +.++..+|+++. .++++.++++|.+|+.+|||+|++++.|+|+|+|.+|+.++. +. ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 9886 789999999986 467899999999999999999999999999999999965553 32 3467
Q ss_pred HHHHHhhcCCCCCCceEEEEeccccHHHHHHHH
Q 009843 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (524)
Q Consensus 342 y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~ 374 (524)
|.|++||+||.+..|.+++.....+...+..+.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 899999999999999999876544433344433
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=291.97 Aligned_cols=319 Identities=21% Similarity=0.269 Sum_probs=227.6
Q ss_pred ChhHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHhcC----CCeEEEeCcHHHHHHHHH
Q 009843 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQV 95 (524)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l-~g~d~lv~apTGsGKTl~~~lp~l~~----~~~~lvl~P~~~L~~q~~ 95 (524)
.+.+.+...++. .|+.++.+.|++++.+.+ +++|+++.+|||+|||+.+.+.++.. ++++|+|+|+++|+++.+
T Consensus 15 ~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 15 KLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKY 93 (766)
T ss_pred cccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHH
Confidence 466777777776 799899999999998865 45999999999999999998887643 579999999999999999
Q ss_pred HHHH---HcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhh--ccCCccEEEEeccccc
Q 009843 96 IGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHCI 170 (524)
Q Consensus 96 ~~l~---~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~--~~~~l~~iViDEaH~i 170 (524)
++++ .+|+++...++....... . + ...+++++|||.+-. +.+.. ....++++||||+|.+
T Consensus 94 ~~~~~~~~~GirV~~~TgD~~~~~~-~----l----~~~~ViVtT~EK~Ds------l~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 94 EEFSRLEELGIRVGISTGDYDLDDE-R----L----ARYDVIVTTPEKLDS------LTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred HHhhhHHhcCCEEEEecCCcccchh-h----h----ccCCEEEEchHHhhH------hhhcCcchhhcccEEEEeeeeec
Confidence 9988 689999998877653321 1 1 137788888885531 11111 2345899999999999
Q ss_pred ccc--CCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCe-EEe-ccCCCCcc-eEEEEeeC-----
Q 009843 171 SSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLK-SSFNRPNL-FYEVRYKD----- 240 (524)
Q Consensus 171 ~~~--g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~-~~~-~~~~~~~l-~~~v~~~~----- 240 (524)
.+. |.-.. .-+...+...+.+++++||||.++. .++..+++-.... .+. .+..++.. ...+....
T Consensus 159 ~d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~ 233 (766)
T COG1204 159 GDRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT 233 (766)
T ss_pred CCcccCceeh---hHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccc
Confidence 763 32211 2234445555668999999999875 5667777654321 111 12222211 11111111
Q ss_pred ----chhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC---------------------C-------------
Q 009843 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------G------------- 282 (524)
Q Consensus 241 ----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------------------g------------- 282 (524)
..+..+..+.+.++ .+++++|||+||+.+...|..|+.. +
T Consensus 234 ~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 234 WPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 11122222333333 4668999999999999999988830 0
Q ss_pred ---CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEE----EeC-----CCCCHHHHHHHHhhcC
Q 009843 283 ---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRAG 350 (524)
Q Consensus 283 ---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI----~~~-----~p~s~~~y~Q~~GRag 350 (524)
..+.++|+||+.++|..+.+.|+.|.++|||||++++.|+|+|.-+.|| .|+ .+-+.-+|.|+.||||
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAG 391 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAG 391 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCC
Confidence 1467899999999999999999999999999999999999999666655 555 5668999999999999
Q ss_pred CCCCC--ceEEEEe
Q 009843 351 RDQLP--SKSLLYY 362 (524)
Q Consensus 351 R~G~~--~~~i~~~ 362 (524)
|-|-. |.++++.
T Consensus 392 RPg~d~~G~~~i~~ 405 (766)
T COG1204 392 RPGYDDYGEAIILA 405 (766)
T ss_pred CCCcCCCCcEEEEe
Confidence 99854 4455554
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=9.4e-31 Score=279.64 Aligned_cols=326 Identities=20% Similarity=0.200 Sum_probs=239.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++..+++|. .|++.|..+...+.+|+ ++.|+||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 45566788887 57888888888887776 99999999999999999853 366799999999999998888776
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEeccccccc---
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~~--- 172 (524)
+|+.+..+.+......+...+. .+++|+||-.++-.-+...+ ........+.++||||+|.+.-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~--------~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYA--------CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcC--------CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 5888888888877655443331 57888888765332222221 1223456699999999999852
Q ss_pred ------cC----C------------------CCHH------------HHHHHHH----------------------HHHh
Q 009843 173 ------WG----H------------------DFRP------------SYRKLSS----------------------LRNY 190 (524)
Q Consensus 173 ------~g----~------------------~fr~------------~~~~l~~----------------------l~~~ 190 (524)
-| . +|.- -...+.. ++..
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 01 0 1100 0000000 0000
Q ss_pred --C----------------------------------------------C----------------CCCEEEEeccCChh
Q 009843 191 --L----------------------------------------------P----------------DVPILALTATAAPK 206 (524)
Q Consensus 191 --~----------------------------------------------~----------------~~~ii~lSAT~~~~ 206 (524)
+ + -..+.+||+|+..+
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 0 0 01467888888643
Q ss_pred HHHHHHHHhCCCCCeEEeccCCCCcceEEEEe--eCchhhHHHHHHHHHH--hcCCccEEEEeCccccHHHHHHHHHhCC
Q 009843 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGG 282 (524)
Q Consensus 207 ~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~--~~~~~~~~~~l~~~l~--~~~~~~~IIf~~s~~~~e~l~~~L~~~g 282 (524)
...+....++. ++..+.++|........ .....+++..+.+.+. ...+.|+||||+|++.++.+++.|.+.|
T Consensus 354 -~~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g 429 (745)
T TIGR00963 354 -EEEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG 429 (745)
T ss_pred -HHHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 34444544443 45556666665443211 1123456777766663 3468899999999999999999999999
Q ss_pred CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCC-------ccEEEEeCCCCCHHHHHHHHhhcCCCCCC
Q 009843 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (524)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~-------v~~VI~~~~p~s~~~y~Q~~GRagR~G~~ 355 (524)
++...+||+ ..+|+..+..|..+...|+|||+++|+|+|++. .-+||+++.|.|...|.|+.||+||.|.+
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 999999998 778999999999999999999999999999998 45999999999999999999999999999
Q ss_pred ceEEEEeccccHH
Q 009843 356 SKSLLYYGMDDRR 368 (524)
Q Consensus 356 ~~~i~~~~~~d~~ 368 (524)
|.+..|++.+|.-
T Consensus 508 G~s~~~ls~eD~l 520 (745)
T TIGR00963 508 GSSRFFLSLEDNL 520 (745)
T ss_pred cceEEEEeccHHH
Confidence 9999999988753
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=9.8e-31 Score=281.22 Aligned_cols=304 Identities=18% Similarity=0.183 Sum_probs=204.9
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCce---eEecc
Q 009843 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIAG---EFLSS 110 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~-g--~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~-gi~~---~~~~~ 110 (524)
.+||+|++++.++.. | +..++++|||+|||++.+..+....+.+|||||+..|++||.+++.++ .+.. ..+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999999874 3 368999999999999987666666788999999999999999999985 3322 22222
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhh----HHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009843 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF----MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (524)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~----~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (524)
.. +.. . .....++++|+.++..... ............++++|+||||.+.. +.|+ .
T Consensus 335 ~~----k~~----~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr---~ 394 (732)
T TIGR00603 335 DA----KER----F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFR---R 394 (732)
T ss_pred Cc----ccc----c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHH---H
Confidence 11 000 0 0124577788876653211 01112222334589999999999853 2222 2
Q ss_pred HHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc--------CCCCcceEEEEeeC------------------
Q 009843 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKD------------------ 240 (524)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~--------~~~~~l~~~v~~~~------------------ 240 (524)
+...+.....++||||+...... +.....+--|.++..+ +-.+.-.+.+...-
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 33444555689999999754321 1111111223333211 11111111111100
Q ss_pred ---chhhHHHHHHHHHHhc--CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC-CCcEEEE
Q 009843 241 ---LLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVA 314 (524)
Q Consensus 241 ---~~~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VlVa 314 (524)
....++..+..+++.+ .+.++||||.+...++.++..| + +..+||+++..+|..++++|++| .+++||+
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 0123444554555543 6779999999999998888877 2 46689999999999999999975 8899999
Q ss_pred cccccccccCCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCceE-------EEEeccccH
Q 009843 315 TVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDR 367 (524)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~G~~~~~-------i~~~~~~d~ 367 (524)
|.++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.+++.+..
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999988 5999999999999999765553 666666644
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=1.3e-29 Score=263.74 Aligned_cols=323 Identities=20% Similarity=0.252 Sum_probs=253.3
Q ss_pred CCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHH
Q 009843 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (524)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~ 89 (524)
+++...++.+.+...++| +++..|++++..+... .+-++++.-|||||+++++.++ ..+..+...+||--
T Consensus 244 ~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEI 322 (677)
T COG1200 244 PLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEI 322 (677)
T ss_pred CCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHH
Confidence 355566666666666898 6999999999998754 3458999999999999886655 45889999999999
Q ss_pred HHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEe
Q 009843 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (524)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViD 165 (524)
|++|..+.+.+ +|+.+..+.+......+..+...+.+|. ++++++|+-++ .+.....++.++|||
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALi---------Qd~V~F~~LgLVIiD 391 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALI---------QDKVEFHNLGLVIID 391 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhh---------hcceeecceeEEEEe
Confidence 99998887665 6899999999999999999999999997 77777776544 233445568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCC-eEEeccCCCCcceEEEEeeCchh
Q 009843 166 EAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYKDLLD 243 (524)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~-~~~~~~~~~~~l~~~v~~~~~~~ 243 (524)
|-|+..- .+=..++++-. ..-++.|||||.|.... ....+--+. .+-..+..|..+.-.+.......
T Consensus 392 EQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~ 460 (677)
T COG1200 392 EQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHERRP 460 (677)
T ss_pred ccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccccHH
Confidence 9999532 22234556655 45699999999998765 444333333 33334566667766666555555
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCcccc--------HHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 244 DAYADLCSVLKANGDTCAIVYCLERTT--------CDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~s~~~--------~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
..++.+.+.+. .+.++.|.|+-+++ ++.+++.|+.. +..+..+||.|++.+++.++++|++|+++|||
T Consensus 461 ~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILV 538 (677)
T COG1200 461 EVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILV 538 (677)
T ss_pred HHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEE
Confidence 56666655555 56788999987654 45667777744 56799999999999999999999999999999
Q ss_pred EcccccccccCCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCceEEEEecccc
Q 009843 314 ATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (524)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d 366 (524)
||.+++.|||+||.+++|..+.- .-+++..|-.||+||.+..+.|+++|.+..
T Consensus 539 aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 539 ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999998888743 368889999999999999999999998775
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=2e-30 Score=274.57 Aligned_cols=292 Identities=21% Similarity=0.254 Sum_probs=212.6
Q ss_pred EEEcCCCChHHHHHHHHH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHHHHHHhhcCCCccc
Q 009843 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (524)
Q Consensus 57 lv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 132 (524)
++.+|||+|||.+|+..+ +..++++||++|+++|+.|+.+.|++ ++.....+++..+..++...+..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 468999999999986433 45678999999999999999999987 6888899999999888888888887775 67
Q ss_pred EEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhCCCCCEEEEeccCChhHHHH
Q 009843 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (524)
Q Consensus 133 ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~~~~~~ii~lSAT~~~~~~~~ 210 (524)
++++|+..+.. ....+++|||||+|+.+.|+.++ |.| +.+..++....+.|++++|||++.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 77777764432 23468999999999999887664 444 56777888889999999999998776554
Q ss_pred HHHHhCCCCCeEEec---cCCCCcceEEEEeeC-----chhhHHHHHHHHHHhcCCccEEEEeCcccc------------
Q 009843 211 VMESLCLQNPLVLKS---SFNRPNLFYEVRYKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTT------------ 270 (524)
Q Consensus 211 i~~~l~l~~~~~~~~---~~~~~~l~~~v~~~~-----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~------------ 270 (524)
+... .-....... ....|.+...-..+. .....++.+.+.++ .++++|||+|++..
T Consensus 147 ~~~g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 147 AKQK--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HhcC--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 3221 000001100 111122222111111 01122333333333 35689999877642
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCceEEEcCCCCHHHH--H
Q 009843 271 ------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR--S 298 (524)
Q Consensus 271 ------------------------------------------------~e~l~~~L~~~--g~~~~~~h~~l~~~~R--~ 298 (524)
++++++.|++. +.++..+|++++...+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 58888999887 7889999999987655 8
Q ss_pred HHHHHHhcCCCcEEEEcccccccccCCCccEEE--EeCC----CC------CHHHHHHHHhhcCCCCCCceEEEEe-ccc
Q 009843 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC--HFNI----PK------SMEAFYQESGRAGRDQLPSKSLLYY-GMD 365 (524)
Q Consensus 299 ~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI--~~~~----p~------s~~~y~Q~~GRagR~G~~~~~i~~~-~~~ 365 (524)
.+++.|.+|+.+|||+|++++.|+|+|+|++|+ +.|. |. ....|+|++||+||.+.+|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999986 4443 32 3577899999999999999988654 444
Q ss_pred c
Q 009843 366 D 366 (524)
Q Consensus 366 d 366 (524)
+
T Consensus 383 ~ 383 (505)
T TIGR00595 383 H 383 (505)
T ss_pred C
Confidence 4
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=275.52 Aligned_cols=314 Identities=26% Similarity=0.398 Sum_probs=208.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcCCcee---
Q 009843 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIAGE--- 106 (524)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~gi~~~--- 106 (524)
..-.+|++|.+.+..++ |+++++.+|||+|||+++...++.. .+++|+++|++-|+.||...+..++++..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 44579999999999999 9999999999999999887776643 78999999999999999988888886622
Q ss_pred EeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhc-cCCccEEEEeccccccccCCCCHHHHHHH
Q 009843 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHS-RGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (524)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~-~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (524)
.+++..+...+..++. ..+++++||.++-+ .|.+ ... ++.+.++||||||+-.. .|.|-.-.+.+
T Consensus 138 ~l~~~~~~~~r~~i~~-------s~~vff~TpQil~n-----dL~~~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVA-------SKRVFFRTPQILEN-----DLKSGLHDELSDFSLIVFDECHRTSK-NHPYNNIMREY 204 (746)
T ss_pred eccCccCCCchhhhhc-------ccceEEeChHhhhh-----hcccccccccceEEEEEEcccccccc-cccHHHHHHHH
Confidence 2222222222222221 25777788876644 2221 111 35689999999999764 23332222222
Q ss_pred HHHHHhCCCCCEEEEeccCChhHHH--HHHHHhCCC----C---------------CeE--Ee-----------------
Q 009843 185 SSLRNYLPDVPILALTATAAPKVQK--DVMESLCLQ----N---------------PLV--LK----------------- 224 (524)
Q Consensus 185 ~~l~~~~~~~~ii~lSAT~~~~~~~--~i~~~l~l~----~---------------~~~--~~----------------- 224 (524)
..+.. .+.++++||||+...... .++..|... . +.. +.
T Consensus 205 l~~k~--~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 205 LDLKN--QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred HHhhh--ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 22222 234999999999753211 011111100 0 000 00
Q ss_pred ---------------c-cCCC----------Ccc----e------------------EEEE----------------ee-
Q 009843 225 ---------------S-SFNR----------PNL----F------------------YEVR----------------YK- 239 (524)
Q Consensus 225 ---------------~-~~~~----------~~l----~------------------~~v~----------------~~- 239 (524)
. .+.. ++. + ..++ .+
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 0 0000 000 0 0000 00
Q ss_pred ----------------------------CchhhHHHHHHHHHHh----cCCccEEEEeCccccHHHHHHHHHh---CCCc
Q 009843 240 ----------------------------DLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSA---GGIS 284 (524)
Q Consensus 240 ----------------------------~~~~~~~~~l~~~l~~----~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~ 284 (524)
+....+++.+.+++.. .+..++|||+.+|..|..|...|.+ .|++
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir 442 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIK 442 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccc
Confidence 0001233444444432 3567899999999999999999873 2443
Q ss_pred eEE--------EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 009843 285 CAA--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (524)
Q Consensus 285 ~~~--------~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~ 356 (524)
... ...+|+++++.+++++|++|+++|||||+++++|+|++.|+.||-||...|+-..+||.|| ||. +.|
T Consensus 443 ~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 443 AEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred cceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCC
Confidence 332 3358999999999999999999999999999999999999999999999999999999999 998 679
Q ss_pred eEEEEecccc
Q 009843 357 KSLLYYGMDD 366 (524)
Q Consensus 357 ~~i~~~~~~d 366 (524)
.|+++++..+
T Consensus 521 ~~vll~t~~~ 530 (746)
T KOG0354|consen 521 KCVLLTTGSE 530 (746)
T ss_pred eEEEEEcchh
Confidence 9999988443
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=2.1e-29 Score=279.69 Aligned_cols=317 Identities=17% Similarity=0.171 Sum_probs=216.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHh---cC--CCeEEEeCcHHHHHHHHHHHHH-HcCCceeEec
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l---~~--~~~~lvl~P~~~L~~q~~~~l~-~~gi~~~~~~ 109 (524)
.|.|+|.+++..++.. ..+++...+|.|||+-+.+.+- .. .+++|||||. +|..||..++. ++++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5889999998877654 3688899999999987654432 22 4689999997 89999999885 5787766665
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
........ ..-...-...++++++.+.+.. +.....+.. ..++++||||||++..-...--..|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44321110 0000111125677777776654 333333322 35899999999998621111122366666665
Q ss_pred HhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeE----------------------------------------------
Q 009843 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLV---------------------------------------------- 222 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~---------------------------------------------- 222 (524)
... ..+++|||||...-..++...+.+-+|..
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 443 24899999985422222112111111111
Q ss_pred ------------------------------------Eec------cCCCCcc-eEEEEe---------------------
Q 009843 223 ------------------------------------LKS------SFNRPNL-FYEVRY--------------------- 238 (524)
Q Consensus 223 ------------------------------------~~~------~~~~~~l-~~~v~~--------------------- 238 (524)
++. .+....+ .+.+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 110 0000000 000000
Q ss_pred -------------eCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHH-hCCCceEEEcCCCCHHHHHHHHHHH
Q 009843 239 -------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (524)
Q Consensus 239 -------------~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f 304 (524)
....+.|++.|.++++...+.++||||+++..+..+++.|+ ..|+.+..+||+|+..+|..+++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 00012355667888887778899999999999999999995 5699999999999999999999999
Q ss_pred hcC--CCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 305 ~~g--~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
+++ ..+|||||+++++|+|++.+++||+||+|++++.|.||+||+||.|+.+.+.+++...
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 974 6999999999999999999999999999999999999999999999998876665433
No 80
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.6e-31 Score=240.87 Aligned_cols=299 Identities=17% Similarity=0.286 Sum_probs=217.4
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (524)
.+++|.++.+.+++++++-. .||.+|.+.|.++|+...-|.|++++|..|.|||.+|.+..|++ .-.++|+|.
T Consensus 40 hssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmch 118 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH 118 (387)
T ss_pred eccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEec
Confidence 35788899999999999998 89999999999999999999999999999999999999988876 235899999
Q ss_pred HHHHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCc
Q 009843 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (524)
||+|+-|+..+..++ +++.....++.......+.... .|. .+++||+++..|.+ ..+.+.+
T Consensus 119 trelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~Ph--------ivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 119 TRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPH--------IVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred cHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCe--------EEEcCcHHHHHHHHhccCchhhc
Confidence 999999998887764 4566666665554433332221 222 26778887777744 4446668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcc----e
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNL----F 233 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l----~ 233 (524)
+.+|+|||+.+.+| -|.|. .+..+.+.-| ..|++.+|||.+.+.+.-..+. +.+|..+-. ....-.+ .
T Consensus 187 khFvlDEcdkmle~-lDMrR---DvQEifr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmEi~vDdE~KLtLHGLqQ 260 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQ-LDMRR---DVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPMEIFVDDEAKLTLHGLQQ 260 (387)
T ss_pred ceeehhhHHHHHHH-HHHHH---HHHHHhhcCcccceeeeeeeecchhhHHHHHhh--hcCchhhhccchhhhhhhhHHH
Confidence 89999999999875 34553 4455555555 6789999999999876643333 345443221 1111111 1
Q ss_pred EEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
|.+..++ ..+-..+.++|....-..++||+.|... | + | +.+ +|
T Consensus 261 ~YvkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~v 303 (387)
T KOG0329|consen 261 YYVKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LV 303 (387)
T ss_pred HHHhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hH
Confidence 1122222 2333344444444444579999987654 1 0 2 223 89
Q ss_pred EcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
||+.||+|+|+..|+.|++||+|.+..+|+||+|||||.|..|.++.|.+..+.
T Consensus 304 at~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 304 ATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred HhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 999999999999999999999999999999999999999999999999986643
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2e-28 Score=261.19 Aligned_cols=334 Identities=19% Similarity=0.233 Sum_probs=237.3
Q ss_pred HHHHH-HHHcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHhcC-------------CCeEEEeCcHHHH
Q 009843 26 LVKLL-RWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVLVVSPLIAL 90 (524)
Q Consensus 26 ~~~~l-~~~fg~~~~r~~Q~~~i~~~l~-g~d~lv~apTGsGKTl~~~lp~l~~-------------~~~~lvl~P~~~L 90 (524)
+.... +.+|+|..|+..|.++++.+.. +.+++++||||+|||-.|.|.+|.. .-++|+|+|+++|
T Consensus 97 ld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKAL 176 (1230)
T KOG0952|consen 97 LDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKAL 176 (1230)
T ss_pred cchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHH
Confidence 33344 4789999999999999998775 5699999999999999999887742 4589999999999
Q ss_pred HHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccc--ccChhhHHHHHhhhccCCccEEEE
Q 009843 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL--TATPGFMSKLKKIHSRGLLNLVAI 164 (524)
Q Consensus 91 ~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~--v~t~~~~~~l~~~~~~~~l~~iVi 164 (524)
+...++.+.+ +|+.+..+++........ +. ..++++.|||. +.|...... ..-.+.++++||
T Consensus 177 a~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~LviI 244 (1230)
T KOG0952|consen 177 AAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSVGD---SALFSLVRLVII 244 (1230)
T ss_pred HHHHHHHHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeeccc---hhhhhheeeEEe
Confidence 9998887765 588888888766543322 22 27899999994 334322211 111234899999
Q ss_pred eccccccc-cCCCCHHHHHHHHHHHH-hCCCCCEEEEeccCChhHHHHHHHHhCCCCC---eEEeccCCCCcceEEEE--
Q 009843 165 DEAHCISS-WGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVR-- 237 (524)
Q Consensus 165 DEaH~i~~-~g~~fr~~~~~l~~l~~-~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~---~~~~~~~~~~~l~~~v~-- 237 (524)
||+|.+-+ .|.-......+...+.+ ....+++++||||+++- .|+..+|+...+ ..+...+..-.+...+.
T Consensus 245 DEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~ 322 (1230)
T KOG0952|consen 245 DEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGI 322 (1230)
T ss_pred eeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEee
Confidence 99999854 55332222222222222 33478899999999864 678888887522 12333333333332221
Q ss_pred -ee-------CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCC-----------------------CceE
Q 009843 238 -YK-------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----------------------ISCA 286 (524)
Q Consensus 238 -~~-------~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g-----------------------~~~~ 286 (524)
.+ ...+..++.+.+++++ +.+++|||.+|+.+.+.|+.|.+.+ ....
T Consensus 323 k~~~~~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~ 400 (1230)
T KOG0952|consen 323 KGKKNRQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMG 400 (1230)
T ss_pred ecccchhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhh
Confidence 11 0112344555566554 5689999999999999999887531 1457
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCC-----C------CHHHHHHHHhhcCCCC--
Q 009843 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----K------SMEAFYQESGRAGRDQ-- 353 (524)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p-----~------s~~~y~Q~~GRagR~G-- 353 (524)
.+|+||...+|.-+.+.|+.|.++|++||..++.|+|+|+- .||..+-+ + +.-.-+|..|||||-+
T Consensus 401 iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 401 IHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred hcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 89999999999999999999999999999999999999964 45544433 2 5677899999999964
Q ss_pred CCceEEEEeccccHHHHHHHHHh
Q 009843 354 LPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 354 ~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
..|.+++..+.+-......++..
T Consensus 480 ~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred CCceEEEEecccHHHHHHHHHcC
Confidence 56888888888877777777654
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=9.1e-29 Score=258.79 Aligned_cols=295 Identities=19% Similarity=0.256 Sum_probs=205.1
Q ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCce---eEe
Q 009843 36 HAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG---EFL 108 (524)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~----g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~---~~~ 108 (524)
...+|++|++|+.++.. ++..++++|||+|||++++..+-.....+|||+|+.+|+.|+.+.+....... ..+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~ 113 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY 113 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCcccccee
Confidence 34699999999999998 88999999999999999887777777779999999999999988877743321 111
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
.+... ...+ ..+.++|...+.... .......+.+++||+||||++.... |+.+..
T Consensus 114 ~~~~~------------~~~~-~~i~vat~qtl~~~~----~l~~~~~~~~~liI~DE~Hh~~a~~------~~~~~~-- 168 (442)
T COG1061 114 GGGEK------------ELEP-AKVTVATVQTLARRQ----LLDEFLGNEFGLIIFDEVHHLPAPS------YRRILE-- 168 (442)
T ss_pred cCcee------------ccCC-CcEEEEEhHHHhhhh----hhhhhcccccCEEEEEccccCCcHH------HHHHHH--
Confidence 11110 0011 236666655554432 1222223358999999999987632 333333
Q ss_pred HhCCCCC-EEEEeccCChhHHHHHHHHhCCCCCeEEec--------cCCCCcceEEEEeeCch-----------------
Q 009843 189 NYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKS--------SFNRPNLFYEVRYKDLL----------------- 242 (524)
Q Consensus 189 ~~~~~~~-ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~--------~~~~~~l~~~v~~~~~~----------------- 242 (524)
.+.... +++||||+.......+.....+..+.++.. .+..|...+.+......
T Consensus 169 -~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 169 -LLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred -hhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 333333 999999987554222222222222344332 22222222222221000
Q ss_pred -------------------hhHHHHHHHHHHhc-CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHH
Q 009843 243 -------------------DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302 (524)
Q Consensus 243 -------------------~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 302 (524)
..+...+...+..+ .+.+++||+.+...++.++..+...|+ +..+.+..+..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 11222233333333 367899999999999999999998888 899999999999999999
Q ss_pred HHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCC-CCCCce
Q 009843 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (524)
Q Consensus 303 ~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR-~G~~~~ 357 (524)
.|+.|++++||++.++.+|+|+|++..+|......|...|+||+||.-| ...++.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999 433443
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=5.3e-29 Score=280.10 Aligned_cols=299 Identities=18% Similarity=0.228 Sum_probs=199.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc----HHHHHHHHHHHHHH-cCCceeEecc
Q 009843 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP----LIALMENQVIGLKE-KGIAGEFLSS 110 (524)
Q Consensus 42 ~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P----~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (524)
.-.++++++.+++.+++.|+||||||. ++|.+.. .+.+++.-| .++|+.+..+++.. .|-.+.+-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 344566666667778888999999998 7885432 234444557 56888888877765 4433322110
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHH
Q 009843 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRN 189 (524)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~ 189 (524)
.. ... ....+|+|+||.++. ..+........+++|||||||. ..+ .||... .+..+..
T Consensus 156 f~---------~~~---s~~t~I~v~TpG~LL-----~~l~~d~~Ls~~~~IIIDEAHERsLn--~DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 156 FN---------DQV---SDNTMVKLMTDGILL-----AEIQQDRLLMQYDTIIIDEAHERSLN--IDFILG--YLKELLP 214 (1294)
T ss_pred Cc---------ccc---CCCCCEEEEChHHHH-----HHHhcCCccccCcEEEecCccccccc--cchHHH--HHHHhhh
Confidence 00 000 123567666665442 2223333466799999999995 554 345532 2444555
Q ss_pred hCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCC-cceEEEEeeCc---hhhHHHHHHHHHH---hcCCccEE
Q 009843 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAI 262 (524)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~I 262 (524)
..|+.++|+||||++.+ .+.+.+ ...|.+.......| .+.|....... ..+.+..+.+.+. ..+.+.+|
T Consensus 215 ~rpdlKvILmSATid~e---~fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 215 RRPDLKVIITSATIDPE---RFSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred cCCCceEEEeeCCCCHH---HHHHHc-CCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 55778999999999764 333333 23454333221111 12222111110 1223334433322 34557899
Q ss_pred EEeCccccHHHHHHHHHhCCCc---eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC----
Q 009843 263 VYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (524)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~---- 335 (524)
||++++.+++.+++.|.+.+++ +..+||+|+.++|..+++. .|..+|||||+++++|||+|+|++||++++
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999988764 6789999999999999876 578999999999999999999999999863
Q ss_pred -----------C---CCHHHHHHHHhhcCCCCCCceEEEEeccccHHHH
Q 009843 336 -----------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (524)
Q Consensus 336 -----------p---~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~ 370 (524)
| .|.++|.||+|||||. .+|.|+.+|+.+|...+
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 3 4678999999999999 68999999998876543
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=8.7e-28 Score=263.02 Aligned_cols=328 Identities=20% Similarity=0.195 Sum_probs=262.7
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHHHH---HHhcCCCeEEE
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQI---PALAKPGIVLV 83 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~----g--~d~lv~apTGsGKTl~~~l---p~l~~~~~~lv 83 (524)
....-..+++.......+...|+| .-|+-|..||+.+.+ + .|-++++.-|.|||-+++- .|+..++.|.|
T Consensus 570 ~~~~G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAv 648 (1139)
T COG1197 570 QAKKGFAFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAV 648 (1139)
T ss_pred hhccCCCCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEE
Confidence 344445577888888889998999 589999999999874 2 5889999999999988764 45567899999
Q ss_pred eCcHHHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCc
Q 009843 84 VSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (524)
Q Consensus 84 l~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l 159 (524)
++||--|++|..+.+++ +.+.+..+..-.+..+...+...+..|. ++|+++|+-++.+. .....+
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~kd---------v~FkdL 717 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSKD---------VKFKDL 717 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCCC---------cEEecC
Confidence 99999999999988876 5788888999999999999999999997 89998888766542 234458
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcceEEEEe
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRY 238 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l~~~v~~ 238 (524)
+++||||-|+..= ..-..+++...++-++-|||||-|.... ....++++-.++.. +.+|-.+.-.+..
T Consensus 718 GLlIIDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~ 786 (1139)
T COG1197 718 GLLIIDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSE 786 (1139)
T ss_pred CeEEEechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEec
Confidence 9999999999642 2233444445688999999999999877 66667777655544 4555555555554
Q ss_pred eCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
.+. .-.-+.|...+. .++++....|.+++.+++++.|++. ..++.+-||.|++.+-+.++.+|.+|+.+|||||.
T Consensus 787 ~d~-~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT 863 (1139)
T COG1197 787 YDD-LLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT 863 (1139)
T ss_pred CCh-HHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee
Confidence 432 122233333332 3567888889999999999999987 56789999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEecccc
Q 009843 317 AFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~~~~i~~~~~~d 366 (524)
+.+.|||+|+++.+|..+.-+ -+++.||..||+||.++.+.|+++|.+..
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 999999999999988555432 58999999999999999999999998763
No 85
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.9e-27 Score=253.33 Aligned_cols=325 Identities=21% Similarity=0.218 Sum_probs=237.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++++|. .|++.|.-..-.+.+|+ ++.|.||.|||++..+|++. .+..+-|++|+--|+.+-.+.+..
T Consensus 69 vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 45667788887 58888988777777776 99999999999999998875 477899999999999998877655
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-c--
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-S-- 172 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~-- 172 (524)
+|+.+..+.+..+..++...+. .+|.|+|.--++-.-+...+ .+......+.+.||||+|.++ +
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 7999999988888777766553 67888887655433322222 112223457788888888874 1
Q ss_pred --------cCCCCHHHHHHH------------------------------------------------------------
Q 009843 173 --------WGHDFRPSYRKL------------------------------------------------------------ 184 (524)
Q Consensus 173 --------~g~~fr~~~~~l------------------------------------------------------------ 184 (524)
........|..+
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 000000000000
Q ss_pred -HHH----HHh---------------------------------------------C---C----------------CCC
Q 009843 185 -SSL----RNY---------------------------------------------L---P----------------DVP 195 (524)
Q Consensus 185 -~~l----~~~---------------------------------------------~---~----------------~~~ 195 (524)
..+ +.. + | -..
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 000 000 0 0 014
Q ss_pred EEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCccccH
Q 009843 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (524)
Q Consensus 196 ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~ 271 (524)
+.+||+|+..+ ...+....++. ++..+.++|....... .......++..+.+.+.. ..+.|+||||+|+..+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNME---VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 66788887543 34444444443 4455667776554322 112235677888888854 3788999999999999
Q ss_pred HHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCC---Ccc-----EEEEeCCCCCHHHHH
Q 009843 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (524)
Q Consensus 272 e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p---~v~-----~VI~~~~p~s~~~y~ 343 (524)
+.+++.|.+.|++...+||++...++..+.+.++.|. |+|||+++|+|.|++ +|. +||+++.|.|.+.|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888888877776 999999999999994 899 999999999999999
Q ss_pred HHHhhcCCCCCCceEEEEeccccH
Q 009843 344 QESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 344 Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
|+.||+||.|.+|.+..|++.+|.
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999998864
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=250.47 Aligned_cols=325 Identities=21% Similarity=0.261 Sum_probs=227.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
...+...|+| ++-.+|++||-++..|.+++|.|+|.+|||+++-.++. .+..+++|-+|.++|.+|.++.++...-
T Consensus 287 Vpe~a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 287 VPEMALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred chhHHhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc
Confidence 3344445787 68899999999999999999999999999998654432 2367999999999999999999988433
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (524)
....+++.. +-+|....+++|.|++.+.-+ ....-.+.+++||+||+|-+.+-.++ ..
T Consensus 366 DvgLlTGDv-------------qinPeAsCLIMTTEILRsMLY----rgadliRDvE~VIFDEVHYiND~eRG-----vV 423 (1248)
T KOG0947|consen 366 DVGLLTGDV-------------QINPEASCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYINDVERG-----VV 423 (1248)
T ss_pred ccceeecce-------------eeCCCcceEeehHHHHHHHHh----cccchhhccceEEEeeeeeccccccc-----cc
Confidence 333333322 234557788888886643111 11111234889999999999773322 34
Q ss_pred HHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCC-CCCeE-EeccCCCCcc--eEEEEeeCch----------------
Q 009843 184 LSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL-QNPLV-LKSSFNRPNL--FYEVRYKDLL---------------- 242 (524)
Q Consensus 184 l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l-~~~~~-~~~~~~~~~l--~~~v~~~~~~---------------- 242 (524)
+.++.-++| .+.+|+||||.++... +..|.+- +...+ +.++..||.- +|-...+...
T Consensus 424 WEEViIMlP~HV~~IlLSATVPN~~E--FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~ 501 (1248)
T KOG0947|consen 424 WEEVIIMLPRHVNFILLSATVPNTLE--FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKD 501 (1248)
T ss_pred ceeeeeeccccceEEEEeccCCChHH--HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchh
Confidence 556666777 7899999999987642 2444432 22222 2223333321 0000000000
Q ss_pred -----------------------------------------------h---hHHHHHHHHHHhcCCccEEEEeCccccHH
Q 009843 243 -----------------------------------------------D---DAYADLCSVLKANGDTCAIVYCLERTTCD 272 (524)
Q Consensus 243 -----------------------------------------------~---~~~~~l~~~l~~~~~~~~IIf~~s~~~~e 272 (524)
. ..+-.+...|+...--|+||||-|++.|+
T Consensus 502 a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCd 581 (1248)
T KOG0947|consen 502 AKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCD 581 (1248)
T ss_pred hhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHH
Confidence 0 12445666666666678999999999999
Q ss_pred HHHHHHHhCCC---------------------------------------ceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 273 ELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 273 ~l~~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
+.++.|....+ .++++|||+-+--++.+...|..|-++||+
T Consensus 582 e~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 582 EYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 99999976432 468899999999999999999999999999
Q ss_pred EcccccccccCCCccEEEEeCCCC---------CHHHHHHHHhhcCCCCCC--ceEEEEecc--ccHHHHHHHHHhc
Q 009843 314 ATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQLP--SKSLLYYGM--DDRRRMEFILSKN 377 (524)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR~G~~--~~~i~~~~~--~d~~~~~~l~~~~ 377 (524)
||..|+||||.| .|.||+-++.+ .+-+|+|++|||||.|.. |.++++... .+...++.++-..
T Consensus 662 ATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 662 ATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGG 737 (1248)
T ss_pred ehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCC
Confidence 999999999999 67777666654 688999999999999975 455555433 3556666666443
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=4.6e-27 Score=265.48 Aligned_cols=300 Identities=18% Similarity=0.201 Sum_probs=196.2
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHH
Q 009843 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (524)
Q Consensus 44 ~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (524)
.+++.++..++.+++.|+||||||. ++|.+.. .+.+++.-|.+--+.....++.+ +|.+.....+.....+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 3566666667778999999999997 6775432 34566667877666665555444 4554332222211100
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHhCCCCC
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVP 195 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~ 195 (524)
. -. ....+|.|+|+.++. ..+........+++|||||||. ..+ .||--. .+..+....|+.+
T Consensus 151 ~------~~--s~~T~I~~~TdGiLL-----r~l~~d~~L~~~~~IIIDEaHERsL~--~D~LL~--lLk~il~~rpdLK 213 (1283)
T TIGR01967 151 D------QV--SSNTLVKLMTDGILL-----AETQQDRFLSRYDTIIIDEAHERSLN--IDFLLG--YLKQLLPRRPDLK 213 (1283)
T ss_pred c------cc--CCCceeeeccccHHH-----HHhhhCcccccCcEEEEcCcchhhcc--chhHHH--HHHHHHhhCCCCe
Confidence 0 00 123567666665442 2233333456799999999995 544 234322 2445555667889
Q ss_pred EEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCC-cceEEEEeeCc---hhhHHHHHHHHHH---hcCCccEEEEeCcc
Q 009843 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLER 268 (524)
Q Consensus 196 ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~IIf~~s~ 268 (524)
+|+||||+... .+.+.++ ..|.+......-| .+.|....... ..+....+...+. ....+.+|||++++
T Consensus 214 lIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99999999753 3344432 3444333221111 12222111100 1123333333332 23456899999999
Q ss_pred ccHHHHHHHHHhCC---CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCC--------
Q 009843 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (524)
Q Consensus 269 ~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~-------- 337 (524)
.+++.+++.|.+.+ +.+..+||+|+.++|..+++.+ +..+|||||++++.|||+|+|++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999998864 4588999999999999886543 3479999999999999999999999999543
Q ss_pred ----------CHHHHHHHHhhcCCCCCCceEEEEeccccHHH
Q 009843 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (524)
Q Consensus 338 ----------s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~ 369 (524)
|.++|.||+|||||.| +|.|+.+|+.++...
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 7789999999999998 999999999877644
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.6e-26 Score=245.81 Aligned_cols=353 Identities=21% Similarity=0.239 Sum_probs=240.2
Q ss_pred cccccccccccCCCCChhHHHHHHHH-HHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcC------
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLR-WHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK------ 77 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~fg~~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~------ 77 (524)
.|+.+..++.+.+.+-...++..+-+ ..||..+|...|..+..+++.+ .+++++||||+|||.++++-+|..
T Consensus 276 VPa~~~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r 355 (1674)
T KOG0951|consen 276 VPAPSYFPFHKEEKLVKISELPKWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLR 355 (1674)
T ss_pred CCCCCCCCCCccceeEeecCCcchhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccc
Confidence 45555445544444433333333333 3458899999999999999877 579999999999999999988853
Q ss_pred --------CCeEEEeCcHHHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccc--ccC
Q 009843 78 --------PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL--TAT 143 (524)
Q Consensus 78 --------~~~~lvl~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~--v~t 143 (524)
..++++++|..+|++.++..+.+ +||.+.-+++........ +. ...++++|||. +.|
T Consensus 356 ~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q-----ie----eTqVIV~TPEK~DiIT 426 (1674)
T KOG0951|consen 356 EDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ-----IE----ETQVIVTTPEKWDIIT 426 (1674)
T ss_pred cccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh-----hh----cceeEEeccchhhhhh
Confidence 45799999999999999986544 788888777665432211 11 26788888883 222
Q ss_pred -hhhHHHHHhhhccCCccEEEEeccccccc-cCCCCHHHH-HHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCC
Q 009843 144 -PGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP 220 (524)
Q Consensus 144 -~~~~~~l~~~~~~~~l~~iViDEaH~i~~-~g~~fr~~~-~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~ 220 (524)
.+--.... ..++++||||.|.+-+ .|.-...-. +..........+..+++||||+++- .|+...+....+
T Consensus 427 Rk~gdraY~-----qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~ 499 (1674)
T KOG0951|consen 427 RKSGDRAYE-----QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPE 499 (1674)
T ss_pred cccCchhHH-----HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcc
Confidence 21111111 1278899999999833 442211000 0111111122377899999999874 567777776655
Q ss_pred eEEe--ccCCCCcceEEEEeeCc--hhhHHHH-----HHHHHHhcCCccEEEEeCccccHHHHHHHHHh-----------
Q 009843 221 LVLK--SSFNRPNLFYEVRYKDL--LDDAYAD-----LCSVLKANGDTCAIVYCLERTTCDELSAYLSA----------- 280 (524)
Q Consensus 221 ~~~~--~~~~~~~l~~~v~~~~~--~~~~~~~-----l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~----------- 280 (524)
..+. .++..-.+.+++.-... ...+... .-+.++..++.++|||+.||+++-+.|+.++.
T Consensus 500 glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~f 579 (1674)
T KOG0951|consen 500 GLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRF 579 (1674)
T ss_pred cccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHH
Confidence 4433 35655566665543211 1112222 22345556778999999999999888887762
Q ss_pred --------------------------CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEE---
Q 009843 281 --------------------------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC--- 331 (524)
Q Consensus 281 --------------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI--- 331 (524)
..++.+.+|+||+..+|..+.+.|.+|+++|+|+|-.++.|+|.|.-.++|
T Consensus 580 mre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgt 659 (1674)
T KOG0951|consen 580 MREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGT 659 (1674)
T ss_pred HhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCc
Confidence 013678999999999999999999999999999999999999999777666
Q ss_pred -EeC------CCCCHHHHHHHHhhcCCCCC--CceEEEEeccccHHHHHHHH
Q 009843 332 -HFN------IPKSMEAFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFIL 374 (524)
Q Consensus 332 -~~~------~p~s~~~y~Q~~GRagR~G~--~~~~i~~~~~~d~~~~~~l~ 374 (524)
-|+ .+.|+.+-+|+.|||||.+- .|..++....+++.....++
T Consensus 660 qvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 660 QVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred cccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhh
Confidence 333 24489999999999999764 46677777777766555444
No 89
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.4e-26 Score=251.74 Aligned_cols=321 Identities=23% Similarity=0.233 Sum_probs=217.0
Q ss_pred HHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009843 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (524)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (524)
+.+|| ++-++|++++..+.+|.+|+|+||||+|||++.-.+ ++.++.++++.+|.+||.+|....|........
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~-- 190 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVA-- 190 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhh--
Confidence 34788 689999999999999999999999999999885433 455688899999999999999999877432220
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
..-.+..+-.+-+++..+++.|.|++.+-.+ ........+..||+||+|++.+...+ ..+....
T Consensus 191 -------~~vGL~TGDv~IN~~A~clvMTTEILRnMly----rg~~~~~~i~~ViFDEvHyi~D~eRG-----~VWEE~I 254 (1041)
T COG4581 191 -------DMVGLMTGDVSINPDAPCLVMTTEILRNMLY----RGSESLRDIEWVVFDEVHYIGDRERG-----VVWEEVI 254 (1041)
T ss_pred -------hhccceecceeeCCCCceEEeeHHHHHHHhc----cCcccccccceEEEEeeeeccccccc-----hhHHHHH
Confidence 0000111112223446666666665543221 11223445899999999999885444 4566667
Q ss_pred HhCC-CCCEEEEeccCChhHHHHHHHHhC--CCCCeEEeccCCCCc-ceEEEEee---------Cch---hh---HH---
Q 009843 189 NYLP-DVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRPN-LFYEVRYK---------DLL---DD---AY--- 246 (524)
Q Consensus 189 ~~~~-~~~ii~lSAT~~~~~~~~i~~~l~--l~~~~~~~~~~~~~~-l~~~v~~~---------~~~---~~---~~--- 246 (524)
-.+| .+++++||||.++...- ..|++ -..|..+..+..||. +.+.+... ... .. ..
T Consensus 255 i~lP~~v~~v~LSATv~N~~EF--~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEEF--AEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHHH--HHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 7778 57999999999876433 33332 244555544444443 22111110 000 00 00
Q ss_pred -----------------------------------HHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC----------
Q 009843 247 -----------------------------------ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------- 281 (524)
Q Consensus 247 -----------------------------------~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------- 281 (524)
-.+...+.....-++|+|+-|++.|+..+..+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 11333333344568999999999999888766521
Q ss_pred ------------------CC-------------ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEE
Q 009843 282 ------------------GI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (524)
Q Consensus 282 ------------------g~-------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~V 330 (524)
++ .++++|+||-+..|..+.+.|..|-++|++||.++++|+|.| .+.|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artv 491 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTV 491 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccce
Confidence 11 246899999999999999999999999999999999999999 6666
Q ss_pred EEeCCC---------CCHHHHHHHHhhcCCCCCC--ceEEEEeccc--cHHHHHHHH
Q 009843 331 CHFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLYYGMD--DRRRMEFIL 374 (524)
Q Consensus 331 I~~~~p---------~s~~~y~Q~~GRagR~G~~--~~~i~~~~~~--d~~~~~~l~ 374 (524)
+...+- -+..+|.|..|||||.|.. |.+++...+. +......+.
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~ 548 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLA 548 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhh
Confidence 655543 3899999999999999975 5666664333 344444444
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.7e-25 Score=240.85 Aligned_cols=324 Identities=21% Similarity=0.204 Sum_probs=238.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++++|. .+++.|.-..-.+.+|+ ++.|+||+|||+++.+|++. .+..+-|++|+..|+.|..+.+..
T Consensus 70 vrEa~~R~lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 34566677787 57788887777777775 99999999999999999963 355688999999999998888765
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEeccccccc---
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~~--- 172 (524)
+|+.+..+.+..+...+...+. .+|+|+||--++-.-+...+ ........+.++||||||.++=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 5899999998888877665532 67999998766432222222 1112345688999999999851
Q ss_pred --------cCC--------------------CC-----------------------------HHHHHHH-HH----HHHh
Q 009843 173 --------WGH--------------------DF-----------------------------RPSYRKL-SS----LRNY 190 (524)
Q Consensus 173 --------~g~--------------------~f-----------------------------r~~~~~l-~~----l~~~ 190 (524)
... +| .+....+ .. ++..
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 000 00 0000000 00 0000
Q ss_pred ---------------------------------------------C---C----------------CCCEEEEeccCChh
Q 009843 191 ---------------------------------------------L---P----------------DVPILALTATAAPK 206 (524)
Q Consensus 191 ---------------------------------------------~---~----------------~~~ii~lSAT~~~~ 206 (524)
+ + -..+.+||+|+..+
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 0 0 01467888888644
Q ss_pred HHHHHHHHhCCCCCeEEeccCCCCcceEEE---EeeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhC
Q 009843 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (524)
Q Consensus 207 ~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (524)
...+....++ .++..+.++|...... .+. ...+++..+.+.+.+ ..+.|+||||+|++.++.+++.|.+.
T Consensus 379 -~~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 379 -AEEFREIYNL---DVVVIPTNRPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred -HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3444554444 3455566777665442 222 235678888888865 56789999999999999999999999
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCc----------------------------------
Q 009843 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------- 327 (524)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v---------------------------------- 327 (524)
|+++..+||+ ..+|+..+..|..+...|+|||+++|+|+|++--
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 9999999996 7789999999999999999999999999998632
Q ss_pred ----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 328 ----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 328 ----~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
=+||....|.|..---|-.||+||.|.||.+..|.+.+|.
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2799999999999999999999999999999999998875
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=4.4e-25 Score=243.98 Aligned_cols=307 Identities=14% Similarity=0.123 Sum_probs=190.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---C--CCeEEEeCcHHHHHHHHHHHHHH-----cC-
Q 009843 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~--~~~~lvl~P~~~L~~q~~~~l~~-----~g- 102 (524)
|+..+|||.|..+......+.-+++.+|||+|||.+++..+.. . ...++|..||++++++..+++++ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 5455899999988554334566899999999999998766542 2 35899999999999999998864 22
Q ss_pred CceeEeccCCCHHHH-HHHH----------------HHhhcCCCcccEEEeCcccccChh-hHHHHH-------hhhccC
Q 009843 103 IAGEFLSSTQTMQVK-TKIY----------------EDLDSGKPSLRLLYVTPELTATPG-FMSKLK-------KIHSRG 157 (524)
Q Consensus 103 i~~~~~~~~~~~~~~-~~~~----------------~~l~~~~~~~~ll~~tpe~v~t~~-~~~~l~-------~~~~~~ 157 (524)
......++....... .... ..+... .-+-...+|..|+|.. ++.... +....
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L- 438 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQ--SNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL- 438 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhh--hhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-
Confidence 234444443321110 0000 001100 0011122444455532 111111 11111
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCCCEEEEeccCChhHHHHHHHHhCCCC--------CeEEe---
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQN--------PLVLK--- 224 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~--~~~~ii~lSAT~~~~~~~~i~~~l~l~~--------~~~~~--- 224 (524)
.-++|||||+|.+..+. . ..|..+.+.. .+.++|+||||+++..++.+...++... |.+..
T Consensus 439 a~svvIiDEVHAyD~ym---~---~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYM---Y---GLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHH---H---HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 13589999999964311 1 1222222221 3688999999999988887776543221 11100
Q ss_pred -------ccCC----CCcceEEEEee--C---chhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCC---Cce
Q 009843 225 -------SSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISC 285 (524)
Q Consensus 225 -------~~~~----~~~l~~~v~~~--~---~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---~~~ 285 (524)
.... .......+... . .....++.+.+.+ ..+.+++|||||++.|+++++.|++.+ ..+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 0000 00111111111 1 1112233333333 346789999999999999999999765 679
Q ss_pred EEEcCCCCHHHHH----HHHHHH-hcCC---CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC
Q 009843 286 AAYHAGLNDKARS----SVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (524)
Q Consensus 286 ~~~h~~l~~~~R~----~~~~~f-~~g~---~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (524)
..+||+++..+|. ++++.| ++|+ ..|||||++++.|+|+ +++++|....| ++.++||+||+||.+.
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999994 566777 5565 4799999999999999 68999998888 7899999999999986
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.9e-25 Score=237.83 Aligned_cols=324 Identities=20% Similarity=0.175 Sum_probs=230.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH---
Q 009843 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE--- 100 (524)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~--- 100 (524)
.++.++++|. .+.+.|.-.--++.+|+ ++.|+||+|||++|.+|++.. +..++|++|++.|+.|..+.+..
T Consensus 72 rEa~~R~lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 72 REVSLRTLGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred HHHHHHHcCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4555677776 46667776666666665 999999999999999999843 56799999999999998888776
Q ss_pred -cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEeccccccc-c--
Q 009843 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-W-- 173 (524)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~~-~-- 173 (524)
+|+.+..+.+......+...+ ..+|+|+||-.++-.-+...+ .....+..+.++||||||.++= .
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeAr 220 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEAR 220 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccC
Confidence 588888888877766654433 267888888765322211111 0111235689999999999851 0
Q ss_pred ------C--CCCHHHHHH--------------------------------------HHHH--------------------
Q 009843 174 ------G--HDFRPSYRK--------------------------------------LSSL-------------------- 187 (524)
Q Consensus 174 ------g--~~fr~~~~~--------------------------------------l~~l-------------------- 187 (524)
| .+-...|.. +..+
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~ 300 (896)
T PRK13104 221 TPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIM 300 (896)
T ss_pred CceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhh
Confidence 0 000000100 0000
Q ss_pred ---------HHh--C----------------------------------------------C----------------CC
Q 009843 188 ---------RNY--L----------------------------------------------P----------------DV 194 (524)
Q Consensus 188 ---------~~~--~----------------------------------------------~----------------~~ 194 (524)
+.. | + -.
T Consensus 301 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~ 380 (896)
T PRK13104 301 LMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYN 380 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcc
Confidence 000 0 0 01
Q ss_pred CEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCcccc
Q 009843 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 270 (524)
Q Consensus 195 ~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~ 270 (524)
.+-+||+|+..+ ...+....++ .++..+.++|.+..... .......++..+.+.++. ..+.|+||||+|++.
T Consensus 381 kLsGMTGTa~te-~~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTE-AYEFQQIYNL---EVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhH-HHHHHHHhCC---CEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 356777777544 2334444433 35556677776654321 122235677777776643 467899999999999
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCC------------------------
Q 009843 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------ 326 (524)
Q Consensus 271 ~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~------------------------ 326 (524)
++.+++.|.+.|++...+||++.+.++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999995 9999999999999851
Q ss_pred ---------c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 327 ---------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 327 ---------v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
| =+||-...+.|..-=-|-.||+||.|.||.+..|.+.+|.
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 2788888999999999999999999999999999998875
No 93
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=237.57 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=214.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM 114 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~ 114 (524)
.+-|+|..+|..+-++.+++|.|.|.+|||.++-.+ +|....++|+.+|.++|.+|..++|..-.-.+...++..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDV-- 206 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDV-- 206 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecce--
Confidence 577999999999999999999999999999885433 345588999999999999999999877322333333222
Q ss_pred HHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-C
Q 009843 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D 193 (524)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~ 193 (524)
.-+|...-++.|.|++.+.-+ ...--...+.++|+||+|-+-+-..+ -.+..-.-.+| +
T Consensus 207 -----------TInP~ASCLVMTTEILRsMLY----RGSEvmrEVaWVIFDEIHYMRDkERG-----VVWEETIIllP~~ 266 (1041)
T KOG0948|consen 207 -----------TINPDASCLVMTTEILRSMLY----RGSEVMREVAWVIFDEIHYMRDKERG-----VVWEETIILLPDN 266 (1041)
T ss_pred -----------eeCCCCceeeeHHHHHHHHHh----ccchHhheeeeEEeeeehhccccccc-----eeeeeeEEecccc
Confidence 123445566666665533111 11111345899999999999662211 11222222345 7
Q ss_pred CCEEEEeccCChhHH-HHHHHHhCCCCCeEEeccCCCCcceEE------------EEeeC-chhhH--------------
Q 009843 194 VPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNLFYE------------VRYKD-LLDDA-------------- 245 (524)
Q Consensus 194 ~~ii~lSAT~~~~~~-~~i~~~l~l~~~~~~~~~~~~~~l~~~------------v~~~~-~~~~~-------------- 245 (524)
+..++||||.++... .+++..+.-+.+.++-..+..-.+... +..+. ..++.
T Consensus 267 vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 889999999988643 334444444455555444443333211 11111 00111
Q ss_pred ------------------------HHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCC------------------
Q 009843 246 ------------------------YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------------ 283 (524)
Q Consensus 246 ------------------------~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~------------------ 283 (524)
+-.+...+-.....|+|||+-|+++||.+|-.+.+..+
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 11233333334556899999999999999977765321
Q ss_pred ---------------------ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCC-----
Q 009843 284 ---------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK----- 337 (524)
Q Consensus 284 ---------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~----- 337 (524)
.+..+|+|+-+--++.+.-.|++|-+++|+||..|++|+|.| .+.|++...-+
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~rKfDG~~ 505 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVRKFDGKK 505 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeeccccCCcc
Confidence 467899999999999999999999999999999999999999 56666655443
Q ss_pred ----CHHHHHHHHhhcCCCCC--CceEEEEeccc-cHHHHHHHHHhc
Q 009843 338 ----SMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (524)
Q Consensus 338 ----s~~~y~Q~~GRagR~G~--~~~~i~~~~~~-d~~~~~~l~~~~ 377 (524)
|--+|+|++|||||.|. .|.|++.++.. +....+.+++..
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~ 552 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGS 552 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCC
Confidence 67799999999999997 46777777654 556666676553
No 94
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=224.79 Aligned_cols=268 Identities=18% Similarity=0.257 Sum_probs=176.3
Q ss_pred eEEEeCcHHHHHHHHHHHHHHcCCce-------eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh
Q 009843 80 IVLVVSPLIALMENQVIGLKEKGIAG-------EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (524)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~gi~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~ 152 (524)
.+||+-|.++|++|....++++.... ..+..+.. .......+.. ...| +++||+++..+.+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~---~r~Q~~ql~~---g~~i------vvGtpgRl~~~is 355 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVL---KRTQCKQLKD---GTHI------VVGTPGRLLQPIS 355 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHH---hHHHHHHhhc---Ccee------eecCchhhhhhhh
Confidence 57999999999999888777653221 01111110 1111112222 2444 5556665544432
Q ss_pred --hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-------CCCEEEEeccCChhHHHHHHHHhCCCCCeEE
Q 009843 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (524)
Q Consensus 153 --~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~ 223 (524)
........++|+|||+.++..|.+ ..|..+...+| ..+.+..|||+..-....+.+.+ +..|..+
T Consensus 356 ~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~erv-mhfptwV 429 (725)
T KOG0349|consen 356 KGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERV-MHFPTWV 429 (725)
T ss_pred ccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhh-ccCceeE
Confidence 223444788999999999887754 45555555555 34688999997643222222111 1112111
Q ss_pred e-------------------ccC-----------------CCCcceEEEEeeCchhhHH-----HHHHHHHHhcCCccEE
Q 009843 224 K-------------------SSF-----------------NRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAI 262 (524)
Q Consensus 224 ~-------------------~~~-----------------~~~~l~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~I 262 (524)
. .+. .+.|+..--...+...... +.-+..++++...++|
T Consensus 430 dLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkai 509 (725)
T KOG0349|consen 430 DLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAI 509 (725)
T ss_pred ecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceE
Confidence 1 000 0001100000000001111 1122234555677899
Q ss_pred EEeCccccHHHHHHHHHhCC---CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCH
Q 009843 263 VYCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (524)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 339 (524)
|||.|+.+|+.|..++.+.| ++++++||+..+.+|.+.++.|+.+.++.||||+++++|+|+..+.++|+..+|...
T Consensus 510 ifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k 589 (725)
T KOG0349|consen 510 IFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDK 589 (725)
T ss_pred EEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCccc
Confidence 99999999999999999875 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 340 EAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 340 ~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
..|+||+||.||..+-|.++.++...
T Consensus 590 ~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 590 TNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred chhhhhhhccchhhhcceeEEEeecc
Confidence 99999999999999999998887544
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=3.6e-25 Score=235.56 Aligned_cols=335 Identities=19% Similarity=0.282 Sum_probs=228.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHH--HHHHcCCCEEEEcCCCChHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i--~~~l~g~d~lv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~ 97 (524)
+.+...-.+.+|...+..||.+++ +.++++++.+..+||++|||++.-+-++ .....++.+.|..+..+.....
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhh
Confidence 334444445589999999999987 6688899999999999999999876554 3478899999999999988888
Q ss_pred HHHcCCc----eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 009843 98 LKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (524)
Q Consensus 98 l~~~gi~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (524)
+..+.+. +....+..++..+ .....+.++|-|.-.+ ..+.+.+......+++|||||-|.+.+-
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~~----------~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEKR----------RKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCCc----------ccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 8775443 3333322221111 1125566777775433 5556666666667899999999999987
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCCEEEEeccCChhHHHHHHHHhCC------CCCeEEeccCCCCcceEEEEeeCchhhH
Q 009843 174 GHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCL------QNPLVLKSSFNRPNLFYEVRYKDLLDDA 245 (524)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~--~~~ii~lSAT~~~~~~~~i~~~l~l------~~~~~~~~~~~~~~l~~~v~~~~~~~~~ 245 (524)
|.+.--. .-|..+.-... .+++|+||||.++. .++..++.- ..|+.+......-+..|.... ...
T Consensus 357 ~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r----~~~ 429 (1008)
T KOG0950|consen 357 GRGAILE-LLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSR----NKV 429 (1008)
T ss_pred ccchHHH-HHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchh----hHH
Confidence 7652211 11222222222 35699999999764 233444431 112222222211222232210 111
Q ss_pred HHHHH----------------HHHHh--cCCccEEEEeCccccHHHHHHHHHhC--------------------------
Q 009843 246 YADLC----------------SVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-------------------------- 281 (524)
Q Consensus 246 ~~~l~----------------~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------- 281 (524)
+..+. .+..+ ..+.++||||++++.|+.+|..+...
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 12222 11111 12446999999999999988655420
Q ss_pred ------------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC----CCCCHHHHHHH
Q 009843 282 ------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN----IPKSMEAFYQE 345 (524)
Q Consensus 282 ------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~----~p~s~~~y~Q~ 345 (524)
...++++|+|++.++|+.+...|++|.+.|++||+.++.|+|.|..|++|-.. -+.+.-+|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 12578999999999999999999999999999999999999999888887443 23588999999
Q ss_pred HhhcCCCCC--CceEEEEeccccHHHHHHHHHhc
Q 009843 346 SGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 346 ~GRagR~G~--~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
+|||||.|- .|.+++.+...|.++...++...
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSP 623 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHhcc
Confidence 999999986 57899999999998888777654
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=3.5e-24 Score=243.27 Aligned_cols=309 Identities=20% Similarity=0.218 Sum_probs=188.6
Q ss_pred CCCHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHHHH--Hhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCcee-
Q 009843 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQIP--ALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g-~d~lv~apTGsGKTl~~~lp--~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~- 106 (524)
.+|++|.+||.++. .| +.++++||||+|||++.+.. .+. ..+++|+|+|+.+|..|..+.++..+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 58999999998875 23 57899999999999774322 222 246899999999999999999998764322
Q ss_pred EeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH-HhhhccCCccEEEEecccccccc----C------C
Q 009843 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSW----G------H 175 (524)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l-~~~~~~~~l~~iViDEaH~i~~~----g------~ 175 (524)
........ ....... .....+++++|.-.+...-+...- ......+.+++|||||||+.... + .
T Consensus 493 ~~~~i~~i---~~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 493 TFASIYDI---KGLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred chhhhhch---hhhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 11110000 0000111 112345655555433211000000 01123456889999999995310 0 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHH------------HHHhCCC---CCeEEeccCCCCcceEEEE---
Q 009843 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV------------MESLCLQ---NPLVLKSSFNRPNLFYEVR--- 237 (524)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i------------~~~l~l~---~~~~~~~~~~~~~l~~~v~--- 237 (524)
++...|.....+...| +...|+|||||......-+ +..-.+- .|..+...+....+.+...
T Consensus 568 ~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 1122244445555544 5679999999975432211 0000010 1222222111111111000
Q ss_pred --------e---eCchh--------------------hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC-----
Q 009843 238 --------Y---KDLLD--------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----- 281 (524)
Q Consensus 238 --------~---~~~~~--------------------~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~----- 281 (524)
. ....+ ..+..+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0 00000 01122333343344578999999999999999888753
Q ss_pred -CC---ceEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC
Q 009843 282 -GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (524)
Q Consensus 282 -g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (524)
+. .+..+||+.+ ++..++++|+++.. .|+|++++++.|+|+|.|..||++..++|...|.|++||+.|-..
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 22 4567899875 46789999999887 589999999999999999999999999999999999999999643
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.3e-23 Score=225.31 Aligned_cols=325 Identities=20% Similarity=0.157 Sum_probs=230.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++++|. .+.+.|.-.--.+.+|+ ++.|+||.|||+++.+|++.. +..+.||+|+..|+.+-.+.+..
T Consensus 71 vrEaa~R~lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 71 VREASKRVFEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred HHHHHHHHhCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34556677786 46777876655565665 999999999999999999754 56699999999999997777665
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccccc--
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~-- 173 (524)
+|+.+..+.+......+...+ ..+|+|+||--++-.-+...+. ....+..+.++||||||.++--
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 689988887776654433222 3789999988664332222211 1112355889999999987520
Q ss_pred -------C--CCCHHHHHH-------------------------------------------HHHHH-------------
Q 009843 174 -------G--HDFRPSYRK-------------------------------------------LSSLR------------- 188 (524)
Q Consensus 174 -------g--~~fr~~~~~-------------------------------------------l~~l~------------- 188 (524)
| ..-...|.. +..+.
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~ 299 (908)
T PRK13107 220 RTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLY 299 (908)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccccc
Confidence 0 000000000 00000
Q ss_pred ------------Hh------C----------------------------------------------C------------
Q 009843 189 ------------NY------L----------------------------------------------P------------ 192 (524)
Q Consensus 189 ------------~~------~----------------------------------------------~------------ 192 (524)
.. | +
T Consensus 300 ~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (908)
T PRK13107 300 SAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQN 379 (908)
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHH
Confidence 00 0 0
Q ss_pred ----CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEE
Q 009843 193 ----DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (524)
Q Consensus 193 ----~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf 264 (524)
-..+.+||+|+..+. ..+....++ .++..+.++|....... .......++..+.+.++. ..+.|+|||
T Consensus 380 fFr~Y~kL~GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 380 YFRQYEKLAGMTGTADTEA-FEFQHIYGL---DTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HHHhhhHhhcccCCChHHH-HHHHHHhCC---CEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 013667777776543 334444443 35556667776543322 112235667777666653 367899999
Q ss_pred eCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCC------------------
Q 009843 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------ 326 (524)
Q Consensus 265 ~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~------------------ 326 (524)
|.|++.++.++..|...|++...+||+++..++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 456 t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 456 TVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred eCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 99999999999999999999999999999999999999999998 9999999999999851
Q ss_pred --------------c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 327 --------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 327 --------------v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
| =+||-...+.|..-=-|-.|||||.|.||.+..|++.+|.
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2799999999999999999999999999999999998876
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=2.5e-22 Score=224.24 Aligned_cols=308 Identities=18% Similarity=0.174 Sum_probs=210.9
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHH--HHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC--Cce
Q 009843 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPALA----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~--lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~g--i~~ 105 (524)
.++++|.+++..+. .|.+.|+...+|.|||+..+ +..+. ..+.+|||+|. +|+.+|.+++.+.. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998875 56788999999999998543 22222 14678999996 67788999998853 233
Q ss_pred eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009843 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (524)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (524)
..+++ ....+......... ...++++++|.+++... ......-.+++|||||||.+.... ..+.
T Consensus 248 ~~~~G--~~~eR~~~~~~~~~-~~~~dVvITSYe~l~~e------~~~L~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHG--NPEERAHQREELLV-AGKFDVCVTSFEMAIKE------KTALKRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeC--CHHHHHHHHHHHhc-ccCCCcceecHHHHHHH------HHHhccCCCCEEEEcCccccCCHH-------HHHH
Confidence 33333 22233222222211 12367777777765432 112222348899999999986532 3344
Q ss_pred HHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---------------------------------------
Q 009843 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (524)
Q Consensus 186 ~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~--------------------------------------- 226 (524)
.....+.....++|||||-.+...++...+.+..|.++...
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44455555568999999988777777776665554333210
Q ss_pred CCCCcceEEEEeeCch--------------------------------------------------------------hh
Q 009843 227 FNRPNLFYEVRYKDLL--------------------------------------------------------------DD 244 (524)
Q Consensus 227 ~~~~~l~~~v~~~~~~--------------------------------------------------------------~~ 244 (524)
...|.....+...... ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 0001111111110000 01
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEccccc
Q 009843 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (524)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VlVaT~a~~ 319 (524)
++..|..++.. ..+.++|||+......+.|.+.|...|+....+||+++..+|..+++.|.+. ...+|++|.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 12222223322 2456899999999999999999999999999999999999999999999853 245789999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEe
Q 009843 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (524)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~ 362 (524)
.|||+..+++||+||.|+++....|++||+.|.|+...+.+|.
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999999999999999999987765553
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.2e-22 Score=192.29 Aligned_cols=285 Identities=19% Similarity=0.237 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCChHH-HHHH--HHHhcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceeEe
Q 009843 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKS-MCYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFL 108 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKT-l~~~--lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~--gi~~~~~ 108 (524)
+++++|+.+-++++ +.++.++.|-||+||| +.|+ -.++..++++.+.+|....+.....+|+.. +.....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999999877655 4689999999999999 3454 345677999999999999998888888873 3455555
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
.+...... -+|-+++|-..+.++.+. ++++||||+|-.-- ..| ...+..+...
T Consensus 177 yg~S~~~f-------------------r~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~-~~d-~~L~~Av~~a- 229 (441)
T COG4098 177 YGDSDSYF-------------------RAPLVVATTHQLLRFKQA-----FDLLIIDEVDAFPF-SDD-QSLQYAVKKA- 229 (441)
T ss_pred ecCCchhc-------------------cccEEEEehHHHHHHHhh-----ccEEEEeccccccc-cCC-HHHHHHHHHh-
Confidence 54432211 133355554433344333 89999999998531 111 1111222222
Q ss_pred HhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceE-EEEeeCchhhHH------HHHHHHHHhc--CCc
Q 009843 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKDLLDDAY------ADLCSVLKAN--GDT 259 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~-~v~~~~~~~~~~------~~l~~~l~~~--~~~ 259 (524)
.-++-..|.||||++.+...++... -..+..+..-+.+..+.. .........+++ ..|..+|+.+ .+.
T Consensus 230 -rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 230 -RKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred -hcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 2236679999999998877665442 111222222233322210 111111112222 2577777653 468
Q ss_pred cEEEEeCccccHHHHHHHHHhC-C-CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCC-
Q 009843 260 CAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP- 336 (524)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p- 336 (524)
+++||+++++..+++++.|++. + ..++..|+. +..|.+..+.|++|++++|++|.++++|+.+|+|.+.+.-.--
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 9999999999999999999654 3 345778884 4578899999999999999999999999999999987754433
Q ss_pred -CCHHHHHHHHhhcCCCCC
Q 009843 337 -KSMEAFYQESGRAGRDQL 354 (524)
Q Consensus 337 -~s~~~y~Q~~GRagR~G~ 354 (524)
.|.+..+|.+||+||.-.
T Consensus 385 vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 385 VFTESALVQIAGRVGRSLE 403 (441)
T ss_pred cccHHHHHHHhhhccCCCc
Confidence 589999999999999854
No 100
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.1e-22 Score=213.71 Aligned_cols=325 Identities=20% Similarity=0.231 Sum_probs=240.5
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEe
Q 009843 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g----~d~lv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (524)
..+.+.|..|++.+... +-.++.+.||||||-+|+- .+|.+++.+||++|-++|..|..++++. +|.+...+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36788999999998765 5689999999999999863 3466788999999999999999999988 89999999
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCC-CHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLSSL 187 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~-fr~~~~~l~~l 187 (524)
++..+..++...|.....|. .+++++|--.+.+|- .++++|||||-|.-+--..+ .|..-+.+..+
T Consensus 277 HS~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred cccCChHHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 99999999999999999887 889888887776653 35899999999997643322 44455788889
Q ss_pred HHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC---CCcceEEEEeeCchhh---HHHHHHHHHHh--cCCc
Q 009843 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDD---AYADLCSVLKA--NGDT 259 (524)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~v~~~~~~~~---~~~~l~~~l~~--~~~~ 259 (524)
+.+..++|+|+-|||++-+........ .-....+..-+. .|++.+.-........ .-..|.+.+++ ..++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 999999999999999988765544221 011112221122 2333322221111111 11334444432 2466
Q ss_pred cEEEEeCcc------------------------------------------------------------ccHHHHHHHHH
Q 009843 260 CAIVYCLER------------------------------------------------------------TTCDELSAYLS 279 (524)
Q Consensus 260 ~~IIf~~s~------------------------------------------------------------~~~e~l~~~L~ 279 (524)
++|+|.|.| -.+|++++.|.
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 889998877 22378888887
Q ss_pred hC--CCceEEEcCCCCHHH--HHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCC------------CHHHHH
Q 009843 280 AG--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFY 343 (524)
Q Consensus 280 ~~--g~~~~~~h~~l~~~~--R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y~ 343 (524)
.. +.++..+.++.+... -+..+..|.+|+.+|||.|+++..|.|+|++..|...+.-. +..-+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 76 678888888876533 36779999999999999999999999999999987655322 355668
Q ss_pred HHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 344 Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
|-+|||||.+.+|.+++-.-..|...++.+...
T Consensus 582 QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred HHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 999999999999999888766666666665544
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.1e-22 Score=213.32 Aligned_cols=292 Identities=20% Similarity=0.280 Sum_probs=205.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
++..+..++..|+ .|+..|+--...++.|++.-++||||.|||.-.++.++ .+++++++|+||..|+.|..+.|++
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 4455666777787 89999999999999999999999999999965444443 3478999999999999999999998
Q ss_pred cC-----CceeE-eccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009843 101 KG-----IAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (524)
Q Consensus 101 ~g-----i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (524)
++ ..... +|+..+..++....+.+.+|. ++++ ++|..|+..-.+....-++++++||.+|.+..-+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIl------itTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDIL------ITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEE------EEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 64 22222 677778889899999999987 6665 4445554443333333469999999999986533
Q ss_pred CC---------CHHH--------------------HHHHHHHHH---------hCCCCCEEEEeccCChhH-HHHHH-HH
Q 009843 175 HD---------FRPS--------------------YRKLSSLRN---------YLPDVPILALTATAAPKV-QKDVM-ES 214 (524)
Q Consensus 175 ~~---------fr~~--------------------~~~l~~l~~---------~~~~~~ii~lSAT~~~~~-~~~i~-~~ 214 (524)
.. |-.. +..+..... ......++..|||..+.- +..+. ..
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 11 1110 011111111 112345889999987753 22222 23
Q ss_pred hCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCc---cccHHHHHHHHHhCCCceEEEcCC
Q 009843 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (524)
Q Consensus 215 l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s---~~~~e~l~~~L~~~g~~~~~~h~~ 291 (524)
|+...- .......|+.-..... ...+.+.++++..+.+ +|||++. ++.++++++.|+..|+++..+|++
T Consensus 300 lgFevG---~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~G-gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVG---SGGEGLRNIVDIYVES----ESLEKVVELVKKLGDG-GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccC---ccchhhhheeeeeccC----ccHHHHHHHHHHhCCC-eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 332211 1112223332222211 4566677778877664 8999999 899999999999999999999994
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcc----cccccccCCC-ccEEEEeCCCC
Q 009843 292 LNDKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK 337 (524)
Q Consensus 292 l~~~~R~~~~~~f~~g~~~VlVaT~----a~~~GiD~p~-v~~VI~~~~p~ 337 (524)
+...++.|..|+++|+|+.. ++-+|||+|. ++++|+++.|+
T Consensus 372 -----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 -----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred -----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 26779999999999999864 6889999996 79999999993
No 102
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.8e-21 Score=210.99 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC-CcEEEEccccc
Q 009843 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (524)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~VlVaT~a~~ 319 (524)
..++..+.+.+.. ..+.|+||-|.|....+.++..|.+.|++...+++.-...+-..+.+ .|+ ..|.|||+++|
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeecccc
Confidence 3566666655543 35789999999999999999999999999988888754444333332 343 56999999999
Q ss_pred ccccCCC---c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 320 MGIDRKD---V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 320 ~GiD~p~---v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
+|-|+.- | =+||....|.|..---|-.||+||.|.||.+..|.+.+|.
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 9999842 2 3799999999999999999999999999999999998875
No 103
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=3.9e-21 Score=208.57 Aligned_cols=129 Identities=22% Similarity=0.337 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009843 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (524)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~G 321 (524)
..+..|.+.++. ..+.++||||+|++.++.+++.|.+.|+.+..+||+++..+|..+++.|+.|+++|+|||+.+++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 345555555543 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeC-----CCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHH
Q 009843 322 IDRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (524)
Q Consensus 322 iD~p~v~~VI~~~-----~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l 373 (524)
+|+|++++||+++ .|.+..+|+||+||+||. ..|.+++|++..+......+
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 9999999999998 899999999999999998 68999999987765444443
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=7.7e-22 Score=218.48 Aligned_cols=315 Identities=21% Similarity=0.198 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHHcC---C-CEEEEcCCCChHHHHHHHHHhc-------CCCeEEEeCcHHHHHHHHHHHHHHcCCc--
Q 009843 38 QFRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEKGIA-- 104 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g---~-d~lv~apTGsGKTl~~~lp~l~-------~~~~~lvl~P~~~L~~q~~~~l~~~gi~-- 104 (524)
..++.|..++..++.. . .+++.||||+|||.+.+.+++. ...+++++.|++++++++.++++..+-.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3478999999887754 4 6789999999999998877753 2678999999999999999998873211
Q ss_pred --eeEeccCCCHHHHHHHHH---HhhcCCCccc-----EEEeCcccccC----hhhHHHHHhhhccCCccEEEEeccccc
Q 009843 105 --GEFLSSTQTMQVKTKIYE---DLDSGKPSLR-----LLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (524)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~---~l~~~~~~~~-----ll~~tpe~v~t----~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (524)
....++.....-...... .......... ...++|..+.. +.....+... ..+++|+||+|.+
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~S~vIlDE~h~~ 350 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALL----LTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHH----HhhchhhccHHhh
Confidence 111122221111110000 0000000111 11222221111 0001101111 1568999999998
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc----CCCCcceEEEEeeCchhhHH
Q 009843 171 SSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDAY 246 (524)
Q Consensus 171 ~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~----~~~~~l~~~v~~~~~~~~~~ 246 (524)
-+.. ..+ ....+-.+... -+.++|++|||+++...+.+...+.-........+ .+.+.+....... ......
T Consensus 351 ~~~~-~~~-~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~ 426 (733)
T COG1203 351 ADET-MLA-ALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVD-VEDGPQ 426 (733)
T ss_pred cccc-hHH-HHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchh-hhhhhh
Confidence 7642 111 11222222222 28999999999999988887777654433333222 1222222111110 000100
Q ss_pred HHHHHHH--HhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEcccccc
Q 009843 247 ADLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGM 320 (524)
Q Consensus 247 ~~l~~~l--~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~VlVaT~a~~~ 320 (524)
..+.... ....+.+++|.|||++.|.++++.|++.+..+..+||.+...+|.+.++.+. .+...|+|||++.+.
T Consensus 427 ~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 427 EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 0111111 1235678999999999999999999998878999999999999988887554 578899999999999
Q ss_pred cccCCCccEEEEeCCCCCHHHHHHHHhhcCCCC--CCceEEEEec
Q 009843 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYG 363 (524)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G--~~~~~i~~~~ 363 (524)
|+|+. .+.+ +.-+..+.+.+||+||++|.| ..|..+++-.
T Consensus 507 gvDid-fd~m--ITe~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 507 GVDID-FDVL--ITELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred Eeccc-cCee--eecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 99974 5555 444566999999999999999 4566666643
No 105
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.89 E-value=1e-21 Score=185.42 Aligned_cols=182 Identities=20% Similarity=0.246 Sum_probs=135.3
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc--------CCCeEEEeCcHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~--------~~~~~lvl~P~~ 88 (524)
|+.+++++.+.+.|++ +|+.+|+++|.++++.+.+|+++++.+|||+|||++|++|++. .+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 4567889999999999 8999999999999999999999999999999999999998863 245899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEE
Q 009843 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (524)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iV 163 (524)
+|+.|+...++.+ ++....+.+..........+ . ...+++++||+.+.. .+. .......++++|
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~iiv~T~~~l~~-----~l~~~~~~~~~l~~lI 148 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K---RGPHIVVATPGRLLD-----LLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c---CCCCEEEEChHHHHH-----HHHcCCCChhhCCEEE
Confidence 9999999888775 56666666655544332221 1 236787788765422 111 112344589999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHh
Q 009843 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
+||+|.+.+.+ |...+ ..+...++ +.+++++|||+++.+...+...+
T Consensus 149 vDE~h~~~~~~--~~~~~---~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 149 LDEADRMLDMG--FEDQI---REILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred EeChHHhhccC--hHHHH---HHHHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 99999998654 44443 33444444 68899999999987766444443
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5e-21 Score=208.10 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009843 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (524)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~ 320 (524)
..++..|.+.+.. ..+.|+||||+|+..++.++..|.+.|++...+|+ .+.+|+..+..|..+...|+|||+++|+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 4688888888854 36789999999999999999999999999999998 5778999999999999999999999999
Q ss_pred cccCC---Ccc-----EEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHH
Q 009843 321 GIDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (524)
Q Consensus 321 GiD~p---~v~-----~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~ 368 (524)
|+|++ .|. +||++..|.|...|.|++||+||.|.+|.++.|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 554 4599999999999999999999999999999999998753
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.6e-21 Score=211.17 Aligned_cols=305 Identities=18% Similarity=0.185 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCC
Q 009843 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (524)
Q Consensus 41 ~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~ 113 (524)
....+.+.++.+.+-+++.+|||+|||. |+|... ..+.+.+.-|.|--+....+++.+ +|.+..-..+...
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 3445667777778889999999999995 555432 245677777988666666655544 4433211111110
Q ss_pred HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-
Q 009843 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP- 192 (524)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~- 192 (524)
.. ++.. .+..++-|+|..++ +..+.....+..+++|||||||.=+- ..||- .--+..+....+
T Consensus 131 Rf------e~~~--s~~Trik~mTdGiL-----lrei~~D~~Ls~ys~vIiDEaHERSl-~tDil--Lgllk~~~~~rr~ 194 (845)
T COG1643 131 RF------ESKV--SPRTRIKVMTDGIL-----LREIQNDPLLSGYSVVIIDEAHERSL-NTDIL--LGLLKDLLARRRD 194 (845)
T ss_pred Ee------eccC--CCCceeEEeccHHH-----HHHHhhCcccccCCEEEEcchhhhhH-HHHHH--HHHHHHHHhhcCC
Confidence 00 0001 12355544444432 33444455677899999999998432 11111 112344444555
Q ss_pred CCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc-CCCCcceEEEEe-eCc-hhhHHHHHHHHHHhcCCccEEEEeCccc
Q 009843 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYCLERT 269 (524)
Q Consensus 193 ~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~-~~~~~l~~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~IIf~~s~~ 269 (524)
+..+|.||||+..+... ..++. -|++.... ...-.++|.-.. .+. ....+..........+.+.++||.+...
T Consensus 195 DLKiIimSATld~~rfs---~~f~~-apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 195 DLKLIIMSATLDAERFS---AYFGN-APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred CceEEEEecccCHHHHH---HHcCC-CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 68899999999876433 33322 33333222 122223331111 111 1222333333333456778999999999
Q ss_pred cHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCC---------
Q 009843 270 TCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--------- 336 (524)
Q Consensus 270 ~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p--------- 336 (524)
+.+..++.|.+ ....+.++||.|+.+++.++++--..|.-+||+||++++.+|.+|+|++||.-+.-
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999997 34779999999999999888777667777799999999999999999999976643
Q ss_pred ---------CCHHHHHHHHhhcCCCCCCceEEEEeccccHH
Q 009843 337 ---------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (524)
Q Consensus 337 ---------~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~ 368 (524)
-|..+..||.|||||-+ +|.|+=+|+.++..
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 38899999999999995 89999999976654
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.4e-21 Score=200.35 Aligned_cols=302 Identities=19% Similarity=0.223 Sum_probs=201.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHH
Q 009843 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (524)
Q Consensus 44 ~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (524)
.+++.++.+++-++++++||+|||. |+|-+. ..|.+.+.-|.|--+.....+... +|.......+.....
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF- 133 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF- 133 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe-
Confidence 4567777788889999999999995 666543 356667777987655554444332 222111111111000
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhCCCC
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDV 194 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~~~~~ 194 (524)
.+- ...+.++.|.|..++. ..+.....+..+++||+||||.=+ ...+. -.|+.+.+..++.
T Consensus 134 -----ed~--ts~~TrikymTDG~LL-----RE~l~Dp~LskYsvIIlDEAHERs-----l~TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 134 -----EDS--TSKDTRIKYMTDGMLL-----REILKDPLLSKYSVIILDEAHERS-----LHTDILLGLLKKILKKRPDL 196 (674)
T ss_pred -----ccc--CCCceeEEEecchHHH-----HHHhcCCccccccEEEEechhhhh-----hHHHHHHHHHHHHHhcCCCc
Confidence 011 1124788888877652 333444446678999999999832 22222 2355566666778
Q ss_pred CEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCC-cceEEEEe-eCchhhHHHHHHHHHHhcCCccEEEEeCccccHH
Q 009843 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (524)
Q Consensus 195 ~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e 272 (524)
.+|.+|||+..+..... ++ .-|++....-.-| .+.|.-.. .+..+..+..+.++-...+.+-++||....++.+
T Consensus 197 klIimSATlda~kfS~y---F~-~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 197 KLIIMSATLDAEKFSEY---FN-NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred eEEEEeeeecHHHHHHH---hc-CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 89999999976544322 22 2233333221111 22222211 1112344445555555566778999999999999
Q ss_pred HHHHHHHhC----C--C--ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC---------
Q 009843 273 ELSAYLSAG----G--I--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--------- 335 (524)
Q Consensus 273 ~l~~~L~~~----g--~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~--------- 335 (524)
.+++.|.+. + . -+.++||.|+.+++.++++.--.|..+|++||++++..|.++++++||.-++
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~ 352 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPR 352 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccc
Confidence 999988864 1 1 2468999999999999888888899999999999999999999999996663
Q ss_pred ---------CCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHH
Q 009843 336 ---------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (524)
Q Consensus 336 ---------p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~ 370 (524)
|-|..+-.||+|||||.| +|.|+-+|+.++...+
T Consensus 353 ~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 353 TGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred cCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 448999999999999995 8999999998877443
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2e-19 Score=190.75 Aligned_cols=326 Identities=19% Similarity=0.187 Sum_probs=230.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++++|. .+++.|.-..-.+++|+ ++.|.||.|||++..+|+.. .+..+.|++|+--|+.+-.+.+..
T Consensus 67 vREa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 44566677887 58889999998888885 88999999999999998875 377899999999999998887665
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (524)
+|+.+..+.+..+..++...+. .+|.|+|.--++-.-+...+. .......+.+.||||+|.++=
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 6999999988888877766654 678888876555443333331 122345578899999998751
Q ss_pred ----------cCC-----------------CC----------------------------------HHHHHHHH-HHHHh
Q 009843 173 ----------WGH-----------------DF----------------------------------RPSYRKLS-SLRNY 190 (524)
Q Consensus 173 ----------~g~-----------------~f----------------------------------r~~~~~l~-~l~~~ 190 (524)
.+. +| +..+..+. .++..
T Consensus 216 rtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 216 LVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred cCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 000 00 00001110 00000
Q ss_pred --C-------------------------------------------C-------------------CCCEEEEeccCChh
Q 009843 191 --L-------------------------------------------P-------------------DVPILALTATAAPK 206 (524)
Q Consensus 191 --~-------------------------------------------~-------------------~~~ii~lSAT~~~~ 206 (524)
+ + -..+.+||+|+...
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~ 375 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA 375 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH
Confidence 0 0 01477889998654
Q ss_pred HHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCC
Q 009843 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (524)
Q Consensus 207 ~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g 282 (524)
. ..+.+..++. ++..+.++|.+..... .......++..+.+.+.. ..+.|+||.+.|....+.+++.|.+.|
T Consensus 376 ~-~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 376 G-EQLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred H-HHHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 3 4455555543 4455666776644321 112235667777666643 368899999999999999999999999
Q ss_pred CceEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccccCC----------Cc-----cEEEEeCCCCCHHHHHHHH
Q 009843 283 ISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK----------DV-----RLVCHFNIPKSMEAFYQES 346 (524)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VlVaT~a~~~GiD~p----------~v-----~~VI~~~~p~s~~~y~Q~~ 346 (524)
++...+++.-...+-..+.+ .| ...|.|||+++|+|-|+. .| =+||-...|.|..---|-.
T Consensus 452 I~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 452 VPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 99999999855444333332 33 346999999999999985 22 3799999999999999999
Q ss_pred hhcCCCCCCceEEEEeccccHHH
Q 009843 347 GRAGRDQLPSKSLLYYGMDDRRR 369 (524)
Q Consensus 347 GRagR~G~~~~~i~~~~~~d~~~ 369 (524)
||+||.|.||.+..|.+.+|.-.
T Consensus 529 GRaGRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred cccccCCCCCceeEEEEcchhHH
Confidence 99999999999999999887543
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=2.4e-19 Score=196.08 Aligned_cols=121 Identities=24% Similarity=0.352 Sum_probs=108.0
Q ss_pred HHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccccc
Q 009843 246 YADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (524)
Q Consensus 246 ~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD 323 (524)
+..+.+.++. ..+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 4444444443 24668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCC-----CCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 324 RKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 324 ~p~v~~VI~~~~-----p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
+|++++||+++. |.+.++|+||+||+||. ..|.+++|++..+.
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 999999999885 78999999999999996 68999999985443
No 111
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=191.62 Aligned_cols=324 Identities=20% Similarity=0.238 Sum_probs=195.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHH--HHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCC
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQ 112 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~--~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~ 112 (524)
.|-.||++.+..+-.+..++++|||.+|||.+ |.+-...+ .+.+|++.|+.+|++|.........-... .....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t-~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKT-FLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCc-cccch
Confidence 46679999999999999999999999999975 34444433 78999999999999997766554321111 11111
Q ss_pred CHHHHHHHHHHhhcCCCcccEEEeCcccc----cChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~~ll~~tpe~v----~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
+ ......++.....-..+++++.||.+ .+|... ...-.+++++|+||+|++.....+ .-+..+.
T Consensus 590 s--l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~-----q~~cerIRyiIfDEVH~iG~~ed~-----l~~Eqll 657 (1330)
T KOG0949|consen 590 S--LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHH-----QKFCERIRYIIFDEVHLIGNEEDG-----LLWEQLL 657 (1330)
T ss_pred h--hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhh-----hhhhhcceEEEechhhhccccccc-----hHHHHHH
Confidence 1 11111222222223478999999843 333111 112234889999999999763322 1122222
Q ss_pred HhCCCCCEEEEeccCChhH-HHHHHHHhC--CCCC-eEE-------------eccCCCCcc-------------------
Q 009843 189 NYLPDVPILALTATAAPKV-QKDVMESLC--LQNP-LVL-------------KSSFNRPNL------------------- 232 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~-~~~i~~~l~--l~~~-~~~-------------~~~~~~~~l------------------- 232 (524)
. +-.+|++++|||..+.. ...+.++.+ ...+ ..+ -...+.++-
T Consensus 658 ~-li~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~ 736 (1330)
T KOG0949|consen 658 L-LIPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLR 736 (1330)
T ss_pred H-hcCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhh
Confidence 2 23789999999986532 111122111 0000 000 000000000
Q ss_pred ----------eEEEEe-----------------------------eCch-------------------------------
Q 009843 233 ----------FYEVRY-----------------------------KDLL------------------------------- 242 (524)
Q Consensus 233 ----------~~~v~~-----------------------------~~~~------------------------------- 242 (524)
...... ++..
T Consensus 737 ~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~ 816 (1330)
T KOG0949|consen 737 ELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQT 816 (1330)
T ss_pred ccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhh
Confidence 000000 0000
Q ss_pred ---------------h---hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHh------------------------
Q 009843 243 ---------------D---DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA------------------------ 280 (524)
Q Consensus 243 ---------------~---~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~------------------------ 280 (524)
+ ..+-.+...|++...-+.|+|.-.+..|+.+|..+..
T Consensus 817 k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~ 896 (1330)
T KOG0949|consen 817 KEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKR 896 (1330)
T ss_pred hhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 0 1112233334455566889999888888776643321
Q ss_pred -------------CCC---------------------------------------------------ceEEEcCCCCHHH
Q 009843 281 -------------GGI---------------------------------------------------SCAAYHAGLNDKA 296 (524)
Q Consensus 281 -------------~g~---------------------------------------------------~~~~~h~~l~~~~ 296 (524)
.++ .+.++|+||+...
T Consensus 897 a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~y 976 (1330)
T KOG0949|consen 897 ARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKY 976 (1330)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHH
Confidence 000 4578999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC--CCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHH
Q 009843 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (524)
Q Consensus 297 R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~--~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~ 374 (524)
|..+.-.|+.|...||+||.+++.|||.| +|.|++.+ +--++-.|.|++|||||.|-.-.+-+.+-.--..++++++
T Consensus 977 R~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLl 1055 (1330)
T KOG0949|consen 977 RSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLL 1055 (1330)
T ss_pred HHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcHHHHHHHH
Confidence 99999999999999999999999999999 67776655 3458999999999999999765444444333344555555
Q ss_pred Hh
Q 009843 375 SK 376 (524)
Q Consensus 375 ~~ 376 (524)
..
T Consensus 1056 ts 1057 (1330)
T KOG0949|consen 1056 TS 1057 (1330)
T ss_pred HH
Confidence 43
No 112
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.5e-18 Score=188.40 Aligned_cols=324 Identities=21% Similarity=0.192 Sum_probs=224.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.+++.|. .+.+.|.-.--.+.+|+ ++.|.||.|||+++.+|++. .+..+.|++|+--|+.+..+.+..
T Consensus 71 vrEa~~R~lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 71 AREAGKRVMGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHHHHHHHhCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 34555677785 56667776655565654 99999999999999999864 477899999999999998888776
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc-cc-
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS-SW- 173 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~-~~- 173 (524)
+|+.+..+.+..+..++...+. .+|+|+|.-.++-.-+...+. ....+..+.++||||+|.++ +.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 5899999988888888776655 789999987654332222221 11224568899999999974 10
Q ss_pred -------C--C-------------------------------CCH--------------------------------HHH
Q 009843 174 -------G--H-------------------------------DFR--------------------------------PSY 181 (524)
Q Consensus 174 -------g--~-------------------------------~fr--------------------------------~~~ 181 (524)
| . +|. ..|
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly 299 (913)
T PRK13103 220 RTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLY 299 (913)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhcc
Confidence 0 0 110 000
Q ss_pred -----HHHHH----HHHh--C----------------------------------------------C------------
Q 009843 182 -----RKLSS----LRNY--L----------------------------------------------P------------ 192 (524)
Q Consensus 182 -----~~l~~----l~~~--~----------------------------------------------~------------ 192 (524)
..+.. ++.. | +
T Consensus 300 ~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (913)
T PRK13103 300 SAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQN 379 (913)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHH
Confidence 00000 0000 0 0
Q ss_pred ----CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEE
Q 009843 193 ----DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (524)
Q Consensus 193 ----~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf 264 (524)
-..+.+||+|+..+. ..+....++ .++..+.++|.+..... .......++..+.+.++. ..+.|+||-
T Consensus 380 fFr~Y~kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVG 455 (913)
T PRK13103 380 YFRLYNKLSGMTGTADTEA-FEFRQIYGL---DVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVG 455 (913)
T ss_pred HHHhcchhccCCCCCHHHH-HHHHHHhCC---CEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 014667888875543 334444443 35555667776543221 112235677777776654 368899999
Q ss_pred eCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccccCC------------------
Q 009843 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK------------------ 325 (524)
Q Consensus 265 ~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VlVaT~a~~~GiD~p------------------ 325 (524)
+.|.+..+.++..|.+.|++..++++.....+-..+-+ .| ...|.|||+++|+|-|+.
T Consensus 456 T~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~ 532 (913)
T PRK13103 456 TATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPE 532 (913)
T ss_pred eCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHH
Confidence 99999999999999999998877887755444333332 34 456999999999999984
Q ss_pred --------------Cc-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 326 --------------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 326 --------------~v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
.| =+||-...+.|..-=-|-.||+||.|.||.+-.|++.+|.
T Consensus 533 ~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 533 QIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 3799999999999999999999999999999999998874
No 113
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=2.3e-19 Score=181.15 Aligned_cols=284 Identities=18% Similarity=0.205 Sum_probs=192.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCccc
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 132 (524)
.+-++.++||.||||.-+ +--+......++..|++-|+....+++.+.||++..+++..... ....++ ...
T Consensus 191 RkIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~-------~~~~~~-~a~ 261 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRF-------VLDNGN-PAQ 261 (700)
T ss_pred heEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeee-------cCCCCC-ccc
Confidence 455788899999999763 34445567789999999999999999999999999887653221 111122 356
Q ss_pred EEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHH
Q 009843 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (524)
Q Consensus 133 ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (524)
.+-+|-|++.+.. .+++.||||++.+.+-..++...-..|+...... -|. -.|.+..-+.
T Consensus 262 hvScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEi------HLC--GepsvldlV~ 321 (700)
T KOG0953|consen 262 HVSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEI------HLC--GEPSVLDLVR 321 (700)
T ss_pred ceEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHHHhhhhhhh------hcc--CCchHHHHHH
Confidence 7888999887643 3789999999999875444332211122211111 111 1234444444
Q ss_pred HHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCC
Q 009843 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAG 291 (524)
Q Consensus 213 ~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~ 291 (524)
..+.+....+....+.|-+ +. ...+.+..-+++...+-+| .|-|+++.-.+...+.+.|.. +++++|+
T Consensus 322 ~i~k~TGd~vev~~YeRl~--------pL--~v~~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYGs 390 (700)
T KOG0953|consen 322 KILKMTGDDVEVREYERLS--------PL--VVEETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYGS 390 (700)
T ss_pred HHHhhcCCeeEEEeecccC--------cc--eehhhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceEEEecC
Confidence 4444322222221111111 10 1111233334443333333 355889999999999988766 9999999
Q ss_pred CCHHHHHHHHHHHhc--CCCcEEEEcccccccccCCCccEEEEeCCC---------CCHHHHHHHHhhcCCCCC---Cce
Q 009843 292 LNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL---PSK 357 (524)
Q Consensus 292 l~~~~R~~~~~~f~~--g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p---------~s~~~y~Q~~GRagR~G~---~~~ 357 (524)
++++.|.+....|.+ ++++|||||+|+|||+|+ +++.||++++- -+..+..|-+|||||.|. .|.
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCce
Confidence 999999999999997 899999999999999999 69999999865 378899999999999975 344
Q ss_pred EEEEeccccHHHHHHHHHhcc
Q 009843 358 SLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 358 ~i~~~~~~d~~~~~~l~~~~~ 378 (524)
+..+ ..+|+..+..+++...
T Consensus 470 vTtl-~~eDL~~L~~~l~~p~ 489 (700)
T KOG0953|consen 470 VTTL-HSEDLKLLKRILKRPV 489 (700)
T ss_pred EEEe-eHhhHHHHHHHHhCCc
Confidence 4444 4578888888887543
No 114
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.6e-18 Score=183.51 Aligned_cols=324 Identities=18% Similarity=0.165 Sum_probs=220.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++++|. .+++.|.-..-.+..|+ ++.|.||-||||+..+|+.. .+..|-||+..--|+..-.+.+..
T Consensus 67 vREA~~R~lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 34566677887 57778887776677765 89999999999999999864 366777888888888865555443
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-cc-
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SW- 173 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~- 173 (524)
+|+.+....+......+...+. .+|.|+|.--++-..+...+ .....+..+.+.||||+|.++ +.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEA 215 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEA 215 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeeccc
Confidence 7999998888777777665543 67888886554443333222 112224557788888888874 10
Q ss_pred -------C--CCCHHHHHHHHHHHHhC-----------------------------------------------------
Q 009843 174 -------G--HDFRPSYRKLSSLRNYL----------------------------------------------------- 191 (524)
Q Consensus 174 -------g--~~fr~~~~~l~~l~~~~----------------------------------------------------- 191 (524)
| .+--..|..+..+...+
T Consensus 216 rTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~ 295 (925)
T PRK12903 216 KTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHK 295 (925)
T ss_pred CCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHH
Confidence 0 00001111111100000
Q ss_pred ------------------------------------------------C----------------CCCEEEEeccCChhH
Q 009843 192 ------------------------------------------------P----------------DVPILALTATAAPKV 207 (524)
Q Consensus 192 ------------------------------------------------~----------------~~~ii~lSAT~~~~~ 207 (524)
+ -..+.+||+|+..+.
T Consensus 296 lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~ 375 (925)
T PRK12903 296 VMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE 375 (925)
T ss_pred HHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH
Confidence 0 014667888875443
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCC
Q 009843 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (524)
Q Consensus 208 ~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 283 (524)
..+....++ .++..+.++|.+..... .......++..+.+.++. ..+.|+||.|.|.+.++.+++.|.+.|+
T Consensus 376 -~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi 451 (925)
T PRK12903 376 -QEFIDIYNM---RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANI 451 (925)
T ss_pred -HHHHHHhCC---CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 334444433 35556677776654321 111224566667666653 3678999999999999999999999999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccccCCCcc--------EEEEeCCCCCHHHHHHHHhhcCCCCC
Q 009843 284 SCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQL 354 (524)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g-~~~VlVaT~a~~~GiD~p~v~--------~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (524)
+..++++.-...+-..+- ..| ...|.|||+++|+|.|+.--. +||....|.|..---|..||+||.|.
T Consensus 452 ~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 452 PHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred CceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 999999875443333222 345 456999999999999986322 89999999999999999999999999
Q ss_pred CceEEEEeccccH
Q 009843 355 PSKSLLYYGMDDR 367 (524)
Q Consensus 355 ~~~~i~~~~~~d~ 367 (524)
||.+..|.+.+|.
T Consensus 529 pGss~f~lSLeD~ 541 (925)
T PRK12903 529 VGESRFFISLDDQ 541 (925)
T ss_pred CCcceEEEecchH
Confidence 9999999998874
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=8.1e-20 Score=166.93 Aligned_cols=156 Identities=30% Similarity=0.429 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcC----CceeEecc
Q 009843 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSS 110 (524)
Q Consensus 40 r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~g----i~~~~~~~ 110 (524)
+|+|.++++.+.+|+++++.||||+|||++|++|++.. .+++++++|+++|++|+.+.+...+ +....+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999888642 3499999999999999999998854 35566665
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009843 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (524)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (524)
......... ..+ .+ ..+++++||+.+.. .+.. ......+++||+||+|++..|+ ++..+..+.....
T Consensus 81 ~~~~~~~~~--~~~-~~--~~~ilv~T~~~l~~-----~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 81 GQSISEDQR--EVL-SN--QADILVTTPEQLLD-----LISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLK 148 (169)
T ss_dssp TSCHHHHHH--HHH-HT--TSSEEEEEHHHHHH-----HHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSH
T ss_pred ccccccccc--ccc-cc--cccccccCcchhhc-----cccccccccccceeeccCccccccccc--HHHHHHHHHHHhc
Confidence 555332211 111 22 26788888876422 2221 1133448999999999999874 7777777666665
Q ss_pred hCCCCCEEEEeccCChhH
Q 009843 190 YLPDVPILALTATAAPKV 207 (524)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~ 207 (524)
..++.+++++|||+++.+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 666789999999999544
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.4e-18 Score=172.35 Aligned_cols=163 Identities=22% Similarity=0.293 Sum_probs=123.1
Q ss_pred CCEEEEeccCChhHHHHHHHHhCCCCCeEEe-ccCCCCcceEEEEeeCchhhHHHHHHHHHHh--cCCccEEEEeCcccc
Q 009843 194 VPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 270 (524)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~ 270 (524)
.++|.+|||+.+.-.. ..-+---..+++ ...-.| ..++++.. .-+++|...++. ..+.+++|-+-|++.
T Consensus 387 ~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP--~ievRp~~---~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDP--EIEVRPTK---GQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHH---hccCceeEEeecCCCCCCC--ceeeecCC---CcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 4799999999875322 111000011111 122222 23344332 334445444433 346799999999999
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC-----CCCHHHHHHH
Q 009843 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQE 345 (524)
Q Consensus 271 ~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y~Q~ 345 (524)
+|.|.++|.+.|+++.++|++...-+|.+++++.+.|.++|||.-+.+-+|+|+|.|.+|..+|. ..|-.+.+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998885 4589999999
Q ss_pred HhhcCCCCCCceEEEEeccc
Q 009843 346 SGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 346 ~GRagR~G~~~~~i~~~~~~ 365 (524)
+|||.|. -.|.+++|.+.-
T Consensus 539 IGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 539 IGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHhhc-cCCeEEEEchhh
Confidence 9999997 468888887643
No 117
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=3.5e-19 Score=182.70 Aligned_cols=302 Identities=18% Similarity=0.195 Sum_probs=202.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCe-EEEeCcHHHHHHHHHHHH-HHcCCceeEec
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGI-VLVVSPLIALMENQVIGL-KEKGIAGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~-~lvl~P~~~L~~q~~~~l-~~~gi~~~~~~ 109 (524)
.-.++-.+.+.++...+-+++.+.||||||. |+|-.. .+|. +=+--|.|--+.....+. +++|++...-.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 3455667788888888889999999999995 777654 2444 555558876666655543 44665432222
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHH--HHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS--YRKLSSL 187 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~--~~~l~~l 187 (524)
+..... ++-.+. ...|-|.|..++ +..+.....+...++|||||||.=- ...+ +-.+..+
T Consensus 343 GYsIRF------EdcTSe--kTvlKYMTDGmL-----lREfL~epdLasYSViiiDEAHERT-----L~TDILfgLvKDI 404 (902)
T KOG0923|consen 343 GYSIRF------EDCTSE--KTVLKYMTDGML-----LREFLSEPDLASYSVIIVDEAHERT-----LHTDILFGLVKDI 404 (902)
T ss_pred ceEEEe------ccccCc--ceeeeeecchhH-----HHHHhccccccceeEEEeehhhhhh-----hhhhHHHHHHHHH
Confidence 111111 111111 244555555543 3345555667778999999999731 2222 2345667
Q ss_pred HHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCch---hhHHHHHHHHHHhcCCccEEEE
Q 009843 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL---DDAYADLCSVLKANGDTCAIVY 264 (524)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~---~~~~~~l~~~l~~~~~~~~IIf 264 (524)
.+..|+..+++.|||+..+-..+ .+.+..++..+-.|-.+...+...+.. +..+..+..+....+.+-+|||
T Consensus 405 ar~RpdLKllIsSAT~DAekFS~-----fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMDAEKFSA-----FFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred HhhCCcceEEeeccccCHHHHHH-----hccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 77778999999999997654332 234444555444443333333333221 1222223222233466779999
Q ss_pred eCccccHHHHHHHHHhC----C-----CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC
Q 009843 265 CLERTTCDELSAYLSAG----G-----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (524)
Q Consensus 265 ~~s~~~~e~l~~~L~~~----g-----~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~ 335 (524)
....+..+...+.|.+. | +-+.++|+.++.+.+..+++---.|..+|++||++++..|.+++|.+||.-+.
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99988887777776542 2 45789999999999999988888899999999999999999999999996553
Q ss_pred ------------------CCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 336 ------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 336 ------------------p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
|-|..+-.||+|||||.| ||.|+-+|+..
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 447888899999999997 89999999844
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=4.5e-18 Score=186.69 Aligned_cols=295 Identities=16% Similarity=0.134 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHHH----c------CCCEEEEcCCCChHHHHHHHHHh-----cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 39 FRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 39 ~r~~Q~~~i~~~l----~------g~d~lv~apTGsGKTl~~~lp~l-----~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
+|.+|.+|+.++. + .+..++.+|||||||++....+. ...+++|+|+|+.+|..|+.+.+..++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 6889999998764 2 24689999999999987653332 2367899999999999999999999865
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCc-cEEEEeccccccccCCCCHHHHH
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL-NLVAIDEAHCISSWGHDFRPSYR 182 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l-~~iViDEaH~i~~~g~~fr~~~~ 182 (524)
.... ...+. ..+...+... ...++++|...+... ............- .+||+||||+... | .
T Consensus 319 ~~~~--~~~s~---~~L~~~l~~~--~~~iivtTiQk~~~~--~~~~~~~~~~~~~~~lvIvDEaHrs~~-~-------~ 381 (667)
T TIGR00348 319 DCAE--RIESI---AELKRLLEKD--DGGIIITTIQKFDKK--LKEEEEKFPVDRKEVVVIFDEAHRSQY-G-------E 381 (667)
T ss_pred CCCc--ccCCH---HHHHHHHhCC--CCCEEEEEhHHhhhh--HhhhhhccCCCCCCEEEEEEcCccccc-h-------H
Confidence 3211 11111 1122222222 245665555544320 0111111111111 2899999998532 2 1
Q ss_pred HHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCC-CCCeEEeccCC-------CCcceEEEEeeCc------h------
Q 009843 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFN-------RPNLFYEVRYKDL------L------ 242 (524)
Q Consensus 183 ~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l-~~~~~~~~~~~-------~~~l~~~v~~~~~------~------ 242 (524)
-...++..+|+..+++|||||.......-...++. ....+...+.. ..++.|....... .
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 11335578899999999999964311111111110 01111111100 0011121111000 0
Q ss_pred ----------------------------------hhHHHHHHHHHHh---cCCccEEEEeCccccHHHHHHHHHhC----
Q 009843 243 ----------------------------------DDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG---- 281 (524)
Q Consensus 243 ----------------------------------~~~~~~l~~~l~~---~~~~~~IIf~~s~~~~e~l~~~L~~~---- 281 (524)
......+.+.... ..+.+++|+|.++..|..+++.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0001111111111 12478999999999999999988664
Q ss_pred -CCceEEEcCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcccccccccCCCccEEEEeCCCCC
Q 009843 282 -GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (524)
Q Consensus 282 -g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s 338 (524)
+..++.++++.+.. ....+.++|++ +.++|||.++++..|+|.|.+..++..-.-++
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 34566677654332 12467888876 68899999999999999999999887775555
Q ss_pred HHHHHHHHhhcCC
Q 009843 339 MEAFYQESGRAGR 351 (524)
Q Consensus 339 ~~~y~Q~~GRagR 351 (524)
-.++|.+||+.|
T Consensus 622 -h~LlQai~R~nR 633 (667)
T TIGR00348 622 -HGLLQAIARTNR 633 (667)
T ss_pred -cHHHHHHHHhcc
Confidence 468999999999
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.81 E-value=1.7e-17 Score=187.60 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=108.9
Q ss_pred CCEEEEeccCChh-HHHHHHHHhCCCCCeE--E-eccCC-CCcceEEEEe-eC-----chhh----HHHHHHHHHHhcCC
Q 009843 194 VPILALTATAAPK-VQKDVMESLCLQNPLV--L-KSSFN-RPNLFYEVRY-KD-----LLDD----AYADLCSVLKANGD 258 (524)
Q Consensus 194 ~~ii~lSAT~~~~-~~~~i~~~l~l~~~~~--~-~~~~~-~~~l~~~v~~-~~-----~~~~----~~~~l~~~l~~~~~ 258 (524)
.++|++|||++.. -...+...+++.+... + .++|+ ..+....+.. .+ ..+. ....|.+++.. .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 3588999999743 2455667788865332 2 23344 2232222211 11 1112 22333344443 34
Q ss_pred ccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCcc--EEEE
Q 009843 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCH 332 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~--~VI~ 332 (524)
++++||++|.+..+.+++.|... ++. .+..+.. ..|..+++.|++++..||++|..|.+|||+|+.. .||.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 57999999999999999999762 333 3333333 5788999999999999999999999999999865 6777
Q ss_pred eCCCC------------------------------CHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 333 FNIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 333 ~~~p~------------------------------s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
..+|. ....+.|.+||.=|.....-++++.+..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 77774 1233478999999987654455555443
No 120
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=8.1e-19 Score=176.95 Aligned_cols=338 Identities=17% Similarity=0.144 Sum_probs=217.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
+...++. .-..++..+|.+++..+.+|+++++.-.|.+||++||++.+.. .....++++|++++++++.+...-
T Consensus 275 ~~~~~~~-~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNK-NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhc-ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEE
Confidence 3333333 4557889999999999999999999999999999999977643 255789999999999986544221
Q ss_pred -------cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc-
Q 009843 101 -------KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS- 172 (524)
Q Consensus 101 -------~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~- 172 (524)
+.-...-.....+..+. ..+. +. ..+.+|..|.++.|..+.+.+...+..-...++++||+|...-
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~-~A~~--R~---~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTK-SALK--RI---GLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhH-HHHH--hc---CcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 11111111111111111 1111 11 2778888888766654433332222222356789999998753
Q ss_pred cCCCCHHHHHHHHHHHHhCC---CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec--cCCCCcceEEEEeeC------c
Q 009843 173 WGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKD------L 241 (524)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~--~~~~~~l~~~v~~~~------~ 241 (524)
.|.--....+.|..+..-|- +.+++-.+||....++. .....++.+...+.. +.....+.....+.. .
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhh
Confidence 22112233455555554443 66788888887766543 233344444333322 222222222221110 1
Q ss_pred hhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHh----CCC----ceEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009843 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQV 311 (524)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (524)
...++....+++.+ ..+-++|-||.+|+.||-+-..-++ .|- .+..|.||-..++|..+..+.-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 12333333333322 2356899999999999877554433 232 3567999999999999999999999999
Q ss_pred EEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEe--ccccHHHHH
Q 009843 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY--GMDDRRRME 371 (524)
Q Consensus 312 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~--~~~d~~~~~ 371 (524)
+|||++++.|||+...+.|++.++|.|+.++.|..|||||.++++.++... .|-|.-.+.
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhc
Confidence 999999999999999999999999999999999999999999998776554 344544443
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.79 E-value=8.1e-17 Score=174.27 Aligned_cols=281 Identities=17% Similarity=0.133 Sum_probs=184.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++..++.|.. +++.|.-..-.+.+| -++.|.||-|||+++.+|+.. .+..+.||++...|+.+-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 455667778874 778887766555554 599999999999999999854 377899999999999987776554
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc-cc-
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS-SW- 173 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~-~~- 173 (524)
+|+.+..+.+..+..++...+. .+|.|+|.--++-.-+...+. .......+.+.||||+|.++ +-
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 7999998888888777766554 678888876554433333321 11224558889999999874 10
Q ss_pred -------C----------------------CCCH------------HHHHHHHH---------------------HHHh-
Q 009843 174 -------G----------------------HDFR------------PSYRKLSS---------------------LRNY- 190 (524)
Q Consensus 174 -------g----------------------~~fr------------~~~~~l~~---------------------l~~~- 190 (524)
| .+|. .-...+.. ++..
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 0 0110 00000100 0000
Q ss_pred --------------------------------------------CC-------------------CCCEEEEeccCChhH
Q 009843 191 --------------------------------------------LP-------------------DVPILALTATAAPKV 207 (524)
Q Consensus 191 --------------------------------------------~~-------------------~~~ii~lSAT~~~~~ 207 (524)
.+ -..+.+||+|+..+
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 00 01477889998653
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCC
Q 009843 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (524)
Q Consensus 208 ~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 283 (524)
...+....++ .++..+.++|....... .......++..+.+.+.. ..+.|+||-|.|.+..+.+++.|.+.|+
T Consensus 373 ~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 3444444444 35556677776654331 112224566666655543 4678999999999999999999999999
Q ss_pred ceEEEcCCC-C-HHHHHHHHHHHhcC-CCcEEEEcccccccccC
Q 009843 284 SCAAYHAGL-N-DKARSSVLDDWISS-RKQVVVATVAFGMGIDR 324 (524)
Q Consensus 284 ~~~~~h~~l-~-~~~R~~~~~~f~~g-~~~VlVaT~a~~~GiD~ 324 (524)
+..++++.- . ..+-..+-+ .| ...|.|||+++|+|.|+
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred ccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCe
Confidence 999999973 2 333333332 34 34699999999999986
No 122
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.3e-18 Score=178.71 Aligned_cols=299 Identities=15% Similarity=0.170 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh------cCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCC
Q 009843 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (524)
Q Consensus 41 ~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l------~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~ 113 (524)
..+.+.+..+.+++-+++++.||||||. |+|-. ...|.+-+.-|.+.-+...+.+... +|.....-.+...
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 4566677777777888999999999995 55543 2366666667988877777666544 5433221111111
Q ss_pred HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC
Q 009843 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (524)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (524)
. .++..+ +...|-|+|..++....+. ...+.+.+.||+||||.=+- + ---.+-.++.+.....+
T Consensus 437 R------FEdvT~--~~T~IkymTDGiLLrEsL~-----d~~L~kYSviImDEAHERsl-N--tDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 437 R------FEDVTS--EDTKIKYMTDGILLRESLK-----DRDLDKYSVIIMDEAHERSL-N--TDILFGLLKKVLARRRD 500 (1042)
T ss_pred E------eeecCC--CceeEEEeccchHHHHHhh-----hhhhhheeEEEechhhhccc-c--hHHHHHHHHHHHHhhcc
Confidence 0 111112 3467777777765433222 22344578999999998542 1 11222334445555568
Q ss_pred CCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC-CCcceEEEEeeCchhhHHHHH----HHHHHhcCCccEEEEeCcc
Q 009843 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDDAYADL----CSVLKANGDTCAIVYCLER 268 (524)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-~~~l~~~v~~~~~~~~~~~~l----~~~l~~~~~~~~IIf~~s~ 268 (524)
..+|..|||+...- +.++++ ..|......-. .-++.|. +...++-++.. +.+-...+.+-++||....
T Consensus 501 lKliVtSATm~a~k---f~nfFg-n~p~f~IpGRTyPV~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQK---FSNFFG-NCPQFTIPGRTYPVEIMYT---KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred ceEEEeeccccHHH---HHHHhC-CCceeeecCCccceEEEec---cCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 89999999996543 344444 23332221111 1111111 11112222222 1111223456789999988
Q ss_pred ccHHHHHHHHH----hC------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC---
Q 009843 269 TTCDELSAYLS----AG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--- 335 (524)
Q Consensus 269 ~~~e~l~~~L~----~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~--- 335 (524)
++.|-....++ +. ++.+..+++.|+..-+.++++.--.|..++||||++++..+.+|++++||..+.
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 87665544443 32 578999999999998888888777888999999999999999999999997663
Q ss_pred ---------------CCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 336 ---------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 336 ---------------p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
|-|..+--||+|||||.| ||.|+-+|+..
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 458888899999999996 89999999864
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.79 E-value=1.4e-17 Score=173.67 Aligned_cols=307 Identities=19% Similarity=0.213 Sum_probs=220.0
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHH--HHHh----cCCCeEEEeCcHHHHHHHHHHHHHHc--CCc
Q 009843 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPAL----AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~--lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~~--gi~ 104 (524)
-.+|++|.+.++.+. .|-++|+.-..|-|||+-.+ +.-+ ...|.-+|++|...| .+|..+++++ +++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 378999999988865 46788999999999996321 2222 227889999998776 5689999987 455
Q ss_pred eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH
Q 009843 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (524)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (524)
+..+.+ ...++.....++.... ..+++++|.|++.... .....-++.++||||||++-... ..|
T Consensus 245 ~~~~~G--dk~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk------~~lk~~~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 245 VVVYHG--DKEERAALRRDIMLPG-RFDVCITSYEIAIKDK------SFLKKFNWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred eEEEeC--CHHHHHHHHHHhhccC-CCceEeehHHHHHhhH------HHHhcCCceEEEechhhhhcchh-------hHH
Confidence 555544 4466666666655543 5889999998775431 12222348999999999997643 566
Q ss_pred HHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc------CC------------------------------
Q 009843 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN------------------------------ 228 (524)
Q Consensus 185 ~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~------~~------------------------------ 228 (524)
..+.+.|.-.-.+++|+||-.+....++..|+..-|.++... |+
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 777778877778999999987766666666666555554310 00
Q ss_pred ----------------------------------------------------------CCcceEEEEeeC-c--h-----
Q 009843 229 ----------------------------------------------------------RPNLFYEVRYKD-L--L----- 242 (524)
Q Consensus 229 ----------------------------------------------------------~~~l~~~v~~~~-~--~----- 242 (524)
-|.++.-..+.+ . .
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 000000000000 0 0
Q ss_pred -h---hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEc
Q 009843 243 -D---DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR---KQVVVAT 315 (524)
Q Consensus 243 -~---~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~---~~VlVaT 315 (524)
. ..++.|+..|++ .+.+++||..-....+-|..+..-.|+....+.|.++.++|...++.|.... .-.|++|
T Consensus 469 nSGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred cCcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 0 112223333333 4568999988777788888888788999999999999999999999999643 4478999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
-|.|.|||+-..+.||.||-.+++..=.|...||.|-|+...+.+|
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 9999999999999999999999999999999999999998776555
No 124
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=1.2e-17 Score=145.53 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHhc--CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009843 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (524)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~G 321 (524)
.+...+.+++... .++++||||++.+.++.+++.|.+.+..+..+||+++..+|..+.+.|.++...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5777777777765 37789999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
+|+|.+++||+++.|++...|.|++||+||.|+.+.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887653
No 125
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1e-15 Score=165.40 Aligned_cols=282 Identities=19% Similarity=0.179 Sum_probs=185.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.+++.|. .+.+.|.-.--++.+|+ ++.|.||-|||+++.+|+... +..+-||++.--|+..-.+.+..
T Consensus 74 vREa~~R~lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 74 VREASKRVLGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred HHHHHHHHhCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 34556677786 46677776666666664 999999999999999998763 77899999999999876666544
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---hhccCCccEEEEecccccc-cc-
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS-SW- 173 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~-~~- 173 (524)
+|+.+..+.+.....++...+. .+|+|+|+--++-.-+...+.. ......+.+.||||+|.++ +.
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEA 222 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYA--------CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEA 222 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcC--------CCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccC
Confidence 7999999888777777665543 7899999876665544444432 1234568899999999874 10
Q ss_pred -------CC--CCHHHHHHHH--------------------------------------H--------------------
Q 009843 174 -------GH--DFRPSYRKLS--------------------------------------S-------------------- 186 (524)
Q Consensus 174 -------g~--~fr~~~~~l~--------------------------------------~-------------------- 186 (524)
|. .-...|.... .
T Consensus 223 rTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~ 302 (939)
T PRK12902 223 RTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFN 302 (939)
T ss_pred CCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHH
Confidence 00 0000010000 0
Q ss_pred -HHHh--C----------------------------------------------C----------------CCCEEEEec
Q 009843 187 -LRNY--L----------------------------------------------P----------------DVPILALTA 201 (524)
Q Consensus 187 -l~~~--~----------------------------------------------~----------------~~~ii~lSA 201 (524)
++.. + + -..+.+||+
T Consensus 303 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTG 382 (939)
T PRK12902 303 ALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTG 382 (939)
T ss_pred HHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCC
Confidence 0000 0 0 014668888
Q ss_pred cCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHH
Q 009843 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAY 277 (524)
Q Consensus 202 T~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~ 277 (524)
|+..+. ..+....++ .++..+.++|....... .......++..+.+.++. ..+.|+||-+.|.+..+.+++.
T Consensus 383 Ta~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~ 458 (939)
T PRK12902 383 TAKTEE-VEFEKTYKL---EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSAL 458 (939)
T ss_pred CCHHHH-HHHHHHhCC---cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHH
Confidence 875443 334444443 35566677776654322 112234666666666553 3688999999999999999999
Q ss_pred HHhCCCceEEEcCC-CC-HHHHHHHHHHHhcC-CCcEEEEcccccccccCC
Q 009843 278 LSAGGISCAAYHAG-LN-DKARSSVLDDWISS-RKQVVVATVAFGMGIDRK 325 (524)
Q Consensus 278 L~~~g~~~~~~h~~-l~-~~~R~~~~~~f~~g-~~~VlVaT~a~~~GiD~p 325 (524)
|.+.|++..++++. .. ..+-..+-+ .| ...|-|||+++|+|-|+.
T Consensus 459 L~~~gi~h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 459 LQEQGIPHNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHcCCchheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 99999999999997 33 233222222 34 346999999999998863
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=1.2e-17 Score=177.04 Aligned_cols=292 Identities=20% Similarity=0.231 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHH--HHHhcC---CCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009843 37 AQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g-~d~lv~apTGsGKTl~~~--lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (524)
..+|.+|..||..+. +| +.+|++|+||+|||.++. +-.|.+ .+++|+++-.++|..|....+..+-....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 468999999997755 44 359999999999996543 223333 67999999999999999988877532221
Q ss_pred EeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHH-HHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009843 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (524)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~-~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (524)
..+.... ..+..+.++.+.|.-.+....--. .-......+.+++|||||||+=+ |...+
T Consensus 244 ~~n~i~~-----------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---------~~~~~ 303 (875)
T COG4096 244 KMNKIED-----------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---------YSEWS 303 (875)
T ss_pred ceeeeec-----------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---------HhhhH
Confidence 1111110 001112455444433221110000 00112223459999999999743 34444
Q ss_pred HHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCe--------------------EEeccCCCCcceEE----------
Q 009843 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--------------------VLKSSFNRPNLFYE---------- 235 (524)
Q Consensus 186 ~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~--------------------~~~~~~~~~~l~~~---------- 235 (524)
.+...|... .+++|||+......+-...++ ..|. .+...+.+..+++.
T Consensus 304 ~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~-g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 304 SILDYFDAA-TQGLTATPKETIDRSTYGFFN-GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHH-HHhhccCcccccccccccccC-CCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 555555333 445599987643221111111 1111 11111111111111
Q ss_pred -----------EEe-------eCchhhHHHHHHHHHHh--cC--CccEEEEeCccccHHHHHHHHHhC-----CCceEEE
Q 009843 236 -----------VRY-------KDLLDDAYADLCSVLKA--NG--DTCAIVYCLERTTCDELSAYLSAG-----GISCAAY 288 (524)
Q Consensus 236 -----------v~~-------~~~~~~~~~~l~~~l~~--~~--~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~ 288 (524)
... ....+.....+.++++. .+ .+++||||.+..+|+.+.+.|.+. |--+..+
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 000 00001233445555555 22 468999999999999999999875 2235556
Q ss_pred cCCCCHHHHHHHHHHHhc-C-CCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 009843 289 HAGLNDKARSSVLDDWIS-S-RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (524)
Q Consensus 289 h~~l~~~~R~~~~~~f~~-g-~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (524)
.++-... +..+..|.. . -.+|.|+.+++..|||+|.|..++++..-.|..-|.|++||+-|-
T Consensus 462 T~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 462 TGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 6654332 344555654 3 345777789999999999999999999999999999999999995
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.75 E-value=1.8e-17 Score=180.64 Aligned_cols=307 Identities=18% Similarity=0.189 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 009843 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (524)
....++++++++.+.+-+++.+.||+|||. |+|.... ...+++--|.|--+-...++... .+....
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g--- 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG--- 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC---
Confidence 456778888998888899999999999995 4444321 23455556876555444444332 221111
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (524)
.....+.+- .. ......+++|+|..++ +..|........+..+|+||+|.=+. ..||-- ..++.+..
T Consensus 249 ~~VGYqvrl---~~--~~s~~t~L~fcTtGvL-----Lr~L~~~~~l~~vthiivDEVHER~i-~~DflL--i~lk~lL~ 315 (924)
T KOG0920|consen 249 EEVGYQVRL---ES--KRSRETRLLFCTTGVL-----LRRLQSDPTLSGVTHIIVDEVHERSI-NTDFLL--ILLKDLLP 315 (924)
T ss_pred CeeeEEEee---ec--ccCCceeEEEecHHHH-----HHHhccCcccccCceeeeeeEEEccC-CcccHH--HHHHHHhh
Confidence 111111100 00 0111256766665543 44455555566789999999998654 334432 23455666
Q ss_pred hCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcc-------------------eE-------------EEE
Q 009843 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-------------------FY-------------EVR 237 (524)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l-------------------~~-------------~v~ 237 (524)
..|+.++|+||||...+... .+++ ..|++....+.-|.. .+ .+.
T Consensus 316 ~~p~LkvILMSAT~dae~fs---~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFS---DYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hCCCceEEEeeeecchHHHH---HHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 77899999999999754332 2222 223222211111100 00 000
Q ss_pred eeCchhhHHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhC-------CCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 009843 238 YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRK 309 (524)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (524)
..+..-+.+..+..++.. ...+.+|||.+...+...+.+.|... .+-+..+|+.|+..+++.+...--.|..
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 000112333444444433 34678999999999999999999753 2557899999999999999988889999
Q ss_pred cEEEEcccccccccCCCccEEEEeCCCC------------------CHHHHHHHHhhcCCCCCCceEEEEeccccHH
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~ 368 (524)
+||+||++++..|-++||-+||..+.-+ |...-.||.|||||. .+|.|+-+|+.....
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 9999999999999999999999666432 566779999999998 789999999876543
No 128
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.3e-17 Score=172.36 Aligned_cols=301 Identities=17% Similarity=0.203 Sum_probs=185.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc-----------CCCeEEEeCcHHHHHHHHHH----HHHHcCCceeEe
Q 009843 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLVVSPLIALMENQVI----GLKEKGIAGEFL 108 (524)
Q Consensus 44 ~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~-----------~~~~~lvl~P~~~L~~q~~~----~l~~~gi~~~~~ 108 (524)
.++++++..+--+++++.||+|||. |+|-+. .+|.+=|.-|.|--+-.... +|..+|-.+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 3567777777778999999999995 666543 14455556687754443333 333333333222
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
....+ .-.+..+|.++|..++ +..+....-+..++.||+||||.=+-...=.-....++-.++
T Consensus 340 IRfd~------------ti~e~T~IkFMTDGVL-----LrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 340 IRFDG------------TIGEDTSIKFMTDGVL-----LREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred EEecc------------ccCCCceeEEecchHH-----HHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 11100 0112355655555543 233444444556889999999985421100011112233344
Q ss_pred HhCC-------CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeC---chhhHHHHHHHHHHhcCC
Q 009843 189 NYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD---LLDDAYADLCSVLKANGD 258 (524)
Q Consensus 189 ~~~~-------~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~---~~~~~~~~l~~~l~~~~~ 258 (524)
.... ...+|+||||+.-.....-...+-+..| ++......-.+..++.... ...+.+...+.+-+..+.
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 3332 3459999999854432211222333444 3333333222333333222 223455666666677788
Q ss_pred ccEEEEeCccccHHHHHHHHHhC-----C-C-------------------------------------------------
Q 009843 259 TCAIVYCLERTTCDELSAYLSAG-----G-I------------------------------------------------- 283 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~-----g-~------------------------------------------------- 283 (524)
+.+|||+....+++++.+.|++. + .
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 88999999999999999999863 0 0
Q ss_pred --------------------------------------------ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009843 284 --------------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (524)
Q Consensus 284 --------------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~ 319 (524)
-|..+++=++.+++.++++.--.|..=++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 245666667777777777776778888999999999
Q ss_pred ccccCCCccEEEEeCCCC------------------CHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 320 MGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
..+.+|+|++||..+.-+ |..+--||+|||||.| +|+|+-+|+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999777543 5556689999999997 89999999754
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=1.3e-15 Score=170.15 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=108.6
Q ss_pred CEEEEeccCC--hhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEe--eC-----chhhHHHHHHHHHHh--cCCccEEE
Q 009843 195 PILALTATAA--PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KD-----LLDDAYADLCSVLKA--NGDTCAIV 263 (524)
Q Consensus 195 ~ii~lSAT~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~--~~-----~~~~~~~~l~~~l~~--~~~~~~II 263 (524)
++|++|||++ +.. ++...+++.........+...+-...+.. .+ ..+.-.+.+.+.+.. ..+++++|
T Consensus 575 ~~i~tSATL~v~~~f--~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LV 652 (820)
T PRK07246 575 KTYFVSATLQISPRV--SLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILV 652 (820)
T ss_pred eEEEEecccccCCCC--cHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5789999996 332 36777887544333222222111111111 01 111222233333211 34568999
Q ss_pred EeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCC--CccEEEEeCCCC----
Q 009843 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK---- 337 (524)
Q Consensus 264 f~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p--~v~~VI~~~~p~---- 337 (524)
+++|.+..+.+++.|......+ ...|.-. .+..++++|++++..||++|..|.+|||+| +...||...+|.
T Consensus 653 LFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~ 729 (820)
T PRK07246 653 LFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPE 729 (820)
T ss_pred EECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCC
Confidence 9999999999999997665544 4444222 246689999998889999999999999997 355667677663
Q ss_pred --------------------------CHHHHHHHHhhcCCCCCCceEEEEeccc-c-HHHHHHHHHhccC
Q 009843 338 --------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD-D-RRRMEFILSKNQS 379 (524)
Q Consensus 338 --------------------------s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d-~~~~~~l~~~~~~ 379 (524)
-.-.+.|-+||.=|.....-+++++++. . ...-+.+++..+.
T Consensus 730 dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 730 DPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred CHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCC
Confidence 2334589999999987644345554443 2 2233455555543
No 130
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=6.7e-18 Score=133.63 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.8
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 009843 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (524)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G 353 (524)
+.|+..|+.+..+||+++.++|..+++.|.+++..|||||+++++|||+|++++||+++.|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=3.7e-14 Score=161.32 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=112.4
Q ss_pred CEEEEeccCChh-HHHHHHHHhCCCCC----eEEeccCCCC-cceEEEEe-eCc-----hhhHHHHHH----HHHHhcCC
Q 009843 195 PILALTATAAPK-VQKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KDL-----LDDAYADLC----SVLKANGD 258 (524)
Q Consensus 195 ~ii~lSAT~~~~-~~~~i~~~l~l~~~----~~~~~~~~~~-~l~~~v~~-~~~-----~~~~~~~l~----~~l~~~~~ 258 (524)
++|++|||++.. ....+...+++.+. ..+.++|+.. +....+.. .+. .+.-...+. +++.. .+
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~-~~ 752 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA-TK 752 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-CC
Confidence 578889998753 23445567777532 2334445432 22222211 110 112223333 33333 34
Q ss_pred ccEEEEeCccccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCC--ccEEEEeC
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFN 334 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~--v~~VI~~~ 334 (524)
+.++|+++|.+..+.+++.|..... ....+.=|++...|..+++.|++++-.||++|..|.+|||+|+ ++.||...
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 5799999999999999999976432 1222222444456789999999988889999999999999997 47888888
Q ss_pred CCC------------------------------CHHHHHHHHhhcCCCCCCceEEEEeccc-c-HHHHHHHHHhcc
Q 009843 335 IPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD-D-RRRMEFILSKNQ 378 (524)
Q Consensus 335 ~p~------------------------------s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d-~~~~~~l~~~~~ 378 (524)
+|. ..-.+.|-+||.=|....--++++.++. . ...-+.+++..+
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 774 1223478899999987654445554443 2 223344554443
No 132
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=2.1e-15 Score=158.34 Aligned_cols=316 Identities=17% Similarity=0.129 Sum_probs=206.6
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCChHHH--HHHHHHhcC----CCeEEEeCcHHHHHHHHHHHHHHcCC--ce
Q 009843 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGI--AG 105 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl--~~~lp~l~~----~~~~lvl~P~~~L~~q~~~~l~~~gi--~~ 105 (524)
.+.++|++.++.+. ++...++--..|-|||. +..|.+|.. .+.+|||||. +++.||+.++..... .+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 57889999998875 34556778899999994 333555544 3789999995 889999999999643 45
Q ss_pred eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcc-cccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH
Q 009843 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (524)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe-~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (524)
.++++...................-.+..+..-+ +++|...+...........++++|+||.|.|-... .++
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpn-------s~i 356 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPN-------SKI 356 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCc-------cHH
Confidence 6666665531110000000000000111111111 23333322222223333458999999999997655 566
Q ss_pred HHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCC---------------------------------------------
Q 009843 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN--------------------------------------------- 219 (524)
Q Consensus 185 ~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~--------------------------------------------- 219 (524)
......++....|+||+|+-.+-...++..+....
T Consensus 357 slackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 357 SLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 66777888888999999985543333332221111
Q ss_pred ---------------------CeEEecc--------------------------------------CCCCcceEEE---E
Q 009843 220 ---------------------PLVLKSS--------------------------------------FNRPNLFYEV---R 237 (524)
Q Consensus 220 ---------------------~~~~~~~--------------------------------------~~~~~l~~~v---~ 237 (524)
..++... .+-|.+...- .
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 1111000 0001111000 0
Q ss_pred e--eC-----chhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHH-hCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 009843 238 Y--KD-----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDWISS 307 (524)
Q Consensus 238 ~--~~-----~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (524)
. .+ ....++..+..+++. ..+.++|+|..++....-+...|. ..|+....+.|..+...|..+.++|.++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 0 00 001244444444442 245589999999999999999998 6799999999999999999999999977
Q ss_pred CC-c-EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 308 RK-Q-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 308 ~~-~-VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
+. . .|++|.+.|-|+|+-..+-||.||+.+++.+=.|..-||-|.|+.-.+++|
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 54 3 578899999999999999999999999999999999999999998776665
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.68 E-value=5.3e-15 Score=158.96 Aligned_cols=311 Identities=19% Similarity=0.114 Sum_probs=186.4
Q ss_pred CCCHHHHHHHHHHHc---C-------CCEEEEcCCCChHHHHHH--HHHhcC---C-----CeEEEeCcHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLS---G-------RDCFCLMPTGGGKSMCYQ--IPALAK---P-----GIVLVVSPLIALMENQVIG 97 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~---g-------~d~lv~apTGsGKTl~~~--lp~l~~---~-----~~~lvl~P~~~L~~q~~~~ 97 (524)
.++|+|+|.++-+.+ | ..+++.-..|+|||+-.+ +..+.+ . .+.|||+| .+|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 689999999988653 2 235666689999996321 222322 3 67999999 4899999999
Q ss_pred HHHcCCc----eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 009843 98 LKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (524)
Q Consensus 98 l~~~gi~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (524)
+.+-.+. .....+.... .... ...+... ..-.+.+|..+.+..-+....+......++++|+||.|..-.-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~-~~sil~~---~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIK-LKSILFL---GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHhccccccceeeeecccch-hhhh-hHHHHHh---hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 8884332 2222222221 0000 0011100 0112334444444443333344444566999999999998542
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc------CCC------------------
Q 009843 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNR------------------ 229 (524)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~------~~~------------------ 229 (524)
. ..+-.....+.-...|+||+|+-.+...++.+.+++-.|..+... +..
T Consensus 392 ~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 392 D-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred h-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 2 222223333434458999999988777777777776666544210 000
Q ss_pred --------------------------Ccce-EEEEeeCch--hh------------------------------------
Q 009843 230 --------------------------PNLF-YEVRYKDLL--DD------------------------------------ 244 (524)
Q Consensus 230 --------------------------~~l~-~~v~~~~~~--~~------------------------------------ 244 (524)
|..+ +.+.-.... ..
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 0000 001000000 00
Q ss_pred ----------------------------------HHHHHHHHHHhcCCccEEE---EeCccccH-HHHHHHHHhCCCceE
Q 009843 245 ----------------------------------AYADLCSVLKANGDTCAIV---YCLERTTC-DELSAYLSAGGISCA 286 (524)
Q Consensus 245 ----------------------------------~~~~l~~~l~~~~~~~~II---f~~s~~~~-e~l~~~L~~~g~~~~ 286 (524)
++..|..++.. .++++++ |....... +.+.+..+-.|..+.
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 11111111100 0111222 22223333 333334444589999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCC--c-EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEe
Q 009843 287 AYHAGLNDKARSSVLDDWISSRK--Q-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (524)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~--~-VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~ 362 (524)
.+||.|+..+|+.+.+.|.+..- . .|.+|.|.|.||++=+.+.||.+|.+++++.-.|.++||-|+|+.-.|++|-
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 99999999999999999996433 3 5677889999999999999999999999999999999999999999887773
No 134
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.67 E-value=1.4e-15 Score=165.94 Aligned_cols=315 Identities=20% Similarity=0.229 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHH---HH---HHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009843 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CY---QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl---~~---~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (524)
.++|.+|.+.++.++ .++++|+.-..|-|||+ +| +.-.....|..|||+|+-.+...+.+--....+.+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~~mn~i 448 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWTDMNVI 448 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHhhhcee
Confidence 689999999988765 67899999999999994 33 333444578899999997766544433333567777
Q ss_pred EeccCCCHHHHHHHHHHhhcC---CCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 009843 107 FLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (524)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~---~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (524)
.+++..........+.-.... .-++.++++|.|++... .++.. -.+.+++|||||.+-.-. .
T Consensus 449 ~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~-------i~w~~~~vDeahrLkN~~-------~ 514 (1373)
T KOG0384|consen 449 VYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK-------IPWRYLLVDEAHRLKNDE-------S 514 (1373)
T ss_pred eeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc-------CCcceeeecHHhhcCchH-------H
Confidence 777766555444444433333 22467888888876543 22222 237789999999986422 2
Q ss_pred HHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec------cCC----------------------------
Q 009843 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS------SFN---------------------------- 228 (524)
Q Consensus 183 ~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~------~~~---------------------------- 228 (524)
.|-.....|.-.-.+++|+||-.+..+.+...+++..|.-+.. .++
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 2222344444455789999998877777776665554433321 000
Q ss_pred ----CCcceEEEEeeC-----------------------------------------------chhh---HH------HH
Q 009843 229 ----RPNLFYEVRYKD-----------------------------------------------LLDD---AY------AD 248 (524)
Q Consensus 229 ----~~~l~~~v~~~~-----------------------------------------------~~~~---~~------~~ 248 (524)
.+.-.+.|...+ .... .. ..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 000001111000 0000 00 12
Q ss_pred HHHHHHh---------------cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC---CCc
Q 009843 249 LCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQ 310 (524)
Q Consensus 249 l~~~l~~---------------~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~ 310 (524)
|..+|.. ..+.++|||..-....+-|+++|...+++.-.+.|.+..+.|++.++.|... ..-
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 2222222 2467899999999999999999999999999999999999999999999953 455
Q ss_pred EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE--eccc
Q 009843 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD 365 (524)
Q Consensus 311 VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~--~~~~ 365 (524)
.|.+|-|.|.|||+-..+.||.||-.+++.+=+|..-||.|-|+...+-+| ++.+
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 899999999999999999999999999999999999999999998765444 5544
No 135
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.8e-14 Score=143.73 Aligned_cols=322 Identities=16% Similarity=0.178 Sum_probs=191.6
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh------cCCCeEEEeCcH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPL 87 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l------~~~~~~lvl~P~ 87 (524)
.+.|...+..+.-.+.|++.-.. .-+..+.+-++.+..++-+++++.||+|||. |+|-. ...+.+...-|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCch
Confidence 34455566777777777764332 2234445566667778889999999999994 33321 223556666688
Q ss_pred HHHHHHHHHHHH-HcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEec
Q 009843 88 IALMENQVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (524)
Q Consensus 88 ~~L~~q~~~~l~-~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDE 166 (524)
+.-+.+...+.. ++.+....-.+.....+.. . .+..-+-|+|..++ +.........+.+++||+||
T Consensus 101 rvaamsva~RVadEMDv~lG~EVGysIrfEdC------~--~~~T~Lky~tDgmL-----lrEams~p~l~~y~viiLDe 167 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGEEVGYSIRFEDC------T--SPNTLLKYCTDGML-----LREAMSDPLLGRYGVIILDE 167 (699)
T ss_pred HHHHHHHHHHHHHHhccccchhcccccccccc------C--ChhHHHHHhcchHH-----HHHHhhCcccccccEEEech
Confidence 766666554433 2332221111111111100 0 00111222222222 22334445567789999999
Q ss_pred cccccccCCCCHHHH--HHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEe-eCchh
Q 009843 167 AHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLLD 243 (524)
Q Consensus 167 aH~i~~~g~~fr~~~--~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~-~~~~~ 243 (524)
||.=+ ...+. -.|+.++...|+..+|.||||+...-.. .. ....|.+-......-.++|.-.. ++..+
T Consensus 168 ahERt-----lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq---~y-f~n~Pll~vpg~~PvEi~Yt~e~erDylE 238 (699)
T KOG0925|consen 168 AHERT-----LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ---RY-FGNAPLLAVPGTHPVEIFYTPEPERDYLE 238 (699)
T ss_pred hhhhh-----HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHH---HH-hCCCCeeecCCCCceEEEecCCCChhHHH
Confidence 99732 22221 2356666677899999999998655322 22 22344443333222233332221 12223
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC---------CCceEEEcCCCCHHHHHHHHHHHhc---C--CC
Q 009843 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWIS---S--RK 309 (524)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~---g--~~ 309 (524)
..+..+.++-.....+-++||....++.+..++.+... .+.|..+| +.++..+++--.. | ..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 44444555544455677999999998888887777632 24678888 3333333332221 2 35
Q ss_pred cEEEEcccccccccCCCccEEEEeCC------------------CCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
+|+|+|++++..+-++.|.+||.-++ |-|..+-.||.|||||. .+|+|+-+|+.+
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 79999999999999999999997664 45889999999999998 799999999754
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.66 E-value=5.2e-14 Score=152.89 Aligned_cols=289 Identities=15% Similarity=0.053 Sum_probs=190.3
Q ss_pred EcCCCChHHHHHHHHH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cC-CceeEeccCCCHHHHHHHHHHhhcCCCcccE
Q 009843 59 LMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (524)
Q Consensus 59 ~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~g-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 133 (524)
.+.+|+|||-+|+-.+ +..++.+||++|.++|..|..+.|+. +| .....+++..+..++...|..+..|. .+|
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~I 243 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--ARV 243 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--CcE
Confidence 3346999999997433 56688999999999999999999997 55 67899999999999999999988886 788
Q ss_pred EEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC-CCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHH
Q 009843 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (524)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (524)
+++|.--+..|- .++++|||||-|.-+--. ...+..-+.+..++....+.++|+-|||++-+......
T Consensus 244 ViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 244 VVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred EEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 888887766553 358999999999875422 12334447788888888899999999999987655332
Q ss_pred HHhCC-C--CCeEEeccCCCCcceEEEEee-----C-------chhhHHHHHHHHHHhcCCccEEEEeCcccc-------
Q 009843 213 ESLCL-Q--NPLVLKSSFNRPNLFYEVRYK-----D-------LLDDAYADLCSVLKANGDTCAIVYCLERTT------- 270 (524)
Q Consensus 213 ~~l~l-~--~~~~~~~~~~~~~l~~~v~~~-----~-------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~------- 270 (524)
..... . .+... ....|.+...-... + .....++.+.+.|+ .+ ++|||.|.+..
T Consensus 313 ~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~C~ 387 (665)
T PRK14873 313 SGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLACA 387 (665)
T ss_pred cCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeEhh
Confidence 21100 0 00011 11223332221100 0 11123333444443 34 89999887622
Q ss_pred ----------------------------------------------------HHHHHHHHHhC--CCceEEEcCCCCHHH
Q 009843 271 ----------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKA 296 (524)
Q Consensus 271 ----------------------------------------------------~e~l~~~L~~~--g~~~~~~h~~l~~~~ 296 (524)
++++++.|.+. +.++..+.+
T Consensus 388 ~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~------ 461 (665)
T PRK14873 388 RCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGG------ 461 (665)
T ss_pred hCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEECh------
Confidence 25555665554 334443332
Q ss_pred HHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC------CC------CHHHHHHHHhhcCCCCCCceEEEEecc
Q 009843 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------PK------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (524)
Q Consensus 297 R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~------p~------s~~~y~Q~~GRagR~G~~~~~i~~~~~ 364 (524)
..+++.|. ++.+|||+|+.+..=+. +++..|+..|. |. ...-+.|-+||+||.+.+|.+++.+.+
T Consensus 462 -d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 462 -DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred -HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 34778886 59999999983222222 46788776653 21 344558899999999999999988755
Q ss_pred ccHHHHHHHHH
Q 009843 365 DDRRRMEFILS 375 (524)
Q Consensus 365 ~d~~~~~~l~~ 375 (524)
+. ..++.+..
T Consensus 539 ~~-~~~~~l~~ 548 (665)
T PRK14873 539 SL-PTVQALIR 548 (665)
T ss_pred CC-HHHHHHHh
Confidence 54 34444443
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.63 E-value=1.2e-14 Score=135.27 Aligned_cols=166 Identities=33% Similarity=0.423 Sum_probs=113.8
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcC-----
Q 009843 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKG----- 102 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~g----- 102 (524)
+++..++++|.+++..+..+ +.+++.+|||+|||.++..+++.. ...++|++|+.+++.|+...+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 67789999999999999998 999999999999999887776543 3679999999999999999988755
Q ss_pred CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-hccCCccEEEEeccccccccCCCCHHHH
Q 009843 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (524)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (524)
.....+.+..... .+..+.... ..++++|++.+... +... .....++++|+||+|.+..+. +.
T Consensus 84 ~~~~~~~~~~~~~----~~~~~~~~~--~~v~~~t~~~l~~~-----~~~~~~~~~~~~~iIiDE~h~~~~~~--~~--- 147 (201)
T smart00487 84 KVVGLYGGDSKRE----QLRKLESGK--TDILVTTPGRLLDL-----LENDLLELSNVDLVILDEAHRLLDGG--FG--- 147 (201)
T ss_pred EEEEEeCCcchHH----HHHHHhcCC--CCEEEeChHHHHHH-----HHcCCcCHhHCCEEEEECHHHHhcCC--cH---
Confidence 2233333332221 222233322 36777776644321 1111 234458899999999998642 33
Q ss_pred HHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHh
Q 009843 182 RKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 182 ~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
..+..+.... ++.+++++|||++...........
T Consensus 148 ~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 148 DQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HHHHHHHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3344444444 477899999999877666444443
No 138
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.63 E-value=3.4e-14 Score=149.17 Aligned_cols=319 Identities=20% Similarity=0.199 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHH--HHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009843 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~--~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (524)
++.++|.-.++.+. .+-+.|+.-..|-|||.- ..+..|. ..|.-|||||.-.| +.|.+++.++.-...+.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEEE
Confidence 37889999888754 345678888999999942 1222332 27788999998555 77899999986666666
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
....+..++..+...+......++++++|.-++++..--..+. ...+++++|+||+|.+-+.+.. | |..|-.
T Consensus 478 ~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsfl---k~~~~n~viyDEgHmLKN~~Se-R--y~~LM~-- 549 (941)
T KOG0389|consen 478 PYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFL---KNQKFNYVIYDEGHMLKNRTSE-R--YKHLMS-- 549 (941)
T ss_pred eccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHH---HhccccEEEecchhhhhccchH-H--HHHhcc--
Confidence 6666678888888899999889999999998877643222222 2235899999999999775531 1 222222
Q ss_pred HhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-------------------------------------------
Q 009843 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS------------------------------------------- 225 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~------------------------------------------- 225 (524)
++.-..++||+||-.+....++..|..--|.++..
T Consensus 550 --I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 --INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred --ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 23445889999985543333333222211111100
Q ss_pred -------------------cC--------------------------CCCc--ceEEEE------------eeCc-----
Q 009843 226 -------------------SF--------------------------NRPN--LFYEVR------------YKDL----- 241 (524)
Q Consensus 226 -------------------~~--------------------------~~~~--l~~~v~------------~~~~----- 241 (524)
.. .+++ +....+ +.+.
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 00 0000 000000 0000
Q ss_pred ---------------------------------------------------hhhHHHHHHHHHHh--cCCccEEEEeCcc
Q 009843 242 ---------------------------------------------------LDDAYADLCSVLKA--NGDTCAIVYCLER 268 (524)
Q Consensus 242 ---------------------------------------------------~~~~~~~l~~~l~~--~~~~~~IIf~~s~ 268 (524)
...|+..|..+|.+ ..+.+++||..--
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 00233445555443 2457899999888
Q ss_pred ccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC-C-cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHH
Q 009843 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-K-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (524)
Q Consensus 269 ~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~-~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (524)
...+-|...|...|+....+.|...-.+|+.++..|...+ + -.|.+|.|.|-|||+-..+.||.+|+..++-.=.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 8888888999999999999999999999999999999654 3 3588999999999999999999999999999999999
Q ss_pred hhcCCCCCCce--EEEEeccccH
Q 009843 347 GRAGRDQLPSK--SLLYYGMDDR 367 (524)
Q Consensus 347 GRagR~G~~~~--~i~~~~~~d~ 367 (524)
-||.|.|+... ++-+++.+-.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcH
Confidence 99999998654 4555666644
No 139
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=2e-15 Score=150.93 Aligned_cols=289 Identities=19% Similarity=0.160 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCc---eeEecc
Q 009843 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIA---GEFLSS 110 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~-gi~---~~~~~~ 110 (524)
.+||+|+..+..+..+ ++.+++.|.|+|||++...++..-.+++||++..---++||..+++.. .+. .+..++
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTs 381 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTS 381 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEeec
Confidence 6899999999998743 678999999999999877766666888999998777777877776652 121 222221
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH----HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009843 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (524)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~----~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (524)
... +. ......+++.|.-+++..+.. ..+.+......++++++||+|.+-.. -||.- +..
T Consensus 382 d~K---------e~--~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~--MFRRV---lsi 445 (776)
T KOG1123|consen 382 DAK---------ER--FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK--MFRRV---LSI 445 (776)
T ss_pred ccc---------cc--CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH--HHHHH---HHH
Confidence 110 00 112356888888888754322 22344455566999999999998652 25522 222
Q ss_pred HHHhCCCCCEEEEeccCChhHHH--HH----------HHHhCCCCC--------eEEec-------------cCCCCcce
Q 009843 187 LRNYLPDVPILALTATAAPKVQK--DV----------MESLCLQNP--------LVLKS-------------SFNRPNLF 233 (524)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~--~i----------~~~l~l~~~--------~~~~~-------------~~~~~~l~ 233 (524)
+..+ --++||||+-.+..+ |+ .+|+.+... ..+.. ...+.-+.
T Consensus 446 v~aH----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 446 VQAH----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHHH----hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 2222 246999998554211 00 112211110 00110 11111222
Q ss_pred EEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc-CCCcEE
Q 009843 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQVV 312 (524)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~Vl 312 (524)
|.+.+.. -.....|.++-.. .+.++|||..+.-...+.|-.| |- -+++|..++.+|.++++.|+. ..++-|
T Consensus 522 yvMNP~K--FraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl---~K--pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 522 YVMNPNK--FRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eecCcch--hHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc---CC--ceEECCCchhHHHHHHHhcccCCccceE
Confidence 2222211 1233445444443 5678999997766555555444 22 468899999999999999995 578888
Q ss_pred EEcccccccccCCCccEEEEeCCC-CCHHHHHHHHhhcCCCCC
Q 009843 313 VATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQL 354 (524)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~G~ 354 (524)
+-..+....||+|..+++|..+-- .|..+=.||.||.-|+.+
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 889999999999999999976643 378888999999888743
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.61 E-value=3.2e-14 Score=142.33 Aligned_cols=338 Identities=16% Similarity=0.136 Sum_probs=203.2
Q ss_pred CccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHH--hcCCCe
Q 009843 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPA--LAKPGI 80 (524)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l-~g~d~lv~apTGsGKTl~~~lp~--l~~~~~ 80 (524)
.|.|.+-++.. .+.+-...+++...+-.. =++.+-|+|++.+...+ +|..+++.-..|-|||+-++-.| ......
T Consensus 166 d~lp~~~l~~a-~~~~ea~~~~l~ev~d~k-Lvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp 243 (689)
T KOG1000|consen 166 DPLPQNILGLA-NFKPEAAPSDLNEVMDPK-LVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP 243 (689)
T ss_pred ccccccceehh-ccCCccCHHHHhhccCHH-HHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc
Confidence 34554444444 333333345555553331 23578899999887755 56778888999999998654332 234778
Q ss_pred EEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCcc
Q 009843 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (524)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~ 160 (524)
.|||+|. +|-..|.++|.++--....++-...... .+..-...-.+.++ +...+..+........+.
T Consensus 244 lliVcPA-svrftWa~al~r~lps~~pi~vv~~~~D------~~~~~~t~~~v~iv------Sye~ls~l~~~l~~~~~~ 310 (689)
T KOG1000|consen 244 LLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKSSD------PLPDVCTSNTVAIV------SYEQLSLLHDILKKEKYR 310 (689)
T ss_pred EEEEecH-HHhHHHHHHHHHhcccccceEEEecccC------CccccccCCeEEEE------EHHHHHHHHHHHhcccce
Confidence 8999996 5667788888874211111110000000 00000001223333 344555555666666799
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEE----------------
Q 009843 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL---------------- 223 (524)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~---------------- 223 (524)
++|+||.|.+-+-- . .+.+....... -..+|+||+|+.-.--.++..++..-++..+
T Consensus 311 vvI~DEsH~Lk~sk-t-----kr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~v 384 (689)
T KOG1000|consen 311 VVIFDESHMLKDSK-T-----KRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQV 384 (689)
T ss_pred EEEEechhhhhccc-h-----hhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccc
Confidence 99999999986521 1 11222222111 2348999999732100000000000000000
Q ss_pred ------eccCC------------------------CCcceEEEEeeCc--------------------------------
Q 009843 224 ------KSSFN------------------------RPNLFYEVRYKDL-------------------------------- 241 (524)
Q Consensus 224 ------~~~~~------------------------~~~l~~~v~~~~~-------------------------------- 241 (524)
....+ .|.-...+.....
T Consensus 385 r~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l 464 (689)
T KOG1000|consen 385 RFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLL 464 (689)
T ss_pred ceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHH
Confidence 00000 0000111111000
Q ss_pred -----hhhHHHHHHHHHHh------cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC-CC
Q 009843 242 -----LDDAYADLCSVLKA------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RK 309 (524)
Q Consensus 242 -----~~~~~~~l~~~l~~------~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~ 309 (524)
...|+..+.+++.. .++.+.+|||......+.+...+.+.++....+.|..+..+|...-+.|+.+ ++
T Consensus 465 ~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev 544 (689)
T KOG1000|consen 465 FYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEV 544 (689)
T ss_pred HHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccce
Confidence 00122334444433 3567899999999999999999999999999999999999999999999954 55
Q ss_pred cE-EEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEe
Q 009843 310 QV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (524)
Q Consensus 310 ~V-lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~ 362 (524)
.| +++-.+.++|+++...+.|++..+++++.-.+|.-.|+.|.|+.+.+.++|
T Consensus 545 ~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 545 RVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 54 344568999999999999999999999999999999999999988766655
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=3.4e-13 Score=147.60 Aligned_cols=123 Identities=23% Similarity=0.218 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009843 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (524)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~ 320 (524)
..++..+.+.+.. ..+.|+||-+.|.+..|.|+..|...|++..++++.....+-+.+-+.=+ ...|-|||+++|+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCC
Confidence 4567777766654 36889999999999999999999999999888888765555444443322 3458999999999
Q ss_pred cccCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 321 GIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 321 GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
|-|+. +-=+||-...+.|..---|-.||+||.|.||.+..|++.+|.
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99986 224899999999999999999999999999999999998875
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.59 E-value=4.4e-13 Score=143.97 Aligned_cols=158 Identities=16% Similarity=0.065 Sum_probs=104.2
Q ss_pred CEEEEeccCChhH------HHHHHHHhCCCCC-eEEeccCC----CCc--ceEEEEe------eCc--------------
Q 009843 195 PILALTATAAPKV------QKDVMESLCLQNP-LVLKSSFN----RPN--LFYEVRY------KDL-------------- 241 (524)
Q Consensus 195 ~ii~lSAT~~~~~------~~~i~~~l~l~~~-~~~~~~~~----~~~--l~~~v~~------~~~-------------- 241 (524)
++|+.|||+.-.- ...+.+.+++... ..+.++|+ +.. +.|.-.. .+.
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5889999987643 5778888887543 33445676 334 2232210 111
Q ss_pred --hhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEc
Q 009843 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (524)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VlVaT 315 (524)
.+...+.+..++...++ .++|-+.|....+.+++.|...--....+.|..+ .|...+++|+. |.-.||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~G-~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQG-GTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHcCC-CEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 01134555666665544 6888889999999999999764223345556443 34667888886 478999999
Q ss_pred ccccccccC--------C--CccEEEEeCCCC-------------------------CHHHHHHHHhhcCCCCCC
Q 009843 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP 355 (524)
Q Consensus 316 ~a~~~GiD~--------p--~v~~VI~~~~p~-------------------------s~~~y~Q~~GRagR~G~~ 355 (524)
..|.+|||+ | .++.||...+|. ..-.+.|-+||.=|....
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 999999999 2 378899888873 122346777888877554
No 143
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=5.4e-15 Score=117.52 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 009843 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (524)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (524)
.+++.|+..++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.++.|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009843 353 Q 353 (524)
Q Consensus 353 G 353 (524)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.58 E-value=1.8e-12 Score=143.31 Aligned_cols=165 Identities=17% Similarity=0.162 Sum_probs=103.0
Q ss_pred CEEEEeccCChh-HHHHHHHHhCCCC---C--eEEeccCCCCcc-eEEEEe---eC-ch----hhHHHHHHHHHHhcCCc
Q 009843 195 PILALTATAAPK-VQKDVMESLCLQN---P--LVLKSSFNRPNL-FYEVRY---KD-LL----DDAYADLCSVLKANGDT 259 (524)
Q Consensus 195 ~ii~lSAT~~~~-~~~~i~~~l~l~~---~--~~~~~~~~~~~l-~~~v~~---~~-~~----~~~~~~l~~~l~~~~~~ 259 (524)
.+|++|||+++. ....+...+++.+ . ..+.++|+..+- ...+.. .+ .. ....+.|.+++. .++
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~g- 535 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KHK- 535 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cCC-
Confidence 468888888763 3455667778753 2 223344543222 111111 11 11 123334444555 344
Q ss_pred cEEEEeCccccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEcccccccccCCC--ccEEEE
Q 009843 260 CAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVATVAFGMGIDRKD--VRLVCH 332 (524)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VlVaT~a~~~GiD~p~--v~~VI~ 332 (524)
.++|+++|.+..+.+++.|... +.. ...++. ..|..+++.|++ ++..||++|..|.+|||+|+ ++.||.
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII 611 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVII 611 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEE
Confidence 4899999999999999999753 333 344554 246778877764 67789999999999999987 688998
Q ss_pred eCCCCC------------------------------HHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 333 FNIPKS------------------------------MEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 333 ~~~p~s------------------------------~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
..+|.. .-.+.|-+||.=|.....-.+++.++.
T Consensus 612 ~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 612 TKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 887741 112368889998876543344444433
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=3.2e-15 Score=138.18 Aligned_cols=156 Identities=24% Similarity=0.223 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009843 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~-------g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (524)
+||++|.+++..+.+ .+.+++.||||+|||.++...+......+++++|+.+|.+|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 589999999999884 5789999999999999887544433339999999999999999999664432211110
Q ss_pred CCC-----------HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHH-------HHhhhccCCccEEEEeccccccc
Q 009843 111 TQT-----------MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 111 ~~~-----------~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~-------l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
... ......... .......++.+.+...+........ ..........++||+||||+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKS--ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHH--HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred ccccccccccccccccccccccc--ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 000 000000000 1112235555555543332211100 00112233478999999999754
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
.. . ...+.. +++..+++||||+.
T Consensus 161 ~~-----~---~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 DS-----S---YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp HH-----H---HHHHHH-SSCCEEEEEESS-S
T ss_pred HH-----H---HHHHHc-CCCCeEEEEEeCcc
Confidence 11 1 233333 67778999999985
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=8.4e-13 Score=146.40 Aligned_cols=165 Identities=21% Similarity=0.198 Sum_probs=106.7
Q ss_pred CEEEEeccCChh-HHHHHHHHhCCCCCe---EEeccCCCCcceEEEEee---C-----chhhHHHHHHHHHHhcCCccEE
Q 009843 195 PILALTATAAPK-VQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYK---D-----LLDDAYADLCSVLKANGDTCAI 262 (524)
Q Consensus 195 ~ii~lSAT~~~~-~~~~i~~~l~l~~~~---~~~~~~~~~~l~~~v~~~---~-----~~~~~~~~l~~~l~~~~~~~~I 262 (524)
.+|++|||+.+. ....+...+++.... .+.+.++........... . ...+....+.++++..++ .++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEE
Confidence 588999998775 344456666555443 122223332221111111 1 112333445555555555 799
Q ss_pred EEeCccccHHHHHHHHHhCCCc-eEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEcccccccccCCC--ccEEEEeCCCC-
Q 009843 263 VYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKD--VRLVCHFNIPK- 337 (524)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~VlVaT~a~~~GiD~p~--v~~VI~~~~p~- 337 (524)
||++|.+..+.+++.+...... ....++..+ +...++.|..+.- -++|+|..|.+|||+|+ .+.||..++|.
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999887653 445555544 4477888886544 89999999999999987 47888888774
Q ss_pred -----------------------------CHHHHHHHHhhcCCCCCC-ceEEEEec
Q 009843 338 -----------------------------SMEAFYQESGRAGRDQLP-SKSLLYYG 363 (524)
Q Consensus 338 -----------------------------s~~~y~Q~~GRagR~G~~-~~~i~~~~ 363 (524)
.+....|.+||+=|.-.. |..+++-.
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 345669999999997544 44444433
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.55 E-value=7.1e-15 Score=155.07 Aligned_cols=308 Identities=19% Similarity=0.262 Sum_probs=173.0
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHH--HHhcCCCeEEEeCcHHHHHHHHHHHHHH---cCCceeE
Q 009843 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEF 107 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g----~d~lv~apTGsGKTl~~~l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~---~gi~~~~ 107 (524)
.+|||+|++||+++.+| ...-+.|++|+|||++.+- -++. ..++|+++|.++|..|..+++.. +.+.+..
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-AARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-hhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 48999999999999875 2346778999999988752 2333 48999999999999999998875 2333333
Q ss_pred eccCCCHH-----------------HHHHHHHHhh--cCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEec
Q 009843 108 LSSTQTMQ-----------------VKTKIYEDLD--SGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDE 166 (524)
Q Consensus 108 ~~~~~~~~-----------------~~~~~~~~l~--~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDE 166 (524)
..+..... ....+...+. ......-+++.|... +..+.+ ......+++||.||
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQS------l~~i~eAQe~G~~~fDliicDE 312 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQS------LPRIKEAQEAGLDEFDLIICDE 312 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccc------hHHHHHHHHcCCCCccEEEecc
Confidence 22221110 0011111111 112223344444432 223322 23355699999999
Q ss_pred cccccc---cCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChh---HHHHH----HHHhCCCCCeEEeccCCCCcc----
Q 009843 167 AHCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK---VQKDV----MESLCLQNPLVLKSSFNRPNL---- 232 (524)
Q Consensus 167 aH~i~~---~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~---~~~~i----~~~l~l~~~~~~~~~~~~~~l---- 232 (524)
||+-.. -|.| ...+.++..- ........+.||||+.-- ..... .....|.+..++...|.|-+.
T Consensus 313 AHRTtGa~~a~dd-~saFt~vHs~-~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv 390 (1518)
T COG4889 313 AHRTTGATLAGDD-KSAFTRVHSD-QNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAV 390 (1518)
T ss_pred hhccccceecccC-cccceeecCc-chhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHH
Confidence 999642 1111 1111111000 001123467899997321 10000 001112222222222222111
Q ss_pred ------eEEEEee-----------------CchhhHHHHHHHH-------HHhc--------------CCccEEEEeCcc
Q 009843 233 ------FYEVRYK-----------------DLLDDAYADLCSV-------LKAN--------------GDTCAIVYCLER 268 (524)
Q Consensus 233 ------~~~v~~~-----------------~~~~~~~~~l~~~-------l~~~--------------~~~~~IIf~~s~ 268 (524)
.|.|..- +...-.++...++ .+.. +.+++|-||.+.
T Consensus 391 ~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I 470 (1518)
T COG4889 391 ERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDI 470 (1518)
T ss_pred HhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhh
Confidence 1111110 0000111111111 1111 124678899999
Q ss_pred ccHHHHHHHHH-----------hC--CCc--eEEEcCCCCHHHHHHHHH---HHhcCCCcEEEEcccccccccCCCccEE
Q 009843 269 TTCDELSAYLS-----------AG--GIS--CAAYHAGLNDKARSSVLD---DWISSRKQVVVATVAFGMGIDRKDVRLV 330 (524)
Q Consensus 269 ~~~e~l~~~L~-----------~~--g~~--~~~~h~~l~~~~R~~~~~---~f~~g~~~VlVaT~a~~~GiD~p~v~~V 330 (524)
+...++++.+. +. ++. +....|.|+..+|...+. .|..++++||--...+++|||+|.++.|
T Consensus 471 ~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsV 550 (1518)
T COG4889 471 KTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSV 550 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceE
Confidence 88877765543 22 344 455668899999954443 2335678899888999999999999999
Q ss_pred EEeCCCCCHHHHHHHHhhcCCCC
Q 009843 331 CHFNIPKSMEAFYQESGRAGRDQ 353 (524)
Q Consensus 331 I~~~~p~s~~~y~Q~~GRagR~G 353 (524)
|+++.-.|+-..+|.+||.-|-.
T Consensus 551 iFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 551 IFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred EEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999964
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=3.1e-12 Score=142.33 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=59.9
Q ss_pred HcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHhc----CC--CeEEEeCcHHHHHHHHHHHHHHc
Q 009843 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~lp~l~----~~--~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
.|.|+.++|.|.+.+..+. .++++++.||||+|||++.+.|++. .+ .++++.+.|.+-+.|.+++|++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 5899999999999887654 5789999999999999998888774 23 58999999999999999999883
No 149
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.47 E-value=1.8e-12 Score=141.83 Aligned_cols=306 Identities=19% Similarity=0.259 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcC--CCeEEEeCcHHHHHHHHHHHHHH-----cCCceeEec
Q 009843 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~--~~~~lvl~P~~~L~~q~~~~l~~-----~gi~~~~~~ 109 (524)
.+.|.|.++++.+.+. .++++.+|+|+|||.|+-++.+.. .++++++.|.-+.+..+...+.+ .|....-++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 4588999999887755 568899999999999998887764 67899999999888777666655 244555555
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc-cCCCCHHH--HHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPS--YRKLSS 186 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~-~g~~fr~~--~~~l~~ 186 (524)
+..+.+.+-. . .-++++.||| .+..+. ....++++|+||.|.++. .|.-+.-- .+.+..
T Consensus 1223 ge~s~~lkl~-----~----~~~vii~tpe------~~d~lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1223 GETSLDLKLL-----Q----KGQVIISTPE------QWDLLQ---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred CccccchHHh-----h----hcceEEechh------HHHHHh---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 5444332211 1 1345555555 444442 334589999999999974 22111100 122222
Q ss_pred HHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCc--ceEEEEeeCc--hh--------hHHHHHHHHHH
Q 009843 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN--LFYEVRYKDL--LD--------DAYADLCSVLK 254 (524)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~--l~~~v~~~~~--~~--------~~~~~l~~~l~ 254 (524)
... .+++++++|...+.. .|+ ++.....++..+..+.. +...+..... .. -.+..+....
T Consensus 1285 q~~--k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a- 1356 (1674)
T KOG0951|consen 1285 QLE--KKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA- 1356 (1674)
T ss_pred HHH--hheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh-
Confidence 111 267899999887654 222 56655556654443322 2222222111 11 1222222222
Q ss_pred hcCCccEEEEeCccccHHHHHHHHHhC----------------------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009843 255 ANGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (524)
Q Consensus 255 ~~~~~~~IIf~~s~~~~e~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~Vl 312 (524)
..+.+++||+++++.|..++..|-.. .++..+=|-+++..+...+...|..|.++|+
T Consensus 1357 -~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~ 1435 (1674)
T KOG0951|consen 1357 -GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVC 1435 (1674)
T ss_pred -cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEE
Confidence 24678999999999998776443210 1112222899999999999999999999999
Q ss_pred EEcccccccccCCCccEEEEe-----------CCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHH
Q 009843 313 VATVAFGMGIDRKDVRLVCHF-----------NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~-----------~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~ 375 (524)
|...- -+|+-.. ...||-+ -.+.+..+..|+.|+|.| .|.|+++....+....+..+.
T Consensus 1436 v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1436 VMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred EEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 98766 6666543 3344422 245679999999999998 478999998887776665543
No 150
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.39 E-value=2.8e-11 Score=132.54 Aligned_cols=311 Identities=14% Similarity=0.103 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEcCCCChHHHHHH-HHHh---cC--------CCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQ-IPAL---AK--------PGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l--~--g~d~lv~apTGsGKTl~~~-lp~l---~~--------~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
.+|.||.+.++.+. . +-+.+++-..|-|||+-.+ +-|. .+ .-..|||||. +|.--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46789999988753 2 3467999999999997422 1111 11 2238999995 7888899999886
Q ss_pred CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH
Q 009843 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (524)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (524)
.-....+....+..++........ +..+++.+.+++.+ +...+.. ..+.++|+||-|-+-+- -
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~----~~~iiVtSYDv~Rn-----D~d~l~~-~~wNYcVLDEGHVikN~-------k 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYK----NANIIVTSYDVVRN-----DVDYLIK-IDWNYCVLDEGHVIKNS-------K 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhcc----ccceEEeeHHHHHH-----HHHHHHh-cccceEEecCcceecch-------H
Confidence 433333444445555544433332 25677777776543 2222222 23889999999987541 1
Q ss_pred HHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCC-------------------------------------------
Q 009843 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ------------------------------------------- 218 (524)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~------------------------------------------- 218 (524)
.++....+.+..-..+.||+|+-.+...+++..+..-
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 4444445555555688999998443222222211110
Q ss_pred -------------------CCeEEe------------------------------ccCCCCc---------ceE------
Q 009843 219 -------------------NPLVLK------------------------------SSFNRPN---------LFY------ 234 (524)
Q Consensus 219 -------------------~~~~~~------------------------------~~~~~~~---------l~~------ 234 (524)
.|.++. .+....+ +.|
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 010000 0000000 000
Q ss_pred ----EEEeeC-c-------------------hhhHHHHHHHHHHhc----------------CCccEEEEeCccccHHHH
Q 009843 235 ----EVRYKD-L-------------------LDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (524)
Q Consensus 235 ----~v~~~~-~-------------------~~~~~~~l~~~l~~~----------------~~~~~IIf~~s~~~~e~l 274 (524)
....+. . ...|+..|.++|.+. .+.+++|||.-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 000000 0 013445566666542 234799999999999999
Q ss_pred HHHHHhCCC-ce--EEEcCCCCHHHHHHHHHHHhcC-CCcEEE-EcccccccccCCCccEEEEeCCCCCHHHHHHHHhhc
Q 009843 275 SAYLSAGGI-SC--AAYHAGLNDKARSSVLDDWISS-RKQVVV-ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (524)
Q Consensus 275 ~~~L~~~g~-~~--~~~h~~l~~~~R~~~~~~f~~g-~~~VlV-aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRa 349 (524)
.+.|.+... .+ ..+.|..++.+|.++.++|.++ .++||+ +|.+.|-|+|+-+.+.||++.=.+++-.=.|...||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 888866532 33 3788999999999999999998 888865 568899999999999999999999999999999999
Q ss_pred CCCCCCceEEE--Eecccc
Q 009843 350 GRDQLPSKSLL--YYGMDD 366 (524)
Q Consensus 350 gR~G~~~~~i~--~~~~~d 366 (524)
.|-|+.-.+-+ ++..+-
T Consensus 1437 HRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred HhhcCceeeeeeeehhccc
Confidence 99998776533 345443
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.37 E-value=7.1e-12 Score=135.01 Aligned_cols=311 Identities=20% Similarity=0.223 Sum_probs=216.0
Q ss_pred CCCHHHHHHHHHHHc---C-CCEEEEcCCCChHHH------HHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009843 38 QFRDKQLDAIQAVLS---G-RDCFCLMPTGGGKSM------CYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~---g-~d~lv~apTGsGKTl------~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (524)
.+++||.+.++.+.+ + -+.++.-.+|-|||. +|++-.....|.-+||+|+-.|.+ |..++..-.-....
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccceee
Confidence 789999999988763 2 356777899999995 344444555888999999988876 45555554445556
Q ss_pred eccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009843 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (524)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (524)
+....+...+......+..++ +.+|..|.|.+..+ .++..+ .+.++||||.|.+..-- -+|..
T Consensus 473 i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~lLsKI-------~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKALLSKI-------SWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHHHHhcc-------CCcceeecccccccchh-------hHHHH
Confidence 666777888888888888876 88999999977664 232222 37789999999997521 33333
Q ss_pred HHH-hCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc------CCCC-----------------------------
Q 009843 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNRP----------------------------- 230 (524)
Q Consensus 187 l~~-~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~------~~~~----------------------------- 230 (524)
-.. .+.....+++|+|+..+....++..|+..-|.++.+. |+.|
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 333 3334457889999876665555555555444444210 0000
Q ss_pred ----------------------------------------------------------------------cceEEE----
Q 009843 231 ----------------------------------------------------------------------NLFYEV---- 236 (524)
Q Consensus 231 ----------------------------------------------------------------------~l~~~v---- 236 (524)
.++-.+
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 000000
Q ss_pred --EeeC----chhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC
Q 009843 237 --RYKD----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (524)
Q Consensus 237 --~~~~----~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (524)
.... ....+++.|..++-+ ..+.+++.|+.-..-..-+..+|.-.++....+.|....++|...++.|....
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 0000 000122222222221 13557888887777777788888888888999999999999999999999654
Q ss_pred C---cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 309 K---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 309 ~---~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
. -.|.+|-+.|.|+|..-...||.||--+++-...|+--||.|-|+...+-++....
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 3 36889999999999999999999999999999999999999999988777665433
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.37 E-value=3.8e-12 Score=111.34 Aligned_cols=135 Identities=31% Similarity=0.365 Sum_probs=87.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC---CceeEeccCCCHHHHHHHHHHhh
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~l~ 125 (524)
+.+++.+|||+|||..+...+.. ..++++|++|+..|.+|+.+.+.... +............... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999887655543 35899999999999999998887754 5666655554433322 111
Q ss_pred cCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccC
Q 009843 126 SGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (524)
Q Consensus 126 ~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~ 203 (524)
. ....++++|++.+.. .+.. ......++++||||+|.+.... +.... ........+..+++++|||+
T Consensus 77 ~--~~~~i~i~t~~~~~~-----~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 S--GKTDIVVGTPGRLLD-----ELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred c--CCCCEEEECcHHHHH-----HHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 1 236677777764432 1111 1123458899999999997632 11111 12233345578899999996
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.36 E-value=7.3e-11 Score=130.17 Aligned_cols=92 Identities=25% Similarity=0.250 Sum_probs=72.3
Q ss_pred EEEEeCccccHHHHHHHHHhC----C--CceEEEcCCCCHHHHHHHHHHH----------------------hc----CC
Q 009843 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 308 (524)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f----------------------~~----g~ 308 (524)
++|-.++++.+-.++..|... + +.+.+||+......|..+++.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 688888999999998888754 2 4578899999888877666543 11 36
Q ss_pred CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC
Q 009843 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (524)
Q Consensus 309 ~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~ 355 (524)
.-|+|||++.+.|+|+ |.+.+ +.-|.++.+.+|++||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~--~~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWA--IADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCee--eeccCcHHHHHHHhhcccccccC
Confidence 6899999999999996 34444 45678899999999999998763
No 154
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.29 E-value=1.1e-09 Score=118.75 Aligned_cols=324 Identities=20% Similarity=0.179 Sum_probs=199.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHH----H
Q 009843 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGL----K 99 (524)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l----~ 99 (524)
.++-++++|...+. .| .+-.+.-...-++-|-||-||||+..+|+... +..+.||+..--|+.--.+++ .
T Consensus 70 REa~~Rvlg~~~~d-VQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 70 REASKRVLGMRHFD-VQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred hHHHHHhcCCChhh-HH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 34455666764333 44 44444444456999999999999999998653 667788888788877544443 3
Q ss_pred HcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-----
Q 009843 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS----- 171 (524)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~----- 171 (524)
.+|+.+....+.....++...+. .++.|+|---++-.-....+ .....+..+.+.|+||++.+.
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEAR 218 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEAR 218 (822)
T ss_pred HcCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccc
Confidence 37999999999998888877765 66777776544443222222 111223346677777777663
Q ss_pred -----ccCCCCH-HHHHHHHHHHHhCC-----------------------------------------------------
Q 009843 172 -----SWGHDFR-PSYRKLSSLRNYLP----------------------------------------------------- 192 (524)
Q Consensus 172 -----~~g~~fr-~~~~~l~~l~~~~~----------------------------------------------------- 192 (524)
.|..+.+ ..|..+..+...+.
T Consensus 219 tPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~ 298 (822)
T COG0653 219 TPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHI 298 (822)
T ss_pred cceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHH
Confidence 1211111 11222222211100
Q ss_pred -----------C------------------------------------------------------CCEEEEeccCChhH
Q 009843 193 -----------D------------------------------------------------------VPILALTATAAPKV 207 (524)
Q Consensus 193 -----------~------------------------------------------------------~~ii~lSAT~~~~~ 207 (524)
+ ..+.+||+|+..+.
T Consensus 299 l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~ 378 (822)
T COG0653 299 LFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE 378 (822)
T ss_pred HhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh
Confidence 0 01333444433322
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCcceEEEEe--eCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCC
Q 009843 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (524)
Q Consensus 208 ~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 283 (524)
. ....+-.-.++..+.++|.+...... -.....++..+.+.++. ..++|+||-+.+.+..|.+.+.|.+.|+
T Consensus 379 ~----EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i 454 (822)
T COG0653 379 E----EFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGI 454 (822)
T ss_pred h----hhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCC
Confidence 1 11122223344556666666432211 11224566666666654 4678999999999999999999999999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCcc-----------EEEEeCCCCCHHHHHHHHhhcCCC
Q 009843 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRD 352 (524)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~-----------~VI~~~~p~s~~~y~Q~~GRagR~ 352 (524)
+-.++.+.-...+=+.+.+.-+ ..-|-|||+++|+|-|+.--. +||-...-.|..-=-|-.||+||.
T Consensus 455 ~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQ 532 (822)
T COG0653 455 PHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQ 532 (822)
T ss_pred CceeeccccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccC
Confidence 9878888766444333333222 234789999999999974221 455555555666667999999999
Q ss_pred CCCceEEEEeccccH
Q 009843 353 QLPSKSLLYYGMDDR 367 (524)
Q Consensus 353 G~~~~~i~~~~~~d~ 367 (524)
|.||.+..|.+.+|.
T Consensus 533 GDpG~S~F~lSleD~ 547 (822)
T COG0653 533 GDPGSSRFYLSLEDD 547 (822)
T ss_pred CCcchhhhhhhhHHH
Confidence 999999999887764
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.15 E-value=3.5e-09 Score=110.73 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=81.6
Q ss_pred EEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc--CCCcEE-EEcccccccccCCCccEEEEeCCCC
Q 009843 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS--SRKQVV-VATVAFGMGIDRKDVRLVCHFNIPK 337 (524)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~Vl-VaT~a~~~GiD~p~v~~VI~~~~p~ 337 (524)
++|...-.....-+...|++.|.....+||....++|+.+.+.|.. |..+|+ ++-.+-|.|+|+-..+++|..|+-+
T Consensus 749 ~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHW 828 (901)
T KOG4439|consen 749 VVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHW 828 (901)
T ss_pred eeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEeccc
Confidence 3333333333344556777788899999999999999999999994 556665 4557889999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCceEEEE
Q 009843 338 SMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 338 s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
++.-=-|...|.-|.|+...++++
T Consensus 829 NPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 829 NPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CHHHHHHHHHHHHHhcccCceEEE
Confidence 999999999999999998776655
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.10 E-value=3.8e-09 Score=110.27 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=91.2
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCc-EEEEcccccccccCCCccEEEEeCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ-VVVATVAFGMGIDRKDVRLVCHFNI 335 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~-VlVaT~a~~~GiD~p~v~~VI~~~~ 335 (524)
++.++++|+.--+..+-+.++|.-.|+....+.|.....+|..+..+|+..++- .|.+|-+.|.|||+-..+.||+|+-
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 345678888777777888888888889999999999999999999999986654 5789999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCCceEEE
Q 009843 336 PKSMEAFYQESGRAGRDQLPSKSLL 360 (524)
Q Consensus 336 p~s~~~y~Q~~GRagR~G~~~~~i~ 360 (524)
.+++..-.|...||.|-|+...+.+
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceee
Confidence 9999999999999999998665433
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.10 E-value=1.3e-08 Score=110.02 Aligned_cols=283 Identities=17% Similarity=0.231 Sum_probs=164.9
Q ss_pred EEEEcCCCChHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcc
Q 009843 56 CFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (524)
.++.+|.|+|||....-+.- ....++++|+-.++|+.+...+++..++............. +. +. .+
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i~-~~-~~ 122 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------ID-GR-PY 122 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------cc-cc-cc
Confidence 57889999999966433221 23689999999999999999999987764222111111000 00 00 13
Q ss_pred cEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH----HHHhCC-CCCEEEEeccCChh
Q 009843 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS----LRNYLP-DVPILALTATAAPK 206 (524)
Q Consensus 132 ~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~----l~~~~~-~~~ii~lSAT~~~~ 206 (524)
+-+.++.+.+. ++. ....+..++|||||+-.+.. |-|-+..+++.. +...+. ...+|++-||+...
T Consensus 123 ~rLivqIdSL~------R~~-~~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 123 DRLIVQIDSLH------RLD-GSLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred CeEEEEehhhh------hcc-cccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 33333333221 111 11123489999999987754 223333333222 222222 33489999999998
Q ss_pred HHHHHHHHhCCCCCeEEeccCCCCcce-----E-----------EEEee-----------------------CchhhHHH
Q 009843 207 VQKDVMESLCLQNPLVLKSSFNRPNLF-----Y-----------EVRYK-----------------------DLLDDAYA 247 (524)
Q Consensus 207 ~~~~i~~~l~l~~~~~~~~~~~~~~l~-----~-----------~v~~~-----------------------~~~~~~~~ 247 (524)
..+.+...-+-.+-.++..++..++.. . ..... .....-+.
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 877655533322222332221111110 0 00000 00011122
Q ss_pred HHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCc
Q 009843 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327 (524)
Q Consensus 248 ~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v 327 (524)
.|..-|. .+..+-||+.|...++.+++..+..+..+..+++.-+..+ + +.| ++.+|++=|+++..|+++.+.
T Consensus 274 ~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 274 ELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchh
Confidence 2322222 4567889999999999999999888888999988766552 2 334 368999999999999998665
Q ss_pred cE--EEEe--CCC--CCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 328 RL--VCHF--NIP--KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 328 ~~--VI~~--~~p--~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
.| |.-| ... .++.+.+|.+||+ |.=.....+++++..
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 43 3333 222 4677899999999 443456667776544
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.02 E-value=2.1e-07 Score=95.90 Aligned_cols=297 Identities=16% Similarity=0.188 Sum_probs=183.8
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCce-eEecc----------------CCC---HHHHHHHHHHhhcCCC--------
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAG-EFLSS----------------TQT---MQVKTKIYEDLDSGKP-------- 129 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~-~~~~~----------------~~~---~~~~~~~~~~l~~~~~-------- 129 (524)
.++||||+|++.-+.+.++.|.++.-.. ...+- ... ...+..-+..+-.|+.
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5789999999999999999887743221 00000 000 0000111222222221
Q ss_pred -----cccE---EEeCcccccChh-hHHHHH-------hhhccCCccEEEEeccccccc--cCCCCHHHH----------
Q 009843 130 -----SLRL---LYVTPELTATPG-FMSKLK-------KIHSRGLLNLVAIDEAHCISS--WGHDFRPSY---------- 181 (524)
Q Consensus 130 -----~~~l---l~~tpe~v~t~~-~~~~l~-------~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~---------- 181 (524)
.+++ .|.+..++++|- +...+. ....++.+.++|||.||.+.- |.|- ..-+
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv-~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHV-LHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHH-HHHHHHhccCCCCC
Confidence 1111 244556777773 332232 122345588999999999863 5431 0000
Q ss_pred --HHHHHHHHhCC------CCCEEEEeccCChhHHHHHHHHhCCCC-CeEEecc-----------CCCCcceEEEEeeC-
Q 009843 182 --RKLSSLRNYLP------DVPILALTATAAPKVQKDVMESLCLQN-PLVLKSS-----------FNRPNLFYEVRYKD- 240 (524)
Q Consensus 182 --~~l~~l~~~~~------~~~ii~lSAT~~~~~~~~i~~~l~l~~-~~~~~~~-----------~~~~~l~~~v~~~~- 240 (524)
..+..++..+- -.|.|++|+..+|+...-+........ .+.+... ..-++++..+....
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 00111111111 258999999999987665554222111 1111111 11122222222111
Q ss_pred --chhhHHHH----HHHHHH-hcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 241 --LLDDAYAD----LCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 241 --~~~~~~~~----l~~~l~-~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
..+..++. ++.-+. ......+|||++|.-+--.+.++|++.++..+.+|--.+..+-.+.-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 11223322 222333 44556799999999999999999999999999999999999999999999999999999
Q ss_pred Eccc--ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC------CceEEEEeccccHHHHHHHHH
Q 009843 314 ATVA--FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL------PSKSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 314 aT~a--~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~------~~~~i~~~~~~d~~~~~~l~~ 375 (524)
-|.- +=+-..+.+++.||.|++|..+.-|-..++-.+.... ...|.++|+.-|.-+++.++-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 9974 4455678889999999999999888777765555433 578999999999988888773
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.96 E-value=6.4e-08 Score=97.68 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=84.7
Q ss_pred cEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEcccccccccCCCccEEEEeCCCC
Q 009843 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQV-VVATVAFGMGIDRKDVRLVCHFNIPK 337 (524)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~V-lVaT~a~~~GiD~p~v~~VI~~~~p~ 337 (524)
+.|||..--...+-+.-.|.+.|+.++-+-|+|++..|...++.|++. .++| ||+-.+.|..+|+-....|+.+|.=+
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 456665555555556666777899999999999999999999999975 5554 67778899999999999999999888
Q ss_pred CHHHHHHHHhhcCCCCC--CceEEEEeccc
Q 009843 338 SMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (524)
Q Consensus 338 s~~~y~Q~~GRagR~G~--~~~~i~~~~~~ 365 (524)
++.--.|.-.|..|-|+ |=.++-|.-.+
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999999999999987 34455555433
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.94 E-value=8e-08 Score=110.40 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=99.2
Q ss_pred HHHHHHHHH-Hh--cCCc--cEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEccc
Q 009843 245 AYADLCSVL-KA--NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVA 317 (524)
Q Consensus 245 ~~~~l~~~l-~~--~~~~--~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~VlVaT~a 317 (524)
+...+.+++ .. ..+. +++||.......+-+...|...++....++|+++.+.|...++.|.++ ..-++++|.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 344444555 21 2344 799999999999999999999998899999999999999999999986 4446677789
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
.|.|+|.-....||++|..+++....|...|+.|.|+...+.++
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999999999999999999999999999999988766555
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.94 E-value=4.4e-09 Score=105.01 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=93.8
Q ss_pred HHHHHHHHHHc-------------CCCEEEEcCCCChHHHHHHHHHh--c-C--C---CeEEEeCcHHHHHHHHHHHHHH
Q 009843 42 KQLDAIQAVLS-------------GRDCFCLMPTGGGKSMCYQIPAL--A-K--P---GIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 42 ~Q~~~i~~~l~-------------g~d~lv~apTGsGKTl~~~lp~l--~-~--~---~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
+|.+++..++. .+.+++.-.+|.|||+..+.-+. . . . ..+|||+|. ++..+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 57888776632 24678888999999987654332 1 1 1 259999999 888999999998
Q ss_pred cC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccccc---ChhhHHHHHhhhccCCccEEEEecccccccc
Q 009843 101 KG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (524)
Q Consensus 101 ~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~---t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (524)
.. .......+.. ..............++++|.+.+. .+.....+.. ..+++||+||+|.+...
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 64 2333333333 111112223345778888888766 1222222322 23899999999999654
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCC
Q 009843 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 218 (524)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~ 218 (524)
+ .........+....+++||||+......++...+.+-
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L 187 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFL 187 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHH
T ss_pred c-------ccccccccccccceEEeeccccccccccccccchhee
Confidence 3 2223333335566689999999887777777666543
No 162
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.92 E-value=8.5e-08 Score=105.03 Aligned_cols=120 Identities=17% Similarity=0.203 Sum_probs=100.3
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC-C-cEEEEcccccccccCCCccEEEEeC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-K-QVVVATVAFGMGIDRKDVRLVCHFN 334 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~-~VlVaT~a~~~GiD~p~v~~VI~~~ 334 (524)
.+.++|||+.-.+..+-|...|.-+|+-...+.|...-++|+...++|..+. + -.|.+|-.-|.|||+-..+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 3567999999999999999999999999999999999999999999999764 2 3578899999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
-.+++..-.|.--|+.|-|+--.+.+|---++...-+.|+++
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhh
Confidence 999999999999999999987766655444444333445544
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.92 E-value=1.4e-09 Score=94.01 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=72.4
Q ss_pred cCCCEEEEcCCCChHHHHHH----HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcC
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ----IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~----lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 127 (524)
+|+-.++-+.+|+|||--.+ .-++.+++++||+.|||.++....+.|+...+ .+......... .+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~--~~~t~~~~~~~---------~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPV--RFHTNARMRTH---------FG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSE--EEESTTSS-------------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCc--ccCceeeeccc---------cC
Confidence 34556888999999996432 22456799999999999999999999976543 33222221100 11
Q ss_pred CCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChh
Q 009843 128 KPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (524)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (524)
. . +..+.+.+ +...+..-.....+++||+||||....+.--+|... ..+ ..-....+|+||||++-.
T Consensus 72 ~--~------~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l---~~~-~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 S--S------IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYL---REL-AESGEAKVIFMTATPPGS 139 (148)
T ss_dssp S--S------SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHH---HHH-HHTTS-EEEEEESS-TT-
T ss_pred C--C------cccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeH---HHh-hhccCeeEEEEeCCCCCC
Confidence 1 1 11333433 333344444456799999999999655443233222 222 223356799999999765
Q ss_pred H
Q 009843 207 V 207 (524)
Q Consensus 207 ~ 207 (524)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 3
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.79 E-value=5.6e-07 Score=97.06 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=93.5
Q ss_pred HHHHHHh--cCCccEEEEeCccccHHHHHHHHHh----------------------CCCceEEEcCCCCHHHHHHHHHHH
Q 009843 249 LCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDW 304 (524)
Q Consensus 249 l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f 304 (524)
|+++|+. .-+.+.|||..|.....-+..+|.- .|.....+.|.....+|+...+.|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 5555543 2367899999999998888887752 133567788999999999999999
Q ss_pred hcCC-C---cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 305 ISSR-K---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 305 ~~g~-~---~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
.+-. . -.||+|-|.+.|||+-..+.||.||..+++.--.|-+=|+-|.|+..-|++|
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9632 2 2699999999999999999999999999999999999999999997777766
No 165
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.74 E-value=7.8e-08 Score=93.20 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++.+|+ .|++.|.-++-++.+|+ ++.+.||-|||++..+|+.. .+..|-|++....|+..-.+.+..
T Consensus 66 ~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 34455567776 68899999888887776 99999999999998888764 377788889989999877766554
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh---hccCCccEEEEecccccc
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~---~~~~~l~~iViDEaH~i~ 171 (524)
+|+.+.......+...+...+. .+|.|+|..-++-.-+...+... .....+.++||||||.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7999999999888777766655 67999988765443333333211 113568999999999984
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.54 E-value=9.2e-06 Score=92.88 Aligned_cols=281 Identities=20% Similarity=0.183 Sum_probs=148.2
Q ss_pred CCEEEEcCCCChHHHHHHHHH-----hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCC
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~-----l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (524)
+..++.=-||||||++-...| +...+.+++|+-.+.|-.|..+.+..++..........+..+. .+.+..+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~L---k~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSEL---KELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHH---HHHHhcCC
Confidence 457888899999998754322 2347899999999999999999999876443332222333332 23333332
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHH
Q 009843 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (524)
Q Consensus 129 ~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~ 208 (524)
-.++++|-..+.....- . ......+.=-+||+||||+ ++.| ..-..+...+++...++||+||...--
T Consensus 351 --~~ii~TTIQKf~~~~~~-~-~~~~~~~~~ivvI~DEaHR-SQ~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 351 --GKIIVTTIQKFNKAVKE-D-ELELLKRKNVVVIIDEAHR-SQYG-------ELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred --CcEEEEEecccchhhhc-c-cccccCCCcEEEEEechhh-cccc-------HHHHHHHHHhccceEEEeeCCcccccc
Confidence 34555544333221100 0 0001112233689999998 6656 223445778889999999999854322
Q ss_pred HHH-HHHhCCCCCeEE--eccCCCC---cceEEEE-eeCch-----------h---------------------------
Q 009843 209 KDV-MESLCLQNPLVL--KSSFNRP---NLFYEVR-YKDLL-----------D--------------------------- 243 (524)
Q Consensus 209 ~~i-~~~l~l~~~~~~--~~~~~~~---~l~~~v~-~~~~~-----------~--------------------------- 243 (524)
..- ....+ ..-..+ ....... .+.|... ..+.. +
T Consensus 419 ~~tt~~~fg-~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 497 (962)
T COG0610 419 KDTTKDVFG-DYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAML 497 (962)
T ss_pred ccchhhhhc-ceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcc
Confidence 210 00000 000000 0000000 1222221 00000 0
Q ss_pred -----hHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCC-----------------------ceEEEcCCCC
Q 009843 244 -----DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI-----------------------SCAAYHAGLN 293 (524)
Q Consensus 244 -----~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~-----------------------~~~~~h~~l~ 293 (524)
.....+.+..+. ..+.++.+.+.+++.+..+++....... .....|....
T Consensus 498 ~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 577 (962)
T COG0610 498 AVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLK 577 (962)
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHH
Confidence 001112211111 2344677777777755555444332100 0000122222
Q ss_pred HHHHHHHHHHH--hcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 009843 294 DKARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (524)
Q Consensus 294 ~~~R~~~~~~f--~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (524)
.. +.....+| .+...++||.++++-.|.|-|.+. .+-.|-|.--=..+|.+-|+.|.
T Consensus 578 ~~-~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DE-KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HH-HhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccC
Confidence 22 22333332 356899999999999999999655 45567777777889999999996
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.50 E-value=6.5e-07 Score=88.89 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHhc----CCC-----eEEEeCcHHHHHHHHHHHHHH
Q 009843 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~----~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~-----~~lvl~P~~~L~~q~~~~l~~ 100 (524)
|.|. +||.|.+.+.. +.+|.++++.||||+|||+++++|++. ... +++|+++|.++.+|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 7776 59999995544 556889999999999999999999873 233 799999999999998888887
Q ss_pred cCCceeEe
Q 009843 101 KGIAGEFL 108 (524)
Q Consensus 101 ~gi~~~~~ 108 (524)
...+..+.
T Consensus 84 ~~~~~~~~ 91 (289)
T smart00488 84 LMQKVEYE 91 (289)
T ss_pred ccccccee
Confidence 64433333
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.50 E-value=6.5e-07 Score=88.89 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=58.8
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHhc----CCC-----eEEEeCcHHHHHHHHHHHHHH
Q 009843 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~----~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~-----~~lvl~P~~~L~~q~~~~l~~ 100 (524)
|.|. +||.|.+.+.. +.+|.++++.||||+|||+++++|++. ... +++|+++|.++.+|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 7776 59999995544 556889999999999999999999873 233 799999999999998888887
Q ss_pred cCCceeEe
Q 009843 101 KGIAGEFL 108 (524)
Q Consensus 101 ~gi~~~~~ 108 (524)
...+..+.
T Consensus 84 ~~~~~~~~ 91 (289)
T smart00489 84 LMQKVEYE 91 (289)
T ss_pred ccccccee
Confidence 64433333
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.27 E-value=5.9e-06 Score=89.13 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=84.3
Q ss_pred CccEEEEeCccccHHHHHHHHHhC-------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEE
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~V 330 (524)
.+.+++|..--...-.|...|... .......|+.+...+..++.+....|..++|+.|.+...-|.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 456788887777666666666542 2467889999988888888888889999999999999999999898888
Q ss_pred EEeCCCC------------------CHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 331 CHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 331 I~~~~p~------------------s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
|..+.-+ |.....|+.||+||. ++|.|..+.+..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 8555332 677789999999997 688888776543
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.1e-05 Score=82.75 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=94.4
Q ss_pred ccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc--ccccccCCCccEEEEeCCC
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNIP 336 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a--~~~GiD~p~v~~VI~~~~p 336 (524)
.-++||.++.-+--.+.+++++.++..+.+|.-.+...-.+.-+.|..|...||+-|.- +=+--++.+|+.||.|.+|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 34799999999999999999999888777776666666667778899999999999964 5566789999999999999
Q ss_pred CCHHHH---HHHHhhcCCCC----CCceEEEEeccccHHHHHHHHH
Q 009843 337 KSMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 337 ~s~~~y---~Q~~GRagR~G----~~~~~i~~~~~~d~~~~~~l~~ 375 (524)
..+.-| +-+.+|+.-.| ....|.++|+.-|.-++..++-
T Consensus 633 ~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 633 NNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 988766 55556654333 3467999999999988887763
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.15 E-value=3.7e-05 Score=86.05 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 009843 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (524)
Q Consensus 308 ~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (524)
.++.|++-+++.+|.|.|++=.+.-..-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999888999999999999984
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.12 E-value=2.3e-07 Score=101.45 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHc----CCceeE
Q 009843 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEK----GIAGEF 107 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~-g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~ 107 (524)
.+.|.|...+..... ..++++-+|||+|||++|.+..... ..++++++|..+|+..-++.+... |++..-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 456666666544332 3567899999999999998776543 679999999999998777666552 555555
Q ss_pred eccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
+.+....+.. .+ ....+++.|||.... ....+........++++|+||.||+.+
T Consensus 1007 ~tgd~~pd~~-----~v----~~~~~~ittpek~dg--i~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-----AV----READIVITTPEKWDG--ISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred ccCccCCChh-----he----ecCceEEcccccccC--ccccccchhhhccccceeecccccccC
Confidence 5544433211 11 125677888885432 111222222334588999999999875
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.12 E-value=6.7e-06 Score=74.86 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=75.2
Q ss_pred HHHHHhcCCccEEEEeCccccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccccCC
Q 009843 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (524)
Q Consensus 250 ~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~--a~~~GiD~p 325 (524)
.++++..+ +.++||++|.+..+.+.+.+...+. ....+.- +..++..+++.|++++-.||+|+. .+.+|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34455544 6799999999999999999987642 1122332 245678899999999999999999 999999999
Q ss_pred C--ccEEEEeCCCC----C--------------------------HHHHHHHHhhcCCCCCCceEEEEecc
Q 009843 326 D--VRLVCHFNIPK----S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 364 (524)
Q Consensus 326 ~--v~~VI~~~~p~----s--------------------------~~~y~Q~~GRagR~G~~~~~i~~~~~ 364 (524)
+ ++.||..++|. + +....|.+||+-|....--++++.+.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 6 78999999884 1 11227889999998765444444443
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.94 E-value=0.00043 Score=77.44 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=46.2
Q ss_pred cEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH-HHHHHHhCCCCCEEEEeccCChh----
Q 009843 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPK---- 206 (524)
Q Consensus 132 ~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~-l~~l~~~~~~~~ii~lSAT~~~~---- 206 (524)
.++++||-++... .|........+..+||||||.+..... |.- +..+++..+..=+.+|||.|..-
T Consensus 9 gi~~~T~rIl~~D----lL~~ri~~~~itgiiv~~Ahr~~~~~~-----eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 9 GIFSITSRILVVD----LLTGIIPPELITGILVLRADRIIESSQ-----EAFILRLYRQKNKTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred CEEEEechhhHhH----HhcCCCCHHHccEEEEeeccccccccc-----HHHHHHHHHHhCCCcceEEecCCCcccccch
Confidence 4677777665432 234455566689999999999964211 222 23344444444488999998652
Q ss_pred -HHHHHHHHhCCC
Q 009843 207 -VQKDVMESLCLQ 218 (524)
Q Consensus 207 -~~~~i~~~l~l~ 218 (524)
-...+++.|++.
T Consensus 80 ~~l~~vmk~L~i~ 92 (814)
T TIGR00596 80 SPLETKMRNLFLR 92 (814)
T ss_pred HHHHHHHHHhCcC
Confidence 234445555443
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.90 E-value=9.5e-05 Score=72.21 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEcCCCChHHHHHH---HHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 38 QFRDKQLDAIQAVLS----------GRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~----------g~d~lv~apTGsGKTl~~~---lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
.+...|.|++-.+.+ +...++--.||.||--... +-...+ ..+.|+++....|..|..+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 578899998866542 2335555699999985322 222233 44699999999999999999998765
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccCh--------hhHHHHHhhhccCCccEEEEeccccccccCC
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~--------~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (524)
.............. .......-++++|.-.+... .++..+.+-.....=.+||+||||....-..
T Consensus 117 ~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 43322222111000 00111234666666544322 1233332222222235899999999865321
Q ss_pred C---CHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 176 ~---fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
. -...=.....+.+.+|+.+++..|||...+.
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 1 0111134556788999999999999976543
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.71 E-value=0.00013 Score=68.23 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHH--HHHh-cCCCeEEEeCcHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~--d~lv~apTGsGKTl~~~--lp~l-~~~~~~lvl~P~~~L~~q 93 (524)
+|++.|++++..++.+. -.++.+|.|+|||.+.. ..++ ..+..+++++||...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHH
Confidence 47889999999997654 36778999999996532 1122 236789999999877665
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.63 E-value=0.0041 Score=67.85 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCC--CCc-----------eEEEEeccccHHHHHHH
Q 009843 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPS-----------KSLLYYGMDDRRRMEFI 373 (524)
Q Consensus 307 g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G--~~~-----------~~i~~~~~~d~~~~~~l 373 (524)
...+.|++-.++-+|.|-|+|=.++-..-..|..+=.|++||+-|-. +.| .-.++++.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999941 122 23445555555556555
Q ss_pred HHhc
Q 009843 374 LSKN 377 (524)
Q Consensus 374 ~~~~ 377 (524)
.+..
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5543
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.57 E-value=0.00016 Score=69.11 Aligned_cols=63 Identities=33% Similarity=0.426 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCChHHHH--HHHHHh---------cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMC--YQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d-~lv~apTGsGKTl~--~~lp~l---------~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
++++.|.+|+..++.... .++.||+|+|||.+ .++..+ ..++.+++++|+.+-+.+.++.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 89999999999943 333333 3478999999999999999988877
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.54 E-value=0.00015 Score=75.95 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 009843 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d-~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
..+.+-|+.|+......++ .++++|+|+|||.+-. .-++.++.++||+.|+..-+...+++|.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 5778899999999888866 5788999999996543 3345678999999999999999998755
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.46 E-value=0.00021 Score=66.70 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHH
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIAL 90 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L 90 (524)
...++.|..++.++++..-+++.+|.|+|||+..+..++.. -.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 45678999999999987888999999999998877655432 3477888887754
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=97.44 E-value=0.00038 Score=54.25 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=36.8
Q ss_pred HHHHHHcCCCE-EEEcCCCChHHHHHH--HHH-hcC----CCeEEEeCcHHHHHHHHHHHH
Q 009843 46 AIQAVLSGRDC-FCLMPTGGGKSMCYQ--IPA-LAK----PGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 46 ~i~~~l~g~d~-lv~apTGsGKTl~~~--lp~-l~~----~~~~lvl~P~~~L~~q~~~~l 98 (524)
++...+.+..+ ++.+|+|+|||.... +.. +.. +.+++|++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 55544444454 559999999994432 111 222 678999999999999887777
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.40 E-value=0.0035 Score=59.19 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=56.5
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHc---CCCEEEEcCCCChHHHHHHHHHh----cCC-CeEEEeCc
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSP 86 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~---g~d~lv~apTGsGKTl~~~lp~l----~~~-~~~lvl~P 86 (524)
..|.+...++.+.--+.. ++ -.|+.|.++...+.+ |++.+.++-+|.|||-+ ++|++ ..+ ..+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~--~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES--NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc--Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcC
Confidence 345555555555433332 33 689999999999886 57899999999999987 45543 233 45666666
Q ss_pred HHHHHHHHHHHHHH
Q 009843 87 LIALMENQVIGLKE 100 (524)
Q Consensus 87 ~~~L~~q~~~~l~~ 100 (524)
.+|..|....|+.
T Consensus 79 -k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 79 -KALLEQMRQMLRS 91 (229)
T ss_pred -HHHHHHHHHHHHH
Confidence 5788888887776
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.37 E-value=0.0019 Score=72.33 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=45.8
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH--HHHHhcC-C--CeEEEeCcHHHHHH
Q 009843 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALME 92 (524)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~--~lp~l~~-~--~~~lvl~P~~~L~~ 92 (524)
...+|+ .+++.|++|+..+..++-+++.++.|+|||.+. ++-++.. + ..++++.||-.-+.
T Consensus 317 ~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 317 EKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 343564 699999999999998888999999999999643 2333433 3 46777889976655
No 184
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.34 E-value=0.062 Score=58.20 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=88.2
Q ss_pred CccEEEEeCccccHHHHHHHHHhCCC------------------ceEEEcCCCCHHHHHHHHHHHhcC-C--CcEEEEcc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAGGI------------------SCAAYHAGLNDKARSSVLDDWISS-R--KQVVVATV 316 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~------------------~~~~~h~~l~~~~R~~~~~~f~~g-~--~~VlVaT~ 316 (524)
+.++|||..+....+.+.+.|.+..+ ....+.|..+..+|++.+++|.+. . .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45688888888888888888875422 223567778899999999999853 2 35788899
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
+...|||+-..+-+|.++..+++.--.|.+-|.-|.|+...|++|----|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999987777888889999999999999999999999999888655554
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.33 E-value=0.0028 Score=61.05 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh---cCC--CeEEEeCcHHHH
Q 009843 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKP--GIVLVVSPLIAL 90 (524)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l---~~~--~~~lvl~P~~~L 90 (524)
++...+..|...+.++.++.-+++.+|+|+|||+.....++ ..+ .++++.-|..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 45566789999999998888889999999999976554333 222 345556576654
No 186
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.30 E-value=0.0022 Score=70.71 Aligned_cols=127 Identities=25% Similarity=0.224 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCChHHHHH--HHHHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCC
Q 009843 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCY--QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d-~lv~apTGsGKTl~~--~lp~l~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (524)
.++.-|++|+..++..+| .++.+-+|+|||.+. ++-+|. .++++|..+=|.+-+......|+..++...-+.+...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 688899999999888776 688899999999543 344443 4788999999999999999999999988776665543
Q ss_pred HHHHHH-----------HHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 114 MQVKTK-----------IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 114 ~~~~~~-----------~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
.....+ .+.++...-.+..|+.+|---+..|-| ..+.+++.|||||-.+..
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--------hccccCEEEEcccccccc
Confidence 221111 111222211223344443322222222 234599999999998865
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.23 E-value=0.00065 Score=71.79 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=65.4
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHH----hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009843 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (524)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~----l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (524)
.+|+.+++.-|..|+.+++...-.++++|+|+|||.+..-.. -...+.+||++|...-+.|..+.+.+.|+++.-+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 378899999999999999999889999999999996533211 1247899999999999999999999999887665
Q ss_pred ccC
Q 009843 109 SST 111 (524)
Q Consensus 109 ~~~ 111 (524)
.+.
T Consensus 485 ~ak 487 (935)
T KOG1802|consen 485 CAK 487 (935)
T ss_pred ehh
Confidence 543
No 188
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.22 E-value=0.003 Score=55.61 Aligned_cols=67 Identities=21% Similarity=0.384 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCC------ceEEEcCCCCHHHHHHHHHHHhcCC-CcEEEEcccccccccCCC--ccEEEEeCCCC
Q 009843 271 CDELSAYLSAGGI------SCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK 337 (524)
Q Consensus 271 ~e~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~f~~g~-~~VlVaT~a~~~GiD~p~--v~~VI~~~~p~ 337 (524)
.+++++.+...+. .-..+.-+.+..+...+++.|++.. ..||++|..+.+|||+|+ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3455555555443 2234444555656788999998654 379999988999999997 57899888874
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.22 E-value=0.0012 Score=67.74 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=33.9
Q ss_pred EEEEcCCCChHHHHHHHHH--h---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQIPA--L---AKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~--l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
++|.+..|||||+...--+ + ..+..++++++..+|+......+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 6889999999998754222 2 3477899999999998876666655
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.16 E-value=0.0044 Score=67.48 Aligned_cols=70 Identities=19% Similarity=0.090 Sum_probs=48.2
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH--HHHHhcC------CCeEEEeCcHHHHHHHHHHHHH
Q 009843 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~--~lp~l~~------~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
+.+.|....-.++|+.|+..++.++-+++.++.|+|||.+. ++..+.. ..++++..||---+....+.+.
T Consensus 137 l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~ 214 (586)
T TIGR01447 137 LENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLR 214 (586)
T ss_pred HHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHH
Confidence 34444333334899999999999999999999999999653 2333321 1478999999766665444443
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.15 E-value=0.0053 Score=67.07 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHcCCCC-CCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH--HHHHhcC-----CCeEEEeCcHHHHHHHH
Q 009843 23 KEALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQ 94 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~-~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~--~lp~l~~-----~~~~lvl~P~~~L~~q~ 94 (524)
...+...|.+.|+... ..++|++|+...+.++-+++.+++|+|||.+. ++..+.. ..+++++.||.--+...
T Consensus 136 ~~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL 215 (615)
T PRK10875 136 EALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARL 215 (615)
T ss_pred hHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHH
Confidence 3566777788776642 35899999999999888999999999999653 3333322 23678889998776655
Q ss_pred HHHHH
Q 009843 95 VIGLK 99 (524)
Q Consensus 95 ~~~l~ 99 (524)
.+.+.
T Consensus 216 ~e~~~ 220 (615)
T PRK10875 216 TESLG 220 (615)
T ss_pred HHHHH
Confidence 55443
No 192
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.10 E-value=0.0032 Score=55.53 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCC---ceEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEccc--ccccccCCC--ccEEEEeCCCCC--
Q 009843 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPKS-- 338 (524)
Q Consensus 271 ~e~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~VlVaT~a--~~~GiD~p~--v~~VI~~~~p~s-- 338 (524)
.+.+++.+.+.+. ....+.-+....+...+++.|++..- .||+++.- +++|||+|+ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4556666665543 12233323333344678888886433 69998887 999999997 688998888841
Q ss_pred -----------------------------HHHHHHHHhhcCCCCCCceEEEEec
Q 009843 339 -----------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (524)
Q Consensus 339 -----------------------------~~~y~Q~~GRagR~G~~~~~i~~~~ 363 (524)
.....|.+||+=|....--++++.+
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1223788899999865544455543
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.96 E-value=0.0024 Score=55.07 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=12.4
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
+++-+++.||+|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3456899999999999764
No 194
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.87 E-value=0.0046 Score=68.19 Aligned_cols=74 Identities=22% Similarity=0.167 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHH--H-HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009843 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~--l-p~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (524)
..+.+.|.+|+..++.. ..+++.+|+|+|||.+.. + .++..+.++++++|+..-+.+..+.|...+++..-+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~ 233 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGH 233 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCC
Confidence 46789999999999876 567899999999995432 2 23445779999999999999999999886666554443
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.83 E-value=0.0048 Score=67.56 Aligned_cols=77 Identities=26% Similarity=0.242 Sum_probs=54.3
Q ss_pred HcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHH---HHHhc--------------C--------------
Q 009843 33 HFGHAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQ---IPALA--------------K-------------- 77 (524)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l~----g~d~lv~apTGsGKTl~~~---lp~l~--------------~-------------- 77 (524)
.|.| +|++.|...+..+++ ..+.++..|||+|||++.+ ++... +
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 4566 578999988877664 5789999999999998754 22211 0
Q ss_pred --------------CCeEEEeCcHHHHHHHHHHHHHHcCC--ceeEecc
Q 009843 78 --------------PGIVLVVSPLIALMENQVIGLKEKGI--AGEFLSS 110 (524)
Q Consensus 78 --------------~~~~lvl~P~~~L~~q~~~~l~~~gi--~~~~~~~ 110 (524)
.+++++-+-|.+-+.|.++++++.+. +..++.+
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgS 144 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGS 144 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeec
Confidence 23567777888889999999998543 3444443
No 196
>PRK06526 transposase; Provisional
Probab=96.66 E-value=0.0059 Score=59.44 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHcCCCEEEEcCCCChHHHHHHH--HHhcCCCeEEEeCcHHHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~~l--p~l~~~~~~lvl~P~~~L~~q 93 (524)
+..+.++++.+|+|+|||....- -.+...|..++......|+.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 33567999999999999965432 122233433333444445443
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.64 E-value=0.0086 Score=59.69 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHHHHHH
Q 009843 30 LRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALME 92 (524)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~g~--d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~L~~ 92 (524)
-++.||+....-.|.-|+..+++.. =|.+.++.|+|||+-++.+++.+ -.++||.=|+..+-+
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 3478999888889999999988763 36778899999998877666653 456777778877654
No 198
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.62 E-value=0.012 Score=60.94 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=47.6
Q ss_pred HcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHH--h-----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPA--L-----AKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~lp~--l-----~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.|.|+...|.|-+-+..+. .+.++++.||+|+|||.+.+--+ . ....+.|+.+-|..=++-.+.+|+.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 5888999999988765543 34579999999999996633111 1 1356788888877766666666554
No 199
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.57 E-value=0.043 Score=47.45 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999654
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.56 E-value=0.0062 Score=62.69 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEcCCCChHHHHHHH--HHhc-CCCeEEEeCcHHHHH
Q 009843 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (524)
Q Consensus 38 ~~r~~Q~~~i~~~------l~g~d~lv~apTGsGKTl~~~l--p~l~-~~~~~lvl~P~~~L~ 91 (524)
.+++-|++++..+ .++..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 3678899998887 5678899999999999976421 1222 255788888985543
No 201
>PRK08181 transposase; Validated
Probab=96.51 E-value=0.028 Score=55.09 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=32.4
Q ss_pred CHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHH-HH-HhcCCCeEEEeCcHHHHHHH
Q 009843 40 RDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 40 r~~Q~~~i~----~~l~g~d~lv~apTGsGKTl~~~-lp-~l~~~~~~lvl~P~~~L~~q 93 (524)
...|..++. .+..++++++.+|+|+|||.... +. .+...|..++..+...|+.+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 455665553 23467889999999999995432 21 12234444455555666654
No 202
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.017 Score=60.70 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCCCccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHH
Q 009843 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 1 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp 73 (524)
|....+|+.+.+....|.++.-.+.+...|+.. +..+ +..++.||.|+|||.++.+-
T Consensus 1 ~~~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~----------------i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 1 MSGTHEVLSRKYRPQFFRDVIHQDLAIGALQNA----------------LKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred CCCCcchhHHHhCCCCHHHHhChHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 555667777777777777777677776666652 2233 23699999999999766543
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.057 Score=55.75 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=69.1
Q ss_pred CCEEEEcCCCChHHHHHH-HHHh-c-----CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ-IPAL-A-----KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~l-~-----~~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~ 123 (524)
+.+++++|||+|||.+.. +.+. . .+..+.+++ +.+.-+.+|...+.+ +|++...... .
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~--------- 242 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F--------- 242 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H---------
Confidence 457899999999997653 3322 1 234444444 555555555555444 5554322110 0
Q ss_pred hhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-C-CCEEEEec
Q 009843 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTA 201 (524)
Q Consensus 124 l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~-~~ii~lSA 201 (524)
..+...+.. ....++|+||++..... + .....++..+..... + -.++.+||
T Consensus 243 --------------------~~l~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 243 --------------------KDLKEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred --------------------HHHHHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 011111222 23588999999987531 1 112345555555442 3 35789999
Q ss_pred cCChhHHHHHHHHh
Q 009843 202 TAAPKVQKDVMESL 215 (524)
Q Consensus 202 T~~~~~~~~i~~~l 215 (524)
|.......++....
T Consensus 296 t~~~~~~~~~~~~~ 309 (388)
T PRK12723 296 TTKTSDVKEIFHQF 309 (388)
T ss_pred CCCHHHHHHHHHHh
Confidence 99988777666654
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.41 E-value=0.062 Score=50.16 Aligned_cols=126 Identities=21% Similarity=0.132 Sum_probs=65.9
Q ss_pred EEEEcCCCChHHHHHH-HHHh--cCCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHHHHHHhhcCCC
Q 009843 56 CFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp~l--~~~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (524)
+++++|||+|||.+.. +.+. .++.++.+++ ..|.=+.+|.+.+.+ +|++...........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-------------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-------------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------------
Confidence 5789999999996543 2221 1244444444 344455555555444 455443322111111
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHH
Q 009843 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (524)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~ 208 (524)
.......+.......++|+||-+-+.. .-.....++..+.... |.-..+.++||...+..
T Consensus 70 ---------------~~~~~~l~~~~~~~~D~vlIDT~Gr~~----~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 70 ---------------EIAREALEKFRKKGYDLVLIDTAGRSP----RDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ---------------HHHHHHHHHHHHTTSSEEEEEE-SSSS----THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ---------------HHHHHHHHHHhhcCCCEEEEecCCcch----hhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 111111222223448899999987632 1233345566665554 34458899999988776
Q ss_pred HHHHHH
Q 009843 209 KDVMES 214 (524)
Q Consensus 209 ~~i~~~ 214 (524)
..+...
T Consensus 131 ~~~~~~ 136 (196)
T PF00448_consen 131 EQALAF 136 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 205
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.40 E-value=0.011 Score=57.57 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.6
Q ss_pred HHHHHHhcCCCcEEEEcccccccccCCC--------ccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 009843 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (524)
Q Consensus 299 ~~~~~f~~g~~~VlVaT~a~~~GiD~p~--------v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~ 356 (524)
...+.|++|+.+|+|-+.+.+.||-+.. -|+-|...+|+|....+|..||+.|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4567899999999999999999998763 356778899999999999999999999843
No 206
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.38 E-value=0.038 Score=53.17 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
..+++.+|+|+|||...
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999543
No 207
>PRK12377 putative replication protein; Provisional
Probab=96.30 E-value=0.029 Score=54.32 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCEEEEcCCCChHHHHHH-H-HHhcCCCeEEEeCcHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMENQ 94 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-l-p~l~~~~~~lvl~P~~~L~~q~ 94 (524)
..+++.+|+|+|||.... + -.+...+..++.++..+|+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 568999999999995432 2 2233455555666666676653
No 208
>PRK04296 thymidine kinase; Provisional
Probab=96.28 E-value=0.011 Score=55.04 Aligned_cols=32 Identities=25% Similarity=0.096 Sum_probs=21.0
Q ss_pred CEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCc
Q 009843 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P 86 (524)
-.++.+|+|+|||...+-- +...+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3678999999999554321 1234567777766
No 209
>PRK08727 hypothetical protein; Validated
Probab=96.26 E-value=0.041 Score=52.92 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.4
Q ss_pred CCEEEEcCCCChHHHH
Q 009843 54 RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~ 69 (524)
.-+++.+|+|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999954
No 210
>PLN03025 replication factor C subunit; Provisional
Probab=96.24 E-value=0.039 Score=55.73 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=32.0
Q ss_pred ccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
||...+....+.++..++++...|+..... -...++++.||+|+|||....
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD--------------GNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHH
Confidence 566666666666666666666666552110 012368999999999996543
No 211
>PRK05973 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.066 Score=51.34 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=84.2
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHH---------HHHHcCCCEEEEcCCCChHHHHHH---HHHhcCCCeEEE
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAI---------QAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLV 83 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i---------~~~l~g~d~lv~apTGsGKTl~~~---lp~l~~~~~~lv 83 (524)
....+++++.+.....+ =||.+..-....+- .-+..|.-+++.|++|+|||.-.+ .-+...+..+++
T Consensus 19 ~~~~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vly 97 (237)
T PRK05973 19 RAQNIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVF 97 (237)
T ss_pred HhcCCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34457888888887777 48876554443322 222344567889999999996433 233345667888
Q ss_pred eCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009843 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (524)
Q Consensus 84 l~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (524)
++---. .+|..+++..+|+... . +.. ...+ ...+ .+.....+..+.. ....++||
T Consensus 98 fSlEes-~~~i~~R~~s~g~d~~---------~-------~~~---~~~~-d~~d-~~~~~~ii~~l~~---~~~~~lVV 152 (237)
T PRK05973 98 FTLEYT-EQDVRDRLRALGADRA---------Q-------FAD---LFEF-DTSD-AICADYIIARLAS---APRGTLVV 152 (237)
T ss_pred EEEeCC-HHHHHHHHHHcCCChH---------H-------hcc---ceEe-ecCC-CCCHHHHHHHHHH---hhCCCEEE
Confidence 874322 3556666766654311 0 000 0111 1111 1111122333332 22468999
Q ss_pred Eecccccccc--CCCCHHHHHHHHHHHHhCCCCCEEEEecc
Q 009843 164 IDEAHCISSW--GHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (524)
Q Consensus 164 iDEaH~i~~~--g~~fr~~~~~l~~l~~~~~~~~ii~lSAT 202 (524)
||=...+... ...++.....|..+.+.. ++++++++-.
T Consensus 153 IDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~-gitvIl~sQl 192 (237)
T PRK05973 153 IDYLQLLDQRREKPDLSVQVRALKSFARER-GLIIVFISQI 192 (237)
T ss_pred EEcHHHHhhcccchhHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 9999877431 112333334444444432 7777776544
No 212
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.23 E-value=0.0064 Score=60.84 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHH---HhcC----CCeEEEeCcHHHHHHHHHHHHHH
Q 009843 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAK----PGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp---~l~~----~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
+++-|.++|.. ....++|.|+.|||||.+...- .+.. ...++++++|++.+.+..+++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 46889999988 5678999999999999765422 1222 46899999999999988888776
No 213
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.23 E-value=0.076 Score=52.17 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=56.2
Q ss_pred HHcCCCEEEEcCCCChHHHH-HHHHH--hcC-CCeEEEeCcHHHHHHHHHHHHHHc--CCceeEec--cCCCHHHHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMC-YQIPA--LAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIY 121 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~-~~lp~--l~~-~~~~lvl~P~~~L~~q~~~~l~~~--gi~~~~~~--~~~~~~~~~~~~ 121 (524)
+..|.-+++.||+|+|||.. .++.. ... +..+++++--. -..+...++... ++...... ............
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 34567789999999999953 33322 223 56788876321 122333333221 33222111 111112222222
Q ss_pred HHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 122 ~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
..+.. .+.+ .++-.+....-......+........+++||||..+.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 22221 1112 2222222111233444444444445689999999999864
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.21 E-value=0.03 Score=51.50 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=31.8
Q ss_pred EEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009843 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (524)
+++.+|+|+|||...+ ...+..+..+++++.- +-..+..+.+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6889999999996432 3344557788888753 3445556666666543
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=96.20 E-value=0.025 Score=54.19 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=26.4
Q ss_pred CccEEEEeccccccccCCCCH-HHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 158 LLNLVAIDEAHCISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr-~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
..++++|||+|.+..... +. ..+.-+..... .+.+++++|++.+|..
T Consensus 91 ~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-WELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred cCCEEEEeChhhhcCChH-HHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 368999999999753211 11 11111222222 2456778888877764
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.13 Score=49.70 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHc-------C-CCEEEEcCCCChHHHHHH--HHHhcCCCeEEEeCcHHHHHHH
Q 009843 41 DKQLDAIQAVLS-------G-RDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 41 ~~Q~~~i~~~l~-------g-~d~lv~apTGsGKTl~~~--lp~l~~~~~~lvl~P~~~L~~q 93 (524)
+.|..++..+.+ + ..+++.+++|+|||.... .-.+...+..+++.+...|+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 456666654432 1 468999999999995432 2223334444455555555543
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.09 E-value=0.013 Score=50.22 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHhcC-CC--eEEEeCcHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~~-~~--~~lvl~P~~~L 90 (524)
+..+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4578999999999997654333322 22 47777765443
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.03 E-value=0.13 Score=50.43 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCChHHHHHH--HHHhcCC-CeEEEeCcHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ--IPALAKP-GIVLVVSPLIALMEN 93 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~--lp~l~~~-~~~lvl~P~~~L~~q 93 (524)
+..+++.+|+|+|||.... .-.+... +..++.++..+++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999995332 1223332 444445555555543
No 219
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.00 E-value=0.04 Score=62.07 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHH--HHHhc-CCCeEEEeCcHHHHHH
Q 009843 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~~ 92 (524)
..+++.|++|+..++.+ +-+++.++.|+|||.... .-++. .+..++++.||---+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAE 410 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHH
Confidence 35899999999999875 456899999999995432 22222 3667888899865443
No 220
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.03 Score=56.68 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~ 88 (524)
.++|+.+|+|+|||..+.+.+-..+....-++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 37899999999999877665544444444444443
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.94 E-value=0.1 Score=46.23 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=22.3
Q ss_pred EEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHH
Q 009843 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~ 89 (524)
+++.+|+|+|||.....- +...++.++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 578999999999643321 2224677777776443
No 222
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.034 Score=60.44 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=31.9
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
+++.+++....|.++...+.+.+.|++.+ .++ +-.|+.+|.|+|||....+
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al----------------~~gRLpHA~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHAL----------------EQQRLHHAYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHH----------------HhCCCceEEEEECCCCCCHHHHHHH
Confidence 45555555556666656666665555532 233 2368999999999976543
No 223
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.83 E-value=0.12 Score=59.39 Aligned_cols=54 Identities=24% Similarity=0.107 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHH--HHHhc-CCCeEEEeCcHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALM 91 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d-~lv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~ 91 (524)
.|++.|++|+..++.+++ +++.++.|+|||.... .-++. .+..++.+.||-.-+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 699999999999998765 5889999999996522 11222 366788899986544
No 224
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.071 Score=59.96 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=33.2
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CC-EEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RD-CFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d-~lv~apTGsGKTl~~~l 72 (524)
+|+.+.+....|.++--.+.+.+.|++. +..+ .+ .|+.||.|+|||.+..+
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~Lkna----------------I~~~rl~HAyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNA----------------LTQQRLHHAYLFTGTRGVGKTSLARL 57 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHH----------------HHhCCCCeEEEEECCCCCCHHHHHHH
Confidence 5556666666666666666666666552 2222 23 48999999999976544
No 225
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.72 E-value=0.15 Score=48.67 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCChHHHH
Q 009843 53 GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (524)
+..+++.+|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45689999999999953
No 226
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.11 Score=55.46 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=39.3
Q ss_pred CccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHH
Q 009843 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp 73 (524)
+.+|+.+.+....|.++.-.+.+...|+.. +..+ +..++.+|.|+|||.++.+-
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~a----------------i~~~ri~~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYT----------------ILNDRLAGGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 457777777888888777777777777663 2233 36899999999999776543
No 227
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.61 E-value=0.042 Score=65.64 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHH--HHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~--~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (524)
.+++.|++|+..++.+ +-+++++..|+|||... ++.++. .+..++.+.||-.-+ ..|++.|+.+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa----~~L~e~Gi~A~T 909 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV----GEMRSAGVDAQT 909 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH----HHHHHhCchHhh
Confidence 6899999999999965 56889999999999753 222221 245678889986554 344455655433
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.59 E-value=0.24 Score=50.09 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.2
Q ss_pred CCCEEEEcCCCChHHHHHH--HHHhcCCCeEEEeCcHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~--lp~l~~~~~~lvl~P~~~L~~q 93 (524)
+..+++.||||+|||.... ...+...+..++..+...|+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 5789999999999995432 2223334555555566666554
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=95.59 E-value=0.57 Score=47.46 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=32.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeccCChhHHHHHH
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVM 212 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~ii~lSAT~~~~~~~~i~ 212 (524)
..++|+||.+..+.. -...+..|..+.+. .|+.-++.++||..........
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 478999999998642 22334455555443 3555688889988765554433
No 230
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.57 E-value=0.096 Score=51.62 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=24.0
Q ss_pred CccEEEEeccccccccCCCC-HHHHHHHHHHHHhCCCCCEEEE
Q 009843 158 LLNLVAIDEAHCISSWGHDF-RPSYRKLSSLRNYLPDVPILAL 199 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~f-r~~~~~l~~l~~~~~~~~ii~l 199 (524)
.++++||||+|.+......- |.....|+.+-+.+ .+|+|++
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v 186 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV 186 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe
Confidence 48899999999987644221 22222233332222 6788866
No 231
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.57 E-value=0.25 Score=53.29 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=74.5
Q ss_pred HHHhcCCccEEEEeCccccHHHHHHHHHhCCC-------ceEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEc--ccc
Q 009843 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSRKQVVVAT--VAF 318 (524)
Q Consensus 252 ~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~~~VlVaT--~a~ 318 (524)
+....++ -+++|++|.+...++.+.+.+.|+ +.+++-..-+ -..+++.|. .|..-+|.|- .-+
T Consensus 624 L~~~VPg-GvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKl 699 (821)
T KOG1133|consen 624 LSNAVPG-GVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKL 699 (821)
T ss_pred HHhhCCC-cEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 3344454 489999999999999999987765 3344444433 245666665 4555666664 468
Q ss_pred cccccCCC--ccEEEEeCCCCC--------------------------------HHHHHHHHhhcCCCCCCceEEEEec
Q 009843 319 GMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (524)
Q Consensus 319 ~~GiD~p~--v~~VI~~~~p~s--------------------------------~~~y~Q~~GRagR~G~~~~~i~~~~ 363 (524)
++|||+.| .|.||..++|.. +..--|-+|||-|.-++=.++++++
T Consensus 700 SEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 700 SEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 89999987 689998888851 2233689999999866655666654
No 232
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.56 E-value=0.047 Score=53.37 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHc---C---CCEEEEcCCCChHHHHHHHHHhcC
Q 009843 42 KQLDAIQAVLS---G---RDCFCLMPTGGGKSMCYQIPALAK 77 (524)
Q Consensus 42 ~Q~~~i~~~l~---g---~d~lv~apTGsGKTl~~~lp~l~~ 77 (524)
+|..++..+.+ + -+.++.+|.|+|||-+..+.+-+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 57766665442 2 357999999999998876555443
No 233
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.56 E-value=0.064 Score=56.26 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
..+++.+|+|+|||.....
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999976544
No 234
>PRK08116 hypothetical protein; Validated
Probab=95.55 E-value=0.36 Score=47.45 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CEEEEcCCCChHHHHHHH--HHhcCCCeEEEeCcHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l--p~l~~~~~~lvl~P~~~L~~q 93 (524)
.+++.+++|+|||..... -.+...+..++..+...|+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 489999999999964332 122223444555555566554
No 235
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.06 Score=59.41 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=32.4
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~ 71 (524)
+++.+++....|.++...+.+.+.|++. +..+ +-+|+.+|.|+|||.+..
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~a----------------L~~gRL~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHA----------------LDGGRLHHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHH----------------HhcCCCCeEEEEECCCCCCHHHHHH
Confidence 4455666666666666666666666653 1222 235899999999997544
No 236
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.13 Score=56.06 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=32.8
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
.|+...+....|.++..++.+...|++.. .++ ..+|+.+|.|+|||.++.+
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai----------------~~~ri~ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAA----------------QENRVAPAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHH----------------HcCCCCceEEEECCCCCCHHHHHHH
Confidence 45555666666666655666655555532 222 3578899999999987654
No 237
>PRK04195 replication factor C large subunit; Provisional
Probab=95.50 E-value=0.12 Score=55.43 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=31.8
Q ss_pred ccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHc---CCCEEEEcCCCChHHHHHHH
Q 009843 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~---g~d~lv~apTGsGKTl~~~l 72 (524)
+|-..+....+.++..++.....|+..+ ..... .+.+++.||+|+|||.....
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l-------------~~~~~g~~~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWI-------------ESWLKGKPKKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHH-------------HHHhcCCCCCeEEEECCCCCCHHHHHHH
Confidence 4544555555555555566555555421 11112 35799999999999976543
No 238
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.49 E-value=0.2 Score=56.19 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHH----cC---CCE-EEEcCCCChHHHHH
Q 009843 39 FRDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (524)
Q Consensus 39 ~r~~Q~~~i~~~l----~g---~d~-lv~apTGsGKTl~~ 70 (524)
-|.-|.+.|..++ .+ ..+ ++.|+||+|||++.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3556666554433 22 234 69999999999874
No 239
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.075 Score=57.07 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=34.6
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
+++.+.+....|.++.-.+.+.+.|+... ..+ +-.++.||.|+|||.++.+
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~----------------~~~~l~ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNAL----------------DQQYLHHAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHH----------------HhCCCCeeEEEECCCCCCHHHHHHH
Confidence 55666667777777766777766666532 222 2368999999999976543
No 240
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.39 E-value=0.043 Score=61.36 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccccCCCccEEE
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD~p~v~~VI 331 (524)
.+.+++|.++|+.-+.+.++.+++ .|+++..+||+++..+|..+++.+.+|+.+|+|+|.+ +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999988877765 3789999999999999999999999999999999976 45567788898887
No 241
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.36 E-value=0.15 Score=49.17 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=66.7
Q ss_pred cCCCEEEEcCCCChHHHHHH---HHHhcC-CCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-cCCCHHHHHH---H
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTK---I 120 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~---lp~l~~-~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~---~ 120 (524)
.|.-+++.|++|+|||.-.+ .-+... +..+++++ |...++....... .++....+. .......... .
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45567889999999995322 222333 67888887 4445554432221 233211111 1111111111 1
Q ss_pred HHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC--CCCHHH----HHHHHHHHHhCCCC
Q 009843 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRPS----YRKLSSLRNYLPDV 194 (524)
Q Consensus 121 ~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--~~fr~~----~~~l~~l~~~~~~~ 194 (524)
...+.. ..+.+.....+.-..+...+........+++||||=.+.+..-. .+-+.. +..|..+...+ ++
T Consensus 90 ~~~~~~----~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~-~~ 164 (242)
T cd00984 90 IGELKE----LPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKEL-NV 164 (242)
T ss_pred HHHHhc----CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-CC
Confidence 111111 22222211112223344444444444468999999999875422 111111 22233333232 67
Q ss_pred CEEEEecc
Q 009843 195 PILALTAT 202 (524)
Q Consensus 195 ~ii~lSAT 202 (524)
+++++|-.
T Consensus 165 ~ii~~~q~ 172 (242)
T cd00984 165 PVIALSQL 172 (242)
T ss_pred eEEEeccc
Confidence 77777644
No 242
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.36 Score=49.56 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.+|||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 46999999999999764
No 243
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.32 E-value=0.088 Score=58.76 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=64.7
Q ss_pred CccEEEEeCccccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~ 334 (524)
+.++||.++++.-+.++.+.|++. |..+..+||+++..+|.....+..+|+.+|+|+|...- -+.+.++.+||.-.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 568999999999999999999874 88899999999999999999999999999999997432 25567888887544
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.45 Score=48.98 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=33.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeccCChhHHHHHHHHhC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (524)
..++|+||-+=.... -......+..+... .|...++.+|||........+...+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 478999998866432 12234445554433 34444677999887766566665543
No 245
>PF13173 AAA_14: AAA domain
Probab=95.30 E-value=0.11 Score=44.83 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=27.7
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChh
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (524)
-.+++|||+|.+.+|. ..+..+....++.+++ +|++....
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii-~tgS~~~~ 101 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKII-LTGSSSSL 101 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceEE-EEccchHH
Confidence 5689999999998876 5666677766555554 55554433
No 246
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.27 E-value=0.5 Score=48.45 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=35.0
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCC-EEEEeccCChhHHHHHHHHhCCC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQ 218 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~-ii~lSAT~~~~~~~~i~~~l~l~ 218 (524)
..++|.||=+-+- . .| .....+|..+.....+.. -+.||||....+...+...+..-
T Consensus 281 ~~d~ILVDTaGrs-~--~D-~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~ 338 (407)
T COG1419 281 DCDVILVDTAGRS-Q--YD-KEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLF 338 (407)
T ss_pred cCCEEEEeCCCCC-c--cC-HHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccC
Confidence 3588998887541 1 11 112233444444433333 67899999999999888877643
No 247
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.26 E-value=0.17 Score=52.07 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
..+++.+|+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 248
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.26 E-value=0.86 Score=47.89 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=34.4
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHH-h-CCCCCEEEEeccCChhHHHHHHHHhC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-Y-LPDVPILALTATAAPKVQKDVMESLC 216 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~-~~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (524)
..++|+||.+-... .+ ......+..+.. . .+....+.++||..+.....+...+.
T Consensus 299 ~~DlVlIDt~G~~~---~d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQ---RD-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCC---CC-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 47899999986532 11 122334555544 2 22233888999999888777776654
No 249
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.078 Score=59.45 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC----C-CceEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~----g-~~~~~-~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
..+..+..+.-...+.++++.++|.--+.+.++.|.+. | ..+.. ||+.|+.++++.+++++.+|..+|+|+|+.
T Consensus 111 TTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 111 TTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred hHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 44455555554555678899999998888888888754 2 33333 999999999999999999999999999987
Q ss_pred cc
Q 009843 318 FG 319 (524)
Q Consensus 318 ~~ 319 (524)
|-
T Consensus 191 FL 192 (1187)
T COG1110 191 FL 192 (1187)
T ss_pred HH
Confidence 64
No 250
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.21 E-value=0.072 Score=64.47 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~--lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (524)
.+++.|++|+..++.+ +-+++.+..|+|||.... +.++. .+..++.+.||-.-+. .|+..|+.+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk----~L~e~Gi~A~TI 1042 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG----EMRSAGVDAQTL 1042 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH----HHHhcCcchhhH
Confidence 6899999999999976 457899999999996532 22222 1346888899865544 455566654443
Q ss_pred c
Q 009843 109 S 109 (524)
Q Consensus 109 ~ 109 (524)
+
T Consensus 1043 ~ 1043 (1747)
T PRK13709 1043 A 1043 (1747)
T ss_pred H
Confidence 3
No 251
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.14 Score=52.65 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=33.3
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
+|+...+....+.++.-++.+.+.|++. +..+ +-+++.||.|+|||.....
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~----------------~~~~~~~h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNG----------------LSLGRIHHAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHH----------------HHcCCCCeEEEEecCCCCCHHHHHHH
Confidence 5566666666666666666666666542 2222 2358999999999976543
No 252
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.15 E-value=0.13 Score=59.50 Aligned_cols=69 Identities=26% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHH--HHHhc-CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 009843 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (524)
..|++.|.+|+..+..+ +-++++++.|+|||...- .-++. .+..++.+.|+-.-+ ..|.+ .|+.+..+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA----~~L~e~~Gi~a~TIa 453 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEAGIQSRTLS 453 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHH----HHHHHhhCCCeeeHH
Confidence 36999999999988654 457899999999996532 12222 366888889986544 34433 466655443
No 253
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.16 Score=54.08 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=27.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~ 209 (524)
+..+++||||+|.++.. .+..|....+.-|+.-++.|.+|-...+..
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 45789999999998752 223444444443433345555565444433
No 254
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.54 Score=45.97 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=63.8
Q ss_pred CEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccE
Q 009843 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 133 (524)
.+++.+|+|+|||.. .-++.. .+.+.+-+..-.|+.-|.-+-.
T Consensus 168 giLLyGPPGTGKSYL--AKAVATEAnSTFFSvSSSDLvSKWmGESE---------------------------------- 211 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYL--AKAVATEANSTFFSVSSSDLVSKWMGESE---------------------------------- 211 (439)
T ss_pred eEEEeCCCCCcHHHH--HHHHHhhcCCceEEeehHHHHHHHhccHH----------------------------------
Confidence 589999999999954 333332 2356666666667654332111
Q ss_pred EEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH-HHHHHHH-H-HHHhCC----CCCEEEEeccCChh
Q 009843 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR-PSYRKLS-S-LRNYLP----DVPILALTATAAPK 206 (524)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr-~~~~~l~-~-l~~~~~----~~~ii~lSAT~~~~ 206 (524)
.+...|..+...+.-++|.|||++.+..-+.+-. ..-++|+ . +.++.. +--++.|-||-.|.
T Consensus 212 -----------kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 212 -----------KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred -----------HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 1233444555555678999999998854332211 1122221 1 222211 33489999998887
Q ss_pred HHHHHHH
Q 009843 207 VQKDVME 213 (524)
Q Consensus 207 ~~~~i~~ 213 (524)
+....++
T Consensus 281 ~LDsAIR 287 (439)
T KOG0739|consen 281 VLDSAIR 287 (439)
T ss_pred hHHHHHH
Confidence 6654433
No 255
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.08 E-value=0.0081 Score=65.45 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=50.9
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc-C--CCcEEEEccccccc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-S--RKQVVVATVAFGMG 321 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g--~~~VlVaT~a~~~G 321 (524)
.+.+++||..-.+..+-+...+...+ ....+.|..+..+|+.....|.. | ..-.+.+|.+-|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 46678888887777777777777777 77889999999999999999993 3 34477888887765
No 256
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.14 Score=55.84 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=31.0
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp 73 (524)
+++.+.+....|.++.-.+.+.+.|++. +..+ +-+++.||.|+|||.++.+-
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~a----------------I~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSA----------------LERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444455555555555555555555442 2233 24599999999999766443
No 257
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.06 E-value=0.12 Score=56.64 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=31.4
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC--C-EEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR--D-CFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~--d-~lv~apTGsGKTl~~~l 72 (524)
+++.+......|.++.-.+.+...|++. +..|+ + .++.||.|+|||....+
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~----------------l~~~rl~hAyLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANA----------------LDLGRLHHAYLFSGTRGVGKTTIARL 57 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4555555555666655566665555542 22332 2 58999999999976543
No 258
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.06 E-value=0.42 Score=48.03 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=31.7
Q ss_pred ccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC--CEEE-EcCCCChHHHHH
Q 009843 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR--DCFC-LMPTGGGKSMCY 70 (524)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~--d~lv-~apTGsGKTl~~ 70 (524)
-.+|-..+....+.++..++++...++... ..|+ ++++ .||+|+|||...
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIV----------------KKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHH----------------hcCCCCeEEEeeCcCCCCHHHHH
Confidence 356666666666666666677666666532 1332 4444 899999999654
No 259
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.01 E-value=0.12 Score=55.47 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.1
Q ss_pred CccEEEEeCccccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~ 334 (524)
+.++||.++++.-+.++++.|++. |..+..+||+++..+|.....+..+|+.+|+|+|...-. ..++++.+||.-.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 567999999999999999999875 778999999999999999999999999999999965332 4567888887443
No 260
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.11 Score=56.73 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=32.5
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp 73 (524)
+++.+.+....|.++.-.+.+...|++.+ ..+ +-.++.||.|+|||.+..+-
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l----------------~~~rl~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNAL----------------TQQRLHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHH----------------HcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45555555566666555666666665522 222 23589999999999766543
No 261
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.95 E-value=0.13 Score=56.56 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=34.6
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~l 72 (524)
+++.+.+....|.++.-.+.+.+.|+..+...+ -.+.+|+.+|.|+|||.+..+
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~r-------------l~Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGR-------------LHHAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCC-------------CCeEEEEECCCCCcHHHHHHH
Confidence 455566666666666666777666666322110 013579999999999976543
No 262
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.91 E-value=0.02 Score=59.51 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=45.9
Q ss_pred CEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccC
Q 009843 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (524)
++++.||||+|||.++.+|.+.. .+.+||+-|--++.......++..|-++..++..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP~ 58 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDPT 58 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcCC
Confidence 47899999999999999987765 6788999999999887777767777666666543
No 263
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.86 E-value=0.21 Score=55.31 Aligned_cols=89 Identities=25% Similarity=0.210 Sum_probs=68.3
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhC-C-CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 009843 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (524)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~ 320 (524)
|-+...++++. ..++++||.++.+..+.++.+.|++. | ..+..+|+++++.+|.+...+..+|+.+|+|.|-.+ .
T Consensus 173 KTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-v 251 (665)
T PRK14873 173 WARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-V 251 (665)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-E
Confidence 34444444433 24567999999999999999999876 4 679999999999999999999999999999999642 2
Q ss_pred cccCCCccEEEEeC
Q 009843 321 GIDRKDVRLVCHFN 334 (524)
Q Consensus 321 GiD~p~v~~VI~~~ 334 (524)
=.-+++...||..+
T Consensus 252 FaP~~~LgLIIvdE 265 (665)
T PRK14873 252 FAPVEDLGLVAIWD 265 (665)
T ss_pred EeccCCCCEEEEEc
Confidence 23455667766443
No 264
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.85 E-value=0.2 Score=56.11 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=24.0
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCCh
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~ 205 (524)
..+++|||+|.+.... -..++....+..+++++||..+
T Consensus 110 ~~IL~IDEIh~Ln~~q---------QdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 110 RTILFIDEVHRFNKAQ---------QDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred ceEEEEeChhhCCHHH---------HHHHHHHhcCceEEEEEecCCC
Confidence 5689999999975421 1223444445667777777543
No 265
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.80 E-value=0.22 Score=47.24 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+..+++.+|+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 266
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.79 E-value=0.14 Score=48.64 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.1
Q ss_pred CccEEEEeccccccc
Q 009843 158 LLNLVAIDEAHCISS 172 (524)
Q Consensus 158 ~l~~iViDEaH~i~~ 172 (524)
..++++||.+|.+..
T Consensus 97 ~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 97 SADLLIIDDIQFLAG 111 (219)
T ss_dssp TSSEEEEETGGGGTT
T ss_pred cCCEEEEecchhhcC
Confidence 488999999999865
No 267
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.76 E-value=0.09 Score=65.10 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHcCC--CEEEEcCCCChHHHHH------HHHHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009843 37 AQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~--d~lv~apTGsGKTl~~------~lp~l~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (524)
..+++.|++|+..++.+. -++++++.|+|||... +..+.. .+..++.+.||-.-+ ..|+..|+.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa----~~L~~~g~~a~ 1092 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV----GELKSAGVQAQ 1092 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH----HHHHhcCCchH
Confidence 468999999999998764 4678899999999654 112222 255788889985543 44555566543
No 268
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.72 E-value=0.27 Score=48.12 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.++++.+|+|+|||....
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997654
No 269
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.64 Score=47.72 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=30.2
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHh
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
..++++||++-.... + ......+..+.... +...++.++||.......++...+
T Consensus 215 ~~DlVLIDTaG~~~~---d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQR---D-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcc---c-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 368999999954210 1 11112333332221 123388999999888777665543
No 270
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.96 Score=47.02 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=65.8
Q ss_pred CEEEEcCCCChHHHHHH-HHH---hcCCCeEEEeC--cHHHHHHHHHHHH-HHcCCceeEeccCCCHHHHHHHHHHhhcC
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPA---LAKPGIVLVVS--PLIALMENQVIGL-KEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~---l~~~~~~lvl~--P~~~L~~q~~~~l-~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 127 (524)
-+++++|||+|||.... +.. +..+.++.++. +.++.+.+|.... ...|++..... .
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------~----------- 287 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------D----------- 287 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------H-----------
Confidence 36788999999996543 332 22344555444 5566666655554 33444321100 0
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC----CCCCEEEEeccC
Q 009843 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (524)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~----~~~~ii~lSAT~ 203 (524)
...+.........++|+||=+-.... -......|..+.... |.-.++.|+||.
T Consensus 288 -------------------~~~l~~~l~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 288 -------------------IKKFKETLARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -------------------HHHHHHHHHhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 01111111123478899997654311 123445555555543 223588999999
Q ss_pred ChhHHHHHHHHh
Q 009843 204 APKVQKDVMESL 215 (524)
Q Consensus 204 ~~~~~~~i~~~l 215 (524)
......++....
T Consensus 345 ~~~~~~~~~~~f 356 (432)
T PRK12724 345 SYHHTLTVLKAY 356 (432)
T ss_pred CHHHHHHHHHHh
Confidence 987777666654
No 271
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.60 E-value=0.21 Score=54.37 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~l 72 (524)
+++-+......|.++.-.+.+...|+..+...+ -++-.|+.||.|+|||.++-+
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~-------------~~hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGK-------------ISHAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCC-------------CCeEEEEECCCCCCHHHHHHH
Confidence 334455555556666666666666665321110 123468899999999976543
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.56 E-value=0.36 Score=51.02 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=22.7
Q ss_pred CCEEEEcCCCChHHHHHHHHH--h-cCCCeEEEeCcHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~--l-~~~~~~lvl~P~~~L~~q 93 (524)
+.+++.||+|+|||......+ + ..+.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHH
Confidence 348999999999995433211 1 23455555543 344443
No 273
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.53 E-value=0.47 Score=49.32 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999753
No 274
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.25 Score=53.35 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=31.1
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR---DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~---d~lv~apTGsGKTl~~~l 72 (524)
+|+.+......|.++.-++.+...|... +..++ -.++.||.|+|||.....
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~----------------i~~~rl~ha~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHA----------------LETQKVHHAYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4555555555666555555555555442 22222 368999999999976543
No 275
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.48 E-value=0.17 Score=57.35 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChh
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (524)
+..+++||||+|.|..-+ ...|..+++..|..-+++|..|-...
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 457899999999997532 34455555555543344444454333
No 276
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.45 E-value=0.096 Score=58.08 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc-cccccCCCccEEE
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~-~~GiD~p~v~~VI 331 (524)
.+.+++|.++|+.-++++++.+++ .|+++..+||+++..+|...++...+|+.+|+|+|.+. ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 356899999999999988877765 37899999999999999999999999999999999764 4457778888887
No 277
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.28 Score=52.17 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.1
Q ss_pred EEEEcCCCChHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (524)
+++.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976543
No 278
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.42 E-value=0.35 Score=52.91 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=33.3
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~lp 73 (524)
.++.+.+....|.++...+.+.+.|+..| ..| +.+|+.+|.|+|||....+-
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~----------------~~gri~ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAF----------------ETGRIAQAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHH----------------HcCCCCceEEEECCCCCCHHHHHHHH
Confidence 34455555566666666666666666533 233 35899999999999766443
No 279
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.33 Score=53.45 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=34.7
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
.|+...+....+.++..++.+...|++.+-... -.+.+|+.||.|+|||..+.
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~r-------------l~~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNR-------------IAPAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCC-------------CCceEEEECCCCCChHHHHH
Confidence 455566666667777777777777766322111 12457999999999997654
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.36 E-value=0.44 Score=49.08 Aligned_cols=56 Identities=29% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHHHH-HHH-h-cCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009843 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKG 102 (524)
Q Consensus 46 ~i~~~l~-----g~d~lv~apTGsGKTl~~~-lp~-l-~~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (524)
-+..++. |.-+++.+++|+|||...+ +.. + ..++++++++-..+ ..|...+..++|
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg 133 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLG 133 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcC
Confidence 3455554 3457899999999996432 322 1 23568888875433 234444444544
No 281
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.34 E-value=0.2 Score=42.81 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred EEEEcCCCChHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (524)
+++.+|+|+|||.....
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58899999999976543
No 282
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.32 E-value=0.034 Score=59.41 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=47.2
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccC
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (524)
.+++++||||+|||..+.+|.+.. .+.+||.-|--+|.......+++.|-++..++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp~ 103 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDPF 103 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeecc
Confidence 369999999999999999998765 6678888899999988887788877666655543
No 283
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.32 E-value=0.38 Score=51.08 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
..+++.||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999654
No 284
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.26 E-value=0.13 Score=50.16 Aligned_cols=141 Identities=22% Similarity=0.229 Sum_probs=71.3
Q ss_pred CEEEEcCCCChHHHHHH---HHHhcC-CCeEEEeCc---HHHHHHHHHHHHHHcCCceeEeccC-CCHHHHHHHH---HH
Q 009843 55 DCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIY---ED 123 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~---lp~l~~-~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~~~~-~~~~~~~~~~---~~ 123 (524)
=+++.|+||.|||...+ .-+... +..+++++. ...++...+..+ .+++...+... ....+...+. ..
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL--SGVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh--hcchhhhhhccccCHHHHHHHHHHHHH
Confidence 35777899999996543 222333 468888874 344444443333 23333222222 2223322222 22
Q ss_pred hhcCCCcccEE-EeCcccccChhhHHHHHhhhcc-CCccEEEEeccccccccC--CCCHHHH----HHHHHHHHhCCCCC
Q 009843 124 LDSGKPSLRLL-YVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWG--HDFRPSY----RKLSSLRNYLPDVP 195 (524)
Q Consensus 124 l~~~~~~~~ll-~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g--~~fr~~~----~~l~~l~~~~~~~~ 195 (524)
+.. ..+. ..+|. +....+...+...... ..+++||||=.|.+.... .+-+..+ ..|+.+...+ ++|
T Consensus 99 l~~----~~l~i~~~~~-~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~ 172 (259)
T PF03796_consen 99 LSD----LPLYIEDTPS-LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIP 172 (259)
T ss_dssp HHT----SEEEEEESSS--BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSE
T ss_pred Hhh----CcEEEECCCC-CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCe
Confidence 222 2232 23332 2223344444444443 679999999999997642 1122222 2334333333 889
Q ss_pred EEEEeccC
Q 009843 196 ILALTATA 203 (524)
Q Consensus 196 ii~lSAT~ 203 (524)
++++|..-
T Consensus 173 vi~~sQln 180 (259)
T PF03796_consen 173 VIALSQLN 180 (259)
T ss_dssp EEEEEEBS
T ss_pred EEEccccC
Confidence 99888764
No 285
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.23 E-value=0.61 Score=49.06 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCChHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-cCCCHHHHHHHHHHh
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDL 124 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~l 124 (524)
|.=+++.|+||+|||...+ +. ++..+..+++++ |...|+...... ..++....+. +.....+...+....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLAS--KSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3446788999999995433 22 123456777887 344443332221 1334322221 122222222222111
Q ss_pred hcCCCcccEEEeCcccccChhhHHHHHhhhcc-CCccEEEEeccccccc-cCCCCHHHH----HHHHHHHHhCCCCCEEE
Q 009843 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISS-WGHDFRPSY----RKLSSLRNYLPDVPILA 198 (524)
Q Consensus 125 ~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~-~g~~fr~~~----~~l~~l~~~~~~~~ii~ 198 (524)
..-. ...+.+....-+.-..+...+.+.... +.+++||||=.|.+.. .+.+-...+ +.|+.+.+.+ ++|+++
T Consensus 272 ~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~-~i~Vi~ 349 (421)
T TIGR03600 272 DRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL-DVPVVL 349 (421)
T ss_pred HHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh-CCcEEE
Confidence 1110 123332222122222333333333322 2589999999998864 222211111 1233332222 788888
Q ss_pred Eecc
Q 009843 199 LTAT 202 (524)
Q Consensus 199 lSAT 202 (524)
+|-.
T Consensus 350 lsQl 353 (421)
T TIGR03600 350 LAQL 353 (421)
T ss_pred eccc
Confidence 8764
No 286
>PRK05642 DNA replication initiation factor; Validated
Probab=94.16 E-value=0.22 Score=47.87 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=24.3
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChh
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPK 206 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~ 206 (524)
.++++||++|.+..-.. .. ..+-.+.+.+. +-..+++|++.+|.
T Consensus 98 ~d~LiiDDi~~~~~~~~-~~---~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 98 YELVCLDDLDVIAGKAD-WE---EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred CCEEEEechhhhcCChH-HH---HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 57899999998753110 11 22333333322 23467788876654
No 287
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.36 Score=51.58 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=35.6
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp 73 (524)
.||.+......|.++.-++.+...|+......++ .+-.++.||.|+|||.+..+-
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i-------------~hayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRV-------------SHAYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCC-------------CeEEEEECCCCCCHHHHHHHH
Confidence 5677777777777777777777666663211111 123578999999999776543
No 288
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.07 E-value=0.4 Score=48.26 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHH
Q 009843 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 36 ~~~~r~~Q~~~i~~~l----~g~---d~lv~apTGsGKTl~~ 70 (524)
++.+.|||..++..+. +|+ -.++.+|.|.||+..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 4678999999987765 333 4789999999999654
No 289
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.5 Score=47.45 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=32.9
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHH
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~d~lv~apTGsGKTl~~ 70 (524)
.+...+.+++-.++..+-+++.--.+=..| +.++.+ .--+.+++.+|+|+|||+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~P---ElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNP---ELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCH---HHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 344455666666666666666543321122 222221 12378999999999999865
No 290
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.03 E-value=0.49 Score=52.41 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHH---HhcCC--CeEEEeCcHHHHHHHHH----HHHHHcCCce
Q 009843 37 AQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAKP--GIVLVVSPLIALMENQV----IGLKEKGIAG 105 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~--d~lv~apTGsGKTl~~~lp---~l~~~--~~~lvl~P~~~L~~q~~----~~l~~~gi~~ 105 (524)
+....-|.+.+..+++.+ -+++.|.=|=|||.+.-+. +.... ..++|.+|+.+=.+... +.|..+|.+-
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~ 292 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKR 292 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcc
Confidence 344444445555666553 4678899999999764422 22223 48999999887555433 3344455442
Q ss_pred eEeccCCCHHHHHHHHHHhhc-CCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH
Q 009843 106 EFLSSTQTMQVKTKIYEDLDS-GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (524)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (524)
....... ..+.. ......|-|..|.... . .-+++|||||=-+-- ..|
T Consensus 293 ~v~~d~~---------g~~~~~~~~~~~i~y~~P~~a~-------------~-~~DllvVDEAAaIpl---------plL 340 (758)
T COG1444 293 KVAPDAL---------GEIREVSGDGFRIEYVPPDDAQ-------------E-EADLLVVDEAAAIPL---------PLL 340 (758)
T ss_pred ccccccc---------cceeeecCCceeEEeeCcchhc-------------c-cCCEEEEehhhcCCh---------HHH
Confidence 2111110 00011 1122456677776432 0 157999999987631 334
Q ss_pred HHHHHhCCCCCEEEEeccCC
Q 009843 185 SSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 185 ~~l~~~~~~~~ii~lSAT~~ 204 (524)
..+... .+.++||.|..
T Consensus 341 ~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 341 HKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred HHHHhh---cCceEEEeeec
Confidence 444433 46789999964
No 291
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.00 E-value=0.049 Score=59.44 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccC
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (524)
+++++.||||+|||..+.+|.+.. ++.+||+=|--++........++.|-++..++..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999999999999998766 7788999999999998888888888777666543
No 292
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.98 E-value=0.53 Score=49.80 Aligned_cols=57 Identities=28% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHH-HHHHHh--cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 46 AIQAVLS-----GRDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 46 ~i~~~l~-----g~d~lv~apTGsGKTl~-~~lp~l--~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
-++.++. |.-+++.+++|+|||.. .++..- ..+.++++++-.-+ ..|...+..++|.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCC
Confidence 3455554 34578999999999953 333221 24678888885332 3444455555543
No 293
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.55 Score=49.39 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=30.8
Q ss_pred cCCccEEEEeccccccccCC---CCHHHH-HHHHHHHHhCCC--CCEEEEeccCChhH
Q 009843 156 RGLLNLVAIDEAHCISSWGH---DFRPSY-RKLSSLRNYLPD--VPILALTATAAPKV 207 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~---~fr~~~-~~l~~l~~~~~~--~~ii~lSAT~~~~~ 207 (524)
.++++.||+|+...+.+|.. -|-... +.|.-+.++.|. ..++.+.-|....+
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 45689999999999999853 333332 224444455452 34555555544444
No 294
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.92 E-value=0.63 Score=47.10 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.+|+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997653
No 295
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.42 Score=49.84 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
..++.+|.|+|||.++..
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 296
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=0.38 Score=48.68 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHcCC----CEEEEcCCCChHHHHH
Q 009843 39 FRDKQLDAIQAVLSGR----DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g~----d~lv~apTGsGKTl~~ 70 (524)
..|||...+..+.... -.++.+|.|.||+..+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 4789999998887542 4789999999999654
No 297
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.85 E-value=2.4 Score=41.64 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=33.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHh
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
...++++||-+=.... -......+..+.... |...++.++||.......++.+.+
T Consensus 153 ~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 153 ARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 3589999999866421 123345555554433 333477899998876666666554
No 298
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.84 E-value=2.6 Score=52.73 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHH--HHHhc-CCCeEEEeCcHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~~ 92 (524)
.+++.|++++..++.. +-.++.++.|+|||.... .-++. .+..+++++|+-.-+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 5889999999998876 446889999999996532 22233 3668899999976443
No 299
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.84 E-value=0.071 Score=52.13 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=24.2
Q ss_pred EEEEcCCCChHHHHHHHHHhcC-------CCeEEEeCcHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALM 91 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~-------~~~~lvl~P~~~L~ 91 (524)
.+|.+|||+|||- ++-.|.. ...|++|+|.+..+
T Consensus 90 ~~VYGPTG~GKSq--LlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ--LLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH--HHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 5788999999994 2333322 56899999987554
No 300
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.83 E-value=0.36 Score=47.15 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=20.4
Q ss_pred HHHHHHHHHHH----cCC-CEEEEcCCCChHHHHHH
Q 009843 41 DKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 41 ~~Q~~~i~~~l----~g~-d~lv~apTGsGKTl~~~ 71 (524)
+.+.+++..+. .+. -+++.+|+|+|||....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34455555442 233 47899999999997654
No 301
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.80 E-value=0.49 Score=46.20 Aligned_cols=52 Identities=17% Similarity=0.049 Sum_probs=31.0
Q ss_pred cCCCEEEEcCCCChHHH-HHHHH--HhcCCCeEEEeCc---HHHHHHHHHHHHHHcCC
Q 009843 52 SGRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSP---LIALMENQVIGLKEKGI 103 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl-~~~lp--~l~~~~~~lvl~P---~~~L~~q~~~~l~~~gi 103 (524)
.|.-+++.+|+|+|||. |.++. .+..+..+++++- ...+.++.......+|.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 34568899999999995 33332 2345678888873 23333343334444443
No 302
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=2 Score=45.95 Aligned_cols=54 Identities=28% Similarity=0.212 Sum_probs=31.3
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHh
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
..++|+||.+-.... + ......+..+........++.++++.......++...+
T Consensus 428 ~~DLVLIDTaG~s~~---D-~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQR---D-RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchh---h-HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 478999999965321 1 11122344444443445688888888766555554443
No 303
>PRK05748 replicative DNA helicase; Provisional
Probab=93.71 E-value=0.32 Score=51.57 Aligned_cols=146 Identities=20% Similarity=0.178 Sum_probs=65.5
Q ss_pred CCEEEEcCCCChHHHHHH-HH---HhcCCCeEEEeCcHHHHHHHHHHHHH-H-cCCceeE-eccCCCHHHHHHHHHHhhc
Q 009843 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLK-E-KGIAGEF-LSSTQTMQVKTKIYEDLDS 126 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lvl~P~~~L~~q~~~~l~-~-~gi~~~~-~~~~~~~~~~~~~~~~l~~ 126 (524)
.-+++.|+||.|||.-.+ +. +...+..+++++.-- -..|...++- . .++.... ..+.....+...+......
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEm-s~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 282 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM-GAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGS 282 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCC-CHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 446778999999995433 21 122355666766321 1223333332 1 1232221 1222233332222221111
Q ss_pred CCCcccEEEe-CcccccChhhHHHHHhhhccC-CccEEEEeccccccccCC--CCHH-HH----HHHHHHHHhCCCCCEE
Q 009843 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGH--DFRP-SY----RKLSSLRNYLPDVPIL 197 (524)
Q Consensus 127 ~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g~--~fr~-~~----~~l~~l~~~~~~~~ii 197 (524)
.. ...+.+. +|. +.-..+...+.+..... .+++||||=.|.+...+. +-|. .+ +.|+.+.+.+ ++|++
T Consensus 283 l~-~~~~~i~d~~~-~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~-~i~vi 359 (448)
T PRK05748 283 LS-DAPIYIDDTPG-IKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL-KVPVI 359 (448)
T ss_pred Hh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 11 1223222 222 22223444444444333 689999999999853322 1121 11 1222222222 78888
Q ss_pred EEeccC
Q 009843 198 ALTATA 203 (524)
Q Consensus 198 ~lSAT~ 203 (524)
++|-.-
T Consensus 360 ~lsQln 365 (448)
T PRK05748 360 ALSQLS 365 (448)
T ss_pred EecccC
Confidence 888754
No 304
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.69 E-value=0.27 Score=52.63 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHcC-----CCEEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHH
Q 009843 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (524)
Q Consensus 45 ~~i~~~l~g-----~d~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (524)
..+..++.| .-+++.+|+|+|||...+ ..++.++.++++++- -+-..|...+++.+|+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~lg~~~~---------- 318 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSWGIDFE---------- 318 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHcCCChH----------
Confidence 345555543 568999999999995432 233445668888873 3444566677777765310
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (524)
.....+. +.++...|....-..++..+.+.......+++|||=..-+
T Consensus 319 -----~~~~~g~--l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 319 -----EMEQQGL--LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred -----HHhhCCc--EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 1111221 4555555655444456666666666556889999998865
No 305
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.28 Score=53.06 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=29.5
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
+++.+......|.++.-.+.+.+.|+.. +..+ +-.++.||.|+|||.++.+
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~----------------i~~~~~~ha~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNA----------------LEQQRLHHAYLFTGTRGVGKTTLARI 57 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHH----------------HHcCCCCEEEEEECCCCCCHHHHHHH
Confidence 3444444445555555555555554442 2222 2358999999999976543
No 306
>PRK08760 replicative DNA helicase; Provisional
Probab=93.62 E-value=0.31 Score=52.04 Aligned_cols=146 Identities=19% Similarity=0.172 Sum_probs=67.8
Q ss_pred CCEEEEcCCCChHHHHHH-HH--H-hcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceeEec-cCCCHHHHHHHHHHhhc
Q 009843 54 RDCFCLMPTGGGKSMCYQ-IP--A-LAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS-STQTMQVKTKIYEDLDS 126 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp--~-l~~~~~~lvl~P~~~L~~q~~~~l~~~--gi~~~~~~-~~~~~~~~~~~~~~l~~ 126 (524)
.=+++.|.||.|||.-.+ +. + ...+..+++++.--+ ..|.+.++... ++....+. +.....+...+......
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs-~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~ 308 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS-ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKM 308 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC-HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345778899999996443 22 1 223556777764322 23444444432 23222121 22233332222221111
Q ss_pred CCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHH-----HHHHHHHHHHhCCCCCEEEEe
Q 009843 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-----SYRKLSSLRNYLPDVPILALT 200 (524)
Q Consensus 127 ~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-----~~~~l~~l~~~~~~~~ii~lS 200 (524)
-. ...+.+....-+.-..+...+........+++||||=.+.+..-+. +-|. ..+.|+.+.+.+ ++|++++|
T Consensus 309 l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~ls 386 (476)
T PRK08760 309 LK-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIALS 386 (476)
T ss_pred Hh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEEee
Confidence 11 1233332222222233444444444445689999999998853332 1121 123333333333 78888887
Q ss_pred cc
Q 009843 201 AT 202 (524)
Q Consensus 201 AT 202 (524)
-.
T Consensus 387 QL 388 (476)
T PRK08760 387 QL 388 (476)
T ss_pred cc
Confidence 43
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.62 E-value=0.9 Score=43.51 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=32.0
Q ss_pred cCCCEEEEcCCCChHHHH-HHHH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 52 SGRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~-~~lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
.|.-+++.+|+|+|||.. .++. .+..+.++++++.... ..+..+.+..+|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHhCC
Confidence 466789999999999965 2322 2345667888874332 2444555555543
No 308
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.49 Score=51.42 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.2
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
.+|.+.+....|.++..++.+...|.+. +..+ +..++.||.|+|||..+..
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~a----------------I~~~rl~hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNA----------------ILNNKLTHAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHH
Confidence 4566666666666666666666655552 2222 3478999999999976543
No 309
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.54 E-value=0.36 Score=45.93 Aligned_cols=130 Identities=25% Similarity=0.242 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCChHHHH-HH--HHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCC
Q 009843 53 GRDCFCLMPTGGGKSMC-YQ--IPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~-~~--lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (524)
|.-+++.+|+|+|||.- .+ ...+.+ +..+++++- .+-.++..+.++.+|.... .....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~---------------~~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE---------------EYEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH---------------HHHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH---------------HHhhcC-
Confidence 45689999999999953 33 345566 778888873 2233555666666654211 111111
Q ss_pred CcccEEEeCccccc----C-hhhHHHHHhhhccCCccEEEEeccccccccC--CCCHHHHHHHHHHHHhCCCCCEEEEec
Q 009843 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVPILALTA 201 (524)
Q Consensus 129 ~~~~ll~~tpe~v~----t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~ii~lSA 201 (524)
...++-..++... . ..+...+.+.......+++|||-...+.... ..+|..+..+....+.. + .++++|+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~-~t~llt~ 158 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-G-VTTLLTS 158 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-T-EEEEEEE
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-C-CEEEEEE
Confidence 1333334444331 2 2344444444443345899999998882221 22444444444444332 2 2445555
Q ss_pred c
Q 009843 202 T 202 (524)
Q Consensus 202 T 202 (524)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 5
No 310
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.51 E-value=0.6 Score=48.86 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=13.5
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
.+++.||+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4789999999999653
No 311
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.47 E-value=0.38 Score=53.36 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=36.6
Q ss_pred CCCCccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHH
Q 009843 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 1 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~~l 72 (524)
|..+..+|.+.+....|.++...+.+...|++.. ..+ +-.|+.||.|+|||.++..
T Consensus 1 m~m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI----------------~~~rl~HAYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 1 MRMKYKALYRKYRPKTFDDIVGQDHIVQTLKNII----------------KSNKISHAYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred CCcchhhHHHHhCCCCHHHhcCcHHHHHHHHHHH----------------HcCCCCeEEEEECCCCCcHHHHHHH
Confidence 4445566777767767766666666666655532 222 2358999999999977643
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.46 E-value=2.2 Score=40.84 Aligned_cols=51 Identities=20% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCCEEEEcCCCChHHHHH-HH--HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009843 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~-~l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (524)
|.-+++.+++|+|||.-. ++ -.+.++.++++++=-.. ..+..+.+..+|+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~g~~ 78 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESVKID 78 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHCCCC
Confidence 456788999999999532 32 23455777888774332 34556666666643
No 313
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.65 Score=50.64 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=27.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHH
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~ 208 (524)
.+..+++||||+|.+..- .+..|....+..|+.-+++|..|-...+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 355789999999999752 23444444555443334444445444433
No 314
>PRK06904 replicative DNA helicase; Validated
Probab=93.40 E-value=1.8 Score=46.18 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCEEEEcCCCChHHHHHH-H---HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-cc-CCCHHHHHHHHHHhh
Q 009843 54 RDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SS-TQTMQVKTKIYEDLD 125 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~-~~~~~~~~~~~~~l~ 125 (524)
.=+++.|.||.|||.-.+ + .+...+..+++++.--+ ..|.+.++-. .++...-+ .+ .....+...+.....
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~ 300 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP-AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVG 300 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHH
Confidence 345667899999996432 1 12223556777764221 2233333322 23332222 22 233333333222211
Q ss_pred cCCCcccEEEe--CcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HHH----HHHHHHHhCCCCCE
Q 009843 126 SGKPSLRLLYV--TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYR----KLSSLRNYLPDVPI 196 (524)
Q Consensus 126 ~~~~~~~ll~~--tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~----~l~~l~~~~~~~~i 196 (524)
.-..... +|. +|. +.-..+.....+.... +.+++||||=.+.+..-+. +-|. .+. .|+.+.+.+ ++|+
T Consensus 301 ~l~~~~~-l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipV 377 (472)
T PRK06904 301 MFKQKPN-LYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL-KVPV 377 (472)
T ss_pred HHhcCCC-EEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeE
Confidence 1100111 222 222 1112333333333332 3589999999998864332 2121 122 223333322 7888
Q ss_pred EEEec
Q 009843 197 LALTA 201 (524)
Q Consensus 197 i~lSA 201 (524)
+++|.
T Consensus 378 i~lsQ 382 (472)
T PRK06904 378 VALSQ 382 (472)
T ss_pred EEEEe
Confidence 88884
No 315
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.39 E-value=0.81 Score=47.63 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (524)
.+.+++.+|+|+|||+..-.
T Consensus 179 pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47799999999999986543
No 316
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.2 Score=48.72 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=42.9
Q ss_pred cCCCCCCHHHHHHHHHHH-------cCCCEEEEcCCCChHHHHHH--HHHhcCCCeEEEeCcHHHHHHHHHHHH
Q 009843 34 FGHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l-------~g~d~lv~apTGsGKTl~~~--lp~l~~~~~~lvl~P~~~L~~q~~~~l 98 (524)
|.|.-....++.++..+. ++.++++.+|+|+|||..+. .-.+.+.|.-+.++++-+|+.+.....
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 344444455666555443 56799999999999996433 222335678888888888888754443
No 317
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.28 E-value=0.57 Score=46.95 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCChHHHH
Q 009843 53 GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (524)
++.+++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999953
No 318
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.27 E-value=0.51 Score=50.52 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=43.5
Q ss_pred HHHHHHHHHHH-----cC----CCEEEEcCCCChHHHHHHHHHh----c---CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 41 DKQLDAIQAVL-----SG----RDCFCLMPTGGGKSMCYQIPAL----A---KPGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 41 ~~Q~~~i~~~l-----~g----~d~lv~apTGsGKTl~~~lp~l----~---~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
|||+.++..+. .| +.+++..|=|.|||......++ . .+..++++++++.-+....+.++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 67777777766 22 3588999999999964332221 1 2457889999999988888877764
No 319
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.25 E-value=0.9 Score=45.53 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=29.9
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~ 71 (524)
.||...+....+.++...++..+.++... ..+ ..+++.||+|+|||.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i----------------~~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYV----------------KEKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHH----------------hCCCCCeEEEECCCCCCHHHHHH
Confidence 45655555555555544555555555421 122 258999999999997643
No 320
>CHL00176 ftsH cell division protein; Validated
Probab=93.20 E-value=0.82 Score=50.51 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997654
No 321
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.20 E-value=0.74 Score=49.55 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||+...
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 322
>PRK05595 replicative DNA helicase; Provisional
Probab=93.19 E-value=0.41 Score=50.75 Aligned_cols=145 Identities=16% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCEEEEcCCCChHHHHHH-HH---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEec-cCCCHHHHHHHHHHhhc
Q 009843 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDS 126 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~-~~~~~~~~~~~~~~l~~ 126 (524)
.=+++.|.||.|||...+ +. +...+..+++++.--+ ..|...++-. .+++...+. +.....+...+......
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms-~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~ 280 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS-KEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGP 280 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC-HHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 335678899999996443 22 2234667777764311 1233333222 234332222 12223332222222111
Q ss_pred CCCcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEeccccccccC-CCCHH-HH----HHHHHHHHhCCCCCEEEE
Q 009843 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-HDFRP-SY----RKLSSLRNYLPDVPILAL 199 (524)
Q Consensus 127 ~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-~~fr~-~~----~~l~~l~~~~~~~~ii~l 199 (524)
-. ...+.+- ++. +.-..+...+.+......+++||||=.|.+..-+ .+-|. .+ +.|+.+...+ ++|++++
T Consensus 281 l~-~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~-~i~vi~l 357 (444)
T PRK05595 281 LA-AAKIFIDDTAG-VSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEM-ECPVIAL 357 (444)
T ss_pred Hh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-CCeEEEe
Confidence 10 1223222 222 2222344444444444459999999999986422 12221 12 2233333332 8889888
Q ss_pred ecc
Q 009843 200 TAT 202 (524)
Q Consensus 200 SAT 202 (524)
|..
T Consensus 358 sQL 360 (444)
T PRK05595 358 SQL 360 (444)
T ss_pred ecc
Confidence 754
No 323
>PRK08840 replicative DNA helicase; Provisional
Probab=93.17 E-value=1.2 Score=47.50 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCChHHHHHH-H---HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-ccCCCHHHHHHHHHHhh
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLD 125 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~ 125 (524)
|.=+++.|.||.|||.-.+ + .+...+..+++++.--+ ..|.+.++-. .++...-+ .+.....+...+.....
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMG 295 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 3445677899999996432 1 12233556777764322 2233333322 23322211 22333344333322111
Q ss_pred cCCCcccEE-EeCcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HHH----HHHHHHHhCCCCCEE
Q 009843 126 SGKPSLRLL-YVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYR----KLSSLRNYLPDVPIL 197 (524)
Q Consensus 126 ~~~~~~~ll-~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~----~l~~l~~~~~~~~ii 197 (524)
.-.....+. .-+|. +.-........+.... +.+++||||=.|.+...+. +-|. .+. .|+.+.+.+ ++|++
T Consensus 296 ~l~~~~~l~I~d~~~-~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi 373 (464)
T PRK08840 296 ILMEKKNMYIDDSSG-LTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKEL-NVPVV 373 (464)
T ss_pred HHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 100001221 11222 1112333333333322 3589999999999864332 1121 121 223333322 78888
Q ss_pred EEec
Q 009843 198 ALTA 201 (524)
Q Consensus 198 ~lSA 201 (524)
++|-
T Consensus 374 ~LsQ 377 (464)
T PRK08840 374 ALSQ 377 (464)
T ss_pred EEEe
Confidence 8883
No 324
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.10 E-value=0.093 Score=57.99 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=46.8
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (524)
.++++.||||+|||..+.+|.+.. ++.+||+=|--++........++.|-.+..++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 489999999999999999998776 678888889999988777777777766655443
No 325
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.06 E-value=0.74 Score=42.44 Aligned_cols=138 Identities=18% Similarity=0.149 Sum_probs=55.9
Q ss_pred cCCCEEEEcCCCChHHHHHH-HH-Hhc-----------CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ-IP-ALA-----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp-~l~-----------~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~ 118 (524)
.|.-+++.||+|+|||...+ +. .+. .+++++++..-.. ..+..+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 34557899999999995432 22 122 3567888875444 334455555432111 111111
Q ss_pred HHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCCCHHHH----HHHHHHHHhCCC
Q 009843 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSY----RKLSSLRNYLPD 193 (524)
Q Consensus 119 ~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~~~----~~l~~l~~~~~~ 193 (524)
.... .... ...++.............+..+.+.... ..+++||||=...+..-+.+....+ ..+..+...+ +
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~-~ 179 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEY-G 179 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHc-C
Confidence 1111 1110 1111111110011123344555555444 5699999999999876444433332 3334443332 4
Q ss_pred CCEEEEe
Q 009843 194 VPILALT 200 (524)
Q Consensus 194 ~~ii~lS 200 (524)
+.++++.
T Consensus 180 ~~vi~v~ 186 (193)
T PF13481_consen 180 VAVILVH 186 (193)
T ss_dssp -EEEEEE
T ss_pred CEEEEEE
Confidence 5555543
No 326
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.03 E-value=0.57 Score=51.29 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=26.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
.+..+++||||+|.+.... ...|....+.-|+.-+++|.+|-...+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a------~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA------FNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 3457899999999987522 244444555544333444544544433
No 327
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.96 E-value=0.18 Score=56.33 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.+++-|++|+.. ....++|.|+.|||||.+.. +.-+. .+..+++++.|+..+.+..+++..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 478999999876 34578999999999996643 22222 245799999999999998888765
No 328
>PHA02542 41 41 helicase; Provisional
Probab=92.96 E-value=0.86 Score=48.52 Aligned_cols=143 Identities=16% Similarity=0.075 Sum_probs=64.1
Q ss_pred EEEEcCCCChHHHHHHHH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCC
Q 009843 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (524)
+++.|++|.|||...+-- +...+..+++++ |...|+....... .++....+.. ....+.......+....
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~--~~i~~~~l~~-l~~~~~~~~~~~~~~~~- 268 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANL--LDVSLDDIDD-LSKAEYKAKMEKLRSKT- 268 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHH--cCCCHHHHhh-cCHHHHHHHHHHHHHHh-
Confidence 567789999999654422 223455677776 4444433322221 2333222211 22222222222221110
Q ss_pred cccE-EEeCcc-cccChhhHHHHHhhhccC--CccEEEEecccccccc-----CCCCHHHH----HHHHHHHHhCCCCCE
Q 009843 130 SLRL-LYVTPE-LTATPGFMSKLKKIHSRG--LLNLVAIDEAHCISSW-----GHDFRPSY----RKLSSLRNYLPDVPI 196 (524)
Q Consensus 130 ~~~l-l~~tpe-~v~t~~~~~~l~~~~~~~--~l~~iViDEaH~i~~~-----g~~fr~~~----~~l~~l~~~~~~~~i 196 (524)
...+ ++..|. .+....+...+.+..... .+++||||=.+.+..- +.+-...+ +.|+.+.+.+ ++|+
T Consensus 269 ~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel-~vpV 347 (473)
T PHA02542 269 QGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEH-DVVV 347 (473)
T ss_pred CCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHh-CCeE
Confidence 1122 222222 222233333333333222 3899999999988521 11111111 2333333333 7899
Q ss_pred EEEeccC
Q 009843 197 LALTATA 203 (524)
Q Consensus 197 i~lSAT~ 203 (524)
+++|-.-
T Consensus 348 i~lsQLn 354 (473)
T PHA02542 348 WTAAQTT 354 (473)
T ss_pred EEEEeeC
Confidence 9888653
No 329
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.95 E-value=0.31 Score=53.80 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHhcC------------CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~------------~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 123 (524)
.++.-..|-|||..-+.-.+.. .+.+++++|+ +++.|+..++.+..-..........+ +.+....
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g--r~kd~~e 231 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG--RTKDKSE 231 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc--cccccch
Q ss_pred hhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccC
Q 009843 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (524)
Q Consensus 124 l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~ 203 (524)
+.+ +++++.|+.++.+..+..-. +-++|+||||.+..+. .+.......+.....=.||+|+
T Consensus 232 l~~----~dVVltTy~il~~~~l~~i~--------w~Riildea~~ikn~~-------tq~~~a~~~L~a~~RWcLtgtP 292 (674)
T KOG1001|consen 232 LNS----YDVVLTTYDILKNSPLVKIK--------WLRIVLDEAHTIKNKD-------TQIFKAVCQLDAKYRWCLTGTP 292 (674)
T ss_pred hcC----CceEEeeHHHhhccccccee--------EEEEEeccccccCCcc-------hHhhhhheeeccceeeeecCCh
Q ss_pred ChhHHHHHHHHhC
Q 009843 204 APKVQKDVMESLC 216 (524)
Q Consensus 204 ~~~~~~~i~~~l~ 216 (524)
......++...+.
T Consensus 293 iqn~~~~lysl~~ 305 (674)
T KOG1001|consen 293 IQNNLDELYSLFK 305 (674)
T ss_pred hhhhHHHHHHHHH
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.94 E-value=0.18 Score=48.61 Aligned_cols=50 Identities=16% Similarity=-0.007 Sum_probs=33.5
Q ss_pred CCCEEEEcCCCChHHH-HHH--HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 53 GRDCFCLMPTGGGKSM-CYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 53 g~d~lv~apTGsGKTl-~~~--lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
|.-+++.+|+|+|||. +.+ ...+.++..+++++- -+-..+..+.+..+|.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGW 73 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCC
Confidence 4678999999999996 333 333556778888873 3444555666666654
No 331
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.88 E-value=0.17 Score=46.46 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=27.5
Q ss_pred cCCCCCCHHHHHHHHHH------HcCCCEEEEcCCCChHHHHHHHH--HhcCCCeEEEeCcHHHHHHH
Q 009843 34 FGHAQFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQIP--ALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~~------l~g~d~lv~apTGsGKTl~~~lp--~l~~~~~~lvl~P~~~L~~q 93 (524)
|.+...+..+...+..+ .+++++++.+|+|+|||..+... .+...|..+..++..+|+..
T Consensus 22 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 22 FDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp ------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred ccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 34444444444444433 24678999999999999654321 22335555555666677654
No 332
>PHA02533 17 large terminase protein; Provisional
Probab=92.80 E-value=0.45 Score=51.42 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHH-----hcCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~-----l~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.++|+|++.+..+..++-.++..+=..|||.+....+ ...+..+++++|+..-+....+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4778999999987666767888899999997654222 23356889999998888777776664
No 333
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.74 E-value=0.3 Score=56.22 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccccCCCccEEE
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD~p~v~~VI 331 (524)
.+.+++|.++|+.-|.+.++.+++. ++.+..++|+.+..++..+++.+.+|+.+|||+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3468999999999999998887753 678889999999999999999999999999999975 44457778888877
No 334
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.69 E-value=0.079 Score=62.81 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=78.1
Q ss_pred ccEEEEeCccccHHHHHHHHHhCC-CceEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEcccccccccCCC
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g-~~~~~~h~~l~-----------~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~ 326 (524)
-++|+|+..+..+..+.+.+++.+ ..+..+.|.+. ...+.+++..|....+++|++|+++..|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 468999999999999998888753 22333444432 123578888999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 009843 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (524)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~G 353 (524)
+..|++++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996653
No 335
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.68 E-value=1.4 Score=46.77 Aligned_cols=43 Identities=19% Similarity=0.059 Sum_probs=24.9
Q ss_pred CEEEEcCCCChHHHHHHHH--Hhc---CCCeEEEeCcHHHHHHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQIP--ALA---KPGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp--~l~---~~~~~lvl~P~~~L~~q~~~~l 98 (524)
.+++.|++|+|||...... .+. .+.+++++.+ ..++.+....+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 4889999999999432211 111 2345555544 56666555444
No 336
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=4.4 Score=39.12 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=47.0
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~ 92 (524)
-..+++++-..+..+.|+++-...-+.|.- -+.. +---+.+++.+|+|+|||+|+-.- ..+..-+.+-+=-.+|++
T Consensus 173 dvty~dvggckeqieklrevve~pll~per--fv~lgidppkgvllygppgtgktl~arav-anrtdacfirvigselvq 249 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPGTGKTLCARAV-ANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCCCchhHHHHHH-hcccCceEEeehhHHHHH
Confidence 344566788888888898876666555522 2211 112367999999999999986332 223333444444445554
Q ss_pred H
Q 009843 93 N 93 (524)
Q Consensus 93 q 93 (524)
.
T Consensus 250 k 250 (435)
T KOG0729|consen 250 K 250 (435)
T ss_pred H
Confidence 3
No 337
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.64 E-value=0.83 Score=51.66 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999764
No 338
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.62 E-value=0.34 Score=53.84 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEE
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI 331 (524)
.++.+||-++.+....++.+.++.. |.++..+|+++++.+|.....+..+|+.+|+|.|-.+- -.-+++...||
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEEE
Confidence 4578999999999999999999876 89999999999999999999999999999999995321 12234455544
No 339
>PRK09165 replicative DNA helicase; Provisional
Probab=92.61 E-value=0.82 Score=49.13 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCEEEEcCCCChHHHHHHH---HH-hc--------------CCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-ccCC
Q 009843 54 RDCFCLMPTGGGKSMCYQI---PA-LA--------------KPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQ 112 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l---p~-l~--------------~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~ 112 (524)
.=+++.|+||.|||.-.+- -+ .. .+..+++++.--+ ..|.+.++.. .+++...+ .+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3467789999999954331 11 11 1356777764222 2333444432 24433222 2223
Q ss_pred CHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCC---CCHH-HH----HHH
Q 009843 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRP-SY----RKL 184 (524)
Q Consensus 113 ~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~fr~-~~----~~l 184 (524)
...+...+......-. ...+.+...--+.-..+...+.+......+++||||=.|.+..-+. +-|. .+ +.|
T Consensus 297 ~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~L 375 (497)
T PRK09165 297 SEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGL 375 (497)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHH
Confidence 3333333222221111 1223322211121123334444444445689999999998864321 2221 12 223
Q ss_pred HHHHHhCCCCCEEEEecc
Q 009843 185 SSLRNYLPDVPILALTAT 202 (524)
Q Consensus 185 ~~l~~~~~~~~ii~lSAT 202 (524)
+.+.+.+ ++|++++|-.
T Consensus 376 K~lAkel-~ipVi~lsQL 392 (497)
T PRK09165 376 KALAKEL-NIPVIALSQL 392 (497)
T ss_pred HHHHHHh-CCeEEEeecc
Confidence 3333332 7888888753
No 340
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.60 E-value=1.2 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.4
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA 74 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (524)
+.+++.+|+|+|||+..-.-+
T Consensus 488 ~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999997654333
No 341
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.58 E-value=0.98 Score=50.92 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
..++++.+|+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997653
No 342
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=1 Score=45.35 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHH----cC---CCEEEEcCCCChHHHHH
Q 009843 39 FRDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 39 ~r~~Q~~~i~~~l----~g---~d~lv~apTGsGKTl~~ 70 (524)
..|||...+..+. +| +-.++.+|.|.||+..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA 41 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI 41 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH
Confidence 3567776665544 44 34679999999999654
No 343
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.43 E-value=0.21 Score=47.16 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.4
Q ss_pred CEEEEcCCCChHHHHHHHHHh
Q 009843 55 DCFCLMPTGGGKSMCYQIPAL 75 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l 75 (524)
++++.+|+|.|||..+.+-+-
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 689999999999966554443
No 344
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.40 E-value=6.2 Score=39.77 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHh-------CCCCCEEEEeccCChhHHHHHHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LPDVPILALTATAAPKVQKDVME 213 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-------~~~~~ii~lSAT~~~~~~~~i~~ 213 (524)
...++|+||=+-.... -......|..+.+. .|.-.++.++||...........
T Consensus 195 ~~~D~ViIDTaGr~~~----~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHN----KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcC----CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 4478999998877532 11112333333322 23334789999977665554433
No 345
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.39 E-value=1.3 Score=48.31 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=23.7
Q ss_pred CEEEEcCCCChHHHHHHH-H-HhcC--CCeEEEeCcHHHHHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI-P-ALAK--PGIVLVVSPLIALMENQVIG 97 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l-p-~l~~--~~~~lvl~P~~~L~~q~~~~ 97 (524)
.+++.+++|+|||..... . .+.. .+..++.++...++++....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH
Confidence 388999999999954221 1 1111 23334444455566554433
No 346
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=1.2 Score=48.01 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q 93 (524)
+.+++.+|+|+|||+.....+...+...+-+... +|+..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 4689999999999988766666544444444333 66554
No 347
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.22 E-value=0.15 Score=56.11 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCC
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQ 112 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~ 112 (524)
.++++.||||+|||..+.+|.+.. ++.+||+=|.-++..-.....++.|-++..++...
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~~ 284 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTN 284 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 578999999999999999998876 77888888999988777776777777766666543
No 348
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.17 E-value=0.8 Score=48.39 Aligned_cols=146 Identities=19% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCChHHHHHH-HH--Hh-cCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEe-ccCCCHHHHHHHHHHh
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IP--AL-AKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDL 124 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp--~l-~~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~l 124 (524)
|.=+++.|+||+|||.-.+ +. +. ..+..+++++. ...++....... .++....+ .+.....+...+....
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~~~~~a~ 272 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWEKLTSAA 272 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHh--cCCCHHHhccCCCCHHHHHHHHHHH
Confidence 3446788999999995433 21 12 23556777763 334443322211 23332111 1122222222221111
Q ss_pred hcCCCcccEE-EeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCH-HHH----HHHHHHHHhCCCCCEE
Q 009843 125 DSGKPSLRLL-YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSY----RKLSSLRNYLPDVPIL 197 (524)
Q Consensus 125 ~~~~~~~~ll-~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-~~~----~~l~~l~~~~~~~~ii 197 (524)
.... ...+. ..+|. +.-..+...+........+++||||=.+.+...+. +-| ..+ +.|+.+...+ ++|++
T Consensus 273 ~~l~-~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~-~i~vi 349 (434)
T TIGR00665 273 GKLS-EAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL-NVPVI 349 (434)
T ss_pred HHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 1111 11222 22222 11123444444444444589999999988853221 112 112 2233333332 78888
Q ss_pred EEeccC
Q 009843 198 ALTATA 203 (524)
Q Consensus 198 ~lSAT~ 203 (524)
++|-..
T Consensus 350 ~lsqln 355 (434)
T TIGR00665 350 ALSQLS 355 (434)
T ss_pred EEeccC
Confidence 887653
No 349
>PRK08006 replicative DNA helicase; Provisional
Probab=92.15 E-value=1.8 Score=46.08 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=65.3
Q ss_pred CCEEEEcCCCChHHHHHH-HH---HhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEe-ccCCCHHHHHHHHHHhh
Q 009843 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~l~ 125 (524)
.=+++-|.+|.|||.-.+ +. +...+..+++++. ...|+....... .++...-+ .+.....+...+.....
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL--SRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 335667899999995433 11 2233556777764 334443333222 23332222 22334444333322211
Q ss_pred cCCCcccEEEeCcccccC-hhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HH----HHHHHHHHhCCCCCEE
Q 009843 126 SGKPSLRLLYVTPELTAT-PGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPIL 197 (524)
Q Consensus 126 ~~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l~~~~~~~~ii 197 (524)
.-.....+ |..+.--.| ........+.... +.+++||||=.|.+..-+. +-|. .+ +.|+.+.+.+ ++|++
T Consensus 303 ~~~~~~~l-~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi 380 (471)
T PRK08006 303 ILLEKRNM-YIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL-QVPVV 380 (471)
T ss_pred HHHhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 11001222 222211112 2233333333332 3589999999999853221 2222 12 2233333332 88899
Q ss_pred EEecc
Q 009843 198 ALTAT 202 (524)
Q Consensus 198 ~lSAT 202 (524)
++|-.
T Consensus 381 ~LsQL 385 (471)
T PRK08006 381 ALSQL 385 (471)
T ss_pred EEEec
Confidence 88843
No 350
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.14 E-value=0.87 Score=51.54 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.++.+++.+|+|+|||....
T Consensus 211 ~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCceEEEECCCCCChHHHHH
Confidence 34679999999999997543
No 351
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.03 E-value=0.77 Score=49.90 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=64.5
Q ss_pred cCCccEEEEeCccccHHHHH----HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccccCCCccEE
Q 009843 256 NGDTCAIVYCLERTTCDELS----AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~----~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD~p~v~~V 330 (524)
..+.++...++|---|++.+ +.|...|+++..+.|.+..+.|.++++...+|+++++|.|-| +...+++.+..+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 34667899999976555544 555566999999999999999999999999999999999987 6778999998888
Q ss_pred E
Q 009843 331 C 331 (524)
Q Consensus 331 I 331 (524)
|
T Consensus 389 I 389 (677)
T COG1200 389 I 389 (677)
T ss_pred E
Confidence 7
No 352
>CHL00181 cbbX CbbX; Provisional
Probab=92.01 E-value=2.6 Score=41.81 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (524)
|.++++.+|+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34589999999999977643
No 353
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.01 E-value=0.23 Score=56.05 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
..+++-|++|+... ...++|.|..|||||.+.. +.-|. .+..+++|+-|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 46999999999753 4579999999999996533 22222 2467999999999999988887763
No 354
>PRK05636 replicative DNA helicase; Provisional
Probab=91.98 E-value=0.74 Score=49.43 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=64.5
Q ss_pred EEEEcCCCChHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEe-ccCCCHHHHHHHHHHhhcC
Q 009843 56 CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~l~~~ 127 (524)
+++.|.||.|||.-.+ +. ++..+..+++++ |...|+...+... .++....+ .+.....+...+......-
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~--s~v~~~~i~~g~l~~~e~~~~~~a~~~l 345 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE--AEVRLSDMRGGKMDEDAWEKLVQRLGKI 345 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 5778899999995333 22 223355666774 4444444433221 12322111 2223333333332222211
Q ss_pred CCcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHHH-----HHHHHHHHHhCCCCCEEEEe
Q 009843 128 KPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPS-----YRKLSSLRNYLPDVPILALT 200 (524)
Q Consensus 128 ~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~~-----~~~l~~l~~~~~~~~ii~lS 200 (524)
. ...+.+- +|. +.-..+.....++.....+++||||=.|.+..-.. +-|.. .+.|+.+.+.+ ++|++++|
T Consensus 346 ~-~~~l~I~d~~~-~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~ls 422 (505)
T PRK05636 346 A-QAPIFIDDSAN-LTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKEL-DVPLIAIS 422 (505)
T ss_pred h-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeEEEEe
Confidence 1 1222221 221 11122333344443445599999999999863211 11221 12233333332 78888887
Q ss_pred c
Q 009843 201 A 201 (524)
Q Consensus 201 A 201 (524)
.
T Consensus 423 Q 423 (505)
T PRK05636 423 Q 423 (505)
T ss_pred e
Confidence 4
No 355
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=91.95 E-value=0.24 Score=55.80 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
..+++-|++|+.. ....++|.|..|||||.+.. +.-|. ....+++++.|+..+....+++.+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999975 34579999999999996532 22221 2457999999999998888887663
No 356
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=1.8 Score=47.66 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
..|+.+|.|+|||.+..
T Consensus 40 a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 40 AYLFTGPRGVGKTSTAR 56 (585)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35899999999997654
No 357
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.89 E-value=2.2 Score=45.11 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.||+|+|||....
T Consensus 132 ~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred eEEEEcCCCCcHHHHHH
Confidence 58999999999996543
No 358
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.86 E-value=0.21 Score=54.84 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=46.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcC-CceeEeccC
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSST 111 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~g-i~~~~~~~~ 111 (524)
.++++.||||+|||..+.+|.+.. ++.+||+=|.-++..-.....++.| -++..++..
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP~ 271 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDPT 271 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 589999999999999999998776 7788999999999776666556666 555555543
No 359
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.83 E-value=3.8 Score=42.84 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=32.3
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (524)
..+.+.||.+-. .+.-......+..+.... +...++.++||.......++...+.
T Consensus 269 ~~d~VLIDTaGr----sqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 269 GKHMVLIDTVGM----SQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred CCCEEEecCCCC----CcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 467899998621 111112234455544322 2334788999998888777776553
No 360
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.77 E-value=1.3 Score=46.42 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=51.2
Q ss_pred CccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccccCCCc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFG-MGIDRKDV 327 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~-----a~~-~GiD~p~v 327 (524)
+.-++|.|+|++-|.++....++ .|+++++.|||.+..++..-++ -...+||||+ ++- .++|+.+|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 33467788999999888765544 4889999999999887665554 4567999997 222 25777777
Q ss_pred cEEE
Q 009843 328 RLVC 331 (524)
Q Consensus 328 ~~VI 331 (524)
.++|
T Consensus 372 S~LV 375 (731)
T KOG0339|consen 372 SYLV 375 (731)
T ss_pred eEEE
Confidence 7765
No 361
>PRK04328 hypothetical protein; Provisional
Probab=91.70 E-value=0.14 Score=49.75 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=31.8
Q ss_pred cCCCEEEEcCCCChHHH-HHHH--HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 52 SGRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl-~~~l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
.|.-+++.+|+|+|||. +.++ -.+..+..+++++ +-+-..+..+.++.+|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 35668899999999984 4433 3355667777776 22333344555566554
No 362
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.62 E-value=5.6 Score=41.90 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=28.4
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHH
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKD 210 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~ 210 (524)
.++||||.+-.... -.....++..+.... |+..++.++||...+..+.
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 38999999955422 122234455554433 4556788888887654443
No 363
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=1.3 Score=46.72 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=37.1
Q ss_pred hHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhC----CCCCEEEEeccCChhHHH
Q 009843 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYL----PDVPILALTATAAPKVQK 209 (524)
Q Consensus 146 ~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~~----~~~~ii~lSAT~~~~~~~ 209 (524)
+..+|.......--.+|.|||.|.+..--..--..| ..|..+.... ++-.||.+-||--|+..+
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 344555444444577899999999965111111112 2233333322 367899999998777544
No 364
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.56 E-value=1.4 Score=47.37 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (524)
.++.+|.|+|||.+..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999997653
No 365
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.53 E-value=2.1 Score=42.09 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHH
Q 009843 56 CFCLMPTGGGKSMC 69 (524)
Q Consensus 56 ~lv~apTGsGKTl~ 69 (524)
++|.+|||||||.+
T Consensus 128 ILVTGpTGSGKSTT 141 (353)
T COG2805 128 ILVTGPTGSGKSTT 141 (353)
T ss_pred EEEeCCCCCcHHHH
Confidence 78899999999954
No 366
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.46 E-value=1.8 Score=44.92 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
+.+++.+|+|+|||+....
T Consensus 166 ~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CceEEECCCCCChHHHHHH
Confidence 5699999999999976543
No 367
>PRK06321 replicative DNA helicase; Provisional
Probab=91.46 E-value=1.5 Score=46.66 Aligned_cols=153 Identities=14% Similarity=0.185 Sum_probs=70.9
Q ss_pred HHHHHHcC---CC-EEEEcCCCChHHHHHHHHH----hcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-cCCC
Q 009843 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQT 113 (524)
Q Consensus 46 ~i~~~l~g---~d-~lv~apTGsGKTl~~~lp~----l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (524)
.+..+..| .+ +++.|.+|.|||.-.+--+ ...+..+++++ |...|+...... ..+++..-+. ....
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~--~s~v~~~~i~~~~l~ 292 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICS--RSEVESKKISVGDLS 292 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh--hcCCCHHHhhcCCCC
Confidence 34444443 34 5677899999995433211 12355677776 344444432221 1233322221 2233
Q ss_pred HHHHHHHHHHhhcCCCcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC--CCHHHHHHHHHHHHh
Q 009843 114 MQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNY 190 (524)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~--~fr~~~~~l~~l~~~ 190 (524)
..+...+......-. ...+.+. +| -+.-..+...+........+++||||=.+.+..-+. ........+..+.+.
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~-~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~ 370 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQP-GLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRM 370 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHH
Confidence 333333222222111 1223222 22 122223444444444445699999999999864321 111112233333222
Q ss_pred CC------CCCEEEEecc
Q 009843 191 LP------DVPILALTAT 202 (524)
Q Consensus 191 ~~------~~~ii~lSAT 202 (524)
+. ++|++++|..
T Consensus 371 LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 371 LKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHhCCcEEEEeec
Confidence 21 7888888865
No 368
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.45 E-value=1.5 Score=44.52 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHH
Q 009843 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~--g---~d~lv~apTGsGKTl~~~ 71 (524)
+.|||...++.+.. + +-.++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 35788888877653 3 357899999999996543
No 369
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.38 E-value=9.9 Score=40.52 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=28.4
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHh
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
..+.++||.+=.. +.-......+..+.... |...++.|+||.......++...+
T Consensus 334 d~d~VLIDTaGr~----~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f 388 (484)
T PRK06995 334 NKHIVLIDTIGMS----QRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY 388 (484)
T ss_pred CCCeEEeCCCCcC----hhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh
Confidence 4578899985331 11111112222222221 223578899998887766666554
No 370
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.33 E-value=5.1 Score=41.00 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=25.1
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
.+...++||||||.+..-. ...|-...+.-|...+++|.++.+
T Consensus 139 ~g~~rVviIDeAd~l~~~a------anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA------ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred cCCceEEEEEchhhcCHHH------HHHHHHHHhcCCCCceEEEEECCh
Confidence 4567899999999985421 233444445544444444444443
No 371
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.33 E-value=1.3 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPA 74 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~ 74 (524)
.+.+++.+|+|+|||+....-+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA 238 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVA 238 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998764433
No 372
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.32 E-value=0.15 Score=55.62 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=55.3
Q ss_pred HHHHhcCCCcEEEEcccccccccCCCccE--------EEEeCCCCCHHHHHHHHhhcCCCCC---CceEEEEeccccHHH
Q 009843 301 LDDWISSRKQVVVATVAFGMGIDRKDVRL--------VCHFNIPKSMEAFYQESGRAGRDQL---PSKSLLYYGMDDRRR 369 (524)
Q Consensus 301 ~~~f~~g~~~VlVaT~a~~~GiD~p~v~~--------VI~~~~p~s~~~y~Q~~GRagR~G~---~~~~i~~~~~~d~~~ 369 (524)
-++|++|+-.|-|-..+++-||-+..-|. =|-..+|+|...-+|..||+.|.++ |..++++-...-..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 46799999999999999999998765443 4567799999999999999999976 344555544444444
Q ss_pred HHHHH
Q 009843 370 MEFIL 374 (524)
Q Consensus 370 ~~~l~ 374 (524)
+..++
T Consensus 930 FAS~V 934 (1300)
T KOG1513|consen 930 FASIV 934 (1300)
T ss_pred HHHHH
Confidence 44444
No 373
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.26 E-value=1.6 Score=43.89 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHH
Q 009843 38 QFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~---d~lv~apTGsGKTl~~ 70 (524)
.+.|||...+..+. +++ -.++.+|.|.||+..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 35678877776654 333 5789999999999654
No 374
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.22 E-value=0.99 Score=45.41 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=26.1
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHH-cC--CCEEEEcCCCChHHHHHHHHHh
Q 009843 29 LLRWHFGHAQFRDKQLDAIQAVL-SG--RDCFCLMPTGGGKSMCYQIPAL 75 (524)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~~l-~g--~d~lv~apTGsGKTl~~~lp~l 75 (524)
.|..++|-+++- .|.-.+..++ ++ -.+++.+|.|+|||..+-+.+.
T Consensus 136 tL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 136 TLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred hHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 444555543332 2333343433 33 3689999999999966544443
No 375
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.19 E-value=1.8 Score=44.54 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=29.5
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~ 70 (524)
.+++..+....+.++..++.+.+.+.+.. ..| +.+++.||.|+|||...
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i----------------~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAI----------------ENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHH----------------HcCCCCeEEEEECCCCCCHHHHH
Confidence 34444555555555555555555555422 223 35789999999999654
No 376
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.13 E-value=1.6 Score=47.98 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccC
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~ 203 (524)
.+..+++||||+|.+..-. ...|....+.-|+.-+++|.+|-
T Consensus 125 ~~~~KVvIIdEad~Lt~~a------~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA------FNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred cCCCEEEEEeChhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCC
Confidence 3457899999999986521 23344444444443355555553
No 377
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.09 E-value=0.2 Score=55.29 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=44.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (524)
.++++.||||+|||..+.+|.|.. .+.+||+=|--++........++.| .+..++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 579999999999999999998876 7788899999999887766666666 444333
No 378
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.09 E-value=1.7 Score=44.81 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (524)
.+.+++.+|+|+|||.....
T Consensus 156 p~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35699999999999976543
No 379
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.09 E-value=0.31 Score=52.64 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=29.9
Q ss_pred HcCCC-CCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHH
Q 009843 33 HFGHA-QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 33 ~fg~~-~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~ 71 (524)
.|+|+ +|..+|.+.+..+. +|+-.++..|||+||||.-+
T Consensus 9 ~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLi 52 (821)
T KOG1133|consen 9 EFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLI 52 (821)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHH
Confidence 35553 67788998876643 68888999999999998644
No 380
>PRK08506 replicative DNA helicase; Provisional
Probab=91.06 E-value=1.1 Score=47.87 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=65.0
Q ss_pred CCEEEEcCCCChHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-ccCCCHHHHHHHHHHhhcC
Q 009843 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~~~ 127 (524)
.=+++.|.||.|||.-.+- -+...+..+++++.-- =..|...++-. .+++..-+ .+.....+...+......-
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEM-s~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l 271 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEM-PAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDEL 271 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3467788999999964331 2233455677776421 12233333322 23332211 1222333332222221111
Q ss_pred CCcccEEE-eCcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCCCHHHHHH-------HHHHHHhCCCCCEEE
Q 009843 128 KPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRK-------LSSLRNYLPDVPILA 198 (524)
Q Consensus 128 ~~~~~ll~-~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~~~~~-------l~~l~~~~~~~~ii~ 198 (524)
. ...+.+ -+|. +........+.++... +.+++||||=.+.+..-+. +...... |+.+.+.+ ++|+++
T Consensus 272 ~-~~~l~I~d~~~-~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~LK~lAkel-~ipVi~ 347 (472)
T PRK08506 272 S-KKKLFVYDSGY-VNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGLKLLAREL-DIPIIA 347 (472)
T ss_pred H-cCCeEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHHHHHHHHh-CCcEEE
Confidence 1 012222 1221 2122333333333332 3589999999998864331 2222222 33333332 788888
Q ss_pred Eecc
Q 009843 199 LTAT 202 (524)
Q Consensus 199 lSAT 202 (524)
+|-.
T Consensus 348 lsQL 351 (472)
T PRK08506 348 LSQL 351 (472)
T ss_pred Eeec
Confidence 8854
No 381
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.23 Score=48.97 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.9
Q ss_pred CCEEEEcCCCChHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp 73 (524)
.++++.+|||||||+.++.-
T Consensus 98 SNILLiGPTGsGKTlLAqTL 117 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTL 117 (408)
T ss_pred ccEEEECCCCCcHHHHHHHH
Confidence 47999999999999887643
No 382
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.05 E-value=1.5 Score=51.94 Aligned_cols=75 Identities=9% Similarity=0.106 Sum_probs=62.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccccCCCccEEE
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD~p~v~~VI 331 (524)
.+.+++|.++|+.-+.++++.+++. ++.+..++++.+..++..+++...+|..+|||+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999999888753 567888999999999999999999999999999974 33446667777776
No 383
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.05 E-value=0.4 Score=53.61 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HH-Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp-~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.+++-|++++.+ ....++|.|..|||||.+-. +. .+. ....+++|+.|+..+.+..+++.+
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 378999999875 35689999999999996533 21 121 245789999999888887777765
No 384
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.02 E-value=1.7 Score=47.44 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
-.++.+|.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 385
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.99 E-value=0.63 Score=51.90 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHH---h----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L----AKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~---l----~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
..+++.|++|+.. ...+++|.|..|||||.+..--+ + ..+..+++++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999864 33568999999999997643221 1 1255899999999999988888765
No 386
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.94 E-value=0.29 Score=56.19 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=83.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHhc---------------------CCCeEEEeCcHHHHHHHHHHHHHH---cCCceeEe
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~---------------------~~~~~lvl~P~~~L~~q~~~~l~~---~gi~~~~~ 108 (524)
|++++..-..|.|||.+-+.-.+. ..|.||||+|. ++..||..++.. .++++.++
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 567788889999999875432221 16789999996 666788988876 23444433
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH---------HHHHhhh-c-cCC-----ccEEEEeccccccc
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM---------SKLKKIH-S-RGL-----LNLVAIDEAHCISS 172 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~---------~~l~~~~-~-~~~-----l~~iViDEaH~i~~ 172 (524)
-+.....-... ..+ .+++|+.+|..++.+.-.. .+..+.+ . ..+ +=.|++|||+.+-.
T Consensus 453 ~Girk~~~~~~--~el----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP--FEL----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhhcccCc--hhh----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 32211100000 111 2488888887766542111 1111100 0 011 11499999999754
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHH
Q 009843 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (524)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (524)
-. ........++|.+-.=++|+||-.. ..++.-
T Consensus 527 ss-------S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~ 559 (1394)
T KOG0298|consen 527 SS-------SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFP 559 (1394)
T ss_pred hH-------HHHHHHHHHhhhhceeeecCCchhh-hhhhHH
Confidence 21 4455556667777788999998776 444433
No 387
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.88 E-value=3.4 Score=45.22 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH--HHHHhc---CCCeEEEeCcHHHHHHHHHH
Q 009843 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVI 96 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~--~lp~l~---~~~~~lvl~P~~~L~~q~~~ 96 (524)
..+.+.+.|+.+|+...+... +++ ..+.+-.++..|==.|||..- ++..+. .+-.++++.|.+..++...+
T Consensus 227 ~a~r~~~~lk~~Fdi~~~s~~---~~~-~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 227 HAERVERFLRTVFNTPLFSDA---AVR-HFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred HHHHHHHHHHHHcCCccccHH---HHH-HhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 346678889999999877742 233 345567788889999999743 233222 47789999999999998888
Q ss_pred HHHHc
Q 009843 97 GLKEK 101 (524)
Q Consensus 97 ~l~~~ 101 (524)
++...
T Consensus 303 eI~~~ 307 (738)
T PHA03368 303 EIGAR 307 (738)
T ss_pred HHHHH
Confidence 87763
No 388
>PHA00350 putative assembly protein
Probab=90.74 E-value=1.1 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHH----HHHhcCCC
Q 009843 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~----lp~l~~~~ 79 (524)
.++.+..|+|||+... +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999997643 56666554
No 389
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.71 E-value=2.1 Score=42.39 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999776
No 390
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.49 E-value=0.68 Score=50.42 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHH-HHHH
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVI-GLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~-~l~~ 100 (524)
..+|+|.+.+.++... +.+.+..++-+|||.+.+..+. ...+.++++.|+..++++..+ +|..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 5789999999998654 5688889999999985443221 237889999999999998774 3443
No 391
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.46 E-value=2.5 Score=43.13 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=28.3
Q ss_pred ccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHH
Q 009843 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~ 70 (524)
||........+.++.-++.+.+.|++. +..| +..++.||.|+|||...
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~----------------~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNA----------------IKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCCHHHHH
Confidence 455554555555554455555544442 1223 34689999999999654
No 392
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.44 E-value=2.4 Score=44.10 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=28.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHH
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~ 210 (524)
.+..++++|||+|.+..-. -..|-...+.-|+..++++++|-+..+...
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 3457899999999986421 123333444444445667777665444433
No 393
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.41 E-value=1 Score=43.29 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCC----CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcC-CCCCCc
Q 009843 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (524)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag-R~G~~~ 356 (524)
++.+..++++.+... -.|.++. ..|+|.-+.+++|+-+++........-++...++.|+.=.-| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 566777776554432 3444443 779999999999999999999999999999999999987777 777788
Q ss_pred eEEEEeccccHHHHHHHHH
Q 009843 357 KSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 357 ~~i~~~~~~d~~~~~~l~~ 375 (524)
.|-+|.+++-...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8999998776666666653
No 394
>PRK07004 replicative DNA helicase; Provisional
Probab=90.35 E-value=1.7 Score=46.24 Aligned_cols=145 Identities=22% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCChHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEe-ccCCCHHHHHHHHHHh
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDL 124 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~l 124 (524)
|.=+++.|.||.|||.-.+ +. ++..+..+++++ |...|+....... .++....+ .+.....+...+....
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~~~~~a~ 290 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWPKLTHAV 290 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3446778899999996433 21 223455677776 3444444333221 12222211 2233333333322221
Q ss_pred hcCCCcccEEEe-CcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HH----HHHHHHHHhCCCCCE
Q 009843 125 DSGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPI 196 (524)
Q Consensus 125 ~~~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l~~~~~~~~i 196 (524)
..-. ...+.+. +|. +..........++... +.+++||||=.|.+...+. +-|. .+ +.|+.+.+.+ ++|+
T Consensus 291 ~~l~-~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipV 367 (460)
T PRK07004 291 QKMS-EAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL-DVPV 367 (460)
T ss_pred HHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeE
Confidence 1111 1233322 221 2112333333333332 3589999999999864321 1121 12 2223332222 7888
Q ss_pred EEEecc
Q 009843 197 LALTAT 202 (524)
Q Consensus 197 i~lSAT 202 (524)
+++|--
T Consensus 368 i~lsQL 373 (460)
T PRK07004 368 IALSQL 373 (460)
T ss_pred EEEecc
Confidence 888753
No 395
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.22 E-value=0.78 Score=46.21 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHH--HHHHh---cCCCeEEEeCcHHHH
Q 009843 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l-~g~d~lv~apTGsGKTl~~--~lp~l---~~~~~~lvl~P~~~L 90 (524)
.+.+.|.+.+..+. .+.++++.++||||||... ++..+ ....+++++=...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 47788888776655 4578999999999999532 22222 123455655555554
No 396
>PRK14701 reverse gyrase; Provisional
Probab=90.20 E-value=1.6 Score=53.32 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=54.2
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~ 318 (524)
.+.+++|.++|+.-+.++++.|+.. ++.+..+||+++..++..+++.+.+|+.+|||+|+.+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 4557999999999999999888762 4678899999999999999999999999999999853
No 397
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.19 E-value=2.2 Score=39.34 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=37.2
Q ss_pred HHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 150 l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
..+....+.++++|+||+=...++|. -+. ..+..+....|.---+.||+--.|.-
T Consensus 107 a~~~l~~~~ydlvVLDEi~~Al~~gl--i~~-eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 107 AKRMLADESYDLVVLDELTYALKYGY--LDV-EEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHCCC--ccH-HHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 34445567799999999999888873 222 34445555666656778888866653
No 398
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.15 E-value=2.3 Score=40.86 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHcCC-CEEEEcCCCChHHHHHH--HHHhcCCCeEEEeCc
Q 009843 50 VLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSP 86 (524)
Q Consensus 50 ~l~g~-d~lv~apTGsGKTl~~~--lp~l~~~~~~lvl~P 86 (524)
+..|+ -+.+.++-|+|||..-. +..+..+.+++|+.|
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~ 86 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID 86 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec
Confidence 33555 57889999999998765 222333445554444
No 399
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.12 E-value=3.4 Score=39.18 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=32.8
Q ss_pred CCCEEEEcCCCChHHH-HHHHH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 53 g~d~lv~apTGsGKTl-~~~lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
|.-+++.+++|+|||. +.++. .+.++..+++++--. -.++..+.+..+|.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCC
Confidence 4567889999999984 44443 345667788887543 34555666666654
No 400
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.10 E-value=12 Score=36.73 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=27.6
Q ss_pred CEEEEcCCCChHHHHHH-HHH-h-cCCCeEEEeC--cHHHHHHHHHHHH-HHcCCc
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS--PLIALMENQVIGL-KEKGIA 104 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~-l-~~~~~~lvl~--P~~~L~~q~~~~l-~~~gi~ 104 (524)
-+++.+|+|+|||.+.. +.. + ..+.+++++. +.+.-..+|...+ +..+++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 46778999999996543 222 2 2345666665 3444444444433 334533
No 401
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.01 E-value=1.1 Score=48.11 Aligned_cols=64 Identities=23% Similarity=0.178 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHH--HHhc-------CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009843 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--PALA-------KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (524)
Q Consensus 42 ~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~l--p~l~-------~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (524)
-|-++|.. -.++-++|++..|||||.+++- +-|. ..+.++|+.|.+-++.-....|-++|....
T Consensus 216 EQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~~V 288 (747)
T COG3973 216 EQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEEGV 288 (747)
T ss_pred hHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccCce
Confidence 34444433 2345689999999999977552 2221 244599999999999988888888876543
No 402
>PRK06749 replicative DNA helicase; Provisional
Probab=89.95 E-value=2.9 Score=44.00 Aligned_cols=33 Identities=15% Similarity=-0.131 Sum_probs=20.0
Q ss_pred CCEEEEcCCCChHHHHHHH---HHhcCCCeEEEeCc
Q 009843 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSP 86 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l---p~l~~~~~~lvl~P 86 (524)
.=+++-|.||.|||.-.+- -+...+..+++++.
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSl 222 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSL 222 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEe
Confidence 3356778999999954331 12223456777764
No 403
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.95 E-value=1.9 Score=47.55 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
-+++.+|+|+|||..+.+
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 388999999999976543
No 404
>PRK09087 hypothetical protein; Validated
Probab=89.92 E-value=2.3 Score=40.58 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.-+++.+|+|+|||.-.+
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999996543
No 405
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.92 E-value=9 Score=40.18 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=29.4
Q ss_pred CEEEEcCCCChHHHHHH-HHH-hcC-CCeEEEeC--cHHHHHHHHHHHHHH-cCCce
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPA-LAK-PGIVLVVS--PLIALMENQVIGLKE-KGIAG 105 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~-l~~-~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~ 105 (524)
-+++++++|+|||.+.. +.. +.. +.++++++ |.+.-+.+|.+.+.. .+++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~ 158 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF 158 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE
Confidence 36789999999985433 332 222 44555554 456656666554443 34443
No 406
>PRK09354 recA recombinase A; Provisional
Probab=89.82 E-value=1.4 Score=44.76 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=55.0
Q ss_pred HHHHHHc-C-----CCEEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHH
Q 009843 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (524)
Q Consensus 46 ~i~~~l~-g-----~d~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (524)
.+..++. | +-+.+.+|+|+|||...+ ..+...++.+++|..--++-.. .++.+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCH-----------
Confidence 4556666 3 457899999999995433 2233457888888876666542 344444431
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
-++++..|... ...+..+......+.+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~~--Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTG--EQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 12333333211 1122333344445668999999877653
No 407
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.69 E-value=2.2 Score=38.31 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i 211 (524)
+..+++||||||.+... ....|....+.-|..-+++|+++-...+...|
T Consensus 101 ~~~KviiI~~ad~l~~~------a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE------AQNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSSEEEEEETGGGS-HH------HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred CCceEEEeehHhhhhHH------HHHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 45789999999998642 22455556666665556777777655554444
No 408
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.67 E-value=2.1 Score=45.40 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
..++.||.|+|||....
T Consensus 41 a~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 41 AYLFSGIRGTGKTTLAR 57 (451)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 47899999999997654
No 409
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.64 E-value=2.3 Score=43.18 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHH
Q 009843 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 39 ~r~~Q~~~i~~~l----~g~---d~lv~apTGsGKTl~~~ 71 (524)
+.|||..++..+. +|+ -.++.+|.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5678888777654 332 46899999999996543
No 410
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.56 E-value=1.4 Score=45.63 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.6
Q ss_pred CccEEEEecccccccc
Q 009843 158 LLNLVAIDEAHCISSW 173 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~ 173 (524)
.+++++||.++.+..+
T Consensus 175 ~~dlllIDDiq~l~gk 190 (408)
T COG0593 175 SLDLLLIDDIQFLAGK 190 (408)
T ss_pred ccCeeeechHhHhcCC
Confidence 4889999999998754
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.52 E-value=12 Score=39.29 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=30.5
Q ss_pred CEEEEcCCCChHHHHHH-HHHh-c--CCCeEEEeC--cHHHHHHHHHHHH-HHcCCcee
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPAL-A--KPGIVLVVS--PLIALMENQVIGL-KEKGIAGE 106 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l-~--~~~~~lvl~--P~~~L~~q~~~~l-~~~gi~~~ 106 (524)
-+++++++|+|||.+.. +... . .+.+++++. +.+.-+.+|...+ ...+++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~ 159 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF 159 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE
Confidence 36889999999996643 3322 2 345555554 4555555555554 33555543
No 412
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.50 E-value=0.86 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=16.2
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA 74 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (524)
.++++.+|+|.|||.-+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 369999999999996554433
No 413
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.48 E-value=14 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (524)
+++.+|+|+|||....
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999997643
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=89.47 E-value=5.3 Score=42.03 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=29.1
Q ss_pred EEEEcCCCChHHHHHH-HHH-hc-C-CCeEEEeC--cHHHHHHHHHHHH-HHcCCce
Q 009843 56 CFCLMPTGGGKSMCYQ-IPA-LA-K-PGIVLVVS--PLIALMENQVIGL-KEKGIAG 105 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp~-l~-~-~~~~lvl~--P~~~L~~q~~~~l-~~~gi~~ 105 (524)
+++++|+|+|||.+.. +.. +. . +.+++++. +.++-+.+|...+ ...|++.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v 159 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV 159 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE
Confidence 6788999999996543 322 22 2 44555554 5666555555443 3355553
No 415
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.46 E-value=1.3 Score=47.85 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=53.1
Q ss_pred EEEEeCccccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-ccCCCccE
Q 009843 261 AIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (524)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~-----a~~~G-iD~p~v~~ 329 (524)
+||.++||+-|.++++.+... ++.+..++||++...+...+ +.| .+|||||+ .+.+| +|...+++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998877643 57789999999877665444 446 99999998 34555 77788888
Q ss_pred EE
Q 009843 330 VC 331 (524)
Q Consensus 330 VI 331 (524)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 77
No 416
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.46 E-value=0.66 Score=45.40 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEe
Q 009843 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (524)
Q Consensus 45 ~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl 84 (524)
+++..+..|+.+++.+|+|+|||.....-+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3445566789999999999999976543332334444444
No 417
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.42 E-value=0.6 Score=52.79 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
..+++-|++|+.. ....++|.|..|||||.+.. +.-+. .+..+++++-|+..+....+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999975 34579999999999996543 22222 2457999999988888877777653
No 418
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.42 E-value=1.9 Score=43.81 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=32.3
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
.--++|+|-|+.+-+.+.-.-+.+.++..+... +.-.+.+|++..+..
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQ 162 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHH
Confidence 345799999999988775544444455444333 334788899988765
No 419
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.37 E-value=3.5 Score=37.89 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=13.7
Q ss_pred cCCccEEEEeccccccc
Q 009843 156 RGLLNLVAIDEAHCISS 172 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~ 172 (524)
.+...++||||+|.+..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 34578999999999864
No 420
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.32 E-value=1.9 Score=43.39 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=54.2
Q ss_pred HHHHHHc------CCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHH
Q 009843 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (524)
Q Consensus 46 ~i~~~l~------g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (524)
.+..++. |+-+.+.+|+|+|||...+.. +...++.+++|.+--++-.+ .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~----------- 107 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL----------- 107 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH-----------
Confidence 4556665 345789999999999543321 23447889999876666543 344444321
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
-++++..|... ...+..+......+.+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 --------------DNLLISQPDTG--EQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --------------HHheecCCCCH--HHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 11223333211 1122333334445568999999876653
No 421
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=89.25 E-value=0.35 Score=44.10 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=48.3
Q ss_pred EEEcCCCChHHHHHHHHH--hcCC--CeEEEeCcHHHHHHHHHHHHH----HcCCceeEeccCCCHHHHHHHHHHhhcCC
Q 009843 57 FCLMPTGGGKSMCYQIPA--LAKP--GIVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (524)
Q Consensus 57 lv~apTGsGKTl~~~lp~--l~~~--~~~lvl~P~~~L~~q~~~~l~----~~gi~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (524)
++.|+-|-|||.+--+.+ +... ..++|.+|..+=++...+.+. .++.+. ...........+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~-- 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-------EKKKRIGQIIKLRF-- 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-------cccccccccccccc--
Confidence 467899999997644332 2222 368888998776555444332 222221 00000000000111
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 129 ~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
....+-|.+|+.+... ....+++|||||=.+-- ..|..+ ....+.++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~-----------~~~~DlliVDEAAaIp~---------p~L~~l---l~~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-----------KPQADLLIVDEAAAIPL---------PLLKQL---LRRFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT---------------SCEEECTGGGS-H---------HHHHHH---HCCSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhC-----------cCCCCEEEEechhcCCH---------HHHHHH---HhhCCEEEEEeecc
Confidence 1245666666643321 11258999999988642 233333 44567888888864
No 422
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=89.23 E-value=7.5 Score=42.87 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=35.2
Q ss_pred HHcCCCEEEEcCCCChHHHHHHH--HH-hc-CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCYQI--PA-LA-KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~~l--p~-l~-~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
..+.+-.++.+|=|-|||.+-.+ .+ +. .+..++|..|...-+++..+.++.
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 34556778899999999965331 11 22 366899999988777776666554
No 423
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.15 E-value=1.9 Score=43.32 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHHHc-C-----CCEEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHH
Q 009843 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (524)
Q Consensus 46 ~i~~~l~-g-----~d~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (524)
.+..++. | +-+.+.+|+|+|||...+ ..+...++.++++..--++-.. .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~----------- 107 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI----------- 107 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-----------
Confidence 3455554 3 457899999999995432 2223457788888765555432 344444321
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
-++++..|... ...+..+......+.+++||||-+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 --------------DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12333333211 1122333334444568999999987664
No 424
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.05 E-value=0.74 Score=55.11 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHH---HHhcC---CCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK---PGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~l---p~l~~---~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
++++-|.+||.. .+++++|.|..|||||.+..- -.+.. ...+++|+=|+..+....+++.+
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 478999999984 688999999999999977532 22222 34589999999888765555544
No 425
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.91 E-value=6.5 Score=37.99 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMEN 93 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q 93 (524)
++++..+|+|+|||+.+ -++.. ....++.+..-+|+-.
T Consensus 152 knVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGe 190 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHH
Confidence 79999999999999753 33333 3445555555566554
No 426
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.90 E-value=0.85 Score=45.95 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHH-HcCCCEEEEcCCCChHHHHHH--HHHh---cCCCeEEEeCcHHHH
Q 009843 38 QFRDKQLDAIQAV-LSGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIAL 90 (524)
Q Consensus 38 ~~r~~Q~~~i~~~-l~g~d~lv~apTGsGKTl~~~--lp~l---~~~~~~lvl~P~~~L 90 (524)
.+.+.|.+.+..+ ..++++++.++||+|||.... +..+ ....+++++-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3677888888764 456789999999999994321 1111 123456665555554
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.87 E-value=9.1 Score=43.03 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=31.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHh
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
..++|+||=+=.... -......+..+.... |...++.++||...+..+++...+
T Consensus 263 ~~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 263 DKHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 357888887765321 122334444444322 344578889998777777666555
No 428
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.83 E-value=1.4 Score=44.05 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHH--HHHHhcC---CCeEEEeCcHHHH
Q 009843 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l-~g~d~lv~apTGsGKTl~~--~lp~l~~---~~~~lvl~P~~~L 90 (524)
.+.+.|.+.+..+. .++++++.+|||+|||... ++..+.. ..+++++=...+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 46667777766655 4568999999999999542 2222221 4566766666555
No 429
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.78 E-value=3.9 Score=43.43 Aligned_cols=56 Identities=21% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHHHH-HH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009843 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (524)
Q Consensus 46 ~i~~~l~-----g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (524)
-++.++. |.-+++.+++|+|||...+ +. ....++.+++++.--+ ..|...+..++|
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg 145 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLG 145 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcC
Confidence 3455554 3457889999999995433 21 1233567888886433 345555555554
No 430
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.68 E-value=1 Score=45.23 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=41.9
Q ss_pred HcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCChHHHH-HHHHHh-cCCCeEEEeCcHHHH
Q 009843 33 HFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPAL-AKPGIVLVVSPLIAL 90 (524)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l~g~-d~lv~apTGsGKTl~-~~lp~l-~~~~~~lvl~P~~~L 90 (524)
...|..+++-|...+..+..++ ++++.+.||||||.. ..+.+. ....++|.+=-+.+|
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 3455689999999888877765 999999999999943 222222 235578887777666
No 431
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.64 E-value=3.7 Score=47.33 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.+.++.+|+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999654
No 432
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=88.55 E-value=0.85 Score=48.66 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=26.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCC--EEEEeccCCh
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP--ILALTATAAP 205 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~--ii~lSAT~~~ 205 (524)
.++.+++||||+|+++.-+ ...+.+.+...| ++++=||-.+
T Consensus 117 ~~ryKVyiIDEvHMLS~~a---------fNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQA---------FNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred cccceEEEEecHHhhhHHH---------HHHHhcccccCccCeEEEEecCCc
Confidence 5568999999999998632 334445554333 6666666543
No 433
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=88.54 E-value=1.7 Score=43.66 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=26.6
Q ss_pred HHHHHcC-----CCEEEEcCCCChHHH-HHHHHHhc--------CCCeEEEeCcHH
Q 009843 47 IQAVLSG-----RDCFCLMPTGGGKSM-CYQIPALA--------KPGIVLVVSPLI 88 (524)
Q Consensus 47 i~~~l~g-----~d~lv~apTGsGKTl-~~~lp~l~--------~~~~~lvl~P~~ 88 (524)
+..++.| .-+.+.+|+|+|||. |.++..-. .++.++||.---
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 4555554 446799999999994 44433211 256888887443
No 434
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.53 E-value=0.68 Score=47.10 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHcCCCEEEEcCCCChHHHHH--HHHHhcCCCeEEEeCcHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~--~lp~l~~~~~~lvl~P~~~L 90 (524)
+..++++++.+|||||||... ++..+....+++.+=.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 445789999999999999532 12222234566666666555
No 435
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=88.53 E-value=2.9 Score=43.04 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~ 69 (524)
.|+..++.+|.|+|||..
T Consensus 168 kGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cCceEEEeCCCCCChhHH
Confidence 688999999999999954
No 436
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.49 E-value=0.31 Score=53.88 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=42.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (524)
.++++.||||+|||..+.+|.+.. ++.+||+=|--++..-.....++ .|-++..++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999998765 77888888999987655444433 455554443
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.48 E-value=0.55 Score=49.39 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHcCCC--EEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g~d--~lv~apTGsGKTl~ 69 (524)
+.+.|.+.+..++.... ++|.+|||||||.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 47888888888776543 67889999999965
No 438
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.46 E-value=3.8 Score=47.18 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.+|+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999754
No 439
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=88.45 E-value=1.6 Score=45.13 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|+.+++++|+|+|||....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCEEEEECCCCCChhHHHH
Confidence 57889999999999996544
No 440
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.44 E-value=1.6 Score=47.13 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccC
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~ 203 (524)
+..+++||||||.+..- ....|....+..|+.-.++|++|-
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEECC
Confidence 45789999999998642 123344444444433344454443
No 441
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.42 E-value=1.4 Score=41.67 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.0
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
-++++.+|+|+|||.+.+.
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 3789999999999987643
No 442
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.39 E-value=2.5 Score=45.69 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=55.3
Q ss_pred CCCEEEEcCCCChHHHHH-HH--HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCC
Q 009843 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~-~l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (524)
|.-+++.+|+|+|||.-. ++ -++..+..+++++-.. -..+..+.+..+|+...- .+..+.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~g~~~~~---------------~~~~g~- 335 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSWGIDLEK---------------MEEKGL- 335 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHcCCChHH---------------HhhcCC-
Confidence 456788999999999532 22 2345577788886433 345556666666643210 011111
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
..+....|....-..++..+.........+++|||=.--+.
T Consensus 336 -l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 336 -LKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred -ceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 22332233322222344445444444567899999987664
No 443
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=88.32 E-value=2.7 Score=38.24 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=35.9
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
.+....+.++++|+||+-...++|. -+. ..+..+.+..|.--=+.+|+.-.|..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gl--i~~-~~v~~lL~~rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGY--LDV-EEVVEALQERPGHQHVIITGRGCPQD 143 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCC--cCH-HHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 4444456799999999998888773 222 34445556666655677888766553
No 444
>PRK07773 replicative DNA helicase; Validated
Probab=88.22 E-value=1.9 Score=49.90 Aligned_cols=145 Identities=19% Similarity=0.149 Sum_probs=65.1
Q ss_pred CEEEEcCCCChHHHHHHHHH----hcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-ccCCCHHHHHHHHHHhhcC
Q 009843 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~----l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~l~~~ 127 (524)
=+++.|++|+|||.-.+--+ ...+..+++++-- .=..|.+.++.. .++....+ .+.....+...+......-
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlE-ms~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l 297 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLE-MSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEI 297 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36778899999996433221 2224566666521 112233334333 23322211 1122222222222111111
Q ss_pred CCcccEEE-eCcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHH-HH----HHHHHHHHhCCCCCEEEEe
Q 009843 128 KPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPILALT 200 (524)
Q Consensus 128 ~~~~~ll~-~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l~~~~~~~~ii~lS 200 (524)
. ...+.+ -+|. +.-..+...+........+++||||=.+.+..-+. +-|. .+ +.|+.+.+.+ ++|++++|
T Consensus 298 ~-~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~vpvi~ls 374 (886)
T PRK07773 298 S-EAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKEL-EVPVVALS 374 (886)
T ss_pred h-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCcEEEec
Confidence 0 122222 1222 21223444444444445699999999998864211 1121 11 2233333332 88999888
Q ss_pred ccC
Q 009843 201 ATA 203 (524)
Q Consensus 201 AT~ 203 (524)
-.-
T Consensus 375 QLn 377 (886)
T PRK07773 375 QLS 377 (886)
T ss_pred ccC
Confidence 664
No 445
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.17 E-value=2.2 Score=45.38 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=67.9
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-ccCCCc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDV 327 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~-----a~~~G-iD~p~v 327 (524)
+..+||-++||+-|.++.+.+.+. ++.+.+++||.+...+..-++ ..++|+|||+ .+.+| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 556999999999999999888765 456889999998665444332 3689999997 45666 688889
Q ss_pred cEEE--------EeCCCCCHHHHHHHHhhcCC
Q 009843 328 RLVC--------HFNIPKSMEAFYQESGRAGR 351 (524)
Q Consensus 328 ~~VI--------~~~~p~s~~~y~Q~~GRagR 351 (524)
+++| .+++-..++..++.++|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 9988 44455567777888777766
No 446
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.15 E-value=2.2 Score=43.23 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999997654
No 447
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.96 E-value=2.7 Score=46.41 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=28.4
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
.+..+++||||+|.++.. ....|..+.+..|..-+++|++|-...+
T Consensus 119 ~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred cCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 345789999999998752 2244545555555544666766644433
No 448
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.94 E-value=1.2 Score=46.93 Aligned_cols=56 Identities=27% Similarity=0.304 Sum_probs=47.5
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
...-++|+++||+-+.++.++|... ++.+..+.|||....++++++. ..+|+|||+
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3334899999999999999998753 8999999999998877777765 778999997
No 449
>CHL00195 ycf46 Ycf46; Provisional
Probab=87.91 E-value=2.8 Score=44.86 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||+..-
T Consensus 260 kGILL~GPpGTGKTllAk 277 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999997653
No 450
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.85 E-value=0.97 Score=43.01 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=11.9
Q ss_pred EEEEcCCCChHHHH
Q 009843 56 CFCLMPTGGGKSMC 69 (524)
Q Consensus 56 ~lv~apTGsGKTl~ 69 (524)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999964
No 451
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.80 E-value=4.6 Score=40.86 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHH
Q 009843 40 RDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 40 r~~Q~~~i~~~l~--g---~d~lv~apTGsGKTl~~~ 71 (524)
.|||...+..+.. + +-.++.+|.|.|||..+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 5788888887763 2 247899999999996543
No 452
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.64 E-value=0.78 Score=46.52 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=24.6
Q ss_pred HHcCCCEEEEcCCCChHHHH--HHHHHhcCCCeEEEeCcHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIA 89 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~--~~lp~l~~~~~~lvl~P~~~ 89 (524)
+..++++++.+|||+|||.. +++..+....+++++=-+.+
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~E 198 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDARE 198 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCc
Confidence 34578999999999999953 22333333456555433333
No 453
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.64 E-value=3.4 Score=47.41 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.++++.+|+|+|||....
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997653
No 454
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=3.6 Score=44.32 Aligned_cols=54 Identities=11% Similarity=-0.076 Sum_probs=30.0
Q ss_pred cccCCCCChhHHHHHHHHHHcC-CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg-~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
...+++++-.+.....|.+... +.+|..++.-.+ .--+.+++.+|+|+|||..+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHH
Confidence 3455555555554444444332 233333332221 12367999999999999754
No 455
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.53 E-value=3.2 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCCEEEEcCCCChHHHHHH-HHH--hcCCCeEEEeCcH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~--l~~~~~~lvl~P~ 87 (524)
|.-+.+.+|+|+|||...+ +.. ...+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4557899999999996543 221 2345567777653
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.50 E-value=1.4 Score=40.63 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHH
Q 009843 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l-~g~d~lv~apTGsGKTl~ 69 (524)
..+.+.|.+.+.... .|..+++.+|||+|||..
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 357788888887755 567889999999999964
No 457
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=87.43 E-value=0.83 Score=50.15 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHcCCC----------EEEEcCCCChH--HHHHH-HHH-hcCCCeEEEeCcHHHHHHHHHHHHHHcC-
Q 009843 38 QFRDKQLDAIQAVLSGRD----------CFCLMPTGGGK--SMCYQ-IPA-LAKPGIVLVVSPLIALMENQVIGLKEKG- 102 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d----------~lv~apTGsGK--Tl~~~-lp~-l~~~~~~lvl~P~~~L~~q~~~~l~~~g- 102 (524)
.+...|.|++..+.+.++ .++--..|.|| |.+.+ +-- |.-.+++|+++-...|--|.-+.|+..|
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 577899999977664322 23333445555 43322 111 2336789999999899888777787754
Q ss_pred --CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccc-c-----Chh---hHHHHHhhhccCCccEEEEecccccc
Q 009843 103 --IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-A-----TPG---FMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 103 --i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v-~-----t~~---~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
|.+..++.-.-... . .-..+..+--++++|.-.+ + +.. .+..|........=.+||+||||...
T Consensus 344 ~~I~V~alnK~KYakI----s-s~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKI----S-SKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred CCccceehhhcccccc----c-ccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 44444332111100 0 0111222234667766422 2 111 23333333333334689999999975
Q ss_pred cc----CCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 172 SW----GHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 172 ~~----g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
.. |..--..=+....+.+.+|+..++.-|||-.
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA 455 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC
Confidence 41 0000001144567888999999999999953
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.35 E-value=3.3 Score=40.14 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~ 69 (524)
+-.|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999954
No 459
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.31 E-value=2.4 Score=42.54 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
+..++++||||+.+.. ..-..+....+..|..-.++|++..+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 4588999999999864 11233444444444444555555433
No 460
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=2.2 Score=43.62 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
++++..+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999875
No 461
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=87.13 E-value=2.2 Score=39.36 Aligned_cols=34 Identities=29% Similarity=0.130 Sum_probs=22.0
Q ss_pred CEEEEcCCCChHHHHHHHHH---hcCCCeEEEeCcHH
Q 009843 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~ 88 (524)
=.++.+|.+||||.--+--+ ...+.++++..|.+
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 35789999999997432211 12366777777753
No 462
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.11 E-value=3.6 Score=38.09 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cccc-ccCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~~~G-iD~p~ 326 (524)
.+.++||.++++.-+.+.++.+... ++.+..++|+.+..++.... .+..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999998887776554 67888999998876544322 267899999952 2222 45566
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
++++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 77766
No 463
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.00 E-value=6.6 Score=45.17 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.2
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCCChHHHHH
Q 009843 42 KQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 42 ~Q~~~i~~~l~-------g-----~---d~lv~apTGsGKTl~~ 70 (524)
+|.+|+..+.+ | + .+++.+|||+|||...
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 68888776542 1 1 2789999999999765
No 464
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=4.4 Score=41.32 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
+.++..+|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999854
No 465
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.83 E-value=0.9 Score=40.38 Aligned_cols=38 Identities=26% Similarity=0.525 Sum_probs=25.1
Q ss_pred cccChhhHHHHHhhhccCC---ccEEEEecccc--------ccccCCCC
Q 009843 140 LTATPGFMSKLKKIHSRGL---LNLVAIDEAHC--------ISSWGHDF 177 (524)
Q Consensus 140 ~v~t~~~~~~l~~~~~~~~---l~~iViDEaH~--------i~~~g~~f 177 (524)
.++++.+...+......+. +.++++|+++. +..-||+.
T Consensus 77 tLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~I 125 (187)
T COG4185 77 TLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDI 125 (187)
T ss_pred eeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCC
Confidence 5666777777766555443 67899999954 34456664
No 466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=1.9 Score=47.16 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.0
Q ss_pred CCCEEEEcCCCChHHH
Q 009843 53 GRDCFCLMPTGGGKSM 68 (524)
Q Consensus 53 g~d~lv~apTGsGKTl 68 (524)
|--+++++|+|.|||-
T Consensus 350 GpILcLVGPPGVGKTS 365 (782)
T COG0466 350 GPILCLVGPPGVGKTS 365 (782)
T ss_pred CcEEEEECCCCCCchh
Confidence 4457788999999994
No 467
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=86.51 E-value=1.7 Score=48.54 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=21.6
Q ss_pred HHHHHHHHHHc-------C--------CCEEEEcCCCChHHHH
Q 009843 42 KQLDAIQAVLS-------G--------RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 42 ~Q~~~i~~~l~-------g--------~d~lv~apTGsGKTl~ 69 (524)
.|.+|+.++.+ | ..+++.+|||.|||-.
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 68888887653 1 2578899999999954
No 468
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.51 E-value=20 Score=37.05 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=28.9
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~ 214 (524)
+..++|+||=+-..- .-......+..+..... ..-++.+|||.......++...
T Consensus 284 ~~~D~VLIDTAGr~~----~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 284 NCVDHILIDTVGRNY----LAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred CCCCEEEEECCCCCc----cCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 347889998886532 11233444555544432 2235567777666554444443
No 469
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.46 E-value=7 Score=36.63 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=23.6
Q ss_pred cEEEEeccccccccCC-CCHHHHHHHHHHHHhCC--CCCEEEEeccC
Q 009843 160 NLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLP--DVPILALTATA 203 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~-~fr~~~~~l~~l~~~~~--~~~ii~lSAT~ 203 (524)
-+|||||+|.+. .+. +.......+..+..... ....+.++++.
T Consensus 120 ~iiviDe~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLA-IASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGG-BCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHh-hcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999998 322 12333345555555522 12244466665
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.41 E-value=1.6 Score=42.69 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~ 69 (524)
+.+.|.+.+..++.. .-+++.+|||+|||..
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 467788888776643 3478999999999964
No 471
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.34 E-value=7.5 Score=34.84 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=34.3
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChh
Q 009843 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (524)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (524)
.+....+..+++|+||+=....+|.--. ..+..+.+..|...=+.+|+--.|.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~---~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDV---EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCH---HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 4444466799999999998877773211 3455555666655566666665444
No 472
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=6.4 Score=42.53 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=35.1
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
+-..|.+++-.+++..-|....-.+--+|-+-+++--- .-..+++.+|+|+||||.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 34556667777777766666444333444444433211 1346899999999999854
No 473
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=86.19 E-value=2.3 Score=43.23 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=22.7
Q ss_pred CCEEEEcCCCChHH-HHHHHHHhc--------CCCeEEEeCcHH
Q 009843 54 RDCFCLMPTGGGKS-MCYQIPALA--------KPGIVLVVSPLI 88 (524)
Q Consensus 54 ~d~lv~apTGsGKT-l~~~lp~l~--------~~~~~lvl~P~~ 88 (524)
.-+.+.+|+|+||| +|.++..-. .++.++||.---
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 34679999999999 444443211 136888887643
No 474
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=86.05 E-value=12 Score=39.72 Aligned_cols=123 Identities=22% Similarity=0.182 Sum_probs=87.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~ 156 (524)
++.+++|.+=|+-++++..+-|...|+++.++++....-++.++..+++.|. ++++++- +.|.+-.+.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGI----------NLLREGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGI----------NLLREGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEee----------hhhhccCCC
Confidence 4789999999999999999999999999999999999999999999999998 6665542 233444555
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (524)
..+++++|=+||.-.= =.+-+..+..+++..+.. +-.+|+..-..+..+.+.|.+
T Consensus 513 PEVsLVAIlDADKeGF-LRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 513 PEVSLVAILDADKEGF-LRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAIDE 567 (663)
T ss_pred cceeEEEEeecCcccc-ccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHHH
Confidence 6688999988987321 011223333333332222 445777777777776665544
No 475
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=86.02 E-value=1.5 Score=52.02 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=50.9
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCce---EEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
+.+++|.++|+.-+.++++.+.+. |+.+ ..+||+++..++....+.+.+|..+|||+|+.
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 567999999999999998887753 4443 36899999999988899999999999999985
No 476
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.80 E-value=5.9 Score=40.16 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=26.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHH
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~ 208 (524)
.+..+++||||||.+..-. ...|-...+.-|+.-+++|+++-...+.
T Consensus 108 ~~~~kvviI~~a~~~~~~a------~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA------ANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred ccCceEEEeehHhhhCHHH------HHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 4557899999999986521 2333334444333335566665433433
No 477
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=85.79 E-value=5.2 Score=44.51 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
+.+++.+|+|+|||.....
T Consensus 186 ~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 478
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=85.75 E-value=5 Score=41.77 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=25.4
Q ss_pred EEEEcCCCChHHHHHHHHH----hc--CCCeEEEeCcHHHH
Q 009843 56 CFCLMPTGGGKSMCYQIPA----LA--KPGIVLVVSPLIAL 90 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~----l~--~~~~~lvl~P~~~L 90 (524)
.++.++.|||||.+..+-+ +. .+..++++-|+..-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~s 44 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNS 44 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhH
Confidence 5788999999997655333 33 56778888887763
No 479
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=85.68 E-value=9.4 Score=38.07 Aligned_cols=113 Identities=21% Similarity=0.208 Sum_probs=57.2
Q ss_pred HHHHHHHHHH-cCCCEEEEcCCCChHHHHHH--HHHhc-----------CCCeEEEeCcHHHHHHHHHHHHH----HcCC
Q 009843 42 KQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ--IPALA-----------KPGIVLVVSPLIALMENQVIGLK----EKGI 103 (524)
Q Consensus 42 ~Q~~~i~~~l-~g~d~lv~apTGsGKTl~~~--lp~l~-----------~~~~~lvl~P~~~L~~q~~~~l~----~~gi 103 (524)
.|-+.|+... +|..+++.++.|.|||+..+ -.++. ..|.+++|+--.+ -++.+++++ .+|+
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~-re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELY-REDILERLEPVRARMGL 155 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccC-hHHHHHHHHHHHHHcCC
Confidence 3445554433 45556788999999996543 22221 2678888863211 112233333 3443
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccc-ccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~-v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
.. .+...+.. .++--.+++. +..|.+..++.....+.+.+++|||=.=.+..
T Consensus 156 sP---------advrn~dl--------td~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~ 208 (402)
T COG3598 156 SP---------ADVRNMDL--------TDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYE 208 (402)
T ss_pred Ch---------Hhhhheec--------cccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcC
Confidence 21 11111100 0000023332 33456666666666666789999998766543
No 480
>PRK09183 transposase/IS protein; Provisional
Probab=85.62 E-value=1.3 Score=43.30 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMEN 93 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q 93 (524)
+..+.++++.+|+|+|||.....- +...+..++++ +..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHH
Confidence 446788999999999999544322 22334455544 44455443
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.54 E-value=7.5 Score=44.72 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=21.3
Q ss_pred HHHHHHHHHH----cC--CCEEEEcCCCChHHHHH
Q 009843 42 KQLDAIQAVL----SG--RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 42 ~Q~~~i~~~l----~g--~d~lv~apTGsGKTl~~ 70 (524)
.|.+.|..+. .+ .++++++|.|+|||...
T Consensus 191 Gr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 3666666654 22 58999999999999654
No 482
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.45 E-value=2.7 Score=41.56 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=13.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
+.+++++|||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999654
No 483
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=85.41 E-value=1.2 Score=50.25 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (524)
-.|+|.|.++|.+-....++.+++|+|+|||-... +-.+. ...+++|++....-++|-.+.+.+..+..
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~ 810 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDE 810 (1320)
T ss_pred hccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccch
Confidence 35688999999887777899999999999995432 22332 26799999999888888777766654433
No 484
>PF05729 NACHT: NACHT domain
Probab=85.41 E-value=9.9 Score=33.42 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=23.3
Q ss_pred ccEEEEeccccccccCCC--CHHHHHHHHHHHHh--CCCCCEEEEec
Q 009843 159 LNLVAIDEAHCISSWGHD--FRPSYRKLSSLRNY--LPDVPILALTA 201 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~--fr~~~~~l~~l~~~--~~~~~ii~lSA 201 (524)
--++|+|-.|.+..-... -.+....+..+... .++++++..|.
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r 128 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSR 128 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEc
Confidence 345999999998763211 11222335555554 45666554443
No 485
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.35 E-value=2.3 Score=45.38 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=54.4
Q ss_pred CccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
++.+||.++++.-+++....|...|+.+..++++.+..++..++.....|+.+|+++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 346899999999999999999999999999999999999999999999999999999973
No 486
>PRK10436 hypothetical protein; Provisional
Probab=85.04 E-value=1.8 Score=46.01 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~ 69 (524)
+.+.|.+.+..++.. .-+++.+|||||||.+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 556777777776543 3578999999999965
No 487
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=15 Score=40.54 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=34.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~ 69 (524)
.+|++++--.++...|.+..-++.-.|- .-+--.+.....+++.+|+|+|||+.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~-if~~~plr~~~giLLyGppGcGKT~l 717 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQ-IFANCPLRLRTGILLYGPPGCGKTLL 717 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchH-HHhhCCcccccceEEECCCCCcHHHH
Confidence 6777777777888888876655433331 11111122345799999999999964
No 488
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.93 E-value=3.3 Score=45.93 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-cccCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRK 325 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~-----a~~~-GiD~p 325 (524)
....+||.++|+.-+.++++.+... ++.+..+||+.+...+...+ ....+|||+|+ .+.. .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457899999999999998877642 78899999998765543332 34678999995 2233 36777
Q ss_pred CccEEE
Q 009843 326 DVRLVC 331 (524)
Q Consensus 326 ~v~~VI 331 (524)
++++||
T Consensus 149 ~l~~lV 154 (629)
T PRK11634 149 KLSGLV 154 (629)
T ss_pred hceEEE
Confidence 888877
No 489
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.56 E-value=1 Score=44.19 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=25.2
Q ss_pred HcCCCEEEEcCCCChHHHHH--HHHHhcCC-CeEEEeCcHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~--~lp~l~~~-~~~lvl~P~~~L 90 (524)
..+..+++.+|||||||... ++..+... .+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34678999999999999542 23333344 566666554443
No 490
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=1.1 Score=46.25 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=20.2
Q ss_pred CCEEEEcCCCChHHHHHHHHH-hcCCCeEE
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA-LAKPGIVL 82 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~-l~~~~~~l 82 (524)
-++|+.+|||+|||+..+--| +..-+.+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaI 256 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAI 256 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence 469999999999998776433 33334333
No 491
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.04 E-value=7.2 Score=42.45 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=32.3
Q ss_pred cccCCCCChhHHHHHHHHHHcCC-CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGH-AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~-~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
...|.++.-.++....|.+.-.| ..|..+|.--. .-.+.+++.+|+|+|||+.+
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa---kiPkGvlLvGpPGTGKTLLA 200 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA---KIPKGVLLVGPPGTGKTLLA 200 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc---ccccceeEecCCCCCcHHHH
Confidence 34445555555555555554333 34555554332 22367999999999999865
No 492
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.00 E-value=1.7 Score=46.50 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHcCC-C-EEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQAVLSGR-D-CFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g~-d-~lv~apTGsGKTl~ 69 (524)
+.+.|.+.+..++... . +++.+|||+|||..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4677888888776543 3 68999999999965
No 493
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=83.58 E-value=15 Score=35.24 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHh---------------cCCCeEEEeC
Q 009843 56 CFCLMPTGGGKSMCYQIPAL---------------AKPGIVLVVS 85 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l---------------~~~~~~lvl~ 85 (524)
.++.+|.|+|||...+--++ ..+++++|++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 58899999999965432222 1356788887
No 494
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=83.23 E-value=3.4 Score=45.59 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=53.6
Q ss_pred ccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
+.+||.++++.-+++..+.|+..|+.+..+|++++..++..+.+....|.+++++.|+-
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 45788899999998888999999999999999999999999999999999999998853
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.21 E-value=17 Score=37.30 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCChHHHH
Q 009843 53 GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (524)
.+.+.+.+|.|.|||+.
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 46799999999999964
No 496
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.08 E-value=1.8 Score=48.91 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.6
Q ss_pred EEEEcCCCChHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (524)
+++.+|||+|||..+.
T Consensus 487 ~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 487 FLFTGPTGVGKTELAK 502 (731)
T ss_pred EEEECCCCccHHHHHH
Confidence 6899999999997654
No 497
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=6.1 Score=41.12 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~ 87 (524)
+.+++.+|.|+|||+..-.-|.+......-|+|.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhcceEeeccHH
Confidence 5678999999999986544444444444555553
No 498
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.98 E-value=8.2 Score=43.33 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=27.1
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccC
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATA 203 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~ 203 (524)
.=++|+|.-|.+.+---+ ..+..+.+..| +...++.|=+-
T Consensus 130 pl~LVlDDyHli~~~~l~-----~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 130 PLYLVLDDYHLISDPALH-----EALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred ceEEEeccccccCcccHH-----HHHHHHHHhCCCCeEEEEEeccC
Confidence 347999999999873321 55677777777 55566666553
No 499
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.89 E-value=2.3 Score=46.56 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~ 69 (524)
+.+.|.+.+..++.. .-+++.+|||||||.+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 457777777776653 3478999999999965
No 500
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.82 E-value=9 Score=41.73 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=35.7
Q ss_pred ccccCCCCChhHHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 13 QTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~f--g~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
+...|.+++-.+++...|++.- ...++-.+.+-.+ ---+.+++.+|+|+|||+++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 3456778887888888888543 2222222222221 12367999999999999876
Done!