Query 009843
Match_columns 524
No_of_seqs 395 out of 3197
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 14:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 3.5E-74 1.2E-78 623.2 41.8 407 19-457 25-435 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-73 6.2E-78 611.2 42.5 406 15-457 2-407 (523)
3 2db3_A ATP-dependent RNA helic 100.0 3.1E-51 1.1E-55 430.1 34.6 343 13-374 54-417 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 2.2E-50 7.5E-55 438.9 32.9 345 21-378 27-411 (579)
5 2i4i_A ATP-dependent RNA helic 100.0 1.4E-49 4.6E-54 415.0 35.6 348 14-378 14-396 (417)
6 3i5x_A ATP-dependent RNA helic 100.0 6.3E-50 2.2E-54 434.2 31.9 344 22-378 79-462 (563)
7 2j0s_A ATP-dependent RNA helic 100.0 1.8E-48 6E-53 405.9 38.5 348 12-379 34-397 (410)
8 1s2m_A Putative ATP-dependent 100.0 3.2E-48 1.1E-52 402.5 35.7 346 14-379 20-379 (400)
9 1xti_A Probable ATP-dependent 100.0 1.5E-47 5.1E-52 395.9 38.8 344 15-376 8-369 (391)
10 3eiq_A Eukaryotic initiation f 100.0 1.6E-48 5.4E-53 406.3 29.2 349 15-381 40-403 (414)
11 3pey_A ATP-dependent RNA helic 100.0 3E-47 1E-51 393.6 36.2 340 14-376 4-368 (395)
12 3fht_A ATP-dependent RNA helic 100.0 2E-47 6.9E-52 397.5 34.3 345 12-379 22-394 (412)
13 1hv8_A Putative ATP-dependent 100.0 8.9E-47 3E-51 386.1 37.6 341 16-379 7-359 (367)
14 2z0m_A 337AA long hypothetical 100.0 6E-47 2.1E-51 383.0 31.9 325 23-375 2-332 (337)
15 1fuu_A Yeast initiation factor 100.0 1.6E-48 5.6E-53 403.3 19.6 344 13-376 19-377 (394)
16 3oiy_A Reverse gyrase helicase 100.0 5.5E-47 1.9E-51 395.5 27.6 329 23-376 7-374 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 9.2E-47 3.1E-51 401.3 14.5 340 13-375 90-457 (479)
18 4a4z_A Antiviral helicase SKI2 100.0 5.8E-45 2E-49 414.7 29.7 383 21-455 23-576 (997)
19 4gl2_A Interferon-induced heli 100.0 2.7E-46 9.4E-51 415.8 15.3 364 38-410 7-579 (699)
20 2ykg_A Probable ATP-dependent 100.0 4.9E-44 1.7E-48 397.4 25.1 329 28-373 4-524 (696)
21 3fho_A ATP-dependent RNA helic 100.0 2.9E-45 1E-49 392.1 14.0 343 17-378 121-484 (508)
22 2va8_A SSO2462, SKI2-type heli 100.0 5.1E-41 1.7E-45 374.0 32.5 326 15-367 8-410 (715)
23 3l9o_A ATP-dependent RNA helic 100.0 7.9E-42 2.7E-46 392.2 25.2 336 17-377 164-610 (1108)
24 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-41 6.3E-46 376.6 26.3 328 17-368 3-391 (702)
25 4ddu_A Reverse gyrase; topoiso 100.0 6.9E-41 2.4E-45 384.3 30.4 291 24-337 65-388 (1104)
26 2zj8_A DNA helicase, putative 100.0 3.1E-41 1.1E-45 375.8 26.6 325 17-368 3-390 (720)
27 4a2p_A RIG-I, retinoic acid in 100.0 8.4E-41 2.9E-45 361.3 26.5 317 36-370 5-513 (556)
28 2xgj_A ATP-dependent RNA helic 100.0 2.8E-40 9.5E-45 376.3 31.5 321 31-377 80-512 (1010)
29 4a2w_A RIG-I, retinoic acid in 100.0 9.7E-41 3.3E-45 379.9 27.5 318 33-369 243-753 (936)
30 1wp9_A ATP-dependent RNA helic 100.0 4.6E-39 1.6E-43 340.3 34.8 314 38-369 9-479 (494)
31 3tbk_A RIG-I helicase domain; 100.0 1.5E-40 5E-45 359.0 23.2 317 38-372 4-514 (555)
32 1gm5_A RECG; helicase, replica 100.0 9.1E-41 3.1E-45 369.4 21.2 316 24-366 355-698 (780)
33 4a2q_A RIG-I, retinoic acid in 100.0 6.1E-39 2.1E-43 360.9 30.3 321 31-370 241-754 (797)
34 1tf5_A Preprotein translocase 100.0 2.8E-38 9.7E-43 343.5 33.8 322 29-367 75-547 (844)
35 2eyq_A TRCF, transcription-rep 100.0 8.2E-38 2.8E-42 360.9 37.6 323 18-366 584-923 (1151)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 6.6E-40 2.2E-44 376.2 17.6 325 24-378 44-467 (1054)
37 4f92_B U5 small nuclear ribonu 100.0 4.4E-37 1.5E-41 364.4 32.6 327 35-377 923-1320(1724)
38 2oca_A DAR protein, ATP-depend 100.0 2.8E-38 9.5E-43 338.6 17.6 301 38-365 113-455 (510)
39 2jlq_A Serine protease subunit 100.0 1.9E-38 6.4E-43 334.2 14.5 284 35-364 1-310 (451)
40 4f92_B U5 small nuclear ribonu 100.0 1.2E-37 4.1E-42 369.3 21.5 337 24-377 64-485 (1724)
41 2wv9_A Flavivirin protease NS2 100.0 2.5E-38 8.5E-43 345.8 10.3 286 38-372 215-543 (673)
42 2fwr_A DNA repair protein RAD2 100.0 4.3E-37 1.5E-41 326.1 18.6 288 38-361 93-448 (472)
43 1yks_A Genome polyprotein [con 100.0 5.5E-38 1.9E-42 329.3 11.3 277 49-374 4-311 (440)
44 2fsf_A Preprotein translocase 100.0 7.6E-36 2.6E-40 323.6 27.5 322 28-367 65-585 (853)
45 2whx_A Serine protease/ntpase/ 100.0 2.1E-37 7.2E-42 336.4 15.0 293 36-374 169-490 (618)
46 1nkt_A Preprotein translocase 100.0 4.4E-35 1.5E-39 317.9 32.8 326 28-367 102-619 (922)
47 2xau_A PRE-mRNA-splicing facto 100.0 9.4E-36 3.2E-40 331.2 22.1 327 14-367 71-445 (773)
48 2z83_A Helicase/nucleoside tri 100.0 9.7E-37 3.3E-41 321.7 11.8 268 48-365 16-313 (459)
49 3o8b_A HCV NS3 protease/helica 100.0 3.4E-36 1.2E-40 324.5 12.8 274 38-368 217-517 (666)
50 2v6i_A RNA helicase; membrane, 100.0 1.4E-35 4.8E-40 310.3 16.9 266 52-363 1-288 (431)
51 3h1t_A Type I site-specific re 100.0 1.9E-34 6.5E-39 314.2 25.3 294 38-354 178-545 (590)
52 3dmq_A RNA polymerase-associat 100.0 1.1E-33 3.6E-38 322.6 24.8 314 38-362 153-610 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 5.2E-33 1.8E-37 303.0 27.0 289 48-380 150-459 (677)
54 3jux_A Protein translocase sub 100.0 5.2E-31 1.8E-35 280.3 32.5 335 27-378 65-607 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 2E-31 6.7E-36 284.7 24.7 299 37-361 36-447 (500)
56 1z3i_X Similar to RAD54-like; 100.0 7E-29 2.4E-33 272.1 34.3 309 38-361 55-522 (644)
57 3mwy_W Chromo domain-containin 100.0 1E-28 3.5E-33 277.3 23.0 315 37-365 235-684 (800)
58 1c4o_A DNA nucleotide excision 100.0 1.3E-27 4.4E-32 262.0 28.9 201 160-374 327-559 (664)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.8E-26 6.1E-31 261.6 24.2 310 23-355 250-695 (1038)
60 3fe2_A Probable ATP-dependent 99.9 2E-26 6.7E-31 222.4 20.8 195 11-224 25-236 (242)
61 2hjv_A ATP-dependent RNA helic 99.9 2.9E-26 9.9E-31 207.4 19.8 152 226-378 4-155 (163)
62 2d7d_A Uvrabc system protein B 99.9 1.3E-25 4.3E-30 246.1 28.5 170 193-374 386-565 (661)
63 3iuy_A Probable ATP-dependent 99.9 1.9E-26 6.4E-31 220.3 17.9 189 16-223 20-226 (228)
64 1q0u_A Bstdead; DEAD protein, 99.9 4.3E-26 1.5E-30 216.5 17.7 197 16-231 5-217 (219)
65 2rb4_A ATP-dependent RNA helic 99.9 8.4E-26 2.9E-30 206.9 18.9 150 229-378 5-160 (175)
66 2pl3_A Probable ATP-dependent 99.9 1.3E-25 4.6E-30 215.5 19.3 192 13-224 23-231 (236)
67 1vec_A ATP-dependent RNA helic 99.9 2E-25 6.9E-30 209.5 18.8 189 15-222 3-204 (206)
68 3eaq_A Heat resistant RNA depe 99.9 1.4E-25 4.6E-30 211.9 17.6 138 242-379 15-152 (212)
69 3ly5_A ATP-dependent RNA helic 99.9 2.2E-25 7.7E-30 217.6 19.8 186 13-215 50-254 (262)
70 1fuk_A Eukaryotic initiation f 99.9 1.2E-25 4E-30 203.9 16.1 147 232-378 4-150 (165)
71 1t5i_A C_terminal domain of A 99.9 2.4E-25 8.1E-30 203.2 17.8 147 231-378 5-152 (172)
72 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.4E-25 8E-30 205.7 17.5 150 228-378 16-166 (185)
73 2oxc_A Probable ATP-dependent 99.9 2.1E-25 7.1E-30 213.5 17.8 193 13-224 22-227 (230)
74 1t6n_A Probable ATP-dependent 99.9 1.3E-24 4.5E-29 206.2 21.5 192 15-223 14-218 (220)
75 3ber_A Probable ATP-dependent 99.9 6.5E-25 2.2E-29 212.6 19.5 194 12-224 40-246 (249)
76 1qde_A EIF4A, translation init 99.9 4.5E-25 1.5E-29 210.0 17.6 193 12-224 11-215 (224)
77 3bor_A Human initiation factor 99.9 3.9E-25 1.3E-29 212.5 17.2 194 13-224 28-233 (237)
78 2p6n_A ATP-dependent RNA helic 99.9 6.5E-25 2.2E-29 203.7 16.7 146 228-375 26-172 (191)
79 2gxq_A Heat resistant RNA depe 99.9 2.1E-24 7.2E-29 202.6 19.9 189 16-223 2-203 (207)
80 3dkp_A Probable ATP-dependent 99.9 4.9E-25 1.7E-29 212.8 15.6 189 20-225 34-240 (245)
81 1wrb_A DJVLGB; RNA helicase, D 99.9 7.5E-25 2.6E-29 212.6 14.6 195 13-224 21-238 (253)
82 2ipc_A Preprotein translocase 99.9 1.9E-22 6.6E-27 218.4 33.0 320 26-367 68-700 (997)
83 3fmo_B ATP-dependent RNA helic 99.9 1.4E-24 4.8E-29 216.0 14.5 190 12-224 89-296 (300)
84 3i32_A Heat resistant RNA depe 99.9 3.9E-24 1.3E-28 211.7 16.6 137 243-379 13-149 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 3.3E-26 1.1E-30 208.6 0.0 147 230-376 2-148 (170)
86 2vl7_A XPD; helicase, unknown 99.9 1.8E-21 6.3E-26 208.9 22.2 76 34-110 4-83 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 9.5E-19 3.2E-23 188.4 24.9 312 38-363 3-529 (551)
88 3b6e_A Interferon-induced heli 99.8 2.1E-18 7.1E-23 162.4 10.6 157 34-202 29-216 (216)
89 2fz4_A DNA repair protein RAD2 99.7 1.3E-17 4.6E-22 159.8 13.1 139 38-207 93-232 (237)
90 4a15_A XPD helicase, ATP-depen 99.7 3E-16 1E-20 170.5 23.8 161 195-363 377-582 (620)
91 1rif_A DAR protein, DNA helica 99.7 1.4E-17 4.6E-22 164.1 12.1 145 38-207 113-266 (282)
92 1z5z_A Helicase of the SNF2/RA 99.7 8.8E-18 3E-22 164.0 9.9 123 243-365 95-224 (271)
93 3llm_A ATP-dependent RNA helic 99.6 4.2E-15 1.4E-19 142.2 13.8 152 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.4 1.2E-06 4E-11 95.0 13.2 78 23-100 134-218 (608)
95 4b3f_X DNA-binding protein smu 98.1 2.3E-05 8E-10 85.5 13.2 72 37-108 188-263 (646)
96 2gk6_A Regulator of nonsense t 97.9 0.00011 3.8E-09 79.7 14.4 70 36-105 178-251 (624)
97 2xzl_A ATP-dependent helicase 97.8 0.00019 6.4E-09 79.9 13.7 70 36-105 358-431 (802)
98 2wjy_A Regulator of nonsense t 97.7 0.00023 7.9E-09 79.1 13.3 69 37-105 355-427 (800)
99 3upu_A ATP-dependent DNA helic 97.5 0.00053 1.8E-08 71.5 12.1 64 34-97 21-93 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.5 0.0005 1.7E-08 73.6 11.7 59 38-96 189-250 (574)
101 3lfu_A DNA helicase II; SF1 he 96.9 0.17 6E-06 54.6 25.0 63 37-101 8-77 (647)
102 3hgt_A HDA1 complex subunit 3; 96.7 0.0058 2E-07 59.8 9.4 124 244-372 109-244 (328)
103 3ec2_A DNA replication protein 96.7 0.012 4E-07 52.6 10.8 30 41-70 17-55 (180)
104 3vkw_A Replicase large subunit 96.4 0.008 2.7E-07 61.6 9.0 43 56-100 164-206 (446)
105 3te6_A Regulatory protein SIR3 96.2 0.047 1.6E-06 53.6 12.8 18 53-70 45-62 (318)
106 2o0j_A Terminase, DNA packagin 95.7 0.099 3.4E-06 52.7 13.0 63 38-100 163-230 (385)
107 2qby_B CDC6 homolog 3, cell di 95.6 0.096 3.3E-06 52.4 12.6 17 54-70 46-62 (384)
108 2chg_A Replication factor C sm 95.5 0.14 4.7E-06 46.4 12.4 17 54-70 39-55 (226)
109 2b8t_A Thymidine kinase; deoxy 95.3 0.013 4.6E-07 54.5 4.5 37 52-88 11-50 (223)
110 3vfd_A Spastin; ATPase, microt 95.1 0.071 2.4E-06 53.9 9.7 33 53-85 148-180 (389)
111 3eie_A Vacuolar protein sortin 95.0 0.096 3.3E-06 51.4 9.9 59 11-72 11-70 (322)
112 1sxj_B Activator 1 37 kDa subu 94.8 0.13 4.5E-06 49.9 10.4 16 55-70 44-59 (323)
113 1jbk_A CLPB protein; beta barr 94.8 0.25 8.4E-06 43.5 11.3 17 54-70 44-60 (195)
114 4a1f_A DNAB helicase, replicat 94.7 0.071 2.4E-06 52.8 8.2 143 53-203 46-206 (338)
115 2r6a_A DNAB helicase, replicat 94.7 0.081 2.8E-06 54.7 9.0 150 46-201 192-362 (454)
116 2p65_A Hypothetical protein PF 94.7 0.11 3.9E-06 45.6 8.7 18 53-70 43-60 (187)
117 1fnn_A CDC6P, cell division co 94.6 0.24 8.3E-06 49.4 11.9 16 55-70 46-61 (389)
118 1sxj_A Activator 1 95 kDa subu 94.5 0.098 3.4E-06 55.1 9.1 43 158-204 148-190 (516)
119 2q6t_A DNAB replication FORK h 94.5 0.075 2.6E-06 54.8 7.9 152 47-202 190-362 (444)
120 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.081 2.8E-06 52.1 7.7 54 14-71 8-63 (322)
121 1gm5_A RECG; helicase, replica 94.3 0.078 2.7E-06 58.6 8.1 74 258-331 417-495 (780)
122 2v1u_A Cell division control p 94.2 0.24 8.2E-06 49.3 11.0 18 53-70 44-61 (387)
123 3bos_A Putative DNA replicatio 94.2 0.13 4.4E-06 47.5 8.4 18 53-70 52-69 (242)
124 1l8q_A Chromosomal replication 94.2 0.11 3.9E-06 50.8 8.3 19 53-71 37-55 (324)
125 1d2n_A N-ethylmaleimide-sensit 94.2 0.1 3.6E-06 49.6 7.8 18 54-71 65-82 (272)
126 3pvs_A Replication-associated 94.2 0.082 2.8E-06 54.6 7.4 21 54-74 51-71 (447)
127 2zpa_A Uncharacterized protein 94.2 0.1 3.5E-06 56.1 8.3 55 38-92 175-231 (671)
128 3h4m_A Proteasome-activating n 94.1 0.054 1.9E-06 51.9 5.7 55 15-72 14-70 (285)
129 2kjq_A DNAA-related protein; s 94.1 0.12 4.1E-06 44.6 7.4 18 52-69 35-52 (149)
130 1iqp_A RFCS; clamp loader, ext 94.1 0.41 1.4E-05 46.4 12.2 16 55-70 48-63 (327)
131 3u61_B DNA polymerase accessor 94.1 0.19 6.5E-06 49.1 9.8 52 5-72 13-67 (324)
132 3cf0_A Transitional endoplasmi 94.1 0.33 1.1E-05 47.0 11.4 21 52-72 48-68 (301)
133 3b9p_A CG5977-PA, isoform A; A 94.1 0.57 1.9E-05 45.0 13.0 19 53-71 54-72 (297)
134 2zan_A Vacuolar protein sortin 94.0 0.15 5E-06 52.6 9.1 19 54-72 168-186 (444)
135 1a5t_A Delta prime, HOLB; zinc 94.0 0.087 3E-06 52.1 7.1 33 39-71 3-42 (334)
136 3syl_A Protein CBBX; photosynt 94.0 0.86 2.9E-05 43.9 14.2 17 54-70 68-84 (309)
137 3bh0_A DNAB-like replicative h 93.8 0.55 1.9E-05 45.8 12.3 150 46-202 57-230 (315)
138 2qp9_X Vacuolar protein sortin 93.7 0.2 6.8E-06 49.9 9.1 18 54-71 85-102 (355)
139 2orw_A Thymidine kinase; TMTK, 93.6 0.14 4.6E-06 46.0 6.9 36 53-88 3-41 (184)
140 1sxj_D Activator 1 41 kDa subu 93.5 0.48 1.7E-05 46.5 11.6 17 54-70 59-75 (353)
141 2j9r_A Thymidine kinase; TK1, 93.5 0.13 4.5E-06 47.2 6.7 37 53-89 28-67 (214)
142 2qby_A CDC6 homolog 1, cell di 93.4 0.28 9.7E-06 48.7 9.8 18 53-70 45-62 (386)
143 2r2a_A Uncharacterized protein 93.4 0.049 1.7E-06 49.6 3.6 17 55-71 7-23 (199)
144 1uaa_A REP helicase, protein ( 93.2 0.063 2.2E-06 58.5 4.8 61 38-100 2-69 (673)
145 1pjr_A PCRA; DNA repair, DNA r 93.1 0.1 3.4E-06 57.4 6.2 62 37-100 10-78 (724)
146 2w58_A DNAI, primosome compone 93.1 0.47 1.6E-05 42.6 9.9 17 54-70 55-71 (202)
147 1jr3_A DNA polymerase III subu 93.0 1.1 3.8E-05 44.3 13.4 49 6-70 4-55 (373)
148 2dr3_A UPF0273 protein PH0284; 93.0 0.9 3.1E-05 41.9 11.9 50 52-102 22-74 (247)
149 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.17 5.9E-06 47.6 6.9 19 53-71 39-57 (262)
150 3oiy_A Reverse gyrase helicase 92.9 0.18 6.1E-06 51.2 7.4 77 256-332 62-145 (414)
151 1njg_A DNA polymerase III subu 92.9 1 3.4E-05 41.0 12.1 16 55-70 47-62 (250)
152 1sxj_C Activator 1 40 kDa subu 92.9 0.56 1.9E-05 46.1 10.8 40 159-204 111-150 (340)
153 4b4t_J 26S protease regulatory 92.8 0.1 3.6E-06 52.7 5.3 56 13-71 143-200 (405)
154 1xx6_A Thymidine kinase; NESG, 92.7 0.11 3.9E-06 46.9 4.9 36 53-88 8-46 (191)
155 3u4q_A ATP-dependent helicase/ 92.5 0.15 5.2E-06 59.5 7.0 62 37-100 9-79 (1232)
156 2qgz_A Helicase loader, putati 92.5 0.21 7.1E-06 48.8 6.9 18 53-70 152-169 (308)
157 3d8b_A Fidgetin-like protein 1 92.4 0.41 1.4E-05 47.7 9.1 22 53-74 117-138 (357)
158 1g5t_A COB(I)alamin adenosyltr 92.4 0.19 6.3E-06 45.5 5.9 131 54-206 29-165 (196)
159 1lv7_A FTSH; alpha/beta domain 92.3 0.48 1.7E-05 44.4 9.1 19 53-71 45-63 (257)
160 3pfi_A Holliday junction ATP-d 92.2 0.86 3E-05 44.6 11.3 19 54-72 56-74 (338)
161 1w5s_A Origin recognition comp 92.2 1.2 4E-05 44.7 12.5 17 54-70 51-69 (412)
162 2cvh_A DNA repair and recombin 92.1 0.24 8.2E-06 45.1 6.5 32 53-85 20-52 (220)
163 2gno_A DNA polymerase III, gam 91.8 0.39 1.3E-05 46.7 7.9 42 157-204 81-122 (305)
164 3hu3_A Transitional endoplasmi 91.7 0.29 1E-05 51.0 7.3 21 54-74 239-259 (489)
165 2z4s_A Chromosomal replication 91.6 0.66 2.3E-05 47.6 9.8 18 54-71 131-148 (440)
166 3bgw_A DNAB-like replicative h 91.3 1.8 6.2E-05 44.4 12.8 150 46-202 186-359 (444)
167 2orv_A Thymidine kinase; TP4A 91.3 0.46 1.6E-05 44.0 7.3 37 52-88 18-57 (234)
168 1sxj_E Activator 1 40 kDa subu 91.1 1.5 5.1E-05 43.1 11.6 51 7-71 3-54 (354)
169 4b4t_H 26S protease regulatory 91.1 0.32 1.1E-05 49.9 6.7 57 12-71 203-261 (467)
170 4b4t_L 26S protease subunit RP 90.9 0.17 5.9E-06 51.8 4.5 57 12-71 175-233 (437)
171 3t15_A Ribulose bisphosphate c 90.7 0.48 1.6E-05 45.7 7.3 18 54-71 37-54 (293)
172 1nlf_A Regulatory protein REPA 90.5 1.2 4.2E-05 42.3 10.0 21 50-70 27-47 (279)
173 2w0m_A SSO2452; RECA, SSPF, un 90.5 2.8 9.6E-05 38.0 12.2 34 52-85 22-58 (235)
174 2z43_A DNA repair and recombin 90.4 1 3.4E-05 44.1 9.4 58 46-103 95-167 (324)
175 3dm5_A SRP54, signal recogniti 90.2 4 0.00014 41.7 13.9 45 55-99 102-151 (443)
176 3kl4_A SRP54, signal recogniti 90.1 3.4 0.00012 42.0 13.3 50 157-208 178-228 (433)
177 1v5w_A DMC1, meiotic recombina 90.0 0.56 1.9E-05 46.4 7.3 42 47-88 111-166 (343)
178 3cf2_A TER ATPase, transitiona 90.0 0.5 1.7E-05 52.1 7.5 66 13-79 472-537 (806)
179 1n0w_A DNA repair protein RAD5 89.6 2.8 9.7E-05 38.4 11.5 34 52-85 23-65 (243)
180 3e2i_A Thymidine kinase; Zn-bi 89.6 0.69 2.3E-05 42.4 6.8 38 52-89 27-67 (219)
181 1u94_A RECA protein, recombina 89.6 2.6 9E-05 41.7 11.8 63 24-86 15-99 (356)
182 4b4t_I 26S protease regulatory 89.4 0.61 2.1E-05 47.4 7.0 57 12-71 176-234 (437)
183 1q57_A DNA primase/helicase; d 89.1 1 3.5E-05 46.9 8.8 146 53-203 242-404 (503)
184 2eyq_A TRCF, transcription-rep 89.0 1.7 5.9E-05 50.2 11.2 76 256-331 650-730 (1151)
185 4ddu_A Reverse gyrase; topoiso 88.8 0.55 1.9E-05 54.0 6.9 77 256-332 119-202 (1104)
186 2hjv_A ATP-dependent RNA helic 88.7 1.4 4.9E-05 38.0 8.1 60 77-138 34-93 (163)
187 2rb4_A ATP-dependent RNA helic 88.5 1.4 4.7E-05 38.6 8.0 79 57-138 12-92 (175)
188 2zts_A Putative uncharacterize 88.3 0.089 3.1E-06 49.1 -0.0 56 146-202 123-181 (251)
189 1xp8_A RECA protein, recombina 88.2 4.8 0.00016 40.0 12.6 43 45-87 60-111 (366)
190 2fna_A Conserved hypothetical 88.1 6 0.0002 38.3 13.3 16 54-69 31-46 (357)
191 2qen_A Walker-type ATPase; unk 88.0 7.5 0.00026 37.5 13.9 17 53-69 31-47 (350)
192 1w4r_A Thymidine kinase; type 87.8 0.69 2.4E-05 41.7 5.5 34 53-87 20-57 (195)
193 4b4t_K 26S protease regulatory 87.8 0.63 2.2E-05 47.5 5.9 56 13-71 167-224 (428)
194 1ixz_A ATP-dependent metallopr 87.7 1.6 5.5E-05 40.7 8.4 18 54-71 50-67 (254)
195 1r6b_X CLPA protein; AAA+, N-t 87.4 2 6.8E-05 47.3 10.1 18 53-70 207-224 (758)
196 1cr0_A DNA primase/helicase; R 87.4 6.4 0.00022 37.5 12.7 34 52-85 34-71 (296)
197 2p6n_A ATP-dependent RNA helic 87.3 3.7 0.00013 36.6 10.2 72 63-137 39-111 (191)
198 1t6n_A Probable ATP-dependent 87.1 3.5 0.00012 37.2 10.2 71 258-331 82-163 (220)
199 3ber_A Probable ATP-dependent 87.0 2.5 8.6E-05 39.3 9.3 71 257-331 110-191 (249)
200 1t5i_A C_terminal domain of A 87.0 2 6.8E-05 37.6 8.1 60 77-138 30-89 (172)
201 3cf2_A TER ATPase, transitiona 86.8 1.5 5.3E-05 48.3 8.7 18 54-71 239-256 (806)
202 1fuk_A Eukaryotic initiation f 86.7 1.7 5.7E-05 37.6 7.4 60 77-138 29-88 (165)
203 3eaq_A Heat resistant RNA depe 86.6 6.4 0.00022 35.6 11.6 61 76-138 29-89 (212)
204 1oyw_A RECQ helicase, ATP-depe 86.5 1.2 4.2E-05 46.7 7.4 59 258-316 65-123 (523)
205 3cpe_A Terminase, DNA packagin 86.1 1.2 4.2E-05 47.5 7.4 63 38-100 163-230 (592)
206 2v1x_A ATP-dependent DNA helic 85.3 1.1 3.9E-05 47.7 6.5 59 258-316 84-144 (591)
207 3hws_A ATP-dependent CLP prote 85.2 2.9 9.9E-05 41.3 9.2 31 52-82 50-80 (363)
208 3fe2_A Probable ATP-dependent 85.1 2.3 7.8E-05 39.3 7.9 71 257-331 101-181 (242)
209 3cmu_A Protein RECA, recombina 85.1 1.5 5.2E-05 52.9 8.0 43 47-89 1415-1466(2050)
210 1vma_A Cell division protein F 85.1 11 0.00039 36.2 13.1 32 54-85 105-139 (306)
211 2i1q_A DNA repair and recombin 85.1 2.8 9.6E-05 40.7 8.9 25 46-70 86-115 (322)
212 2ce7_A Cell division protein F 85.0 1.7 5.9E-05 44.9 7.5 18 54-71 50-67 (476)
213 3n70_A Transport activator; si 84.6 0.68 2.3E-05 39.3 3.6 21 52-72 23-43 (145)
214 2vhj_A Ntpase P4, P4; non- hyd 84.4 1.4 4.8E-05 43.0 6.1 19 52-70 122-140 (331)
215 2jgn_A DBX, DDX3, ATP-dependen 84.1 2 6.8E-05 38.1 6.7 72 63-137 29-103 (185)
216 1qvr_A CLPB protein; coiled co 83.9 3.4 0.00012 46.1 10.0 17 54-70 192-208 (854)
217 3co5_A Putative two-component 83.9 0.72 2.5E-05 39.0 3.5 20 51-70 25-44 (143)
218 2ehv_A Hypothetical protein PH 83.3 2 6.9E-05 39.6 6.7 34 52-85 29-66 (251)
219 2dhr_A FTSH; AAA+ protein, hex 82.7 2.9 9.8E-05 43.5 8.1 19 54-72 65-83 (499)
220 2oxc_A Probable ATP-dependent 82.5 1.9 6.4E-05 39.5 6.0 55 257-316 91-150 (230)
221 2yhs_A FTSY, cell division pro 81.2 12 0.00042 38.6 12.0 30 55-84 295-327 (503)
222 1e9r_A Conjugal transfer prote 80.7 0.89 3E-05 46.4 3.3 41 52-92 52-95 (437)
223 1p9r_A General secretion pathw 80.3 2.2 7.6E-05 43.3 6.1 31 39-69 151-183 (418)
224 3cmw_A Protein RECA, recombina 79.8 8.6 0.00029 45.9 11.5 89 53-171 732-823 (1706)
225 3iuy_A Probable ATP-dependent 79.8 3 0.0001 37.9 6.4 71 257-331 93-172 (228)
226 2zr9_A Protein RECA, recombina 79.7 7.1 0.00024 38.4 9.5 42 45-86 47-97 (349)
227 1ypw_A Transitional endoplasmi 79.4 3.2 0.00011 45.9 7.5 21 53-73 238-258 (806)
228 3i32_A Heat resistant RNA depe 79.4 6.4 0.00022 37.9 8.8 60 77-138 27-86 (300)
229 3b85_A Phosphate starvation-in 79.2 2 7E-05 39.0 4.9 34 37-70 6-39 (208)
230 2gxq_A Heat resistant RNA depe 79.0 4.3 0.00015 36.1 7.1 71 257-331 71-149 (207)
231 1qvr_A CLPB protein; coiled co 78.2 2.6 8.8E-05 47.1 6.3 17 55-71 590-606 (854)
232 1vec_A ATP-dependent RNA helic 78.1 5 0.00017 35.6 7.2 70 258-331 71-151 (206)
233 2i4i_A ATP-dependent RNA helic 77.7 7.8 0.00027 38.5 9.3 60 77-138 275-334 (417)
234 2r44_A Uncharacterized protein 77.6 2.7 9.3E-05 40.8 5.7 24 48-71 41-64 (331)
235 3ly5_A ATP-dependent RNA helic 77.5 7.8 0.00027 36.2 8.7 71 257-331 125-206 (262)
236 2x8a_A Nuclear valosin-contain 77.4 1.3 4.4E-05 42.2 3.1 55 13-71 5-62 (274)
237 3lda_A DNA repair protein RAD5 77.3 12 0.00041 37.6 10.4 34 53-86 178-220 (400)
238 1ofh_A ATP-dependent HSL prote 77.3 4.7 0.00016 38.3 7.2 19 53-71 50-68 (310)
239 3bor_A Human initiation factor 77.1 6.6 0.00023 35.9 8.0 72 257-331 97-178 (237)
240 1sky_E F1-ATPase, F1-ATP synth 76.8 11 0.00039 38.6 10.1 25 46-70 141-168 (473)
241 3io5_A Recombination and repai 76.0 3.3 0.00011 40.3 5.5 46 55-103 30-80 (333)
242 2pl3_A Probable ATP-dependent 75.0 6.9 0.00024 35.7 7.4 55 257-316 96-154 (236)
243 1wrb_A DJVLGB; RNA helicase, D 74.9 5.8 0.0002 36.7 7.0 55 258-316 100-158 (253)
244 3cmu_A Protein RECA, recombina 74.4 19 0.00064 43.8 12.4 97 45-171 369-474 (2050)
245 3hr8_A Protein RECA; alpha and 74.2 9.7 0.00033 37.6 8.6 45 45-89 47-100 (356)
246 2chq_A Replication factor C sm 73.7 3.4 0.00011 39.6 5.1 52 5-70 4-55 (319)
247 3e70_C DPA, signal recognition 73.6 17 0.00059 35.3 10.2 47 159-209 212-259 (328)
248 1um8_A ATP-dependent CLP prote 73.5 10 0.00035 37.4 8.8 20 53-72 72-91 (376)
249 3fht_A ATP-dependent RNA helic 73.4 8.3 0.00028 38.2 8.1 60 77-138 265-324 (412)
250 3nwn_A Kinesin-like protein KI 73.3 2.3 7.8E-05 42.2 3.7 25 46-70 96-122 (359)
251 2v9p_A Replication protein E1; 73.3 2.1 7.1E-05 41.5 3.4 34 52-86 125-159 (305)
252 3nbx_X ATPase RAVA; AAA+ ATPas 73.2 3.3 0.00011 43.0 5.2 26 46-71 34-59 (500)
253 1hv8_A Putative ATP-dependent 72.7 9.5 0.00033 36.9 8.3 60 77-138 237-296 (367)
254 3pey_A ATP-dependent RNA helic 72.4 9 0.00031 37.6 8.1 59 78-138 243-301 (395)
255 1xti_A Probable ATP-dependent 72.4 9.7 0.00033 37.4 8.3 60 77-138 249-308 (391)
256 1bg2_A Kinesin; motor protein, 72.2 2.7 9.3E-05 41.0 4.0 25 46-70 69-95 (325)
257 1s2m_A Putative ATP-dependent 72.0 9.2 0.00032 37.8 8.1 60 77-138 257-316 (400)
258 3eme_A Rhodanese-like domain p 71.7 2.9 0.0001 32.9 3.4 37 257-293 55-91 (103)
259 2l82_A Designed protein OR32; 71.6 13 0.00045 29.3 6.9 52 261-312 5-56 (162)
260 3hjh_A Transcription-repair-co 71.3 5.7 0.0002 41.0 6.4 50 52-101 13-62 (483)
261 1qde_A EIF4A, translation init 71.2 3.3 0.00011 37.5 4.1 55 257-316 81-139 (224)
262 3gk5_A Uncharacterized rhodane 71.1 3 0.0001 33.3 3.4 38 257-294 54-91 (108)
263 3foj_A Uncharacterized protein 71.0 2.9 9.9E-05 32.7 3.2 37 257-293 55-91 (100)
264 4b4t_M 26S protease regulatory 70.7 2.8 9.4E-05 42.8 3.8 57 12-71 175-233 (434)
265 1tf7_A KAIC; homohexamer, hexa 70.6 22 0.00076 36.9 10.9 36 52-87 280-318 (525)
266 2vvg_A Kinesin-2; motor protei 70.5 3.1 0.00011 41.1 4.0 24 47-70 82-107 (350)
267 3dc4_A Kinesin-like protein NO 70.5 2.9 9.8E-05 41.2 3.7 24 47-70 87-112 (344)
268 2y65_A Kinesin, kinesin heavy 70.2 3.2 0.00011 41.3 4.0 24 47-70 77-102 (365)
269 4a14_A Kinesin, kinesin-like p 69.9 3.3 0.00011 40.9 4.0 24 47-70 76-101 (344)
270 3b6u_A Kinesin-like protein KI 69.8 3.1 0.0001 41.5 3.7 24 47-70 94-119 (372)
271 2j0s_A ATP-dependent RNA helic 69.7 11 0.00037 37.4 8.1 59 78-138 276-334 (410)
272 3iwh_A Rhodanese-like domain p 69.6 3.5 0.00012 32.7 3.4 37 257-293 55-91 (103)
273 3a8t_A Adenylate isopentenyltr 69.6 3 0.0001 41.0 3.5 17 54-70 41-57 (339)
274 2h58_A Kinesin-like protein KI 69.6 3.4 0.00012 40.5 4.0 26 45-70 71-98 (330)
275 3gbj_A KIF13B protein; kinesin 69.2 3.3 0.00011 41.0 3.8 25 46-70 84-110 (354)
276 2bjv_A PSP operon transcriptio 69.2 3.5 0.00012 38.5 4.0 21 52-72 28-48 (265)
277 1goj_A Kinesin, kinesin heavy 69.1 3.1 0.00011 41.2 3.6 24 47-70 73-98 (355)
278 3lre_A Kinesin-like protein KI 68.8 3.2 0.00011 41.1 3.7 24 47-70 98-123 (355)
279 1t5c_A CENP-E protein, centrom 68.7 3.3 0.00011 40.8 3.7 25 46-70 69-95 (349)
280 2zfi_A Kinesin-like protein KI 68.7 3.6 0.00012 40.9 4.0 25 46-70 81-107 (366)
281 2nr8_A Kinesin-like protein KI 68.5 3.4 0.00011 41.0 3.7 25 46-70 95-121 (358)
282 1x88_A Kinesin-like protein KI 67.1 3.4 0.00012 41.0 3.4 25 46-70 80-106 (359)
283 2wbe_C Bipolar kinesin KRP-130 67.1 3.7 0.00013 41.0 3.7 24 47-70 93-118 (373)
284 2heh_A KIF2C protein; kinesin, 67.1 3.6 0.00012 41.1 3.6 25 46-70 126-152 (387)
285 1v8k_A Kinesin-like protein KI 67.0 3.7 0.00013 41.4 3.7 25 46-70 146-172 (410)
286 4etp_A Kinesin-like protein KA 66.9 4.3 0.00015 40.9 4.2 26 46-71 132-159 (403)
287 4fcw_A Chaperone protein CLPB; 66.8 2.7 9.2E-05 40.3 2.6 17 55-71 49-65 (311)
288 2d7d_A Uvrabc system protein B 66.6 19 0.00067 38.6 9.6 83 76-170 443-525 (661)
289 1c4o_A DNA nucleotide excision 66.6 20 0.00068 38.6 9.7 82 76-169 437-518 (664)
290 3exa_A TRNA delta(2)-isopenten 66.6 4 0.00014 39.7 3.7 16 55-70 5-20 (322)
291 1ls1_A Signal recognition part 66.4 89 0.0031 29.5 13.6 33 53-85 98-133 (295)
292 3u06_A Protein claret segregat 66.1 4.2 0.00014 41.1 4.0 26 45-70 129-156 (412)
293 4a2p_A RIG-I, retinoic acid in 66.0 5.9 0.0002 41.2 5.3 70 258-331 55-135 (556)
294 2oap_1 GSPE-2, type II secreti 65.9 3.1 0.00011 43.4 3.0 31 39-69 245-276 (511)
295 3foz_A TRNA delta(2)-isopenten 65.6 4.2 0.00014 39.4 3.6 15 56-70 13-27 (316)
296 2p5t_B PEZT; postsegregational 65.5 27 0.00094 32.2 9.4 18 54-71 33-50 (253)
297 3g5j_A Putative ATP/GTP bindin 65.4 5.3 0.00018 32.8 3.9 37 259-295 90-127 (134)
298 2owm_A Nckin3-434, related to 65.2 4.5 0.00015 41.3 4.0 24 47-70 129-154 (443)
299 3tbk_A RIG-I helicase domain; 65.2 5.4 0.00018 41.4 4.8 70 258-331 52-132 (555)
300 1wv9_A Rhodanese homolog TT165 65.1 4.2 0.00014 31.4 3.0 35 259-293 54-88 (94)
301 1kgd_A CASK, peripheral plasma 65.0 3.9 0.00013 35.8 3.2 19 52-70 4-22 (180)
302 2jtq_A Phage shock protein E; 64.8 9.9 0.00034 28.4 5.1 37 256-293 39-76 (85)
303 2gza_A Type IV secretion syste 64.6 4.2 0.00015 40.3 3.6 20 50-69 172-191 (361)
304 3cmw_A Protein RECA, recombina 64.5 10 0.00035 45.3 7.2 90 53-172 1431-1523(1706)
305 4a2q_A RIG-I, retinoic acid in 64.3 9.1 0.00031 42.2 6.6 70 258-331 296-376 (797)
306 1gvn_B Zeta; postsegregational 64.3 32 0.0011 32.5 9.8 32 55-86 35-66 (287)
307 2db3_A ATP-dependent RNA helic 64.2 26 0.0009 35.2 9.7 59 78-138 300-358 (434)
308 3cob_A Kinesin heavy chain-lik 64.2 3.9 0.00013 40.6 3.2 25 46-70 71-97 (369)
309 3vaa_A Shikimate kinase, SK; s 63.8 4.2 0.00014 36.2 3.1 20 52-71 24-43 (199)
310 1lvg_A Guanylate kinase, GMP k 63.6 4 0.00014 36.4 3.0 19 52-70 3-21 (198)
311 3flh_A Uncharacterized protein 63.2 4.6 0.00016 33.0 3.0 38 257-294 70-109 (124)
312 1tue_A Replication protein E1; 63.2 8.2 0.00028 35.0 4.9 45 23-70 27-75 (212)
313 1u0j_A DNA replication protein 62.7 6.8 0.00023 37.0 4.4 46 22-71 71-122 (267)
314 2yjt_D ATP-dependent RNA helic 66.6 1.6 5.4E-05 38.0 0.0 58 78-137 30-87 (170)
315 3bfn_A Kinesin-like protein KI 62.4 4 0.00014 40.8 2.9 31 40-70 76-116 (388)
316 4ag6_A VIRB4 ATPase, type IV s 62.4 5.9 0.0002 39.5 4.3 38 52-89 34-74 (392)
317 3t0q_A AGR253WP; kinesin, alph 62.2 4.1 0.00014 40.2 3.0 26 46-71 77-104 (349)
318 1f9v_A Kinesin-like protein KA 62.2 4.1 0.00014 40.2 3.0 25 47-71 77-103 (347)
319 2eyu_A Twitching motility prot 62.0 3.7 0.00013 38.7 2.5 19 51-69 23-41 (261)
320 2xxa_A Signal recognition part 61.8 1.2E+02 0.0041 30.5 14.0 41 55-95 102-148 (433)
321 2fsx_A RV0390, COG0607: rhodan 61.5 9.4 0.00032 32.2 4.8 37 257-293 79-116 (148)
322 3tau_A Guanylate kinase, GMP k 61.5 4.8 0.00016 36.2 3.1 20 52-71 7-26 (208)
323 2ffh_A Protein (FFH); SRP54, s 61.3 73 0.0025 32.1 12.2 41 55-95 100-145 (425)
324 1gku_B Reverse gyrase, TOP-RG; 61.0 7.3 0.00025 44.5 5.2 73 257-331 98-180 (1054)
325 2j37_W Signal recognition part 60.9 92 0.0031 32.1 13.1 32 55-86 103-137 (504)
326 2pt7_A CAG-ALFA; ATPase, prote 60.8 4.7 0.00016 39.4 3.1 20 50-69 168-187 (330)
327 1hqc_A RUVB; extended AAA-ATPa 60.7 8 0.00027 37.1 4.8 18 54-71 39-56 (324)
328 3uk6_A RUVB-like 2; hexameric 60.5 4.2 0.00014 39.9 2.8 18 54-71 71-88 (368)
329 3trf_A Shikimate kinase, SK; a 60.3 5.1 0.00018 34.9 3.0 19 53-71 5-23 (185)
330 2r62_A Cell division protease 59.9 3.7 0.00013 38.4 2.1 19 53-71 44-62 (268)
331 3vkg_A Dynein heavy chain, cyt 59.6 11 0.00037 47.9 6.5 49 22-72 873-925 (3245)
332 1ojl_A Transcriptional regulat 59.6 4.8 0.00016 38.8 2.9 20 52-71 24-43 (304)
333 2rep_A Kinesin-like protein KI 59.6 4.6 0.00016 40.2 2.8 37 34-70 85-133 (376)
334 3crm_A TRNA delta(2)-isopenten 59.5 6.2 0.00021 38.4 3.6 16 55-70 7-22 (323)
335 1ry6_A Internal kinesin; kines 59.4 6.3 0.00022 39.0 3.7 22 49-70 78-102 (360)
336 2qmh_A HPR kinase/phosphorylas 59.4 3.7 0.00013 37.0 1.9 17 53-69 34-50 (205)
337 3nhv_A BH2092 protein; alpha-b 59.4 6.9 0.00023 33.0 3.5 37 257-293 71-109 (144)
338 1qxn_A SUD, sulfide dehydrogen 59.3 7.6 0.00026 32.4 3.8 38 257-294 81-119 (137)
339 4akg_A Glutathione S-transfera 59.3 11 0.00038 47.2 6.5 50 22-73 890-943 (2695)
340 1g41_A Heat shock protein HSLU 58.9 9.8 0.00034 38.8 5.1 19 53-71 50-68 (444)
341 3sqw_A ATP-dependent RNA helic 58.9 21 0.00071 37.5 8.0 60 77-138 287-349 (579)
342 3hix_A ALR3790 protein; rhodan 58.5 6.1 0.00021 31.2 2.9 38 257-294 51-89 (106)
343 1kag_A SKI, shikimate kinase I 58.2 9.9 0.00034 32.5 4.5 20 53-72 4-23 (173)
344 3i5x_A ATP-dependent RNA helic 58.1 35 0.0012 35.5 9.6 60 77-138 338-400 (563)
345 2fsf_A Preprotein translocase 57.9 21 0.00073 39.2 7.8 57 255-317 112-172 (853)
346 3lw7_A Adenylate kinase relate 57.5 4.8 0.00017 34.3 2.3 16 56-71 4-19 (179)
347 3tr0_A Guanylate kinase, GMP k 57.5 6.2 0.00021 34.9 3.1 19 52-70 6-24 (205)
348 1qhx_A CPT, protein (chloramph 57.3 10 0.00034 32.7 4.4 19 53-71 3-21 (178)
349 2ze6_A Isopentenyl transferase 57.2 6 0.0002 36.9 3.0 15 56-70 4-18 (253)
350 1tf5_A Preprotein translocase 57.0 25 0.00086 38.7 8.2 57 254-316 120-180 (844)
351 1gmx_A GLPE protein; transfera 56.9 7.3 0.00025 30.8 3.1 38 257-294 57-95 (108)
352 3eiq_A Eukaryotic initiation f 56.6 12 0.0004 37.1 5.3 59 78-138 280-338 (414)
353 2k0z_A Uncharacterized protein 56.6 11 0.00036 30.0 4.1 38 256-293 54-91 (110)
354 3iij_A Coilin-interacting nucl 56.6 7.6 0.00026 33.7 3.5 20 52-71 10-29 (180)
355 2j41_A Guanylate kinase; GMP, 56.5 5.7 0.0002 35.2 2.7 21 51-71 4-24 (207)
356 1z6g_A Guanylate kinase; struc 56.3 7.5 0.00026 35.2 3.5 21 50-70 20-40 (218)
357 1tq1_A AT5G66040, senescence-a 56.0 8 0.00028 31.8 3.3 38 257-294 81-119 (129)
358 3a00_A Guanylate kinase, GMP k 55.7 7.6 0.00026 34.1 3.3 17 54-70 2-18 (186)
359 3fmo_B ATP-dependent RNA helic 55.5 6.7 0.00023 37.6 3.1 68 258-332 162-241 (300)
360 3dkp_A Probable ATP-dependent 55.5 3.1 0.00011 38.3 0.7 72 257-331 97-180 (245)
361 1rj9_A FTSY, signal recognitio 55.4 8.3 0.00028 37.1 3.8 33 53-85 102-137 (304)
362 2bdt_A BH3686; alpha-beta prot 55.4 11 0.00036 33.0 4.3 18 55-72 4-21 (189)
363 3d3q_A TRNA delta(2)-isopenten 55.1 7.8 0.00027 38.0 3.6 16 55-70 9-24 (340)
364 1zp6_A Hypothetical protein AT 55.1 5.6 0.00019 34.8 2.3 21 51-71 7-27 (191)
365 3dr5_A Putative O-methyltransf 55.0 1.2E+02 0.004 27.1 14.1 135 25-169 24-166 (221)
366 1q0u_A Bstdead; DEAD protein, 55.0 5.6 0.00019 35.9 2.4 55 258-316 72-134 (219)
367 2c9o_A RUVB-like 1; hexameric 54.9 6.4 0.00022 40.3 3.1 18 54-71 64-81 (456)
368 3ney_A 55 kDa erythrocyte memb 54.8 7.6 0.00026 34.8 3.2 19 52-70 18-36 (197)
369 2lci_A Protein OR36; structura 54.6 69 0.0024 24.4 12.7 107 196-316 3-109 (134)
370 3nwj_A ATSK2; P loop, shikimat 54.3 9.1 0.00031 35.7 3.7 22 51-72 46-67 (250)
371 1y63_A LMAJ004144AAA protein; 54.3 7.5 0.00026 34.0 3.0 20 52-71 9-28 (184)
372 2qor_A Guanylate kinase; phosp 53.8 8.8 0.0003 34.2 3.5 20 51-70 10-29 (204)
373 1iy2_A ATP-dependent metallopr 53.7 11 0.00039 35.3 4.4 18 54-71 74-91 (278)
374 1znw_A Guanylate kinase, GMP k 53.5 7.8 0.00027 34.6 3.1 22 49-70 16-37 (207)
375 1wp9_A ATP-dependent RNA helic 53.4 30 0.001 34.6 7.9 59 77-137 360-426 (494)
376 3tqc_A Pantothenate kinase; bi 53.1 18 0.00061 35.1 5.7 15 56-70 95-109 (321)
377 3b9q_A Chloroplast SRP recepto 52.7 8.6 0.00029 37.0 3.4 33 53-85 100-135 (302)
378 3kb2_A SPBC2 prophage-derived 52.7 8 0.00027 33.0 2.9 17 55-71 3-19 (173)
379 1fuu_A Yeast initiation factor 52.0 21 0.00072 34.9 6.3 70 257-331 88-167 (394)
380 2ewv_A Twitching motility prot 51.9 6.6 0.00023 39.1 2.5 19 51-69 134-152 (372)
381 3mwy_W Chromo domain-containin 51.7 52 0.0018 36.1 10.0 62 77-138 571-632 (800)
382 3jvv_A Twitching mobility prot 51.5 7.8 0.00027 38.3 2.9 18 52-69 122-139 (356)
383 3eph_A TRNA isopentenyltransfe 51.3 7.5 0.00026 39.1 2.7 15 56-70 5-19 (409)
384 4eun_A Thermoresistant glucoki 51.0 9.2 0.00032 33.9 3.1 20 52-71 28-47 (200)
385 2hhg_A Hypothetical protein RP 51.0 8.1 0.00028 32.0 2.6 38 257-294 85-123 (139)
386 4gp7_A Metallophosphoesterase; 50.9 6.2 0.00021 34.2 1.9 20 52-71 8-27 (171)
387 3d1p_A Putative thiosulfate su 50.8 9.2 0.00032 31.7 2.9 37 257-293 90-127 (139)
388 1c9k_A COBU, adenosylcobinamid 50.7 12 0.0004 33.1 3.7 31 56-87 2-32 (180)
389 1ex7_A Guanylate kinase; subst 50.4 16 0.00055 32.3 4.5 16 54-69 2-17 (186)
390 1kht_A Adenylate kinase; phosp 50.3 9.4 0.00032 33.1 3.0 19 53-71 3-21 (192)
391 1ly1_A Polynucleotide kinase; 50.2 9.5 0.00033 32.7 3.0 16 56-71 5-20 (181)
392 2oca_A DAR protein, ATP-depend 50.2 1.3E+02 0.0045 30.5 12.4 98 78-192 347-444 (510)
393 1g8p_A Magnesium-chelatase 38 50.1 10 0.00035 36.7 3.6 19 53-71 45-63 (350)
394 1nkt_A Preprotein translocase 50.1 31 0.0011 38.2 7.5 58 253-316 147-208 (922)
395 3k1j_A LON protease, ATP-depen 50.0 14 0.00048 39.2 4.9 24 48-71 55-78 (604)
396 3cm0_A Adenylate kinase; ATP-b 49.9 7 0.00024 34.0 2.1 20 52-71 3-22 (186)
397 1in4_A RUVB, holliday junction 49.6 9.7 0.00033 37.0 3.3 18 54-71 52-69 (334)
398 3tb6_A Arabinose metabolism tr 49.4 1.6E+02 0.0053 26.9 16.0 181 89-284 32-226 (298)
399 1knq_A Gluconate kinase; ALFA/ 48.9 8.6 0.00029 33.1 2.5 19 53-71 8-26 (175)
400 1s96_A Guanylate kinase, GMP k 48.7 10 0.00036 34.4 3.1 21 50-70 13-33 (219)
401 4h1g_A Maltose binding protein 48.3 11 0.00038 41.0 3.8 26 45-70 453-480 (715)
402 2l8b_A Protein TRAI, DNA helic 48.1 29 0.00099 30.7 5.6 51 41-91 37-93 (189)
403 1vee_A Proline-rich protein fa 47.7 13 0.00045 30.6 3.4 37 257-293 73-110 (134)
404 1f2t_A RAD50 ABC-ATPase; DNA d 47.7 9 0.00031 32.4 2.4 14 56-69 26-39 (149)
405 3f9v_A Minichromosome maintena 47.3 7.4 0.00025 41.4 2.1 16 55-70 329-344 (595)
406 3uie_A Adenylyl-sulfate kinase 47.3 9.5 0.00033 33.8 2.6 19 52-70 24-42 (200)
407 2ipc_A Preprotein translocase 46.9 29 0.00098 38.6 6.6 59 253-317 115-177 (997)
408 2v6i_A RNA helicase; membrane, 46.9 26 0.00088 35.4 6.1 56 78-139 171-226 (431)
409 2og2_A Putative signal recogni 46.8 12 0.0004 37.1 3.3 32 54-85 158-192 (359)
410 2ykg_A Probable ATP-dependent 46.7 17 0.00059 39.0 5.0 69 259-331 62-141 (696)
411 3lnc_A Guanylate kinase, GMP k 45.9 8.3 0.00029 35.1 2.0 19 52-70 26-44 (231)
412 3pxg_A Negative regulator of g 45.6 19 0.00064 36.9 4.8 18 54-71 202-219 (468)
413 1cke_A CK, MSSA, protein (cyti 45.6 12 0.00041 33.7 3.0 19 54-72 6-24 (227)
414 3dmq_A RNA polymerase-associat 45.6 44 0.0015 37.7 8.2 61 77-137 502-563 (968)
415 1via_A Shikimate kinase; struc 45.4 14 0.00047 31.8 3.3 18 55-72 6-23 (175)
416 2z0m_A 337AA long hypothetical 45.0 27 0.00091 33.2 5.6 69 258-331 56-134 (337)
417 1nij_A Hypothetical protein YJ 44.8 14 0.00049 35.6 3.6 32 56-87 7-39 (318)
418 3t61_A Gluconokinase; PSI-biol 44.6 13 0.00043 33.0 2.9 18 54-71 19-36 (202)
419 2ius_A DNA translocase FTSK; n 44.3 13 0.00045 38.6 3.4 19 52-70 166-184 (512)
420 3ilm_A ALR3790 protein; rhodan 44.3 13 0.00044 31.2 2.8 37 257-293 55-92 (141)
421 1zuh_A Shikimate kinase; alpha 44.3 13 0.00045 31.7 2.9 19 54-72 8-26 (168)
422 2qt1_A Nicotinamide riboside k 44.3 18 0.00062 32.0 4.0 19 53-71 21-39 (207)
423 3m6a_A ATP-dependent protease 43.9 16 0.00055 38.2 4.1 19 53-71 108-126 (543)
424 3kta_A Chromosome segregation 43.9 10 0.00034 32.9 2.1 16 55-70 28-43 (182)
425 3dl0_A Adenylate kinase; phosp 43.6 18 0.00062 32.2 3.9 18 55-72 2-19 (216)
426 3qf7_A RAD50; ABC-ATPase, ATPa 43.1 11 0.00036 37.4 2.4 16 55-70 25-40 (365)
427 3fb4_A Adenylate kinase; psych 43.1 14 0.00047 33.0 3.0 17 56-72 3-19 (216)
428 4gl2_A Interferon-induced heli 43.0 20 0.0007 38.5 4.9 59 78-138 400-472 (699)
429 3egc_A Putative ribose operon 42.7 2E+02 0.0067 26.2 14.2 177 89-284 25-211 (291)
430 2i3b_A HCR-ntpase, human cance 42.7 17 0.00057 32.2 3.4 42 157-203 104-145 (189)
431 1xjc_A MOBB protein homolog; s 42.7 30 0.001 30.0 5.0 14 56-69 7-20 (169)
432 1zd8_A GTP:AMP phosphotransfer 42.7 13 0.00046 33.6 2.8 20 52-71 6-25 (227)
433 2c95_A Adenylate kinase 1; tra 42.6 14 0.00047 32.2 2.9 20 52-71 8-27 (196)
434 3c8u_A Fructokinase; YP_612366 42.3 11 0.00039 33.6 2.3 17 53-69 22-38 (208)
435 1urh_A 3-mercaptopyruvate sulf 42.3 27 0.00093 32.7 5.1 39 257-295 229-268 (280)
436 1tev_A UMP-CMP kinase; ploop, 42.3 15 0.00051 31.9 3.0 19 53-71 3-21 (196)
437 2iyv_A Shikimate kinase, SK; t 42.2 17 0.00059 31.4 3.4 18 54-71 3-20 (184)
438 1ye8_A Protein THEP1, hypothet 42.1 15 0.00052 32.1 3.0 16 55-70 2-17 (178)
439 1e6c_A Shikimate kinase; phosp 42.0 15 0.00053 31.2 3.0 18 54-71 3-20 (173)
440 1yks_A Genome polyprotein [con 41.8 16 0.00054 37.1 3.5 56 78-139 177-232 (440)
441 3asz_A Uridine kinase; cytidin 41.4 12 0.00042 33.2 2.4 19 52-70 5-23 (211)
442 4a2w_A RIG-I, retinoic acid in 41.4 13 0.00045 41.8 3.1 70 258-331 296-376 (936)
443 2bwj_A Adenylate kinase 5; pho 41.3 19 0.00065 31.4 3.6 21 51-71 10-30 (199)
444 3a4m_A L-seryl-tRNA(SEC) kinas 41.2 25 0.00086 32.6 4.6 18 54-71 5-22 (260)
445 4fn4_A Short chain dehydrogena 40.8 61 0.0021 30.1 7.1 59 258-316 31-92 (254)
446 2rhm_A Putative kinase; P-loop 40.7 15 0.00051 32.0 2.8 19 53-71 5-23 (193)
447 4akg_A Glutathione S-transfera 40.7 20 0.00067 45.0 4.6 21 50-70 1264-1284(2695)
448 3tg1_B Dual specificity protei 40.6 19 0.00065 30.6 3.3 36 258-293 93-137 (158)
449 4e22_A Cytidylate kinase; P-lo 40.1 17 0.00057 33.7 3.1 21 52-72 26-46 (252)
450 3pxi_A Negative regulator of g 40.0 22 0.00076 38.8 4.6 17 55-71 523-539 (758)
451 1svm_A Large T antigen; AAA+ f 40.0 18 0.00061 36.0 3.5 19 52-70 168-186 (377)
452 1jjv_A Dephospho-COA kinase; P 40.0 16 0.00056 32.3 2.9 17 56-72 5-21 (206)
453 3ipz_A Monothiol glutaredoxin- 39.7 1.3E+02 0.0044 23.4 8.1 57 258-314 17-79 (109)
454 1pzn_A RAD51, DNA repair and r 39.6 20 0.0007 35.1 3.8 33 54-86 132-173 (349)
455 4a74_A DNA repair and recombin 39.6 13 0.00045 33.3 2.3 20 52-71 24-43 (231)
456 4f67_A UPF0176 protein LPG2838 39.6 27 0.00093 32.8 4.5 44 252-295 175-219 (265)
457 1nks_A Adenylate kinase; therm 39.5 16 0.00055 31.6 2.8 37 56-92 4-42 (194)
458 1zak_A Adenylate kinase; ATP:A 39.4 18 0.00062 32.5 3.2 19 53-71 5-23 (222)
459 3auy_A DNA double-strand break 39.3 12 0.00042 37.0 2.1 14 56-69 28-41 (371)
460 1qf9_A UMP/CMP kinase, protein 39.2 16 0.00055 31.6 2.8 17 55-71 8-24 (194)
461 1aky_A Adenylate kinase; ATP:A 39.1 18 0.00062 32.4 3.2 19 53-71 4-22 (220)
462 3zvl_A Bifunctional polynucleo 38.9 97 0.0033 30.9 8.9 17 55-71 260-276 (416)
463 2if2_A Dephospho-COA kinase; a 38.8 17 0.00057 32.1 2.8 18 55-72 3-20 (204)
464 2qxy_A Response regulator; reg 38.5 1.4E+02 0.005 23.5 10.1 46 157-210 47-92 (142)
465 1r6b_X CLPA protein; AAA+, N-t 38.4 31 0.001 37.7 5.4 17 55-71 490-506 (758)
466 2v54_A DTMP kinase, thymidylat 38.4 19 0.00066 31.6 3.2 20 52-71 3-22 (204)
467 3pxi_A Negative regulator of g 38.3 26 0.0009 38.2 4.8 19 53-71 201-219 (758)
468 1j8m_F SRP54, signal recogniti 38.1 1.3E+02 0.0043 28.5 9.1 31 55-85 100-133 (297)
469 2cdn_A Adenylate kinase; phosp 38.0 19 0.00064 31.7 3.0 18 54-71 21-38 (201)
470 2va8_A SSO2462, SKI2-type heli 37.9 1.1E+02 0.0038 32.8 9.7 67 71-139 245-347 (715)
471 3sr0_A Adenylate kinase; phosp 37.9 19 0.00064 32.4 3.0 16 56-71 3-18 (206)
472 2pez_A Bifunctional 3'-phospho 37.9 17 0.00058 31.3 2.6 19 52-70 4-22 (179)
473 2wv9_A Flavivirin protease NS2 37.6 34 0.0012 36.8 5.5 57 77-139 409-465 (673)
474 3tif_A Uncharacterized ABC tra 37.5 17 0.00059 33.3 2.8 19 52-70 30-48 (235)
475 2r8r_A Sensor protein; KDPD, P 37.2 29 0.00098 31.8 4.1 17 55-71 8-24 (228)
476 1ukz_A Uridylate kinase; trans 37.1 28 0.00096 30.5 4.1 16 55-70 17-32 (203)
477 3b6e_A Interferon-induced heli 37.1 18 0.00062 31.9 2.8 57 257-317 81-141 (216)
478 1ak2_A Adenylate kinase isoenz 37.0 20 0.00069 32.5 3.2 19 53-71 16-34 (233)
479 2pt5_A Shikimate kinase, SK; a 36.9 21 0.0007 30.2 3.0 17 55-71 2-18 (168)
480 3umf_A Adenylate kinase; rossm 36.8 20 0.00068 32.6 3.0 18 53-70 29-46 (217)
481 2bbw_A Adenylate kinase 4, AK4 36.7 20 0.00067 32.9 3.0 18 53-70 27-44 (246)
482 3nh6_A ATP-binding cassette SU 36.7 16 0.00054 35.2 2.4 19 52-70 79-97 (306)
483 1uf9_A TT1252 protein; P-loop, 36.6 19 0.00064 31.6 2.8 19 55-73 10-28 (203)
484 2qr3_A Two-component system re 36.6 1.5E+02 0.0052 23.2 9.0 44 158-207 47-94 (140)
485 2jaq_A Deoxyguanosine kinase; 36.5 20 0.00069 31.3 3.0 15 56-70 3-17 (205)
486 2l82_A Designed protein OR32; 36.4 1.6E+02 0.0053 23.2 10.0 68 243-311 62-132 (162)
487 2f1r_A Molybdopterin-guanine d 36.3 14 0.00047 32.2 1.7 16 55-70 4-19 (171)
488 1m7g_A Adenylylsulfate kinase; 36.0 21 0.0007 31.8 3.0 30 40-70 13-42 (211)
489 2yvu_A Probable adenylyl-sulfa 36.0 19 0.00064 31.3 2.6 19 53-71 13-31 (186)
490 2pze_A Cystic fibrosis transme 35.9 15 0.0005 33.7 1.9 19 52-70 33-51 (229)
491 3qks_A DNA double-strand break 35.8 17 0.00059 32.4 2.4 16 55-70 25-40 (203)
492 3bs4_A Uncharacterized protein 35.6 33 0.0011 32.1 4.3 51 53-104 21-74 (260)
493 2px0_A Flagellar biosynthesis 35.6 19 0.00065 34.4 2.8 18 53-70 105-122 (296)
494 2pcj_A ABC transporter, lipopr 35.5 14 0.00047 33.7 1.7 18 52-69 29-46 (224)
495 3be4_A Adenylate kinase; malar 35.3 21 0.00072 32.0 2.9 19 53-71 5-23 (217)
496 2j6p_A SB(V)-AS(V) reductase; 35.2 44 0.0015 28.1 4.8 50 246-295 56-113 (152)
497 1zu4_A FTSY; GTPase, signal re 35.0 24 0.00081 34.1 3.4 30 55-84 107-139 (320)
498 2fwr_A DNA repair protein RAD2 34.7 23 0.0008 35.9 3.5 61 258-331 133-197 (472)
499 1g6h_A High-affinity branched- 34.7 15 0.00052 34.2 1.9 19 52-70 32-50 (257)
500 1wik_A Thioredoxin-like protei 34.7 1.6E+02 0.0054 22.8 8.2 55 259-313 15-75 (109)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.5e-74 Score=623.15 Aligned_cols=407 Identities=37% Similarity=0.668 Sum_probs=370.8
Q ss_pred CCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHH
Q 009843 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l 98 (524)
++++.+.+...|++.|||.+|||+|.++|+++++|+|+++.||||+|||+||++|++...+++|||+|+++|+.||++.|
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l 104 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVL 104 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCC
Q 009843 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (524)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f 177 (524)
+++|+.+..+++.....+.......+.......+++|+|||.+.++ .++..+........+++||||||||+++|||+|
T Consensus 105 ~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~df 184 (591)
T 2v1x_A 105 KQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDF 184 (591)
T ss_dssp HHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTC
T ss_pred HhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccccc
Confidence 9999999999999998888777777754455689999999998764 566666666667789999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCc-hhhHHHHHHHHHHh-
Q 009843 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKA- 255 (524)
Q Consensus 178 r~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~-~~~~~~~l~~~l~~- 255 (524)
|+.|..|..++..+|++|+++||||+++.+..++...+++..+..+..+++++|+.|.+..... ...++..|.++++.
T Consensus 185 r~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~ 264 (591)
T 2v1x_A 185 RPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 264 (591)
T ss_dssp CGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999887643 34567788888864
Q ss_pred cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC
Q 009843 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~ 335 (524)
..+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|..++++|++|+++|||||++++||||+|+|++|||+++
T Consensus 265 ~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 265 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhhHHHHHHHHHhhh-ccChhHHHHhcCcCC
Q 009843 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLD-VAGKRFSRVLGNRYW 414 (524)
Q Consensus 336 p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~crr~~~l~~~~~ 414 (524)
|+|++.|+||+|||||+|++|.|+++|++.|...+..++.. .....+.+..|+.||+ ...|||..+++
T Consensus 345 p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~Crr~~ll~---- 413 (591)
T 2v1x_A 345 SKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVM-------ENVGQQKLYEMVSYCQNISKCRRVLMAQ---- 413 (591)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTT-------STTHHHHHHHHHHHHTCSSSCHHHHHHH----
T ss_pred CCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhh-------hhhhHHHHHHHHHHHhcccccHHHHHHH----
Confidence 99999999999999999999999999999999988887743 2345678899999999 58999999999
Q ss_pred CCCCCCCcccchhccccccccccCCcCCCCcccCCCCCCCCCh
Q 009843 415 DVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN 457 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~ 457 (524)
|| ||.+.+..|+++||||..+.
T Consensus 414 -------------------~f--~e~~~~~~c~~~Cd~C~~~~ 435 (591)
T 2v1x_A 414 -------------------HF--DEVWNSEACNKMCDNCCKDS 435 (591)
T ss_dssp -------------------HH--TCCC---CCCSCBHHHHCCC
T ss_pred -------------------Hc--CCCCCccccCCCCCCCCCCC
Confidence 99 99876678988899998763
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-73 Score=611.21 Aligned_cols=406 Identities=40% Similarity=0.689 Sum_probs=370.5
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~ 94 (524)
..|+.+++++.+...|++.||+.+|||+|.++|+++++|+|+++.||||+|||+||++|++...+++|||+|+++|++||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 009843 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (524)
Q Consensus 95 ~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (524)
++.++.+|+.+..+++.............+..+. .+++|+|||.+.++.+...+ ....+++|||||||++++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l----~~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHL----AHWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHH----TTSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHH----hhCCCCEEEEeCccccCcCC
Confidence 9999999999999999988887777777777665 88999999998877655443 23569999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHH
Q 009843 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (524)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~ 254 (524)
|+||+.|..+..++..+|+.|+++||||+++.+..++...+++.++.++..++.++++.+.+.... ++...+.++++
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887653 56778888888
Q ss_pred hcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC
Q 009843 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (524)
Q Consensus 255 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~ 334 (524)
...+.++||||+|++.++.+++.|.+.|+.+..|||+|+.++|..+++.|++|+++|||||++++||||+|+|++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccChhHHHHhcCcCC
Q 009843 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERWLITVKVLDVAGKRFSRVLGNRYW 414 (524)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~crr~~~l~~~~~ 414 (524)
+|+|+++|+||+|||||+|.+|.|+++|++.|...++.++... ............+..|..||++..|||..+++
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~l~~m~~~~~~~~crr~~l~~---- 387 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK-PQGQLQDIERHKLNAMGAFAEAQTCRRLVLLN---- 387 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTS-CCSHHHHHHHHHHHHHHHHHTCSSCHHHHHHH----
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHHhccccHhhhhHh----
Confidence 9999999999999999999999999999999999999888762 22222345567789999999999999999999
Q ss_pred CCCCCCCcccchhccccccccccCCcCCCCcccCCCCCCCCCh
Q 009843 415 DVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN 457 (524)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~~~ 457 (524)
|| ||..+ .+|+ .||||..+.
T Consensus 388 -------------------~f--~e~~~-~~c~-~cd~c~~~~ 407 (523)
T 1oyw_A 388 -------------------YF--GEGRQ-EPCG-NCDICLDPP 407 (523)
T ss_dssp -------------------HT--TCCCC-SCCS-CBHHHHSCC
T ss_pred -------------------hc--CCCCC-CCCC-CCCCCCCCc
Confidence 99 99864 5798 599998754
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-51 Score=430.10 Aligned_cols=343 Identities=19% Similarity=0.274 Sum_probs=274.3
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----------CCeE
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----------~~~~ 81 (524)
+...|+++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++.||||+|||++|++|++.. ++++
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CcCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 34557778999999999998 89999999999999999999999999999999999999998743 4589
Q ss_pred EEeCcHHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhc
Q 009843 82 LVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (524)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~ 155 (524)
||++|+++|+.|+.+.+++++ +....+.++........ .+.. ..+++++||+.+ ..+.. ...
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ivv~Tp~~l------~~~l~~~~~~ 200 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVVIATPGRL------LDFVDRTFIT 200 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEEEECHHHH------HHHHHTTSCC
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEEEEChHHH------HHHHHhCCcc
Confidence 999999999999999998853 55666666655543322 2222 267777776644 22222 223
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccC---CCCcc
Q 009843 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNL 232 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~---~~~~l 232 (524)
...++++|+||||++.+|| |++.+..+.......++.++++||||+++.+...... .+.++..+.... ...++
T Consensus 201 l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE--FLKNYVFVAIGIVGGACSDV 276 (434)
T ss_dssp CTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEEEESSTTCCCTTE
T ss_pred cccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH--hccCCEEEEecccccccccc
Confidence 5668999999999999988 8877776654433356789999999999987664433 344565544322 22344
Q ss_pred eEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009843 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (524)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~Vl 312 (524)
...+.... ...+...|.+++.....+ +||||++++.++.+++.|.+.|+.+..+||++++.+|..++++|++|+.+||
T Consensus 277 ~~~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 354 (434)
T 2db3_A 277 KQTIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354 (434)
T ss_dssp EEEEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEE
T ss_pred ceEEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 44443332 246778888888876654 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc-cHHHHHHHH
Q 009843 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFIL 374 (524)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d~~~~~~l~ 374 (524)
|||+++++|||+|++++||+|++|.+.+.|+||+||+||.|+.|.+++|++++ |...+..+.
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~ 417 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLV 417 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHH
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999955 444444333
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.2e-50 Score=438.92 Aligned_cols=345 Identities=18% Similarity=0.247 Sum_probs=268.3
Q ss_pred ChhHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHhcC----------CCeEEEeCcHH
Q 009843 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (524)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l--~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lvl~P~~ 88 (524)
.+++.+.+.|++ +||..|+|+|.++|+.++ .++|+++.||||+|||++|++|++.. ..++|||+|++
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 478899999987 899999999999999999 78899999999999999999999753 34899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCC
Q 009843 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGL 158 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~ 158 (524)
+|+.|+.+.++++ + +......+....... ...+.... .+|+++||+.+.. .+.. ......
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~--~~IlV~Tp~~l~~-----~l~~~~~~~~~~ 175 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLR--PNIVIATPGRLID-----VLEKYSNKFFRF 175 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHC--CSEEEECHHHHHH-----HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcCC--CCEEEECHHHHHH-----HHHhcccccccc
Confidence 9999999998874 2 234444444433322 22232222 5788888876532 1211 223566
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-----CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCC----
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFN---- 228 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-----~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~---- 228 (524)
+++|||||||++++|| |++.+..+........ ++++++||||+++.+...+...+.......+.. ...
T Consensus 176 ~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp CCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred CCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 9999999999999999 9999988877665433 678999999999987665444333222222221 111
Q ss_pred CCcceEEEEeeCchh----hHHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHH
Q 009843 229 RPNLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSV 300 (524)
Q Consensus 229 ~~~l~~~v~~~~~~~----~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~ 300 (524)
...+...+....... ..+..+...+.. ..+.++||||+|++.|+.+++.|.+. |+.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 223333333333222 233444444444 45678999999999999999999886 8999999999999999999
Q ss_pred HHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 301 ~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
++.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+||+||+|+.|.|++++.+.|...++.+.+...
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877543
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=414.95 Aligned_cols=348 Identities=20% Similarity=0.290 Sum_probs=275.2
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC----------------
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------------- 77 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---------------- 77 (524)
...|+++++++.+.+.|.. +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++..
T Consensus 14 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 3457778999999999998 89999999999999999999999999999999999999998753
Q ss_pred --------CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChh
Q 009843 78 --------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145 (524)
Q Consensus 78 --------~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~ 145 (524)
.+++||++|+++|+.|+.+.++++ ++....+.+......... .+.. ..+++++||+.+..
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~Tp~~l~~-- 164 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVATPGRLVD-- 164 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEECHHHHHH--
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEChHHHHH--
Confidence 157999999999999999998874 566666666665543322 2222 36777777765422
Q ss_pred hHHHHHh-hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CCCEEEEeccCChhHHHHHHHHhCCCCCeE
Q 009843 146 FMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (524)
Q Consensus 146 ~~~~l~~-~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~ 222 (524)
.+.. ......+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+.......+ .++..
T Consensus 165 ---~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~ 237 (417)
T 2i4i_A 165 ---MMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEYIF 237 (417)
T ss_dssp ---HHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred ---HHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCCEE
Confidence 1111 1235568999999999999987 7777665533211211 46799999999988766554444 34443
Q ss_pred Eec---cCCCCcceEEEEeeCchhhHHHHHHHHHHhc-CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHH
Q 009843 223 LKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (524)
Q Consensus 223 ~~~---~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (524)
+.. ....+++...+.... ...+...+.++++.. .+.++||||++++.++.+++.|.+.|+.+..+||+++.++|.
T Consensus 238 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 238 LAVGRVGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp EEEC----CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred EEeCCCCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 332 233455555554433 256777888888876 467899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 299 ~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
.+++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.|++|+++.|...+..+.+...
T Consensus 317 ~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp HHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877777765543
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.3e-50 Score=434.16 Aligned_cols=344 Identities=18% Similarity=0.249 Sum_probs=266.1
Q ss_pred hhHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHhcC----------CCeEEEeCcHHH
Q 009843 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l--~g~d~lv~apTGsGKTl~~~lp~l~~----------~~~~lvl~P~~~ 89 (524)
+++.+.+.|.+ +||..|+|+|.++|+.++ .++|+++.||||+|||++|++|++.. ..++|||+|+++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 77888999987 899999999999999999 67899999999999999999999753 248999999999
Q ss_pred HHHHHHHHHHHc-----C---CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCc
Q 009843 90 LMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (524)
Q Consensus 90 L~~q~~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (524)
|+.|+.+.++++ + .......+....... ...+.... .+|+++||+.+.. .+.+ ......+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~--~~Iiv~Tp~~l~~-----~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLR--PNIVIATPGRLID-----VLEKYSNKFFRFV 227 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHC--CSEEEECHHHHHH-----HHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcCC--CCEEEECcHHHHH-----HHHhccccccccc
Confidence 999999998873 2 334444444443322 22222222 5788888775522 1111 2235669
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhC-----CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cC----CC
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SF----NR 229 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-----~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~----~~ 229 (524)
++|||||||++++|| |++.+..+....... +++|+++||||+++.+...+...+.......+.. .. ..
T Consensus 228 ~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 228 DYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp CEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred eEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccc
Confidence 999999999999998 999998877665442 3678999999999987664444333222222221 11 12
Q ss_pred CcceEEEEeeCchhh----HHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHHH
Q 009843 230 PNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVL 301 (524)
Q Consensus 230 ~~l~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~ 301 (524)
..+...+........ .+..+...+.. ..+.++||||+|++.|+.+++.|.+. |+.+..+||+|++.+|..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 306 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 233333333332222 23344444443 45678999999999999999999886 89999999999999999999
Q ss_pred HHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 302 ~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
+.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+|||||.|++|.|++++.+.|...++.+.+...
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876543
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.8e-48 Score=405.92 Aligned_cols=348 Identities=19% Similarity=0.317 Sum_probs=279.0
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeC
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~ 85 (524)
.....|.++++++.+.+.|++ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .++++||++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 112 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred cCCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc
Confidence 334567778999999999998 8999999999999999999999999999999999999999985 367899999
Q ss_pred cHHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCc
Q 009843 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (524)
Q Consensus 86 P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (524)
|+++|+.|+.+.+++++ +.+....+......... .+..+ .+++++||+.+ ..+.. ......+
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~ivv~Tp~~l------~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR---KLDYG---QHVVAGTPGRV------FDMIRRRSLRTRAI 180 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHH---HHHHC---CSEEEECHHHH------HHHHHTTSSCCTTC
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH---HhhcC---CCEEEcCHHHH------HHHHHhCCccHhhe
Confidence 99999999999998854 55555555555443322 22222 46766666644 22221 2334568
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCCcceEE
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~ 235 (524)
+++|+||||++.+++ |+..+ ..+...++ +.+++++|||+++.+...+.. .+.+|..+.. ....+++...
T Consensus 181 ~~vViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 253 (410)
T 2j0s_A 181 KMLVLDEADEMLNKG--FKEQI---YDVYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQF 253 (410)
T ss_dssp CEEEEETHHHHTSTT--THHHH---HHHHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEE
T ss_pred eEEEEccHHHHHhhh--hHHHH---HHHHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEE
Confidence 999999999999887 55444 44445554 678999999999876543222 2345554432 2333455554
Q ss_pred EEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009843 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (524)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT 315 (524)
+........+...+.++++.....++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||
T Consensus 254 ~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 333 (410)
T 2j0s_A 254 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST 333 (410)
T ss_dssp EEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC
T ss_pred EEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 44444445678888888888777899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~ 379 (524)
+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++|+++.|...++.+.+....
T Consensus 334 ~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 334 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp GGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred ChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999888877665443
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.2e-48 Score=402.53 Aligned_cols=346 Identities=20% Similarity=0.272 Sum_probs=278.6
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeCcH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~ 87 (524)
...|+++++++.+.+.|.+ .||..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .+.++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 3468889999999999998 8999999999999999999999999999999999999999875 35589999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009843 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (524)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (524)
++|+.|+.+.++++ ++......+......... .+ ....+++++||+.+.. .+. .......++++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~Ivv~T~~~l~~-----~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL---NETVHILVGTPGRVLD-----LASRKVADLSDCSLF 167 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh---cCCCCEEEEchHHHHH-----HHHhCCcccccCCEE
Confidence 99999999999875 566666666555433211 11 2236788888775421 121 12335568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe--ccCCCCcceEEEEee
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK 239 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~--~~~~~~~l~~~v~~~ 239 (524)
|+||||++.+.+ |+.. +..+...++ ..++++||||+++.+...+...+. .+..+. .....+++...+...
T Consensus 168 IiDEaH~~~~~~--~~~~---~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 168 IMDEADKMLSRD--FKTI---IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEESHHHHSSHH--HHHH---HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEEC
T ss_pred EEeCchHhhhhc--hHHH---HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEe
Confidence 999999987643 4433 444455554 678999999999988777666554 333332 233344554433332
Q ss_pred CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009843 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (524)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~ 319 (524)
. ...+...+..+++...++++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||++++
T Consensus 241 ~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 E-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp C-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred c-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 2 246777888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC
Q 009843 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~ 379 (524)
+|+|+|++++||+++.|.|...|+||+||+||.|++|.|+++++++|...+..+.+....
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999888888776543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-47 Score=395.93 Aligned_cols=344 Identities=15% Similarity=0.230 Sum_probs=274.0
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
..|+++++++.+.+.|++ +|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++||++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 457778999999999998 89999999999999999999999999999999999999998854 55899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009843 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (524)
+|+.|+.+.++++ ++.+..+.+.......... +..+. .+++++||+.+.. .+. .......++++
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~--~~iiv~T~~~l~~-----~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPGRILA-----LARNKSLNLKHIKHF 156 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSC--CSEEEECHHHHHH-----HHHTTSSCCTTCSEE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCC--CCEEEECHHHHHH-----HHHcCCccccccCEE
Confidence 9999999999886 6777777777665443322 22332 5677777775432 111 12235568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc----CCCCcceEEEE
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVR 237 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~----~~~~~l~~~v~ 237 (524)
|+||||++.+| ++|+..+. .+....+ +.+++++|||+++.+...+...+. .|..+... ....++...+.
T Consensus 157 ViDEaH~~~~~-~~~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 230 (391)
T 1xti_A 157 ILDECDKMLEQ-LDMRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQQYYV 230 (391)
T ss_dssp EECSHHHHTSS-HHHHHHHH---HHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCEEEEE
T ss_pred EEeCHHHHhhc-cchHHHHH---HHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccceEEEE
Confidence 99999999876 23554443 4444454 778999999999987776555543 44433321 12233433333
Q ss_pred eeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
.. ....+...+.++++...++++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||++
T Consensus 231 ~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 231 KL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp EC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred Ec-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 22 23567788888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH-HHHHHHHHh
Q 009843 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILSK 376 (524)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~-~~~~~l~~~ 376 (524)
+++|+|+|++++||+++.|.|...|+||+||+||.|++|.|++++++.+. ..+..+.+.
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 369 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987754 444554443
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-48 Score=406.31 Aligned_cols=349 Identities=19% Similarity=0.276 Sum_probs=264.5
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~~ 88 (524)
..|..+++.+.+.+.|++ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++. ..+++||++|++
T Consensus 40 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 456668899999999998 8999999999999999999999999999999999999999875 467899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEE
Q 009843 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (524)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iV 163 (524)
+|+.|+.+.++++ +.......+....... ...+.... .+++++||+.+.. .+. .......+++||
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~iiv~T~~~l~~-----~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEA--PHIIVGTPGRVFD-----MLNRRYLSPKYIKMFV 188 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTC--CSEEEECHHHHHH-----HHHHTSSCSTTCCEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCC--CCEEEECHHHHHH-----HHHcCCcccccCcEEE
Confidence 9999999999885 3455554444433322 22233232 6777777765422 222 223355689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCCcceEEEEee
Q 009843 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 239 (524)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~v~~~ 239 (524)
+||||++.+|+ |.. .+..+...+ ++.++++||||+++.+...+... +.++..+.. ....+++.......
T Consensus 189 iDEah~~~~~~--~~~---~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (414)
T 3eiq_A 189 LDEADEMLSRG--FKD---QIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF--MRDPIRILVKKEELTLEGIRQFYINV 261 (414)
T ss_dssp ECSHHHHHHTT--THH---HHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTT--CSSCEEECCCCCCCCTTSCCEEEEEC
T ss_pred EECHHHhhccC--cHH---HHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHH--cCCCEEEEecCCccCCCCceEEEEEe
Confidence 99999999887 443 344445555 47889999999998876644332 344544432 22333444444444
Q ss_pred CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 009843 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (524)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~ 319 (524)
.....+...+.++++....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||++++
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 262 EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 44456888899999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccCCC
Q 009843 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (524)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~~~ 381 (524)
+|||+|++++||+++.|.|...|+||+||+||.|++|.|++++++.|...++.+.+......
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSI 403 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCC
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999988888776654443
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3e-47 Score=393.59 Aligned_cols=340 Identities=17% Similarity=0.259 Sum_probs=267.7
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeC
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~ 85 (524)
...|+++++++.+.+.|.+ +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++.. ++++||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4567888999999999998 89999999999999999998 899999999999999999998753 56899999
Q ss_pred cHHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCcc
Q 009843 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (524)
Q Consensus 86 P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~ 160 (524)
|+++|+.|+.+.+++++ +......+..... ......+++++||+.+.. .+. .......++
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~-----~~~~~~~~~~~~~ 147 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLD-----LMRRKLMQLQKIK 147 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHH-----HHHTTCBCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHHHH-----HHHcCCcccccCC
Confidence 99999999999999854 3333333222110 011135677777765421 121 223355689
Q ss_pred EEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe---ccCCCCcceEE
Q 009843 161 LVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYE 235 (524)
Q Consensus 161 ~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~---~~~~~~~l~~~ 235 (524)
+||+||||++.+ ++ |+..+. .+...++ +.+++++|||+++.+.......+. .+..+. .....+++...
T Consensus 148 ~iIiDEah~~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 220 (395)
T 3pey_A 148 IFVLDEADNMLDQQG--LGDQCI---RVKRFLPKDTQLVLFSATFADAVRQYAKKIVP--NANTLELQTNEVNVDAIKQL 220 (395)
T ss_dssp EEEEETHHHHHHSTT--HHHHHH---HHHHTSCTTCEEEEEESCCCHHHHHHHHHHSC--SCEEECCCGGGCSCTTEEEE
T ss_pred EEEEEChhhhcCccc--cHHHHH---HHHHhCCCCcEEEEEEecCCHHHHHHHHHhCC--CCeEEEccccccccccccEE
Confidence 999999999987 44 554443 3444444 678999999999887665555443 333332 23334455555
Q ss_pred EEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 009843 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (524)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT 315 (524)
+........+...+..+++...++++||||++++.++.+++.|++.|+.+..+||+++.++|..+++.|++|+.+|||||
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 221 YMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300 (395)
T ss_dssp EEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred EEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 55554556677778888877778899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCC------CHHHHHHHHhhcCCCCCCceEEEEeccccHH-HHHHHHHh
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILSK 376 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~-~~~~l~~~ 376 (524)
+++++|+|+|++++||++++|. |...|+||+||+||.|+.|.|++++...+.. .+..+.+.
T Consensus 301 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~ 368 (395)
T 3pey_A 301 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 368 (395)
T ss_dssp GGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHH
T ss_pred ChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999876544 44444443
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2e-47 Score=397.52 Aligned_cols=345 Identities=19% Similarity=0.253 Sum_probs=271.6
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcC------CCeEEE
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lv 83 (524)
.....|+++++++.+.+.|++ +|+..|+|+|.++++.++++ +++++.||||+|||++|++|++.. .+++||
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~li 100 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 100 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEE
Confidence 445567888999999999998 89999999999999999987 899999999999999999998743 448999
Q ss_pred eCcHHHHHHHHHHHHHHcC-----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h--hhc
Q 009843 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHS 155 (524)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~--~~~ 155 (524)
++|+++|+.|+.+.+++++ +......+...... ......+++++||+.+ ..+. . ...
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T~~~l------~~~~~~~~~~~ 165 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTV------LDWCSKLKFID 165 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEECHHHH------HHHHTTSCSSC
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEECchHH------HHHHHhcCCcC
Confidence 9999999999998888753 33333333322110 0112356777776654 2222 1 222
Q ss_pred cCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCC
Q 009843 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRP 230 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~ 230 (524)
...+++|||||||++.+ ++ |...+. .+...++ +.+++++|||+++.+.......+ .++..+.. ....+
T Consensus 166 ~~~~~~iViDEah~~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 238 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLD 238 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTT--THHHHH---HHHHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSCT
T ss_pred hhhCcEEEEeCHHHHhhcCC--cHHHHH---HHHhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeecccccccc
Confidence 35689999999999976 44 444433 3444444 67899999999998877555544 44444432 22344
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009843 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (524)
Q Consensus 231 ~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (524)
++............+...+.+++....+.++||||++++.++.+++.|.+.|+.+..+||+|+.++|..+++.|++|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 318 (412)
T 3fht_A 239 TIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318 (412)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc
Confidence 55555555555567888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccccCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEecccc-HHHHHHHHHhccC
Q 009843 311 VVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQS 379 (524)
Q Consensus 311 VlVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d-~~~~~~l~~~~~~ 379 (524)
|||||+++++|||+|++++||++++| .+...|+||+||+||.|+.|.|++++++.+ ...+..+.+....
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 99999999999999999999999999 578999999999999999999999998775 5666666655443
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.9e-47 Score=386.11 Aligned_cols=341 Identities=18% Similarity=0.296 Sum_probs=272.3
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHH
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIA 89 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~ 89 (524)
.|+++++++.+.+.|++ +|+..|+|+|.++++.++++ +++++.+|||+|||++|++|++.. +.++||++|+++
T Consensus 7 ~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 46678899999999998 89999999999999999988 699999999999999999998753 668999999999
Q ss_pred HHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEE
Q 009843 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAI 164 (524)
Q Consensus 90 L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iVi 164 (524)
|+.|+.+.+++. ++......+.......... +. ..+++++||+.+.. .+.. ......++++|+
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~----~~~iiv~T~~~l~~-----~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LK----NANIVVGTPGRILD-----HINRGTLNLKNVKYFIL 153 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HH----TCSEEEECHHHHHH-----HHHTTCSCTTSCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cC----CCCEEEecHHHHHH-----HHHcCCcccccCCEEEE
Confidence 999999999884 4555556555544332221 11 25677777775421 1211 123456899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchh
Q 009843 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (524)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~ 243 (524)
||||++.+|+ |... +..+.... ++.+++++|||+++.....+...++ ++..+.... ..++....... ...
T Consensus 154 DEah~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~~ 224 (367)
T 1hv8_A 154 DEADEMLNMG--FIKD---VEKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKI-NANIEQSYVEV-NEN 224 (367)
T ss_dssp ETHHHHHTTT--THHH---HHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCS-SSSSEEEEEEC-CGG
T ss_pred eCchHhhhhc--hHHH---HHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecC-CCCceEEEEEe-ChH
Confidence 9999999887 5544 34444444 4778999999999987776655543 333333322 23443333322 235
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccccc
Q 009843 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (524)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD 323 (524)
.+...+.++++ ..+.++||||++++.++.+++.|++.|+.+..+||+++.++|..+++.|++|+.+|||||+++++|+|
T Consensus 225 ~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 303 (367)
T 1hv8_A 225 ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGID 303 (367)
T ss_dssp GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCC
T ss_pred HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCC
Confidence 67777877776 45668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC
Q 009843 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~ 379 (524)
+|++++||+++.|.|...|+||+||+||.|++|.|++++++.|...+..+.+....
T Consensus 304 ~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 304 VNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp CSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred cccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999988888766543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6e-47 Score=383.02 Aligned_cols=325 Identities=18% Similarity=0.240 Sum_probs=258.3
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc-
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK- 101 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~- 101 (524)
++.+.+.|++ +|+..|+|+|.++++.+++++++++.+|||+|||++|++|++..++++||++|+++|+.|+.+.++++
T Consensus 2 ~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 5788899987 89999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEeccccccccCCCC
Q 009843 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDF 177 (524)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~f 177 (524)
++....+.+.......... +. ..+++++||+.+.. .+. .......++++|+||||++.+|+ |
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~----~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iViDEah~~~~~~--~ 146 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINR---VR----NADIVVATPGRLLD-----LWSKGVIDLSSFEIVIIDEADLMFEMG--F 146 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHH---HT----TCSEEEECHHHHHH-----HHHTTSCCGGGCSEEEEESHHHHHHTT--C
T ss_pred hhcCCcEEEEECCcchHHHHhh---cC----CCCEEEECHHHHHH-----HHHcCCcchhhCcEEEEEChHHhhccc--c
Confidence 4666666666555433221 21 25677777775432 111 12234558999999999999987 4
Q ss_pred HHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhc
Q 009843 178 RPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256 (524)
Q Consensus 178 r~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~ 256 (524)
.. .+..+....+ ..+++++|||+++.....+...+ .++..+......+++...+..... ........++..
T Consensus 147 ~~---~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 218 (337)
T 2z0m_A 147 ID---DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFI--TNYEEIEACIGLANVEHKFVHVKD---DWRSKVQALREN 218 (337)
T ss_dssp HH---HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS--CSCEEEECSGGGGGEEEEEEECSS---SSHHHHHHHHTC
T ss_pred HH---HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc--CCceeeecccccCCceEEEEEeCh---HHHHHHHHHHhC
Confidence 43 3445555665 45577899999998877666654 344445444455555554443322 112233556677
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p 336 (524)
.+.++||||++++.++.+++.|. .+..+||+++..+|..++++|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 78899999999999999998886 58899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHH
Q 009843 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (524)
Q Consensus 337 ~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~ 375 (524)
.|...|+||+||+||.|++|.|++|+. .|...++.+.+
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 999999999999999999999999999 77666665543
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-48 Score=403.31 Aligned_cols=344 Identities=19% Similarity=0.265 Sum_probs=146.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~P 86 (524)
....|+++++++.+.+.|.. +|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++++||++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 34568888999999999998 8999999999999999999999999999999999999999875 3569999999
Q ss_pred HHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccE
Q 009843 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~ 161 (524)
+++|+.|+.+.++++ ++......+............ ..+++++||+.+.. .+. .......+++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFD-----NIQRRRFRTDKIKM 165 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHH-----HHHTTSSCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHH-----HHHhCCcchhhCcE
Confidence 999999999998874 566777776666544333222 25687777775422 111 1223456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEecc---CCCCcceEEEE
Q 009843 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVR 237 (524)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l~~~v~ 237 (524)
+|+||||++.+|+ |+..+.. +...+ ++.++++||||+++.+...+...+ ..|..+... ...+++.....
T Consensus 166 vIiDEah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T 1fuu_A 166 FILDEADEMLSSG--FKEQIYQ---IFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRILVKKDELTLEGIKQFYV 238 (394)
T ss_dssp EEEETHHHHHHTT--CHHHHHH---HHHHSCTTCEEEEECSSCCHHHHHHHHHHC--CSCEEEEECC-------------
T ss_pred EEEEChHHhhCCC--cHHHHHH---HHHhCCCCceEEEEEEecCHHHHHHHHHhc--CCCeEEEecCccccCCCceEEEE
Confidence 9999999998877 6655544 34444 467899999999998766555544 344433221 12223322222
Q ss_pred eeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
.......+...+.++++...+.++||||++++.++.+++.|++.|+.+..+||+++.++|..+++.|++|+.+|||||++
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 318 (394)
T 1fuu_A 239 NVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh
Confidence 22222335566666676666778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
+++|+|+|++++||+++.|.|...|+||+||+||.|++|.|+++++++|...+..+.+.
T Consensus 319 ~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 377 (394)
T 1fuu_A 319 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 377 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777766554
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.5e-47 Score=395.51 Aligned_cols=329 Identities=16% Similarity=0.212 Sum_probs=256.5
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHH
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
.+++.+.+++.||+ +|+|+|.++++.+++|+|+++.||||+|||++|++|++. .++++||++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 46678889998999 799999999999999999999999999999999999876 68899999999999999999999
Q ss_pred H---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC--
Q 009843 100 E---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (524)
Q Consensus 100 ~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-- 174 (524)
. .++.+..+.+......+......+..+. .+++++||+.+. .+........+++|||||||++.+||
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp~~l~------~~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVS------KNREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEHHHHH------HCHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECHHHHH------HHHHHhccccccEEEEeChHhhhhccch
Confidence 9 4778999999888877666666776664 567777776543 22223445679999999999999887
Q ss_pred -------CCCHHH-HHHHHHHHH------hC---CCCCEEEEeccC-ChhHHHHHHHH-hCCCCCeEEeccCCCCcceEE
Q 009843 175 -------HDFRPS-YRKLSSLRN------YL---PDVPILALTATA-APKVQKDVMES-LCLQNPLVLKSSFNRPNLFYE 235 (524)
Q Consensus 175 -------~~fr~~-~~~l~~l~~------~~---~~~~ii~lSAT~-~~~~~~~i~~~-l~l~~~~~~~~~~~~~~l~~~ 235 (524)
++|++. +..+..... .+ ++.+++++|||+ +..+...+... +.... .......+++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS---SCCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc---Cccccccccchhe
Confidence 778877 444433332 11 577899999994 44443333332 22111 1112233445444
Q ss_pred EEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009843 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (524)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VlVa 314 (524)
+... ++...+.++++.. +.++||||++++.++.+++.|.+.|+.+. .+||+ +|+ ++.|++|+++||||
T Consensus 235 ~~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 4333 3445566667663 47899999999999999999999999998 99984 444 99999999999999
Q ss_pred ----cccccccccCCC-ccEEEEeCCC--CCHHHHHHHHhhcCCCC----CCceEEEEeccccHHHHHHHHHh
Q 009843 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 315 ----T~a~~~GiD~p~-v~~VI~~~~p--~s~~~y~Q~~GRagR~G----~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
|+++++|||+|+ |++||++++| .|...|+||+||+||.| ..|.+++++ +|...+..+.+.
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~ 374 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTR 374 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHH
Confidence 999999999999 9999999999 99999999999999998 479999999 555555555443
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.2e-47 Score=401.32 Aligned_cols=340 Identities=20% Similarity=0.262 Sum_probs=135.2
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcC------CCeEEEe
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl 84 (524)
....|..+++++.+.+.|.. +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. .+++||+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 44567778999999999998 89999999999999999987 899999999999999999999854 3389999
Q ss_pred CcHHHHHHHHHHHHHHcC-----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h--hhcc
Q 009843 85 SPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHSR 156 (524)
Q Consensus 85 ~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~--~~~~ 156 (524)
+|+++|+.|+.+.+++++ +............. ......+++++||+.+ ..+. + ....
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Ivv~Tp~~l------~~~l~~~~~~~~ 233 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTV------LDWCSKLKFIDP 233 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHH------HHHHTTSCCCCG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEEEECchHH------HHHHHhcCCcCc
Confidence 999999999988877642 33333332221100 0111246766666544 2222 1 2233
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCC---CCc
Q 009843 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPN 231 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~ 231 (524)
..+++|||||||++.+ ++ |...+ ..+...++ +.+++++|||+++.+....... +.++..+..... ...
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHH---HHHHTTSCTTSEEEEEESCCCHHHHHHHHHH--SSSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHH---HHHHhhCCccceEEEEeCCCCHHHHHHHHHH--cCCCeEEeccccccCcCC
Confidence 5689999999999986 44 44333 33444444 6889999999999877654444 345544433221 222
Q ss_pred ceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009843 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (524)
Q Consensus 232 l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (524)
+...+........+...+..++......++||||++++.++.+++.|...|+.+..+||+++..+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222223456667777777667778999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccccCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEecccc-HHHHHHHHH
Q 009843 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILS 375 (524)
Q Consensus 312 lVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d-~~~~~~l~~ 375 (524)
||||+++++|||+|++++||++++| .+...|+||+|||||.|++|.|++++++.+ ...+..+.+
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~ 457 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 457 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHH
Confidence 9999999999999999999999999 467899999999999999999999998775 444444443
No 18
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.8e-45 Score=414.71 Aligned_cols=383 Identities=17% Similarity=0.213 Sum_probs=270.3
Q ss_pred ChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHH
Q 009843 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIG 97 (524)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~ 97 (524)
....++...+...|+|+ |+++|.++|+++++|+|+++.||||+|||++|++|+.. .++++||++|+++|+.|+++.
T Consensus 23 ~~f~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 23 ENFDELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp TTHHHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred cchhhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 33344444555668885 89999999999999999999999999999998877653 478899999999999999999
Q ss_pred HHHc--CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCC
Q 009843 98 LKEK--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (524)
Q Consensus 98 l~~~--gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (524)
+++. ++.+..+++... .....+++++||+.+...-. ........+++|||||||++.+|++
T Consensus 102 l~~~~~~~~v~~l~G~~~-------------~~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~lvViDEaH~l~d~~~ 164 (997)
T 4a4z_A 102 FKETFDDVNIGLITGDVQ-------------INPDANCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYVNDQDR 164 (997)
T ss_dssp HHTTC--CCEEEECSSCE-------------ECTTSSEEEEEHHHHHHHHH----HTCSGGGGEEEEEECCTTCCCTTCT
T ss_pred HHHHcCCCeEEEEeCCCc-------------cCCCCCEEEECHHHHHHHHH----hCchhhcCCCEEEEECcccccccch
Confidence 9985 567777776543 12347888888887632110 1122345689999999999999985
Q ss_pred CCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCC---CCCeEEeccCCCCcceEEEEee------------
Q 009843 176 DFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYK------------ 239 (524)
Q Consensus 176 ~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l---~~~~~~~~~~~~~~l~~~v~~~------------ 239 (524)
.. .+ ..+...+| ++++++||||+++.. ++..+++. ....++.......++.+.+...
T Consensus 165 g~--~~---e~ii~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~ 237 (997)
T 4a4z_A 165 GV--VW---EEVIIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSE 237 (997)
T ss_dssp TC--CH---HHHHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCC
T ss_pred HH--HH---HHHHHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhh
Confidence 53 23 33444555 789999999987653 34555442 2222333333332332221100
Q ss_pred --------------------------------------------------------------------------------
Q 009843 240 -------------------------------------------------------------------------------- 239 (524)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (524)
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 317 (997)
T 4a4z_A 238 FLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQD 317 (997)
T ss_dssp BCHHHHHHHHHHHC-----------------------------------------------------------------C
T ss_pred hhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred CchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCC------------------------------------
Q 009843 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------------------------------ 283 (524)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~------------------------------------ 283 (524)
......+..+.+.+......++||||+|++.|+.++..|.+.|+
T Consensus 318 ~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 397 (997)
T 4a4z_A 318 GPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 397 (997)
T ss_dssp CCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 00123456777888887778999999999999999999987665
Q ss_pred ---ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCC---------CHHHHHHHHhhcCC
Q 009843 284 ---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGR 351 (524)
Q Consensus 284 ---~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR 351 (524)
.+..|||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||++++|+ |..+|+||+|||||
T Consensus 398 l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 398 LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 4799999999999999999999999999999999999999999 7788877777 99999999999999
Q ss_pred CC--CCceEEEEe--ccccHHHHHHHHHhccCCCCc-c-----------hhhHHHHHHHHHhh------hccChhHHHHh
Q 009843 352 DQ--LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQ-S-----------FSTRERWLITVKVL------DVAGKRFSRVL 409 (524)
Q Consensus 352 ~G--~~~~~i~~~--~~~d~~~~~~l~~~~~~~~~~-~-----------~~~~~~l~~~~~~~------~~~~crr~~~l 409 (524)
.| ..|.|++++ ...+...++.++......... . ......++.|+.++ +...|++...+
T Consensus 477 ~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l 556 (997)
T 4a4z_A 477 RGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQI 556 (997)
T ss_dssp TTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99 467788887 344666777776544332111 0 01112235566555 45679999999
Q ss_pred cCcCCCCCCCCCcccchhccccccccccCCcCCCCcccCCCCCCCC
Q 009843 410 GNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKH 455 (524)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~~~~~~c~~~Cd~c~~ 455 (524)
. +| +++.....|. .||+|..
T Consensus 557 ~-----------------------~l--~~~~~~~~~~-~c~~c~~ 576 (997)
T 4a4z_A 557 K-----------------------VL--QEELQTIEYK-SCEICDN 576 (997)
T ss_dssp H-----------------------HH--HHHHHC------------
T ss_pred H-----------------------HH--HHHHHHhhhh-ccccccc
Confidence 9 88 8876555677 5999964
No 19
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.7e-46 Score=415.75 Aligned_cols=364 Identities=16% Similarity=0.200 Sum_probs=227.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC-----C----CeEEEeCcHHHHHHHH-HHHHHHcC---Cc
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~-----~----~~~lvl~P~~~L~~q~-~~~l~~~g---i~ 104 (524)
+|+|+|.++++.+++|+++++.||||+|||++|++|++.. . +++|||+|+++|+.|+ .+++++++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 6999999999999999999999999999999999998752 2 8999999999999999 99999864 67
Q ss_pred eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHH--HHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 009843 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (524)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~--l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (524)
+..+++......... .+.. ..+++++||+.+...-.... .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~---~~~~---~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFP---EVVK---SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHH---HHHH---SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHH---hhhc---CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 777776643322111 1111 37888888886642110000 11122345689999999999843 333433322
Q ss_pred HHHH--HHHhC---------CCCCEEEEeccCChh-------HHHHHHHHhCCCCC-eEEe---------ccCCCCcceE
Q 009843 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDVMESLCLQNP-LVLK---------SSFNRPNLFY 234 (524)
Q Consensus 183 ~l~~--l~~~~---------~~~~ii~lSAT~~~~-------~~~~i~~~l~l~~~-~~~~---------~~~~~~~l~~ 234 (524)
.+.. +.... +..++++||||+... ....+.......++ .+.. ....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2111 11111 667899999999873 33333332221111 1111 1122333333
Q ss_pred EEEeeCc-------------------------------------------------------------------------
Q 009843 235 EVRYKDL------------------------------------------------------------------------- 241 (524)
Q Consensus 235 ~v~~~~~------------------------------------------------------------------------- 241 (524)
.......
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221100
Q ss_pred -----------------------------------------------------------hhhHHHHHHHHHH----hcC-
Q 009843 242 -----------------------------------------------------------LDDAYADLCSVLK----ANG- 257 (524)
Q Consensus 242 -----------------------------------------------------------~~~~~~~l~~~l~----~~~- 257 (524)
...++..|.++|. ..+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0001111222232 223
Q ss_pred CccEEEEeCccccHHHHHHHHHhC------CCceEEEcCC--------CCHHHHHHHHHHHhcCCCcEEEEccccccccc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD 323 (524)
+.++||||++++.++.+++.|.+. |+.+..+||+ |+..+|..++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHH--------HHHH----HhccCCCC---cchhhH
Q 009843 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM--------EFIL----SKNQSKNS---QSFSTR 388 (524)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~--------~~l~----~~~~~~~~---~~~~~~ 388 (524)
+|++++|||||+|+|++.|+||+|||||.| +.+++++..++.... ..++ ........ ......
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 557 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILE 557 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999999999988876 555555544432111 1111 11111000 011122
Q ss_pred HHHHHHHHhhhccChhHHHHhc
Q 009843 389 ERWLITVKVLDVAGKRFSRVLG 410 (524)
Q Consensus 389 ~~l~~~~~~~~~~~crr~~~l~ 410 (524)
..+..+..+++...|++...+.
T Consensus 558 ~q~~~~~~~~~~~~~~~~~~~~ 579 (699)
T 4gl2_A 558 LQMQSIMEKKMKTKRNIAKHYK 579 (699)
T ss_dssp HHHHHHHHCCSCCC--------
T ss_pred HHHHHHHHHHHHHhhhHHhhhh
Confidence 2356788888889999999999
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.9e-44 Score=397.42 Aligned_cols=329 Identities=20% Similarity=0.273 Sum_probs=203.2
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHH
Q 009843 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
..|.. +|+..||++|.++++.+++|+|+++.+|||+|||++|++|++.. ++++||++|+++|+.|+.+.++
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34444 89999999999999999999999999999999999999998742 2799999999999999999999
Q ss_pred Hc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-h-ccCCccEEEEecccccccc
Q 009843 100 EK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-H-SRGLLNLVAIDEAHCISSW 173 (524)
Q Consensus 100 ~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~-~~~~l~~iViDEaH~i~~~ 173 (524)
++ ++.+..+.+......... .+.. ..+++++||+.+.. .+... . ....+++|||||||++..+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~---~~~~---~~~Iiv~Tp~~L~~-----~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVE---QIVE---NNDIIILTPQILVN-----NLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHH---HHHH---TCSEEEECHHHHHH-----HHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHhccCCceEEEEeCCccccccHH---Hhcc---CCCEEEECHHHHHH-----HHhcCcccccccccEEEEeCCCcccCc
Confidence 86 677777776653322111 1111 26788888876522 22211 1 3456899999999999865
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCEEEEeccCC-------hhHHHHHHHHhCCCCCeEEeccC----------CCCc
Q 009843 174 GHDFRPSYRKLSSLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSSF----------NRPN 231 (524)
Q Consensus 174 g~~fr~~~~~l~~l~~~-----~~~~~ii~lSAT~~-------~~~~~~i~~~l~l~~~~~~~~~~----------~~~~ 231 (524)
. .++..... .+... .+..++++||||+. ......+...+...+...+.... ..|.
T Consensus 152 ~-~~~~i~~~--~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~ 228 (696)
T 2ykg_A 152 H-PYNMIMFN--YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 228 (696)
T ss_dssp C-HHHHHHHH--HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCE
T ss_pred c-cHHHHHHH--HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCc
Confidence 3 22222211 12222 24677999999998 44445554443211111110000 0000
Q ss_pred ceE---------------------------------------------------------------EEEe----------
Q 009843 232 LFY---------------------------------------------------------------EVRY---------- 238 (524)
Q Consensus 232 l~~---------------------------------------------------------------~v~~---------- 238 (524)
..+ ....
T Consensus 229 ~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 229 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred eeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 000 0000
Q ss_pred ------------------------------------------------------------------eCchhhHHHHHHHH
Q 009843 239 ------------------------------------------------------------------KDLLDDAYADLCSV 252 (524)
Q Consensus 239 ------------------------------------------------------------------~~~~~~~~~~l~~~ 252 (524)
......++..|.++
T Consensus 309 l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 309 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 00013456667777
Q ss_pred HHhc----CCccEEEEeCccccHHHHHHHHHhCC----CceEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEc
Q 009843 253 LKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVAT 315 (524)
Q Consensus 253 l~~~----~~~~~IIf~~s~~~~e~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~-g~~~VlVaT 315 (524)
++.. .+.++||||++++.++.+++.|.+.| +.+..+ ||+|+.++|..++++|++ |+++|||||
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 7654 56789999999999999999999988 888888 569999999999999998 999999999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHH
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l 373 (524)
+++++|||+|++++|||||+|.|++.|+||+|| ||. ++|.|+++++.++......+
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999 998 78999999998887544433
No 21
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-45 Score=392.07 Aligned_cols=343 Identities=17% Similarity=0.239 Sum_probs=220.2
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
+.+.++.+.+.+.+.+ .|+..|+++|.+++++++++ +++++.||||+|||++|++|++.. .+++||++|++
T Consensus 121 ~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3445667778888887 69999999999999999998 999999999999999999988753 45899999999
Q ss_pred HHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEecc
Q 009843 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEA 167 (524)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEa 167 (524)
+|+.|+.+.+++++................ . ......+++++||+.+.. .+. .......+++||||||
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~Ivv~T~~~l~~-----~l~~~~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVP---K---GAKIDAQIVIGTPGTVMD-----LMKRRQLDARDIKVFVLDEA 268 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC----------------CCCCSEEEECHHHHHH-----HHHTTCSCCTTCCEEEECCH
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccc---c---cccCCCCEEEECHHHHHH-----HHHcCCccccCCCEEEEech
Confidence 999999999998643211111111000000 0 011136777777775522 111 1223556999999999
Q ss_pred ccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEec---cCCCCcceEEEEeeCch
Q 009843 168 HCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLL 242 (524)
Q Consensus 168 H~i~~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~v~~~~~~ 242 (524)
|++++ ++ |...+. .+...++ +.++++||||+++.+.......+ .++..+.. ....+++...+......
T Consensus 269 H~~~~~~~--~~~~~~---~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 269 DNMLDQQG--LGDQSM---RIKHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp HHHTTC----CHHHHH---HHHHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC--C
T ss_pred hhhcccCC--cHHHHH---HHHHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEECCch
Confidence 99987 44 554444 3444454 78899999999987766444433 33333322 22233333333333334
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccc
Q 009843 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (524)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~Gi 322 (524)
..+...+.++++...++++||||++++.++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 56777788888777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEeccc-cHHHHHHHHHhcc
Q 009843 323 DRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQ 378 (524)
Q Consensus 323 D~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d~~~~~~l~~~~~ 378 (524)
|+|++++||+++.| .|+..|+||+||+||.|++|.|++++.+. +...+..+.+...
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 484 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQ 484 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSC
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHC
Confidence 99999999999999 88999999999999999999999999854 5555555555443
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.1e-41 Score=374.03 Aligned_cols=326 Identities=21% Similarity=0.256 Sum_probs=242.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~ 89 (524)
..|+++++++.+.+.+++ +|+.+|+|+|.++++. +.+++++++.||||+|||+++.++++. .+++++|++|+++
T Consensus 8 ~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 346778899999999988 8999999999999999 788999999999999999999988863 5789999999999
Q ss_pred HHHHHHHHHHH---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEe
Q 009843 90 LMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAID 165 (524)
Q Consensus 90 L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViD 165 (524)
|+.|+.+.++. +|+.+....+....... .+ ...+++++|||.+.. .+.. ......+++||||
T Consensus 87 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 87 LTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKLDS-----LWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp HHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHHHH-----HHHHCCGGGGGEEEEEEC
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHHHH-----HHhCChhHhhccCEEEEe
Confidence 99999999854 46777776665433221 01 136788888876522 1111 1124568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcce------------
Q 009843 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF------------ 233 (524)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~------------ 233 (524)
|||++.+++ +.+.+. .+...+++.++++||||+++. .++..+++. ..+..+...-.+.
T Consensus 153 E~H~l~~~~--~~~~l~---~i~~~~~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~ 222 (715)
T 2va8_A 153 ELHYLNDPE--RGPVVE---SVTIRAKRRNLLALSATISNY--KQIAKWLGA---EPVATNWRPVPLIEGVIYPERKKKE 222 (715)
T ss_dssp SGGGGGCTT--THHHHH---HHHHHHHTSEEEEEESCCTTH--HHHHHHHTC---EEEECCCCSSCEEEEEEEECSSTTE
T ss_pred chhhcCCcc--cchHHH---HHHHhcccCcEEEEcCCCCCH--HHHHHHhCC---CccCCCCCCCCceEEEEecCCcccc
Confidence 999998765 443333 334444488999999999752 566677652 1222221111111
Q ss_pred EEEEeeC-------chhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCC------------------------
Q 009843 234 YEVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG------------------------ 282 (524)
Q Consensus 234 ~~v~~~~-------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g------------------------ 282 (524)
+.+...+ .....+..+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (715)
T 2va8_A 223 YNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGG 300 (715)
T ss_dssp EEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSC
T ss_pred eeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcc
Confidence 1111111 01344455555443 45789999999999999999998642
Q ss_pred ------------CceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE----eC-------CCCCH
Q 009843 283 ------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKSM 339 (524)
Q Consensus 283 ------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~----~~-------~p~s~ 339 (524)
..+..+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+ .|.|.
T Consensus 301 ~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~ 380 (715)
T 2va8_A 301 SDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPI 380 (715)
T ss_dssp HHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CH
T ss_pred ccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCH
Confidence 24899999999999999999999999999999999999999999999999 98 89999
Q ss_pred HHHHHHHhhcCCCCC--CceEEEEeccccH
Q 009843 340 EAFYQESGRAGRDQL--PSKSLLYYGMDDR 367 (524)
Q Consensus 340 ~~y~Q~~GRagR~G~--~~~~i~~~~~~d~ 367 (524)
.+|.||+|||||.|. +|.|+++++..+.
T Consensus 381 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 381 MEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999999999984 7999999987763
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-42 Score=392.18 Aligned_cols=336 Identities=17% Similarity=0.147 Sum_probs=242.1
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMEN 93 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q 93 (524)
+...++.+.+...+...|+| .|+++|.++|++++.|++++++||||+|||++|++|++.. +++++|++|+++|+.|
T Consensus 164 ~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q 242 (1108)
T 3l9o_A 164 YDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQ 242 (1108)
T ss_dssp CCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred cccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 34445555555555554555 6999999999999999999999999999999999998754 8899999999999999
Q ss_pred HHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEeccccccc
Q 009843 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 94 ~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEaH~i~~ 172 (524)
+.+.+++....+..+.+... .....+++++||+.+.. .+.. ......+++|||||||++.+
T Consensus 243 ~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~-----~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 243 KYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHH-----HHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHH-----HHHcCccccccCCEEEEhhhhhccc
Confidence 99999996657766665543 12347788888875532 1111 11133589999999999998
Q ss_pred cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHH-HHHHHHhCCCCCe-EEeccCCCCcceEEEEe-----------
Q 009843 173 WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQ-KDVMESLCLQNPL-VLKSSFNRPNLFYEVRY----------- 238 (524)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~-~~i~~~l~l~~~~-~~~~~~~~~~l~~~v~~----------- 238 (524)
|+ |...+. .+...++ ++++++||||+++... ..+..... ..+. ++........+...+..
T Consensus 305 ~~--rg~~~e---~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~-~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 305 KE--RGVVWE---ETIILLPDKVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp HH--HHHHHH---HHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHT-CSCEEEEEECCCSSCEEEEEEETTSSCCEEEEE
T ss_pred cc--hHHHHH---HHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecCCCcccceEEEeecCCcceeeeec
Confidence 87 444443 3444455 7889999999876421 22222222 2233 33322222222211110
Q ss_pred -eCc------------------------------------------hhhHHHHHHHHHHhcCCccEEEEeCccccHHHHH
Q 009843 239 -KDL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (524)
Q Consensus 239 -~~~------------------------------------------~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~ 275 (524)
... ....+..+...+...+..++||||++++.|+.++
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHH
Confidence 000 0233444555566667779999999999999999
Q ss_pred HHHHhCCCc---------------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 276 AYLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 276 ~~L~~~g~~---------------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
..|...++. +..+||+|++.+|..+++.|.+|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 988653322 78999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCC--------CCCHHHHHHHHhhcCCCC--CCceEEEEeccc-cHHHHHHHHHhc
Q 009843 317 AFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~--------p~s~~~y~Q~~GRagR~G--~~~~~i~~~~~~-d~~~~~~l~~~~ 377 (524)
++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|++++++. +...+..++...
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 9999999999999997665 348889999999999999 688999999876 555666666543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.9e-41 Score=376.61 Aligned_cols=328 Identities=22% Similarity=0.243 Sum_probs=244.3
Q ss_pred CCCCC--hhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHHHHH
Q 009843 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALM 91 (524)
Q Consensus 17 ~~~~~--~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~ 91 (524)
|++++ +++.+.+.+++ +||.+|+|+|.++++.+.+++++++.||||+|||++|.+|++ ..+++++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 44456 78888999987 899999999999999999999999999999999999998887 3578999999999999
Q ss_pred HHHHHHHHH---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-hccCCccEEEEecc
Q 009843 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEA 167 (524)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViDEa 167 (524)
.|+.+.++. .|+.+....+....... .....+++++|||.+.. .+... .....+++||||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~-----~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS-----LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH-----HHHTTCSGGGGCCEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH-----HHHcChhHHhhcCEEEEeee
Confidence 999999854 46777776665432211 01136788888876521 11211 11456899999999
Q ss_pred ccccccCCCCHHHHHH-HHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE------eeC
Q 009843 168 HCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (524)
Q Consensus 168 H~i~~~g~~fr~~~~~-l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~------~~~ 240 (524)
|++.+|+ +.+.+.. +..++...++.++++||||+++ ..++..+++. ..+..+...-.+...+. ...
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9998876 3344433 3344444568999999999985 3566777652 22322222222211111 000
Q ss_pred ------chhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC------------------------------CCc
Q 009843 241 ------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GIS 284 (524)
Q Consensus 241 ------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------------------g~~ 284 (524)
........+.+.++ .++++||||++++.++.++..|.+. +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 00114555555554 4568999999999999999988753 135
Q ss_pred eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE----eC---CCCCHHHHHHHHhhcCCCC--CC
Q 009843 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--LP 355 (524)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~----~~---~p~s~~~y~Q~~GRagR~G--~~ 355 (524)
+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999 66 7899999999999999998 47
Q ss_pred ceEEEEeccccHH
Q 009843 356 SKSLLYYGMDDRR 368 (524)
Q Consensus 356 ~~~i~~~~~~d~~ 368 (524)
|.|+++++..+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 8999999988843
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.9e-41 Score=384.25 Aligned_cols=291 Identities=16% Similarity=0.205 Sum_probs=220.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
+.+.+.++..+|| +|+|+|.++++.+++|+|++++||||+|||++|++|++. .++++||++|+++|+.|+.+.+++
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 4455667777899 699999999999999999999999999999998888765 588999999999999999999999
Q ss_pred ---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccC---
Q 009843 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--- 174 (524)
Q Consensus 101 ---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--- 174 (524)
.++.+..+++.....++......+..+. .+|+++||+.+ ..+........+++|||||||++.+++
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~Tp~rL------~~~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFV------SKNREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEEEHHHH------HHSHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEECHHHH------HHHHHhhcccCcCEEEEeCCCccccccccc
Confidence 4678888888887766666666676664 56776666644 233223455679999999999988643
Q ss_pred ------CCCHHH-HHHHHHHHH------hC---CCCCEEEEeccCCh-hHHHHHHH-HhCCCCCeEEeccCCCCcceEEE
Q 009843 175 ------HDFRPS-YRKLSSLRN------YL---PDVPILALTATAAP-KVQKDVME-SLCLQNPLVLKSSFNRPNLFYEV 236 (524)
Q Consensus 175 ------~~fr~~-~~~l~~l~~------~~---~~~~ii~lSAT~~~-~~~~~i~~-~l~l~~~~~~~~~~~~~~l~~~v 236 (524)
.+|.+. +..+..... .+ ++.++++||||+.+ .+...+.. .+.+ .+.......+++...+
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEE
Confidence 336665 444433322 01 46789999999544 33322222 2221 1112233455565555
Q ss_pred EeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE-
Q 009843 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA- 314 (524)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VlVa- 314 (524)
... ++...|.++++..+ .++||||++++.++.+++.|...|+.+. .+|| +|.+ +++|++|+++||||
T Consensus 293 ~~~----~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 293 ISS----RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp ESC----CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEE
T ss_pred Eec----CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEe
Confidence 443 34455666676643 6899999999999999999999999998 9999 2555 99999999999999
Q ss_pred ---cccccccccCCC-ccEEEEeCCCC
Q 009843 315 ---TVAFGMGIDRKD-VRLVCHFNIPK 337 (524)
Q Consensus 315 ---T~a~~~GiD~p~-v~~VI~~~~p~ 337 (524)
|+++++|||+|+ |++|||||+|.
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.1e-41 Score=375.83 Aligned_cols=325 Identities=21% Similarity=0.269 Sum_probs=245.3
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHH
Q 009843 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (524)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~ 91 (524)
|.++++++.+.+.+++ +|+..|+++|.++++. +.+++++++.+|||+|||++|.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 5667899999999998 8999999999999998 889999999999999999999988873 478999999999999
Q ss_pred HHHHHHHHH---cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEecc
Q 009843 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (524)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEa 167 (524)
.|+.+++++ +|+.+..+.+....... .+ ...+++++|||.+.. .+.. ......+++||||||
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDE-----WL----GKYDIIIATAEKFDS-----LLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCG-----GG----GGCSEEEECHHHHHH-----HHHHTCTTGGGEEEEEEETG
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCcccc-----cc----CCCCEEEECHHHHHH-----HHHcChhhhhcCCEEEEECC
Confidence 999999864 47787777765432211 01 136788888876522 1111 122456899999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE------eeC
Q 009843 168 HCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (524)
Q Consensus 168 H~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~------~~~ 240 (524)
|++.+++ +.+.+.. +...++ +.++++||||+++. .++..+++. ..+..+.....+...+. ...
T Consensus 148 H~l~~~~--r~~~~~~---ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 148 HLIGSRD--RGATLEV---ILAHMLGKAQIIGLSATIGNP--EELAEWLNA---ELIVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp GGGGCTT--THHHHHH---HHHHHBTTBEEEEEECCCSCH--HHHHHHTTE---EEEECCCCSSEEEEEEEETTEEEETT
T ss_pred cccCCCc--ccHHHHH---HHHHhhcCCeEEEEcCCcCCH--HHHHHHhCC---cccCCCCCCCcceEEEEeCCeeeccc
Confidence 9998766 3333333 333332 78899999999763 566677642 12222221111111111 100
Q ss_pred ----chhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC------------------C---------------C
Q 009843 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G---------------I 283 (524)
Q Consensus 241 ----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------g---------------~ 283 (524)
........+.+.++ .++++||||++++.++.++..|.+. + .
T Consensus 218 ~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 218 GSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp SCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 01234445555554 3578999999999999999998753 1 2
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE----eC----CCCCHHHHHHHHhhcCCCC--
Q 009843 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ-- 353 (524)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~----~~----~p~s~~~y~Q~~GRagR~G-- 353 (524)
.+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 4899999999999999999999999999999999999999999999998 66 5899999999999999998
Q ss_pred CCceEEEEeccccHH
Q 009843 354 LPSKSLLYYGMDDRR 368 (524)
Q Consensus 354 ~~~~~i~~~~~~d~~ 368 (524)
.+|.|+++++..+..
T Consensus 376 ~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPR 390 (720)
T ss_dssp SEEEEEEECSSSCHH
T ss_pred CCceEEEEecCccHH
Confidence 478899999988843
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.4e-41 Score=361.27 Aligned_cols=317 Identities=19% Similarity=0.262 Sum_probs=182.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----CC
Q 009843 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GI 103 (524)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~----gi 103 (524)
.-+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ ++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 347999999999999999999999999999999999998754 789999999999999999999885 78
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCCCHHHH
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPSY 181 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (524)
.+..+.+......... .+.. ..+++++||+.+.. .+.. .. ....+++|||||||++.+|+. +....
T Consensus 85 ~~~~~~g~~~~~~~~~---~~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~ 152 (556)
T 4a2p_A 85 SVQGISGENFSNVSVE---KVIE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 152 (556)
T ss_dssp CEEECCCC-----CHH---HHHH---HCSEEEECHHHHHH-----HHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHH
T ss_pred eEEEEeCCCCcchhHH---HhhC---CCCEEEECHHHHHH-----HHHhCcccccccCCEEEEECCcccCCcch-HHHHH
Confidence 8888777664433211 1111 25677777775421 2221 12 455689999999999998773 22211
Q ss_pred HHHHHHHHh----CCCCCEEEEeccCChh----------HHHHHHHHhCCCCCeEEe---------ccCCCCcceEEEEe
Q 009843 182 RKLSSLRNY----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK---------SSFNRPNLFYEVRY 238 (524)
Q Consensus 182 ~~l~~l~~~----~~~~~ii~lSAT~~~~----------~~~~i~~~l~l~~~~~~~---------~~~~~~~l~~~v~~ 238 (524)
. ..+... .+..++++||||+... ....+...+... .+.. ....++...+....
T Consensus 153 ~--~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (556)
T 4a2p_A 153 T--RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLVK 228 (556)
T ss_dssp H--HHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHTCCCCEEEEECC
T ss_pred H--HHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe--EecchhcchHHHHhcCCCCceEEEEcC
Confidence 1 112221 3567899999999642 111222333211 1110 01112222111110
Q ss_pred e-------------------------------------------------------------------------------
Q 009843 239 K------------------------------------------------------------------------------- 239 (524)
Q Consensus 239 ~------------------------------------------------------------------------------- 239 (524)
.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (556)
T 4a2p_A 229 RRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 308 (556)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------------------------------------CchhhHHHHHHHHHHh----c
Q 009843 240 -----------------------------------------------------------DLLDDAYADLCSVLKA----N 256 (524)
Q Consensus 240 -----------------------------------------------------------~~~~~~~~~l~~~l~~----~ 256 (524)
.....++..|.+++.. .
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~ 388 (556)
T 4a2p_A 309 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 388 (556)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCC
Confidence 0002244455555543 4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccccccc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VlVaT~a~~~GiD 323 (524)
.+.++||||++++.++.+++.|.+. |.....+||+|+.++|..++++|++ |+++|||||+++++|||
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiD 468 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCC
Confidence 6789999999999999999999876 5566778899999999999999999 99999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHH
Q 009843 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (524)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~ 370 (524)
+|++++|||||+|+|+..|+||+|| ||. ++|.++++++..+....
T Consensus 469 ip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp ----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 9999999999999999999999999 999 88999999998876543
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=376.25 Aligned_cols=321 Identities=18% Similarity=0.198 Sum_probs=239.4
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009843 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (524)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (524)
...|+|. |+++|.++++++.+|+++++.+|||+|||++|.++++. .++++||++|+++|++|+.+.+++....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 3458886 99999999999999999999999999999999888764 5789999999999999999999985446666
Q ss_pred eccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 009843 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (524)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (524)
+.+.... .+..+++++|||++.. .+. .......+++|||||||++.+|++. ..+..
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L~~-----~L~~~~~~l~~l~lVViDEaH~l~d~~rg-----~~~e~ 215 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEVHYMRDKERG-----VVWEE 215 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHHHH-----HHHHTCTTGGGEEEEEEETGGGGGCTTTH-----HHHHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHHHH-----HHHcCcchhhcCCEEEEechhhhcccchh-----HHHHH
Confidence 6554321 1236788888876532 111 1233456899999999999988743 23344
Q ss_pred HHHhCC-CCCEEEEeccCChhHHHHHHHHhC--CCCCe-EEeccCCCCcceEEEEeeC----------------------
Q 009843 187 LRNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNRPNLFYEVRYKD---------------------- 240 (524)
Q Consensus 187 l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~--l~~~~-~~~~~~~~~~l~~~v~~~~---------------------- 240 (524)
+...+| ++++++||||+++.. ++..++. ...+. ++........+...+....
T Consensus 216 il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 216 TIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 455555 688999999987642 2233322 12232 2222222222221111100
Q ss_pred -------------------------ch-------hhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCc----
Q 009843 241 -------------------------LL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS---- 284 (524)
Q Consensus 241 -------------------------~~-------~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~---- 284 (524)
.. ...+..+...+...+..++||||+|++.|+.+++.|...++.
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 00 123344556666666678999999999999999999775442
Q ss_pred -----------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccE
Q 009843 285 -----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (524)
Q Consensus 285 -----------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~ 329 (524)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 789999999999999999999999999999999999999999999
Q ss_pred EEE----eCC----CCCHHHHHHHHhhcCCCCC--CceEEEEeccc-cHHHHHHHHHhc
Q 009843 330 VCH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (524)
Q Consensus 330 VI~----~~~----p~s~~~y~Q~~GRagR~G~--~~~~i~~~~~~-d~~~~~~l~~~~ 377 (524)
||+ ||. |.|+.+|+||+|||||.|. .|.|++++++. +...+..++...
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 999 998 8999999999999999997 59999999876 666677776543
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=9.7e-41 Score=379.94 Aligned_cols=318 Identities=19% Similarity=0.261 Sum_probs=190.0
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc---
Q 009843 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (524)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~--- 101 (524)
.+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999865 788999999999999999999885
Q ss_pred -CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCCCH
Q 009843 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFR 178 (524)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~fr 178 (524)
++.+..+.+.......... +.. ..+++++||+.+.. .+.. .. ....+++|||||||++...+ .++
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~---~~~---~~~IvI~Tp~~L~~-----~l~~~~~~~l~~~~liViDEaH~~~~~~-~~~ 390 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEK---VIE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNH-PYN 390 (936)
T ss_dssp TTCCEEEECCC-----CCHH---HHH---HCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEEETGGGCSTTC-HHH
T ss_pred cCceEEEEECCcchhhHHHH---hcc---CCCEEEecHHHHHH-----HHHcCccccccCCCEEEEECccccCCCc-cHH
Confidence 7888888776643322111 111 25787777775422 1211 11 34458999999999998754 232
Q ss_pred HHHHHHHHHHHh-----CCCCCEEEEeccCChh----------HHHHHHHHhCCCCCeEEe---------ccCCCCcceE
Q 009843 179 PSYRKLSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK---------SSFNRPNLFY 234 (524)
Q Consensus 179 ~~~~~l~~l~~~-----~~~~~ii~lSAT~~~~----------~~~~i~~~l~l~~~~~~~---------~~~~~~~l~~ 234 (524)
... ..+... .+..++++||||+... ....+...+... .+.. ....++...+
T Consensus 391 ~i~---~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 391 VLM---TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp HHH---HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEEE
T ss_pred HHH---HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcceE
Confidence 222 222222 4567899999999531 112222233211 1110 0011222111
Q ss_pred EEEee---------------------------------------C-----------------------------------
Q 009843 235 EVRYK---------------------------------------D----------------------------------- 240 (524)
Q Consensus 235 ~v~~~---------------------------------------~----------------------------------- 240 (524)
..... .
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~ 545 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 11000 0
Q ss_pred ----------------------------------------------------------------chhhHHHHHHHHHHh-
Q 009843 241 ----------------------------------------------------------------LLDDAYADLCSVLKA- 255 (524)
Q Consensus 241 ----------------------------------------------------------------~~~~~~~~l~~~l~~- 255 (524)
....++..|.++|..
T Consensus 546 ~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (936)
T 4a2w_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (936)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 001244445556654
Q ss_pred ---cCCccEEEEeCccccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccc
Q 009843 256 ---NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFG 319 (524)
Q Consensus 256 ---~~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VlVaT~a~~ 319 (524)
..+.++||||++++.++.+++.|.+. |..+..+||+|+..+|..++++|++ |+++|||||++++
T Consensus 626 ~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~ 705 (936)
T 4a2w_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (936)
T ss_dssp TTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh
Confidence 35689999999999999999999986 5666778999999999999999999 9999999999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHH
Q 009843 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (524)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~ 369 (524)
+|||+|+|++|||||+|+|+..|+||+|| ||. .+|.++++++..+...
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999 999 7899999998876643
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-39 Score=340.28 Aligned_cols=314 Identities=19% Similarity=0.243 Sum_probs=235.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC----CCeEEEeCcHHHHHHHHHHHHHHc-CC---ceeEec
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~----~~~~lvl~P~~~L~~q~~~~l~~~-gi---~~~~~~ 109 (524)
+|+|+|.++++.++++ ++++.+|||+|||++++++++.. ++++|||+|+++|+.|+.+++++. +. .+..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999999 99999999999999999887653 789999999999999999999985 65 677777
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
+..........+. ..+++++||+.+.. .+. .......+++||+||||++.... .++ ..+..+.
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~-----~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~---~~~~~~~ 151 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIEN-----DLLAGRISLEDVSLIVFDEAHRAVGNY-AYV---FIAREYK 151 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHH-----HHHTTSCCTTSCSEEEEETGGGCSTTC-HHH---HHHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHH-----HHhcCCcchhhceEEEEECCcccCCCC-cHH---HHHHHHH
Confidence 7776655433332 25777777775532 111 12335568999999999997532 122 2223344
Q ss_pred HhCCCCCEEEEeccCCh--hHHHHHHHHhCCCCCeEEecc-------CCCCcceEEEEeeC-------------------
Q 009843 189 NYLPDVPILALTATAAP--KVQKDVMESLCLQNPLVLKSS-------FNRPNLFYEVRYKD------------------- 240 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~--~~~~~i~~~l~l~~~~~~~~~-------~~~~~l~~~v~~~~------------------- 240 (524)
...+..++++||||+.. ....++...+....+...... +......+.....+
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999983 334455555554322211100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009843 241 -------------------------------------------------------------------------------- 240 (524)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (524)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ----------------------------chhhHHHHHHHHHHh----cCCccEEEEeCccccHHHHHHHHHhCCCceEEE
Q 009843 241 ----------------------------LLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (524)
Q Consensus 241 ----------------------------~~~~~~~~l~~~l~~----~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~ 288 (524)
....++..+.++++. ..+.++||||++++.++.+++.|.+.|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 112345556666665 567899999999999999999999999999999
Q ss_pred cC--------CCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEE
Q 009843 289 HA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (524)
Q Consensus 289 h~--------~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~ 360 (524)
|| +++.++|..++++|++|+.+|||||+++++|||+|++++||+++.|+|+..|.||+||+||.|+ |.++.
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EeccccHHH
Q 009843 361 YYGMDDRRR 369 (524)
Q Consensus 361 ~~~~~d~~~ 369 (524)
++.+++.+.
T Consensus 471 l~~~~t~ee 479 (494)
T 1wp9_A 471 LMAKGTRDE 479 (494)
T ss_dssp EEETTSHHH
T ss_pred EEecCCHHH
Confidence 999887653
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=358.95 Aligned_cols=317 Identities=20% Similarity=0.253 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----CCce
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~----gi~~ 105 (524)
.|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999998754 789999999999999999999885 7888
Q ss_pred eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-h-ccCCccEEEEeccccccccCCCCHHHHHH
Q 009843 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-H-SRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (524)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~-~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (524)
..+.+......... .+.. ..+++++||+.+.. .+... . ....+++|||||||++.+++ .++....
T Consensus 84 ~~~~g~~~~~~~~~---~~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~- 150 (555)
T 3tbk_A 84 ASISGATSDSVSVQ---HIIE---DNDIIILTPQILVN-----NLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMF- 150 (555)
T ss_dssp EEECTTTGGGSCHH---HHHH---HCSEEEECHHHHHH-----HHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHH-
T ss_pred EEEcCCCcchhhHH---HHhc---CCCEEEECHHHHHH-----HHhcCcccccccCCEEEEECccccCCcc-hHHHHHH-
Confidence 88777664332211 1111 25677777775422 22211 1 34558999999999998765 2322221
Q ss_pred HHHHHHhC-----CCCCEEEEeccCChhH-------HH---HHHHHhCCCCCeEEe---------ccCCCCcceEEEEee
Q 009843 184 LSSLRNYL-----PDVPILALTATAAPKV-------QK---DVMESLCLQNPLVLK---------SSFNRPNLFYEVRYK 239 (524)
Q Consensus 184 l~~l~~~~-----~~~~ii~lSAT~~~~~-------~~---~i~~~l~l~~~~~~~---------~~~~~~~l~~~v~~~ 239 (524)
..+.... +..++++||||+.... .. .+...++. +.+.. ....++...+.....
T Consensus 151 -~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (555)
T 3tbk_A 151 -RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKVAS 227 (555)
T ss_dssp -HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEECCC
T ss_pred -HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEecC
Confidence 1122221 4578999999996532 12 22233321 11111 111222222211110
Q ss_pred C-------------------------------------------------------------------------------
Q 009843 240 D------------------------------------------------------------------------------- 240 (524)
Q Consensus 240 ~------------------------------------------------------------------------------- 240 (524)
.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (555)
T 3tbk_A 228 RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHL 307 (555)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------------------------------------------------chhhHHHHHHHHHHh----c
Q 009843 241 ------------------------------------------------------------LLDDAYADLCSVLKA----N 256 (524)
Q Consensus 241 ------------------------------------------------------------~~~~~~~~l~~~l~~----~ 256 (524)
....++..+.+++.. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 308 RKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 002244455555543 4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCC------------CceEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccccccc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VlVaT~a~~~GiD 323 (524)
++.++||||++++.++.+++.|...| .....+||+|+.++|..++++|++ |+++|||||+++++|||
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGID 467 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCc
Confidence 56899999999999999999999864 345566779999999999999999 99999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHH
Q 009843 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372 (524)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~ 372 (524)
+|++++|||||+|+|+..|+||+|| ||. ++|.+++++++.+......
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~ 514 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEK 514 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHH
Confidence 9999999999999999999999999 998 8999999999887755443
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.1e-41 Score=369.36 Aligned_cols=316 Identities=20% Similarity=0.190 Sum_probs=240.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHhcC---CCeEEEeCcHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQ 94 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~d~lv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~ 94 (524)
..+...+.+.+|| +|+++|.++++.++++ +++++++|||+|||++|++|++.. +.+++|++|+++|+.|+
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQH 433 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence 3445555555999 8999999999998875 589999999999999999998764 78999999999999999
Q ss_pred HHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009843 95 VIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (524)
Q Consensus 95 ~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (524)
.+.+++. |+.+..+++......+...+..+..+. .+++++||+.+ ........++++||||+|++
T Consensus 434 ~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll---------~~~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 434 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALI---------QEDVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHH---------HHCCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hhhhhccCCceEEecccchh
Confidence 9998874 788999999998888888888888775 77888887644 22344567999999999995
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcceEEEEeeCchhhHHHHH
Q 009843 171 SSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYADL 249 (524)
Q Consensus 171 ~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l~~~v~~~~~~~~~~~~l 249 (524)
|...| ..+....++.++++||||+.+..... ...+..+..++.. ...+..+...+.... ....+
T Consensus 503 ---g~~qr------~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~~~~l 567 (780)
T 1gm5_A 503 ---GVKQR------EALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPMD----RVNEV 567 (780)
T ss_dssp --------------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCSS----THHHH
T ss_pred ---hHHHH------HHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEeccc----hHHHH
Confidence 33222 11223334788999999998876552 2233223333322 223344433222222 22334
Q ss_pred HHHHHh--cCCccEEEEeCcc--------ccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 250 CSVLKA--NGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 250 ~~~l~~--~~~~~~IIf~~s~--------~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
.+.+.. ..+.+++|||++. +.++.+++.|.+ .++.+..+||+|+.++|..++++|++|+++|||||+
T Consensus 568 ~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~ 647 (780)
T 1gm5_A 568 YEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 647 (780)
T ss_dssp HHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS
T ss_pred HHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 444432 3456899999966 457888888988 478899999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEecccc
Q 009843 317 AFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (524)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~~~~i~~~~~~d 366 (524)
++++|||+|++++||+++.|. +...|+||+||+||.|++|.|++++++.+
T Consensus 648 vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 648 VIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp CCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 999999999999999999996 78999999999999999999999998543
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.1e-39 Score=360.92 Aligned_cols=321 Identities=18% Similarity=0.253 Sum_probs=190.0
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc-
Q 009843 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK- 101 (524)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~- 101 (524)
...+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 241 ~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999998754 789999999999999999999885
Q ss_pred ---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCC
Q 009843 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHD 176 (524)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~ 176 (524)
++.+..+.+......... .+.. ..+++++||+.+.. .+.. .. ....+++|||||||++...+ .
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~---~~~~---~~~Ivv~Tp~~l~~-----~l~~~~~~~~~~~~~iViDEaH~~~~~~-~ 388 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVE---KVIE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNH-P 388 (797)
T ss_dssp GGGTCCEEEECCC-----CHH---HHHH---TCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEETTGGGCSTTS-H
T ss_pred ccCCceEEEEeCCcchhhhHH---HhhC---CCCEEEEchHHHHH-----HHHhccccccccCCEEEEECccccCCCc-c
Confidence 888888887765443211 1111 26787777775422 2221 11 34458999999999998743 2
Q ss_pred CHHHHHHHHHHHHh-----CCCCCEEEEeccCChh----------HHHHHHHHhCCCCCeEEe---------ccCCCCcc
Q 009843 177 FRPSYRKLSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK---------SSFNRPNL 232 (524)
Q Consensus 177 fr~~~~~l~~l~~~-----~~~~~ii~lSAT~~~~----------~~~~i~~~l~l~~~~~~~---------~~~~~~~l 232 (524)
++... ..+... .+..++++||||+... ....+...++.. .+.. ....++..
T Consensus 389 ~~~i~---~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~--~i~~~~~~~~~l~~~~~~~~~ 463 (797)
T 4a2q_A 389 YNVLM---TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEI 463 (797)
T ss_dssp HHHHH---HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHSCCCCC
T ss_pred HHHHH---HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc--EEecccccHHHHHHhcCCCce
Confidence 22221 122222 4567899999999631 122222333211 1110 00112221
Q ss_pred eEEEEee---------------------------------------C---------------------------------
Q 009843 233 FYEVRYK---------------------------------------D--------------------------------- 240 (524)
Q Consensus 233 ~~~v~~~---------------------------------------~--------------------------------- 240 (524)
.+..... .
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 464 DVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 1111100 0
Q ss_pred ------------------------------------------------------------------chhhHHHHHHHHHH
Q 009843 241 ------------------------------------------------------------------LLDDAYADLCSVLK 254 (524)
Q Consensus 241 ------------------------------------------------------------------~~~~~~~~l~~~l~ 254 (524)
....++..|.++|.
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~ 623 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILD 623 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHH
Confidence 00124444555554
Q ss_pred h----cCCccEEEEeCccccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccc
Q 009843 255 A----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVA 317 (524)
Q Consensus 255 ~----~~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VlVaT~a 317 (524)
. ..+.++||||++++.++.+++.|++. |..+..+||+|+.++|..++++|++ |+++|||||++
T Consensus 624 ~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~ 703 (797)
T 4a2q_A 624 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703 (797)
T ss_dssp HHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC
T ss_pred HHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc
Confidence 3 56689999999999999999999874 5567788999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHH
Q 009843 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (524)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~ 370 (524)
+++|||+|++++||||+.|+|+..|+||+|| ||. ++|.|+++++..+....
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 9999999999999999999999999999999 999 88999999998876433
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.8e-38 Score=343.53 Aligned_cols=322 Identities=19% Similarity=0.188 Sum_probs=234.5
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH----c
Q 009843 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----K 101 (524)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~----~ 101 (524)
+.++.+|+ .|+|.|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+.. +
T Consensus 75 a~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 75 ASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 33456899 99999999999999998 99999999999999999983 467899999999999998877665 5
Q ss_pred CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccCCC-
Q 009843 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD- 176 (524)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~- 176 (524)
|+.+..+.++.....+...+. .+|+|+||..++-.-+...+ .....+..+.++||||||.++ +.+..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~~--------~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAYA--------ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred CCeEEEEeCCCCHHHHHHhcC--------CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 889888888877655443321 57777777654322111111 112335678999999999986 54421
Q ss_pred ---------CHHHHHHHHHHHHhCC----------CCCEE-----------------EEeccCCh---hHH---------
Q 009843 177 ---------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQ--------- 208 (524)
Q Consensus 177 ---------fr~~~~~l~~l~~~~~----------~~~ii-----------------~lSAT~~~---~~~--------- 208 (524)
-...|..+..+...+| ..+++ ++|||.+. .+.
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~ 303 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAM 303 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTC
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHh
Confidence 0123455555555554 23444 56666432 111
Q ss_pred ------------------------------------------------------------------------------HH
Q 009843 209 ------------------------------------------------------------------------------KD 210 (524)
Q Consensus 209 ------------------------------------------------------------------------------~~ 210 (524)
..
T Consensus 304 ~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e 383 (844)
T 1tf5_A 304 QKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEE 383 (844)
T ss_dssp CBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHH
Confidence 11
Q ss_pred HHHHhCCCCCeEEeccCCCCcceEE---EEeeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCce
Q 009843 211 VMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (524)
Q Consensus 211 i~~~l~l~~~~~~~~~~~~~~l~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~ 285 (524)
+....++. ++..+.++|..... +.+. ....++..|.+.+.. ..+.++||||+|++.++.|++.|...|+++
T Consensus 384 ~~~iY~l~---vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~ 459 (844)
T 1tf5_A 384 FRNIYNMQ---VVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH 459 (844)
T ss_dssp HHHHHCCC---EEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhCCc---eEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 11122111 11123344443321 1222 335778888887764 346789999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCce
Q 009843 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (524)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~ 357 (524)
..+||++.+.+|..+.+.++.| .|+|||+++|+|+|++ ++.+||++++|.|.+.|.||+||+||.|.+|.
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 9999999888887666666555 6999999999999999 78899999999999999999999999999999
Q ss_pred EEEEeccccH
Q 009843 358 SLLYYGMDDR 367 (524)
Q Consensus 358 ~i~~~~~~d~ 367 (524)
+++|++.+|.
T Consensus 538 s~~~vs~eD~ 547 (844)
T 1tf5_A 538 TQFYLSMEDE 547 (844)
T ss_dssp EEEEEETTSS
T ss_pred EEEEecHHHH
Confidence 9999998874
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=8.2e-38 Score=360.89 Aligned_cols=323 Identities=20% Similarity=0.187 Sum_probs=251.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CC--CEEEEcCCCChHHHHHHHHHh---cCCCeEEEeCcHH
Q 009843 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (524)
Q Consensus 18 ~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~----g~--d~lv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~ 88 (524)
..+++.+.....+...|||. ++|+|.++++.++. |+ |+++++|||+|||++++++++ ..+++++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 34566677777888889996 69999999999886 65 899999999999999987764 4578999999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEE
Q 009843 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (524)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (524)
+|++|+.+.+++. ++.+..+++..+..........+..+. .+++++||.++. .......++++||
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll~---------~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLLQ---------SDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHH---------SCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------CCccccccceEEE
Confidence 9999999999863 577888888888877777777787765 778888886542 2234567899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec-cCCCCcceEEEEeeCchh
Q 009843 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLD 243 (524)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~-~~~~~~l~~~v~~~~~~~ 243 (524)
||||++ |... .. .+....+++++++||||+.+...... ..++.++.++.. ...+..+...+.... ..
T Consensus 732 DEaH~~---g~~~---~~---~l~~l~~~~~vl~lSATp~p~~l~~~--~~~~~~~~~i~~~~~~r~~i~~~~~~~~-~~ 799 (1151)
T 2eyq_A 732 DEEHRF---GVRH---KE---RIKAMRANVDILTLTATPIPRTLNMA--MSGMRDLSIIATPPARRLAVKTFVREYD-SM 799 (1151)
T ss_dssp ESGGGS---CHHH---HH---HHHHHHTTSEEEEEESSCCCHHHHHH--HTTTSEEEECCCCCCBCBCEEEEEEECC-HH
T ss_pred echHhc---ChHH---HH---HHHHhcCCCCEEEEcCCCChhhHHHH--HhcCCCceEEecCCCCccccEEEEecCC-HH
Confidence 999994 3221 12 23333457889999999998876533 234444443332 223333433333322 12
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009843 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (524)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~G 321 (524)
.....+...+ ..+++++|||++++.++.+++.|++. +..+..+||+|+..+|+.++++|.+|+++|||||+++++|
T Consensus 800 ~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 800 VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 2233333332 24678999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCC-CCCHHHHHHHHhhcCCCCCCceEEEEecccc
Q 009843 322 IDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (524)
Q Consensus 322 iD~p~v~~VI~~~~-p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d 366 (524)
||+|++++||.++. +.++..|+||+||+||.|+.|.|++++.+.+
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999988 5699999999999999999999999997653
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6.6e-40 Score=376.21 Aligned_cols=325 Identities=16% Similarity=0.214 Sum_probs=239.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHH
Q 009843 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
+.+.+.+.+.+||. | ++|.++++.+++|+|+++.||||+|||+ |++|++. .++++||++||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 44557777789999 9 9999999999999999999999999998 8888875 36899999999999999999998
Q ss_pred Hc----CC----ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 100 ~~----gi----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
++ ++ .+..+.+......+......+.. .+|+++||+.+. .+... .+.+++|||||||++.
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP~~L~------~~l~~--L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLS------KHYRE--LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEHHHHH------HCSTT--SCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcHHHHH------HHHHH--hccCCEEEEeChhhhh
Confidence 74 45 66777777766555444444443 567777776442 22111 4579999999999999
Q ss_pred ccCCCCHHHHHHHHHHH----Hh-CCCCCEEEEeccCChhHHH---HHHH-HhCCCCCeEEeccCCCCcceEEEEeeCch
Q 009843 172 SWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQK---DVME-SLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (524)
Q Consensus 172 ~~g~~fr~~~~~l~~l~----~~-~~~~~ii~lSAT~~~~~~~---~i~~-~l~l~~~~~~~~~~~~~~l~~~v~~~~~~ 242 (524)
+||+++++.+..++... .. .+..+++++|||+++. .. .+.. ..... +.......+++.+.+..
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN---- 260 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec----
Confidence 99877766665443110 11 1257899999999886 21 1121 22111 11112233455544442
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----cccc
Q 009843 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAF 318 (524)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVa----T~a~ 318 (524)
..+...|.++++.. +.++||||++++.|+.+++.|++. +.+..+||++. .++++|++|+++|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee
Confidence 23444566666654 467999999999999999999988 99999999983 6789999999999999 9999
Q ss_pred cccccCCCc-cEEEEeCCC-------------------------------------------------------------
Q 009843 319 GMGIDRKDV-RLVCHFNIP------------------------------------------------------------- 336 (524)
Q Consensus 319 ~~GiD~p~v-~~VI~~~~p------------------------------------------------------------- 336 (524)
++|||+|+| ++|||+++|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCHHHHHHHHhhcCCCCCCc--eEEEEeccccHHHHHHHHHhcc
Q 009843 337 ----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 337 ----------~s~~~y~Q~~GRagR~G~~~--~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
.|..+|+||+||+||.|..| .+++++..+|...+..+.+...
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAK 467 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHh
Confidence 79999999999999988775 4777777777776666665443
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.4e-37 Score=364.43 Aligned_cols=327 Identities=19% Similarity=0.226 Sum_probs=236.0
Q ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHH-----cCC
Q 009843 35 GHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKE-----KGI 103 (524)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g-~d~lv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~-----~gi 103 (524)
+|+.|+|+|.++++.++.+ +++++.||||+|||++|.+|++.. ++++||++|+++|+.|+++.+++ .|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 7899999999999999865 679999999999999999998643 67899999999999999998865 356
Q ss_pred ceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH
Q 009843 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (524)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (524)
.+..+.+......+ . .. ..+++++|||.+.. ....+........++++|+||+|++.+. ..+.+..
T Consensus 1003 ~V~~ltGd~~~~~~--~---~~----~~~IiV~TPEkld~--llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~ 1068 (1724)
T 4f92_B 1003 KVVLLTGETSTDLK--L---LG----KGNIIISTPEKWDI--LSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEV 1068 (1724)
T ss_dssp CEEECCSCHHHHHH--H---HH----HCSEEEECHHHHHH--HHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHH
T ss_pred EEEEEECCCCcchh--h---cC----CCCEEEECHHHHHH--HHhCcccccccceeeEEEeechhhcCCC---CCccHHH
Confidence 66666654332211 1 11 25788888885411 1111111112345899999999999763 3343332
Q ss_pred ----HHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEe-ccCCCCc-ceEEEEeeCc--hhhHH----HHHH
Q 009843 184 ----LSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPN-LFYEVRYKDL--LDDAY----ADLC 250 (524)
Q Consensus 184 ----l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-~~~~~~~-l~~~v~~~~~--~~~~~----~~l~ 250 (524)
+..+.... +++++|+||||.++. .++..+++......+. .+..||. +...+..... ..... ..+.
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~ 1146 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVY 1146 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHH
Confidence 33333334 378899999999763 6788899876544432 2333442 3333222111 11111 1222
Q ss_pred HHHH-hcCCccEEEEeCccccHHHHHHHHHhC----------------------------------CCceEEEcCCCCHH
Q 009843 251 SVLK-ANGDTCAIVYCLERTTCDELSAYLSAG----------------------------------GISCAAYHAGLNDK 295 (524)
Q Consensus 251 ~~l~-~~~~~~~IIf~~s~~~~e~l~~~L~~~----------------------------------g~~~~~~h~~l~~~ 295 (524)
..+. ...+.++||||+|++.|+.++..|... ..++.+|||||+++
T Consensus 1147 ~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~ 1226 (1724)
T 4f92_B 1147 HAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPM 1226 (1724)
T ss_dssp HHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHH
T ss_pred HHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHH
Confidence 3333 345778999999999999988766421 12588999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE----------eCCCCCHHHHHHHHhhcCCCCC--CceEEEEec
Q 009843 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (524)
Q Consensus 296 ~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~----------~~~p~s~~~y~Q~~GRagR~G~--~~~~i~~~~ 363 (524)
+|..+++.|++|.++|||||+++++|||+|.+++||. ...|.+..+|.||+|||||.|. .|.|++++.
T Consensus 1227 ~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1227 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 9999999999999999999999999999999999982 3357799999999999999997 689999999
Q ss_pred cccHHHHHHHHHhc
Q 009843 364 MDDRRRMEFILSKN 377 (524)
Q Consensus 364 ~~d~~~~~~l~~~~ 377 (524)
..+...++.++...
T Consensus 1307 ~~~~~~~~~ll~~~ 1320 (1724)
T 4f92_B 1307 GSKKDFFKKFLYEP 1320 (1724)
T ss_dssp GGGHHHHHHHTTSC
T ss_pred chHHHHHHHHhCCC
Confidence 99888888877543
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.8e-38 Score=338.59 Aligned_cols=301 Identities=13% Similarity=0.074 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCC----ceeEec
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi----~~~~~~ 109 (524)
+|+++|.++++.+++++++++.+|||+|||++|++++.. ..+++|||+|+++|+.|+.+++++++. ....+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988875 345999999999999999999998633 345555
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (524)
+....... .....+++++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 44332211 11247899999987655421 1233589999999999875 23445555
Q ss_pred hC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccC--------CCCcceEEEEeeC-----------ch-------
Q 009843 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--------NRPNLFYEVRYKD-----------LL------- 242 (524)
Q Consensus 190 ~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~--------~~~~l~~~v~~~~-----------~~------- 242 (524)
.+ +..++++||||+++.... +.....+..+.++.... ..+.....+.... ..
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 466799999999665322 11111112222222111 1111111111100 00
Q ss_pred ---hhHHHHHHHHHHhc---CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-
Q 009843 243 ---DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (524)
Q Consensus 243 ---~~~~~~l~~~l~~~---~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT- 315 (524)
..+...+.+++... ++.++|||++ .+.++.+++.|.+.+..+..+||+++..+|+.+++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 11223344555443 5566777776 889999999999998899999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
+++++|+|+|++++||+++.|.|+..|+|++||+||.|+.+.++++|+..
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 99999999999999999999999999999999999999887666666533
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.9e-38 Score=334.18 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=204.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009843 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (524)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~d~-lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (524)
|+.+++|.|+ +|+.+++++++ ++.+|||+|||++|++|++. .+++++|++|+++|+.|+.+.+... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 7889999985 79999999887 88899999999999999864 4679999999999999999988643 222222
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (524)
..... ...+...+.++|+..+ ...+........+++|||||||++ +++ +......+ ..+.
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l-----~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~ 137 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATF-----TTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRV 137 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHH-----HHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHH
T ss_pred ccccc-----------cCCCCceEEEEChHHH-----HHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhh
Confidence 11100 1112234545554432 334444455667999999999987 322 22222122 2233
Q ss_pred hCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccc
Q 009843 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (524)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~ 269 (524)
..++.++++||||+++.+.. +...++.++......|...+ ..+.+++... ++++||||+|++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~-----~~~~~~~~~~~~~~~p~~~~------------~~~~~~l~~~-~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPERSW------------NTGFDWITDY-QGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCSSCC------------SSSCHHHHHC-CSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchh-----hhcCCCceEecCccCCchhh------------HHHHHHHHhC-CCCEEEEcCCHH
Confidence 45688999999999875422 11122222221111111110 1122334443 458999999999
Q ss_pred cHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeC---------------
Q 009843 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------- 334 (524)
Q Consensus 270 ~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~--------------- 334 (524)
.++.+++.|++.|+.+..+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++|||++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHHhhcCCCCC-CceEEEEecc
Q 009843 335 -----IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (524)
Q Consensus 335 -----~p~s~~~y~Q~~GRagR~G~-~~~~i~~~~~ 364 (524)
.|.|.++|+||+||+||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8899888753
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-37 Score=369.27 Aligned_cols=337 Identities=20% Similarity=0.236 Sum_probs=237.3
Q ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHhc--------------CCCeEEEeCcH
Q 009843 24 EALVKLLRWHF-GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPL 87 (524)
Q Consensus 24 ~~~~~~l~~~f-g~~~~r~~Q~~~i~~~l~-g~d~lv~apTGsGKTl~~~lp~l~--------------~~~~~lvl~P~ 87 (524)
.++....+..| ||++|+++|.++++.++. +++++++||||+|||++|.+|++. .++++||++|+
T Consensus 64 ~~Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 64 EKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TTSCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred HhcCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 33444455567 799999999999999875 689999999999999999999863 25689999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009843 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (524)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (524)
++|++|+.+.|++ .|+.+..+.+....... .. ...+|+++|||.+-. ...........+.+++||
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~-----~~----~~~~IlVtTpEkld~--llr~~~~~~~l~~v~~vI 212 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE-----EI----SATQIIVCTPEKWDI--ITRKGGERTYTQLVRLII 212 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT-----TG----GGCSEEEECHHHHHH--HTTSSTTHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc-----cc----CCCCEEEECHHHHHH--HHcCCccchhhcCcCEEE
Confidence 9999999998876 47777777665432111 01 136788888885310 000000111235699999
Q ss_pred EeccccccccCCCCHHHHHH--HHHH----HHhCCCCCEEEEeccCChhHHHHHHHHhCCCCC--eEEeccCCCC-cceE
Q 009843 164 IDEAHCISSWGHDFRPSYRK--LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRP-NLFY 234 (524)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~--l~~l----~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~--~~~~~~~~~~-~l~~ 234 (524)
|||+|.+.+ -|..... +..+ ...-+++++|+||||.++. .++..+|+...+ ..+..+..|| .+..
T Consensus 213 iDEvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~ 286 (1724)
T 4f92_B 213 LDEIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQ 286 (1724)
T ss_dssp ETTGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEE
T ss_pred EecchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEE
Confidence 999999864 2332221 1222 2234578999999999763 567788865321 2222223333 3332
Q ss_pred EEEe-eC-chhhHHHHHH----HHHHh-cCCccEEEEeCccccHHHHHHHHHhC--------------------------
Q 009843 235 EVRY-KD-LLDDAYADLC----SVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------------------------- 281 (524)
Q Consensus 235 ~v~~-~~-~~~~~~~~l~----~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------- 281 (524)
.+.. .. ........+. +.+.+ ..+.++||||+||+.|+.+|+.|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1724)
T 4f92_B 287 TYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAE 366 (1724)
T ss_dssp ECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTS
T ss_pred EEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhc
Confidence 2211 11 1112222222 22222 34568999999999999999888631
Q ss_pred -----------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE----eC------CCCCHH
Q 009843 282 -----------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSME 340 (524)
Q Consensus 282 -----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~----~~------~p~s~~ 340 (524)
..++++|||||+.++|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.|..
T Consensus 367 ~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~ 446 (1724)
T 4f92_B 367 QCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGAL 446 (1724)
T ss_dssp CCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHH
T ss_pred ccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHH
Confidence 124889999999999999999999999999999999999999999999995 33 456999
Q ss_pred HHHHHHhhcCCCCC--CceEEEEeccccHHHHHHHHHhc
Q 009843 341 AFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKN 377 (524)
Q Consensus 341 ~y~Q~~GRagR~G~--~~~~i~~~~~~d~~~~~~l~~~~ 377 (524)
+|.||+|||||.|. .|.++++.++++......++...
T Consensus 447 ~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 447 DILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp HHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred HHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 99999999999875 68899999999887777776543
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.5e-38 Score=345.82 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=201.4
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009843 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (524)
Q Consensus 38 ~~r~~Q~-----~~i~~~l------~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (524)
.|++.|. ++|+.++ +++|++++||||+|||++|++|++. .+.+++|++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8899999 9998888 8999999999999999999988874 36789999999999999999998765
Q ss_pred CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccccc---Chh-hHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009843 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (524)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~---t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (524)
+.. ..... . .+.||..+. +.+ +...+........+++|||||||++. ..+.
T Consensus 295 i~~--~~~~l------------~--------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPAV------------Q--------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred eee--ecccc------------c--------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 431 11000 0 023443221 222 22333333356779999999999982 1122
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCC
Q 009843 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (524)
Q Consensus 179 ~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (524)
.....+..+.. .++.++++||||+++.+.. ......+... +..... ......+...+.+ .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~----------v~~~~~---~~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHD----------VSSEIP---DRAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEE----------EECCCC---SSCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEE----------EeeecC---HHHHHHHHHHHHh-CC
Confidence 22222333222 2578899999999876321 0000111110 000000 0111112233333 46
Q ss_pred ccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE------
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~------ 332 (524)
+++||||++++.++.+++.|++.|+.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 689999999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHHhhcCCC-CCCceEEEEe---ccccHHHHHH
Q 009843 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEF 372 (524)
Q Consensus 333 --------------~~~p~s~~~y~Q~~GRagR~-G~~~~~i~~~---~~~d~~~~~~ 372 (524)
+++|.|.++|+||+||+||. |+.|.|++|+ ++.|...+..
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 67999999999999999999 7899999997 4555544443
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.3e-37 Score=326.14 Aligned_cols=288 Identities=18% Similarity=0.169 Sum_probs=216.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eeEeccCCCHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (524)
.|+|+|.++++++++++++++.+|||+|||++|+.++...++++||++|+++|+.|+.++++++++. +..+++....
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6899999999999999999999999999999999999888899999999999999999999999888 7777765431
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCE
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~i 196 (524)
..+++++||+.+... .... ...+++|||||||++...+ |+ .+...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~~~------~~~~-~~~~~liIvDEaH~~~~~~--~~-------~~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVN------AEKL-GNRFMLLIFDEVHHLPAES--YV-------QIAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHHHT------HHHH-TTTCSEEEEETGGGTTSTT--TH-------HHHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHHHH------HHHh-cCCCCEEEEECCcCCCChH--HH-------HHHHhcCCCeE
Confidence 256777777654321 1111 1348999999999998754 33 24556778889
Q ss_pred EEEeccCChhHHH--HHHHHh---------------CCCCCeEEe--ccCC-------------------CCcce-----
Q 009843 197 LALTATAAPKVQK--DVMESL---------------CLQNPLVLK--SSFN-------------------RPNLF----- 233 (524)
Q Consensus 197 i~lSAT~~~~~~~--~i~~~l---------------~l~~~~~~~--~~~~-------------------~~~l~----- 233 (524)
++||||+...... .+...+ .+..+.... .... ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999742100 001111 011111100 0000 00000
Q ss_pred -E--EE-----Ee---------------eCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcC
Q 009843 234 -Y--EV-----RY---------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (524)
Q Consensus 234 -~--~v-----~~---------------~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~ 290 (524)
+ .+ .. ......+...+.++++...+.++||||++++.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 0 00 00 00012456778888888778899999999999999999873 567999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC-ceEEEE
Q 009843 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (524)
Q Consensus 291 ~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~-~~~i~~ 361 (524)
+++..+|+.++++|++|+++|||||+++++|+|+|++++||+++.|+|+..|+|++||+||.|+. +.+++|
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965 444443
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.5e-38 Score=329.33 Aligned_cols=277 Identities=13% Similarity=0.112 Sum_probs=188.2
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHh
Q 009843 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (524)
Q Consensus 49 ~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l 124 (524)
++++|+|++++||||+|||++|++|++. .+.+++|++||++|+.|+.+.++.+++. .....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~------------- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQA------------- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSC-------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eeccc-------------
Confidence 3567899999999999999999988875 3669999999999999999998865432 11110
Q ss_pred hcCCCcccEEEeCccccc---Chh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEe
Q 009843 125 DSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (524)
Q Consensus 125 ~~~~~~~~ll~~tpe~v~---t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lS 200 (524)
.. .++||..+. +.+ +...+........++++||||||++ + .+|...+..+..+.. .++.++++||
T Consensus 69 ------~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 69 ------FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp ------CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred ------ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHhc-cCCceEEEEe
Confidence 00 144554322 112 2222333334567999999999998 2 223333333333332 3578899999
Q ss_pred ccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHh
Q 009843 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (524)
Q Consensus 201 AT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~ 280 (524)
||+++.+.. ......+.... ...... .....+...+.+. ++++||||++++.++.+++.|++
T Consensus 138 AT~~~~~~~----~~~~~~~~~~~----------~~~~~~---~~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIEDV----------QTDIPS---EPWNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEEE----------ECCCCS---SCCSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeEe----------eeccCh---HHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999876431 11111111110 000000 0111122333333 56899999999999999999999
Q ss_pred CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE-------------------eCCCCCHHH
Q 009843 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (524)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~-------------------~~~p~s~~~ 341 (524)
.|+.+..+|| ++|..+++.|++|+++|||||+++++|||+| +++||| ++.|.+.++
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688999999999999999999999999999 999997 889999999
Q ss_pred HHHHHhhcCCC-CCCceEEEEe---ccccHHHHHHHH
Q 009843 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFIL 374 (524)
Q Consensus 342 y~Q~~GRagR~-G~~~~~i~~~---~~~d~~~~~~l~ 374 (524)
|+||+||+||. |.+|.|++|+ ++.|...+..+.
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~ 311 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLE 311 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhh
Confidence 99999999998 6899999997 566655555443
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.6e-36 Score=323.60 Aligned_cols=322 Identities=18% Similarity=0.153 Sum_probs=218.2
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 009843 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (524)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (524)
++.++.+|. .|++.|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 445667886 89999999999999998 99999999999999999974 367899999999999998877665
Q ss_pred cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-------hhccCCccEEEEecccccc-c
Q 009843 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-------IHSRGLLNLVAIDEAHCIS-S 172 (524)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-------~~~~~~l~~iViDEaH~i~-~ 172 (524)
+|+.+..+.++.....+...+ ..+|+|+||..+. +..|.. ...+..+.++||||||.++ +
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~----fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD 209 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYG----FDYLRDNMAFSPEERVQRKLHYALVDEVDSILID 209 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHH----HHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTT
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhh----HHHHHhhhhccHhHhcccCCcEEEECchHHHHHh
Confidence 588888888887765443322 1566666654431 122221 2345679999999999997 5
Q ss_pred cCCC----------CHHHHHHHHHHHHhCC---------------------CCCEE------------------------
Q 009843 173 WGHD----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------ 197 (524)
Q Consensus 173 ~g~~----------fr~~~~~l~~l~~~~~---------------------~~~ii------------------------ 197 (524)
.|.. -...|..+..+...+| ..+++
T Consensus 210 ~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~ 289 (853)
T 2fsf_A 210 EARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGES 289 (853)
T ss_dssp TTTCEEEEEEC---------------------------------------------------------------------
T ss_pred cCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccccc
Confidence 4410 0012333333333333 12222
Q ss_pred EEeccCCh---hHHHHHH-HH--------------------------------hCCCCC---------------------
Q 009843 198 ALTATAAP---KVQKDVM-ES--------------------------------LCLQNP--------------------- 220 (524)
Q Consensus 198 ~lSAT~~~---~~~~~i~-~~--------------------------------l~l~~~--------------------- 220 (524)
++|||.++ .+...+. .. -+++.+
T Consensus 290 Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~ 369 (853)
T 2fsf_A 290 LYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369 (853)
T ss_dssp -------------------------------------------------------------------CCCCCEEEEEEEH
T ss_pred ccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeeh
Confidence 67777542 1110000 00 000000
Q ss_pred ------------------------------eEEeccCCCCcceEE---EEeeCchhhHHHHHHHHHHh--cCCccEEEEe
Q 009843 221 ------------------------------LVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYC 265 (524)
Q Consensus 221 ------------------------------~~~~~~~~~~~l~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~ 265 (524)
.++..+.++|..... +.+. ....++..+.+.++. ..+.++||||
T Consensus 370 qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLVft 448 (853)
T 2fsf_A 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLVGT 448 (853)
T ss_dssp HHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 011122333333221 1122 335788888888864 3567899999
Q ss_pred CccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCc------------------
Q 009843 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV------------------ 327 (524)
Q Consensus 266 ~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v------------------ 327 (524)
+|+..++.|++.|.+.|+++..+||++...++..+.+.|+.| .|+|||+++|+|+|++..
T Consensus 449 ~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~ 526 (853)
T 2fsf_A 449 ISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQI 526 (853)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHH
T ss_pred CcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHH
Confidence 999999999999999999999999999988888888888888 699999999999999873
Q ss_pred -------------------cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 328 -------------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 328 -------------------~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
.+||++++|.|.+.|.||+||+||.|.+|.++.|++.+|.
T Consensus 527 ~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 527 EKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998874
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.1e-37 Score=336.37 Aligned_cols=293 Identities=13% Similarity=0.096 Sum_probs=208.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccC
Q 009843 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (524)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (524)
...+.|.|+.+++.+++|+|+++.||||+|||++|++|++. .+.++||++|+++|+.|+.+.++...+ .+....
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~~v--~~~~~~ 246 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPI--RYQTPA 246 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE--EECCTT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCCce--eEeccc
Confidence 46778888778999999999999999999999999999874 467999999999999999988874322 211110
Q ss_pred CCHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 009843 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (524)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 190 (524)
.. ....+...+.++ +.+ +...+........+++|||||||++ +. .|...+..+......
T Consensus 247 l~-----------~~~tp~~~i~~~------t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~--~~~~~~~~i~~~l~~ 306 (618)
T 2whx_A 247 VK-----------SDHTGREIVDLM------CHATFTTRLLSSTRVPNYNLIVMDEAHFT-DP--CSVAARGYISTRVEM 306 (618)
T ss_dssp SS-----------CCCCSSSCEEEE------EHHHHHHHHHHCSSCCCCSEEEEESTTCC-SH--HHHHHHHHHHHHHHH
T ss_pred ce-----------eccCCCceEEEE------ChHHHHHHHhccccccCCeEEEEECCCCC-Cc--cHHHHHHHHHHHhcc
Confidence 00 011111222222 333 2223333344677999999999997 32 244444444333221
Q ss_pred CCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCcccc
Q 009843 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT 270 (524)
Q Consensus 191 ~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~ 270 (524)
++.++++||||++..+.. +...++..+......+. ..+..+...+.+. ++++||||+|++.
T Consensus 307 -~~~q~il~SAT~~~~~~~-----~~~~~~~~~~v~~~~~~------------~~~~~ll~~l~~~-~~~~LVF~~s~~~ 367 (618)
T 2whx_A 307 -GEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPE------------RSWNTGFDWITDY-QGKTVWFVPSIKA 367 (618)
T ss_dssp -TSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCS------------SCCSSSCHHHHHC-CSCEEEECSSHHH
T ss_pred -cCccEEEEECCCchhhhh-----hhccCCceeeecccCCH------------HHHHHHHHHHHhC-CCCEEEEECChhH
Confidence 578999999999876431 11112222221111110 1111223334443 5689999999999
Q ss_pred HHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEE--------------------
Q 009843 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV-------------------- 330 (524)
Q Consensus 271 ~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~V-------------------- 330 (524)
++.+++.|++.|+.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 368 a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 368 GNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999999984 688899999999999999999999999997 8888
Q ss_pred EEeCCCCCHHHHHHHHhhcCCCCC-CceEEEEec---cccHHHHHHHH
Q 009843 331 CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFIL 374 (524)
Q Consensus 331 I~~~~p~s~~~y~Q~~GRagR~G~-~~~~i~~~~---~~d~~~~~~l~ 374 (524)
|+++.|.|.++|+||+||+||.|. +|.|++|++ +.|...+..+.
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le 490 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTE 490 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHH
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHH
Confidence 778889999999999999999975 899999997 66665555443
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.4e-35 Score=317.94 Aligned_cols=326 Identities=17% Similarity=0.134 Sum_probs=239.5
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 009843 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (524)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (524)
++.++.+|+ .|++.|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++||+|++.|+.|..+.+..
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 455678999 99999999999999998 99999999999999999964 367899999999999998777665
Q ss_pred cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccCC-
Q 009843 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGH- 175 (524)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~- 175 (524)
+|+.+..+.++.....+...+. .+|+|+||..++-.-+...+ .....+..+.++||||||.++ +.+.
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~--------~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYN--------ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred cCCeEEEEeCCCCHHHHHHhcC--------CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 5899988888877655443332 57877777654321111111 112345669999999999997 4321
Q ss_pred ---------CCHHHHHHHHHHHHhCC----------CCCEE-----------------EEeccCCh---hHHHHHHH-Hh
Q 009843 176 ---------DFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVME-SL 215 (524)
Q Consensus 176 ---------~fr~~~~~l~~l~~~~~----------~~~ii-----------------~lSAT~~~---~~~~~i~~-~l 215 (524)
+-...|..+..+...+| +.+++ ++|||.++ .+...+.. .+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 11345677777777776 34455 67888754 22221111 11
Q ss_pred CCCC-------C--------------------------------------------------------------------
Q 009843 216 CLQN-------P-------------------------------------------------------------------- 220 (524)
Q Consensus 216 ~l~~-------~-------------------------------------------------------------------- 220 (524)
...+ +
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 0000 0
Q ss_pred --------eEEeccCCCCcceEE---EEeeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEE
Q 009843 221 --------LVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (524)
Q Consensus 221 --------~~~~~~~~~~~l~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~ 287 (524)
.++..+.++|..... +.+. ....++..+.+.+.. ..+.++||||+|++.++.|++.|.+.|+++..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 011112233322211 1122 235678888887754 35678999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCc----------------------------------------
Q 009843 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------------- 327 (524)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v---------------------------------------- 327 (524)
+||++...++..+.+.|+.| .|+|||+++|+|+|++.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888888888777 699999999999999975
Q ss_pred ------------cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 328 ------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 328 ------------~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
.+||++++|.|.+.|.|++||+||.|.+|.++.|++.+|.
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998875
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.4e-36 Score=331.16 Aligned_cols=327 Identities=16% Similarity=0.138 Sum_probs=234.5
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHhc------C--CCeEEEe
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~-g~d~lv~apTGsGKTl~~~lp~l~------~--~~~~lvl 84 (524)
...|..+++++.+.+.++.. | ..|.+.|+++|..++. +++++++||||+|||+ ++|++. . ++.++++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 45678889999999999884 5 6788899998877765 5679999999999998 455442 1 4569999
Q ss_pred CcHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009843 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (524)
Q Consensus 85 ~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (524)
+|+++|+.|+.+.+.. ++.......+..... . .......+++++||+.+. ..+........+++||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~------~--~~~~~~~~I~v~T~G~l~-----r~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF------E--NKTSNKTILKYMTDGMLL-----REAMEDHDLSRYSCII 213 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT------E--EECCTTCSEEEEEHHHHH-----HHHHHSTTCTTEEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecc------c--cccCCCCCEEEECHHHHH-----HHHhhCccccCCCEEE
Confidence 9999999999887755 444322111110000 0 011123567666665432 2233334466799999
Q ss_pred Eecccc-ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCc-
Q 009843 164 IDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL- 241 (524)
Q Consensus 164 iDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~- 241 (524)
|||+|. ..+ ....+..+..+....++.++++||||++.+ .+...++ ..+.+.. .....++...+.....
T Consensus 214 lDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~vi~v-~gr~~pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPLLAV-PGRTYPVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCEEEC-CCCCCCEEEECCSSCCS
T ss_pred ecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-CCCcccc-cCcccceEEEEecCCch
Confidence 999996 222 111234456666777889999999999754 3344442 2333322 2222222222221111
Q ss_pred --hhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHh-----------CCCceEEEcCCCCHHHHHHHHHHHh---
Q 009843 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI--- 305 (524)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~-----------~g~~~~~~h~~l~~~~R~~~~~~f~--- 305 (524)
....+..+.+++....++++||||+++++++.+++.|.+ .++.+..+||+|+.++|..+++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 123344555555555678999999999999999999985 5788999999999999999999999
Q ss_pred --cCCCcEEEEcccccccccCCCccEEEEeCC------------------CCCHHHHHHHHhhcCCCCCCceEEEEeccc
Q 009843 306 --SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (524)
Q Consensus 306 --~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~ 365 (524)
+|..+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||. .+|.|+.+|+..
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 88999999999999999 899999999877
Q ss_pred cH
Q 009843 366 DR 367 (524)
Q Consensus 366 d~ 367 (524)
+.
T Consensus 444 ~~ 445 (773)
T 2xau_A 444 AF 445 (773)
T ss_dssp HH
T ss_pred Hh
Confidence 66
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9.7e-37 Score=321.67 Aligned_cols=268 Identities=14% Similarity=0.110 Sum_probs=186.5
Q ss_pred HHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHH
Q 009843 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (524)
Q Consensus 48 ~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 123 (524)
..+.+++++++.||||+|||++|++|++. .++++||++|+++|+.|+.+.++.. ............
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~-------- 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQRE-------- 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccC--------
Confidence 34567889999999999999999999875 5789999999999999999998743 322222111100
Q ss_pred hhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc-----cccCCCCHHHHHHHHHHHHhCCCCCEEE
Q 009843 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPILA 198 (524)
Q Consensus 124 l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i-----~~~g~~fr~~~~~l~~l~~~~~~~~ii~ 198 (524)
..+...+.+++.. .+...+........+++|||||||+. ..+| .+. .+...++.++++
T Consensus 86 ---~t~~~~i~~~~~~-----~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~-~~~~~~~~~~il 148 (459)
T 2z83_A 86 ---HQGNEIVDVMCHA-----TLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIA-TKVELGEAAAIF 148 (459)
T ss_dssp -----CCCSEEEEEHH-----HHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHH-HHHHTTSCEEEE
T ss_pred ---CCCCcEEEEEchH-----HHHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHH-HHhccCCccEEE
Confidence 0111223333322 13334444445667999999999984 2222 111 122346889999
Q ss_pred EeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHH
Q 009843 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL 278 (524)
Q Consensus 199 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L 278 (524)
||||++..+.. ......|...... ..+ ......+.+++... ++++||||+|++.++.+++.|
T Consensus 149 ~SAT~~~~~~~----~~~~~~pi~~~~~-----------~~~--~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 149 MTATPPGTTDP----FPDSNAPIHDLQD-----------EIP--DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp ECSSCTTCCCS----SCCCSSCEEEEEC-----------CCC--SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHH
T ss_pred EEcCCCcchhh----hccCCCCeEEecc-----------cCC--cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHH
Confidence 99999875321 1111222221110 000 01111122334444 568999999999999999999
Q ss_pred HhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEE--------------------eCCCCC
Q 009843 279 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPKS 338 (524)
Q Consensus 279 ~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~--------------------~~~p~s 338 (524)
++.|+.+..+|++ +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.|
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999995 6788999999999999999999999999999 99999 779999
Q ss_pred HHHHHHHHhhcCCCCC-CceEEEEeccc
Q 009843 339 MEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (524)
Q Consensus 339 ~~~y~Q~~GRagR~G~-~~~~i~~~~~~ 365 (524)
.++|+||+||+||.|. +|.|++|+.+.
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 99999999875
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.4e-36 Score=324.55 Aligned_cols=274 Identities=22% Similarity=0.218 Sum_probs=200.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (524)
.+++.|++++..+.++++++++||||+|||++|.+|++.++.+++|++|+++|+.|..+.+.+ ++.......+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 456677777777778899999999999999999999999888999999999999999888765 5655544443321
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---C
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---D 193 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~ 193 (524)
.....+++++||+.+.. ........+++|||||||++.. +|+..+. .+.+.++ .
T Consensus 294 ----------~~~~~~IlV~TPGrLl~-------~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~---~Il~~l~~~~~ 350 (666)
T 3o8b_A 294 ----------ITTGAPVTYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDS---TTILGIG---TVLDQAETAGA 350 (666)
T ss_dssp ----------ECCCCSEEEEEHHHHHH-------TTSCCTTSCSEEEETTTTCCSH---HHHHHHH---HHHHHTTTTTC
T ss_pred ----------ccCCCCEEEECcHHHHh-------CCCcccCcccEEEEccchhcCc---cHHHHHH---HHHHhhhhcCC
Confidence 12236788888776411 1123345699999999998642 2554444 4445554 2
Q ss_pred CCEEEEeccCChhHHHHHHHHhCCCCCeEEe--ccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccH
Q 009843 194 VPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271 (524)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~--~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~ 271 (524)
..+++||||+++.+ ....+.+.. ..... .+.+...... ++...++++||||+|++.+
T Consensus 351 ~llil~SAT~~~~i--------~~~~p~i~~v~~~~~~-~i~~~~~~~~------------l~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 351 RLVVLATATPPGSV--------TVPHPNIEEVALSNTG-EIPFYGKAIP------------IEAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp SEEEEEESSCTTCC--------CCCCTTEEEEECBSCS-SEEETTEEEC------------GGGSSSSEEEEECSCHHHH
T ss_pred ceEEEECCCCCccc--------ccCCcceEEEeecccc-hhHHHHhhhh------------hhhccCCcEEEEeCCHHHH
Confidence 23788899998742 112222111 11111 1110000000 1223567899999999999
Q ss_pred HHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEE----------EeC-------
Q 009843 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN------- 334 (524)
Q Consensus 272 e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI----------~~~------- 334 (524)
+.+++.|++.|+.+..+||+|++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999999999999999999764 4567779999999999999996 99999 566
Q ss_pred ----CCCCHHHHHHHHhhcCCCCCCceEEEEeccccHH
Q 009843 335 ----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (524)
Q Consensus 335 ----~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~ 368 (524)
.|.|.++|+||+||+|| |++|. +.||++.|..
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 99999 9999887754
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.4e-35 Score=310.32 Aligned_cols=266 Identities=16% Similarity=0.121 Sum_probs=182.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcC
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 127 (524)
+|+++++++|||+|||++|++|++ ..+.+++|++||++|+.|+.+.++ ++......+.... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~-----------~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS-----------ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc-----------cC
Confidence 478999999999999999988887 457799999999999999988886 4444443322110 11
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
.+...+.+.+... +...+........++++||||||++..+ +......+..+. ..++.++++||||+++.+
T Consensus 68 ~~~~~~~~~~~~~-----l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 68 TGNEIVDFMCHST-----FTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -CCCSEEEEEHHH-----HHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred CCCceEEEEchHH-----HHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 1112232333222 2233444444667999999999997422 222222333322 235789999999998742
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCcce-EEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceE
Q 009843 208 QKDVMESLCLQNPLVLKSSFNRPNLF-YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (524)
Q Consensus 208 ~~~i~~~l~l~~~~~~~~~~~~~~l~-~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~ 286 (524)
.. +... ++.+. ...... ...+..+.+++... ++++||||++++.++.+++.|++.|+.+.
T Consensus 139 ~~-----~~~~----------~~~i~~~~~~~~---~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 139 EA-----FPPS----------NSPIIDEETRIP---DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp CS-----SCCC----------SSCCEEEECCCC---SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hh-----hcCC----------CCceeeccccCC---HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 11 1000 11111 100100 11112233445554 45899999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccE-----------------EEEeCCCCCHHHHHHHHhhc
Q 009843 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRA 349 (524)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~-----------------VI~~~~p~s~~~y~Q~~GRa 349 (524)
.+||+ +|..++++|++|+++|||||+++++|||+| +.. ||+++.|.+.++|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 578899999999999999999999999999 544 68899999999999999999
Q ss_pred CCCCCCceEEEEec
Q 009843 350 GRDQLPSKSLLYYG 363 (524)
Q Consensus 350 gR~G~~~~~i~~~~ 363 (524)
||.|..+.|+++|.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 99997665555554
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.9e-34 Score=314.22 Aligned_cols=294 Identities=18% Similarity=0.192 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEcCCCChHHHHHHHHHhc------------CCCeEEEeCcHHHHHHHHH-HHHH
Q 009843 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIALMENQV-IGLK 99 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~----g-~d~lv~apTGsGKTl~~~lp~l~------------~~~~~lvl~P~~~L~~q~~-~~l~ 99 (524)
.+|++|.++++.+++ + +++++.+|||+|||++++..+.. ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 4 56899999999999986544321 4579999999999999999 7888
Q ss_pred HcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH
Q 009843 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (524)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (524)
.++.....+.... .....+++++||+.+........+........+++|||||||++...+
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----- 318 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----- 318 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----
Confidence 8776655444211 122478888998877553211111222334568999999999987643
Q ss_pred HHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCCCeEEe-------ccCCCCcceEEEEee-------------
Q 009843 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-------SSFNRPNLFYEVRYK------------- 239 (524)
Q Consensus 180 ~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-------~~~~~~~l~~~v~~~------------- 239 (524)
+..+..+...+++.++++||||+......+....++. +.... ..+..+...+.+...
T Consensus 319 -~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~--~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 319 -NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN--PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS--CSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred -hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC--ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 1334556677888889999999986554444444332 11100 001111111111000
Q ss_pred --------------Cc----------hhhHHHHHHHHHHh-cCCccEEEEeCccccHHHHHHHHHhCCC--------ceE
Q 009843 240 --------------DL----------LDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--------SCA 286 (524)
Q Consensus 240 --------------~~----------~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~--------~~~ 286 (524)
.. .......+.++++. ...+++||||++++.|+.+++.|.+.+. .+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 00 01112334444544 3457899999999999999999987643 277
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCc---EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCC
Q 009843 287 AYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (524)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~---VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (524)
.+||+++. +|+.++++|++|+.+ |||+|+++++|||+|++++||+++.|.|+..|+|++||+||.|.
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88998764 799999999998866 88899999999999999999999999999999999999999875
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-33 Score=322.57 Aligned_cols=314 Identities=17% Similarity=0.179 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhc---C--CCeEEEeCcHHHHHHHHHHHH-HHcCCceeEec
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGL-KEKGIAGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~---~--~~~~lvl~P~~~L~~q~~~~l-~~~gi~~~~~~ 109 (524)
+|+|+|.+++..++.. ..+++.++||+|||++++..+.. . .+++|||+|+ +|+.||..++ +.+++++..++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6899999999998864 47899999999999988665532 2 3489999999 9999999999 55787777665
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (524)
+..... ............+++++|++.+... .....+. ...+++|||||||++..++......|..+..+.
T Consensus 232 ~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~----~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 232 DERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC----EAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp HHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH----TSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred cchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHhh----hcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 432211 1111112222468999998877542 2222222 335899999999999876655555566666665
Q ss_pred HhCCCCCEEEEeccCChhHHHHHHHHhCC-------------------------------C-------------------
Q 009843 189 NYLPDVPILALTATAAPKVQKDVMESLCL-------------------------------Q------------------- 218 (524)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~l-------------------------------~------------------- 218 (524)
.. ...+++|||||.+....++...+.+ .
T Consensus 304 ~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 EH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp TT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred hc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 43 3459999999864211111000000 0
Q ss_pred --------------------------------CCeEEec------cCCCCcce-EEEE----------------------
Q 009843 219 --------------------------------NPLVLKS------SFNRPNLF-YEVR---------------------- 237 (524)
Q Consensus 219 --------------------------------~~~~~~~------~~~~~~l~-~~v~---------------------- 237 (524)
....+.. .+...... +.+.
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 00000000 0000
Q ss_pred ---------------------eeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHh-CCCceEEEcCCCCHH
Q 009843 238 ---------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDK 295 (524)
Q Consensus 238 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~-~g~~~~~~h~~l~~~ 295 (524)
.......+...+.++++...+.++||||++++.++.+++.|.+ .|+++..+||+|+..
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 0011134778888888887888999999999999999999995 599999999999999
Q ss_pred HHHHHHHHHhcCC--CcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEe
Q 009843 296 ARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (524)
Q Consensus 296 ~R~~~~~~f~~g~--~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~ 362 (524)
+|..++++|++|+ ++|||||+++++|+|+|++++||++++|+++..|+|++||+||.|+.+.+++++
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 9999999999998 999999999999999999999999999999999999999999999988766664
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.2e-33 Score=303.03 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=205.2
Q ss_pred HHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcC
Q 009843 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (524)
Q Consensus 48 ~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~ 127 (524)
...++|++++++||||+|||+. .+..+...+..+|++|+++|+.|+.+.+++.|+.+..+.+.... .....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~-al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~Tp 220 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH-AIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPN 220 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH-HHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTT
T ss_pred HHhcCCCEEEEEcCCCCCHHHH-HHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCC
Confidence 3446789999999999999984 44555555667999999999999999999999998877765432 00000
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CCCEEEEeccCCh
Q 009843 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAP 205 (524)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~ii~lSAT~~~ 205 (524)
....+++.+|+|.+.. ...++++||||||++.+.+ |...+. .+....+ +++++++|||.
T Consensus 221 Gr~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~---~~l~~l~~~~i~il~~SAT~-- 281 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWT---RALLGLCAEEVHLCGEPAAI-- 281 (677)
T ss_dssp CCCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHH---HHHHHCCEEEEEEEECGGGH--
T ss_pred CcccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHH---HHHHccCccceEEEeccchH--
Confidence 1125667777665431 2347999999999998755 443333 3333443 56788888883
Q ss_pred hHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCce
Q 009843 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (524)
Q Consensus 206 ~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~ 285 (524)
.....+....+ ....+........+.+ .... + ..+.... ...||||+|+++++.+++.|.+.|+.+
T Consensus 282 ~~i~~l~~~~~--~~~~v~~~~r~~~l~~--~~~~-----l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v 347 (677)
T 3rc3_A 282 DLVMELMYTTG--EEVEVRDYKRLTPISV--LDHA-----L----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLES 347 (677)
T ss_dssp HHHHHHHHHHT--CCEEEEECCCSSCEEE--CSSC-----C----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcC--CceEEEEeeecchHHH--HHHH-----H----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCe
Confidence 33343444332 2222222111111111 1110 0 0111222 345899999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhc--CCCcEEEEcccccccccCCCccEEEEeCC--------------CCCHHHHHHHHhhc
Q 009843 286 AAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRA 349 (524)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~--g~~~VlVaT~a~~~GiD~p~v~~VI~~~~--------------p~s~~~y~Q~~GRa 349 (524)
..+||+|++++|..+++.|++ |.++|||||+++++|||+ ++++||++++ |.|..+|+||+|||
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRA 426 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRA 426 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTB
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCC
Confidence 999999999999999999999 889999999999999999 8999999999 77999999999999
Q ss_pred CCCCCC---ceEEEEeccccHHHHHHHHHhccCC
Q 009843 350 GRDQLP---SKSLLYYGMDDRRRMEFILSKNQSK 380 (524)
Q Consensus 350 gR~G~~---~~~i~~~~~~d~~~~~~l~~~~~~~ 380 (524)
||.|.. |.|++++ ..|...+..++......
T Consensus 427 GR~g~~g~~G~v~~l~-~~d~~~~~~~~~~~~~~ 459 (677)
T 3rc3_A 427 GRFSSRFKEGEVTTMN-HEDLSLLKEILKRPVDP 459 (677)
T ss_dssp TCTTSSCSSEEEEESS-TTHHHHHHHHHHSCCCC
T ss_pred CCCCCCCCCEEEEEEe-cchHHHHHHHHhcCcch
Confidence 999965 5555554 45666667776655433
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.2e-31 Score=280.26 Aligned_cols=335 Identities=18% Similarity=0.182 Sum_probs=234.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 009843 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (524)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (524)
.++.++++|. .+++.|.-..-.+.+|+ ++.|.||.|||+++.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 65 REAa~R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 3455777887 58889999888888887 99999999999999999874 377899999999999997777665
Q ss_pred -cCCceeEeccC--------------------------------------------------CCHHHHHHHHHHhhcCCC
Q 009843 101 -KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKP 129 (524)
Q Consensus 101 -~gi~~~~~~~~--------------------------------------------------~~~~~~~~~~~~l~~~~~ 129 (524)
+|+.+..+.+. ....++...+.
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~------- 214 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL------- 214 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH-------
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc-------
Confidence 68988877762 11112222221
Q ss_pred cccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-cc--------C--CCCHHHHHH------------
Q 009843 130 SLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SW--------G--HDFRPSYRK------------ 183 (524)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~--------g--~~fr~~~~~------------ 183 (524)
.+|.|+|.--++-.-+...+ .....+..+.+.||||+|.++ +. | .+-...|..
T Consensus 215 -~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 215 -CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp -SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred -CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 46777765433222222211 011123457888888888864 10 0 000000000
Q ss_pred -----------------------------------------HH-HHHHh--C----------------------------
Q 009843 184 -----------------------------------------LS-SLRNY--L---------------------------- 191 (524)
Q Consensus 184 -----------------------------------------l~-~l~~~--~---------------------------- 191 (524)
+. .++.. +
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 00 00000 0
Q ss_pred ---------------------------------C-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEE-
Q 009843 192 ---------------------------------P-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV- 236 (524)
Q Consensus 192 ---------------------------------~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v- 236 (524)
. -..+.+||+|+..+. ..+.+..++. ++..+.++|......
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~ 449 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHD 449 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECC
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecC
Confidence 0 014889999998754 5556655543 445566666554432
Q ss_pred -EeeCchhhHHHHHHHHHHhc--CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 237 -RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 237 -~~~~~~~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
........+...+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+||+....++..+.+.++.| .|+|
T Consensus 450 d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 450 DLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred cEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 12233467888888888653 567899999999999999999999999999999997666666666666655 6999
Q ss_pred EcccccccccCC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccH-------HHHHHHHHhcc
Q 009843 314 ATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-------RRMEFILSKNQ 378 (524)
Q Consensus 314 aT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~-------~~~~~l~~~~~ 378 (524)
||+++|+|+|++ ++.+||++++|.|.+.|.||+||+||.|.+|.+++|++.+|. .++..+++...
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 999999999997 556999999999999999999999999999999999999883 34455555443
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.98 E-value=2e-31 Score=284.70 Aligned_cols=299 Identities=15% Similarity=0.131 Sum_probs=208.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC--Cce
Q 009843 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~g--i~~ 105 (524)
..|+|+|.++++.+. .++++++.+|||+|||++++..+.. ..+++|||+| .+|+.||.++++++. ...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998763 5788999999999999886543321 2468999999 679999999999863 444
Q ss_pred eEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 009843 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (524)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (524)
..+.+.... ......+++++|++.+..... .....+++||+||||.+...+. ...
T Consensus 115 ~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 115 AVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp EECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEEecCchh-----------ccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH-------HHH
Confidence 444433210 111236788888887765432 1223589999999999976441 223
Q ss_pred HHHHhCCCCCEEEEeccCChhHHHHHHHHhCCC----------------------------------CCeEEeccC----
Q 009843 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSSF---- 227 (524)
Q Consensus 186 ~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~----------------------------------~~~~~~~~~---- 227 (524)
.....++....++||||+..+...++...+.+- .+.+++...
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 333445566789999999765444443322211 122222111
Q ss_pred ---CCCcceEEEEeeCc--------------------------------------------------------hhhHHHH
Q 009843 228 ---NRPNLFYEVRYKDL--------------------------------------------------------LDDAYAD 248 (524)
Q Consensus 228 ---~~~~l~~~v~~~~~--------------------------------------------------------~~~~~~~ 248 (524)
..|.........+. ...++..
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 12222222211110 0123444
Q ss_pred HHHHHHhc--CCccEEEEeCccccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEccccccccc
Q 009843 249 LCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGID 323 (524)
Q Consensus 249 l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VlVaT~a~~~GiD 323 (524)
+.++++.. .+.++||||.++..++.+++.|... |+.+..+||+++.++|..++++|++| ..+ +|++|.++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 45555542 5678999999999999999999885 99999999999999999999999988 565 7999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 009843 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (524)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~ 361 (524)
+++++.||++++|+|+..|.|++||++|.|+...+.++
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999999999999999999999987766443
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=7e-29 Score=272.07 Aligned_cols=309 Identities=14% Similarity=0.132 Sum_probs=204.3
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHhc---C-------CCeEEEeCcHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPALA---K-------PGIVLVVSPLIALMENQVIGL 98 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l---------~g~d~lv~apTGsGKTl~~~lp~l~---~-------~~~~lvl~P~~~L~~q~~~~l 98 (524)
.++|+|.+++..+. .+..+++..+||.|||+..+..+.. . .+++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999874 3456899999999999876544321 1 2469999997 8999999999
Q ss_pred HHc-C--CceeEeccCCCHHHHHHHHHHhhcC---CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 99 KEK-G--IAGEFLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 99 ~~~-g--i~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
.+. + +....+.++. .............. ....+++++|++.+.. .........+++||+||||++..
T Consensus 134 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~------~~~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISYETFRL------HAEVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHGGGCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH------HTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHcCCCeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHh------hHHHhhcCCccEEEEECceecCC
Confidence 885 2 3334444333 22222222222221 1235677777665432 22223344689999999999975
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhC------------------------------------
Q 009843 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC------------------------------------ 216 (524)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~------------------------------------ 216 (524)
.. .........+.....++||||+..+...++...+.
T Consensus 207 ~~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 207 SD-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp TC-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred hh-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 33 22222233345567899999996543111111000
Q ss_pred ----------CCCCeEEecc-----CCCCcceEEEEeeC-----------------------------------------
Q 009843 217 ----------LQNPLVLKSS-----FNRPNLFYEVRYKD----------------------------------------- 240 (524)
Q Consensus 217 ----------l~~~~~~~~~-----~~~~~l~~~v~~~~----------------------------------------- 240 (524)
+-.|.+++.. ...|.....+....
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 0001111100 00111111111000
Q ss_pred ------------------------------------chhhHHHH---HHHHHHhcCCccEEEEeCccccHHHHHHHHHhC
Q 009843 241 ------------------------------------LLDDAYAD---LCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281 (524)
Q Consensus 241 ------------------------------------~~~~~~~~---l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (524)
....++.. +.+.++...+.++|||++++..++.+...|...
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 00122222 333333345779999999999999999999999
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCc---EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceE
Q 009843 282 GISCAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (524)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~ 358 (524)
|+.+..+||+++.++|..++++|++|... +|++|.++++|+|++++++||++|+|+++..|.|++||++|.|+...+
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCce
Confidence 99999999999999999999999998764 899999999999999999999999999999999999999999987765
Q ss_pred EEE
Q 009843 359 LLY 361 (524)
Q Consensus 359 i~~ 361 (524)
.++
T Consensus 520 ~v~ 522 (644)
T 1z3i_X 520 YIY 522 (644)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-28 Score=277.31 Aligned_cols=315 Identities=18% Similarity=0.174 Sum_probs=216.0
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHh------cCCCeEEEeCcHHHHHHHHHHHHHHc--CCc
Q 009843 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~d~lv~apTGsGKTl~~~lp~l------~~~~~~lvl~P~~~L~~q~~~~l~~~--gi~ 104 (524)
..+||+|.+++..++ .++++++..+||.|||+..+..+. ...+.+|||+| .+|+.||.+++.+. ++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 379999999998776 788999999999999987654332 23678999999 78899999999885 344
Q ss_pred eeEeccCCCHHHHHHHHHHhh------cCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 009843 105 GEFLSSTQTMQVKTKIYEDLD------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (524)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~------~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (524)
+....+............... ......+++++|++.+... ........+++|||||||.+...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~------~~~l~~~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD------RAELGSIKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT------HHHHHTSEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh------HHHHhcCCcceeehhhhhhhcCch----
Confidence 555544433222111111000 1223467888888876432 111222348999999999996533
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHHHHhCCCC-------------------------------CeEEecc-
Q 009843 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-------------------------------PLVLKSS- 226 (524)
Q Consensus 179 ~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~l~~-------------------------------~~~~~~~- 226 (524)
..+......++....++|||||..+...++...+.+-. |.+++..
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 22333344455556899999996544444433332211 1122110
Q ss_pred ----CCCCcceEEEEeeCc-------------------------------------------------------------
Q 009843 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (524)
Q Consensus 227 ----~~~~~l~~~v~~~~~------------------------------------------------------------- 241 (524)
...|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 001111111111000
Q ss_pred -------------hhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc
Q 009843 242 -------------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (524)
Q Consensus 242 -------------~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (524)
...++..|.+++.. ..+.++|||+..+..++.|...|...|+.+..+||+++..+|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 01244445555554 246789999999999999999999999999999999999999999999998
Q ss_pred CCC---cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEE--Eeccc
Q 009843 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (524)
Q Consensus 307 g~~---~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~--~~~~~ 365 (524)
+.. .+|++|.++|.|||++.+++||+++.|+|+..+.|++||++|.|+...+.+ |+..+
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 655 499999999999999999999999999999999999999999998766544 44444
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.3e-27 Score=261.99 Aligned_cols=201 Identities=21% Similarity=0.278 Sum_probs=151.3
Q ss_pred cEEEEeccccc-cccCCCCHHHHHHHHHHHHhC-------------------CCCCEEEEeccCChhHHHHHHHHhCCCC
Q 009843 160 NLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (524)
Q Consensus 160 ~~iViDEaH~i-~~~g~~fr~~~~~l~~l~~~~-------------------~~~~ii~lSAT~~~~~~~~i~~~l~l~~ 219 (524)
.++||||+|++ .+|++.++..+..+..+...- ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~--- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH-----S--- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH-----C---
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh-----h---
Confidence 47899999986 456665666555444443321 1456899999998754221 0
Q ss_pred CeEEecc-----CCCCcceEEEEeeCchhhHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCC
Q 009843 220 PLVLKSS-----FNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (524)
Q Consensus 220 ~~~~~~~-----~~~~~l~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l 292 (524)
..++... ...|. ..+... ......+...+.. ..+.++||||+|++.++.+++.|.+.|+.+..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 0111111 11222 222221 2334444444433 2466899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC-----CCCHHHHHHHHhhcCCCCCCceEEEEeccccH
Q 009843 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (524)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~ 367 (524)
+..+|..++++|++|+++|||||+++++|+|+|++++||+++. |.|..+|+||+|||||.| +|.+++|++..+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999997 999999999999999995 7999999998877
Q ss_pred HHHHHHH
Q 009843 368 RRMEFIL 374 (524)
Q Consensus 368 ~~~~~l~ 374 (524)
...+.+.
T Consensus 553 ~~~~~i~ 559 (664)
T 1c4o_A 553 AMQRAIE 559 (664)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.8e-26 Score=261.61 Aligned_cols=310 Identities=13% Similarity=0.083 Sum_probs=196.5
Q ss_pred hHHHHHHHHHHcC------CCCCCHHHHHHHHHHHc--------------CCCEEEEcCCCChHHHHHHHHHhc--C---
Q 009843 23 KEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPALA--K--- 77 (524)
Q Consensus 23 ~~~~~~~l~~~fg------~~~~r~~Q~~~i~~~l~--------------g~d~lv~apTGsGKTl~~~lp~l~--~--- 77 (524)
.+.++..+....- ...|||+|.+|++.+++ ++++++++|||||||+++ ++++. .
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~ 328 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD 328 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC
Confidence 4566666666221 22599999999999875 368999999999999997 33322 1
Q ss_pred -CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh----
Q 009843 78 -PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---- 152 (524)
Q Consensus 78 -~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~---- 152 (524)
..++|||+|+++|+.|+.+.++.++... ......... ....+... ..+++++||..+ ..+..
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~---l~~~L~~~--~~~IiVtTiqkl------~~~l~~~~~ 395 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAG---LKRNLDKD--DNKIIVTTIQKL------NNLMKAESD 395 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHH---HHHHHHCS--SCCEEEEEHHHH------HHHHHHCCC
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHH---HHHHhcCC--CCCEEEEEHHHH------HHHHhcccc
Confidence 3589999999999999999998875431 111111111 12223222 256666666543 22211
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHH----HHHHHHhC------------
Q 009843 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLC------------ 216 (524)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~----~~i~~~l~------------ 216 (524)
....+...+||+||||+... | .....++..+|+.++++|||||..... ......++
T Consensus 396 ~~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI 467 (1038)
T 2w00_A 396 LPVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAI 467 (1038)
T ss_dssp CGGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHH
T ss_pred hhccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHH
Confidence 11233578999999999642 2 123456778999999999999975321 01111111
Q ss_pred ---CCCCeEEeccCCCCcceE---EEE--------e--eCchhhHHHHHHHHH-H---hc--------CCccEEEEeCcc
Q 009843 217 ---LQNPLVLKSSFNRPNLFY---EVR--------Y--KDLLDDAYADLCSVL-K---AN--------GDTCAIVYCLER 268 (524)
Q Consensus 217 ---l~~~~~~~~~~~~~~l~~---~v~--------~--~~~~~~~~~~l~~~l-~---~~--------~~~~~IIf~~s~ 268 (524)
...|..+......+.+.. ... . .-..+..+..+.+.+ + .. .+.++||||+|+
T Consensus 468 ~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~ 547 (1038)
T 2w00_A 468 RDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSV 547 (1038)
T ss_dssp HHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSH
T ss_pred hCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCH
Confidence 111221110000000000 000 0 000112223333222 2 11 235799999999
Q ss_pred ccHHHHHHHHHhCC------------Cce-EEEcCC----------C----------CH---------------------
Q 009843 269 TTCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND--------------------- 294 (524)
Q Consensus 269 ~~~e~l~~~L~~~g------------~~~-~~~h~~----------l----------~~--------------------- 294 (524)
..|..+++.|.+.+ +.+ .++|++ + +.
T Consensus 548 ~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~ 627 (1038)
T 2w00_A 548 DAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNF 627 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccc
Confidence 99999999997654 455 456653 2 22
Q ss_pred --------HHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC
Q 009843 295 --------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (524)
Q Consensus 295 --------~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~ 355 (524)
..|..++++|++|+++|||+|+++.+|+|+|.+ .|+.++.|.+...|+|++||++|.+..
T Consensus 628 ~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 628 STDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred cccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 788999999999999999999998753
No 60
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=2e-26 Score=222.36 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=151.2
Q ss_pred ccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc-----------CCC
Q 009843 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPG 79 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~-----------~~~ 79 (524)
+.+...|.++++++.+.+.|++ +||..|+++|.++++.+++|+|+++.||||+|||++|++|++. .++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 3445667788999999999998 8999999999999999999999999999999999999999975 266
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhh
Q 009843 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIH 154 (524)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~ 154 (524)
++||++|+++|+.|+.+.++++ ++....+.+.......... +..+ .+++++||+.+.. .+. ...
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~I~v~Tp~~l~~-----~l~~~~~ 172 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---LERG---VEICIATPGRLID-----FLECGKT 172 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---HHHC---CSEEEECHHHHHH-----HHHHTSC
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---hcCC---CCEEEECHHHHHH-----HHHcCCC
Confidence 8999999999999998887774 7777777777665544332 2222 5677777765421 111 223
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
....++++|+||||++.+|| |++.+..+ ...+ ++.++++||||+++.+.+.+...+ .+|..+.
T Consensus 173 ~~~~~~~lViDEah~l~~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 173 NLRRTTYLVLDEADRMLDMG--FEPQIRKI---VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp CCTTCCEEEETTHHHHHHTT--CHHHHHHH---HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred CcccccEEEEeCHHHHhhhC--cHHHHHHH---HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 45678999999999999988 77766654 4444 478899999999999887666654 4665544
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=2.9e-26 Score=207.45 Aligned_cols=152 Identities=21% Similarity=0.367 Sum_probs=137.4
Q ss_pred cCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHh
Q 009843 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (524)
Q Consensus 226 ~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (524)
+...+++...+...+ ...++..|.++++...+.++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 345667766665544 3678899999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 306 ~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
+|+++|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.|++|+.+.|...+..+.+...
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999888887776543
No 62
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.3e-25 Score=246.12 Aligned_cols=170 Identities=21% Similarity=0.274 Sum_probs=131.7
Q ss_pred CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe-c--cCCCCcceEEEEeeCchhhHHHHHHHHHHh--cCCccEEEEeCc
Q 009843 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLK-S--SFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLE 267 (524)
Q Consensus 193 ~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~-~--~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s 267 (524)
..+++++|||+++..... . ....... . ....|. +.+... ......+...+.. ..+.++||||+|
T Consensus 386 ~~q~i~~SAT~~~~~~~~-----~-~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-----T-DEMVEQIIRPTGLLDPL--IDVRPI---EGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-----C-SSCEEECCCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCCEEEEecCCChhHHHh-----h-hCeeeeeecccCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467899999998654221 0 1111110 0 111222 222222 2334444444443 246689999999
Q ss_pred cccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccccCCCccEEEEeCC-----CCCHHHH
Q 009843 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAF 342 (524)
Q Consensus 268 ~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y 342 (524)
++.++.+++.|.+.|+.+..+||+++..+|..++++|++|+++|||||+++++|+|+|++++||+++. |.|.++|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhhcCCCCCCceEEEEeccccHHHHHHHH
Q 009843 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (524)
Q Consensus 343 ~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~ 374 (524)
+||+||+||. .+|.|++|+++.+......+.
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999998 789999999988776555443
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=220.34 Aligned_cols=189 Identities=21% Similarity=0.286 Sum_probs=139.9
Q ss_pred cCCC-CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------------CCCeEE
Q 009843 16 KNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVL 82 (524)
Q Consensus 16 ~~~~-~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------------~~~~~l 82 (524)
.|.+ +++.+.+.+.|.+ +|+.+|+++|.++++.+++|+|+++.||||+|||++|++|++. .++++|
T Consensus 20 ~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~l 98 (228)
T 3iuy_A 20 RFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGML 98 (228)
T ss_dssp SHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEE
T ss_pred hHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEE
Confidence 3444 5788999999998 7999999999999999999999999999999999999999875 467899
Q ss_pred EeCcHHHHHHHHHHHHHHc---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCC
Q 009843 83 VVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGL 158 (524)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~ 158 (524)
|++|+++|+.|+.+.++++ ++....+.+........ ..+.. ..+++++||+.+.. .+. .......
T Consensus 99 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~iiv~Tp~~l~~-----~~~~~~~~~~~ 167 (228)
T 3iuy_A 99 VLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK---GVDIIIATPGRLND-----LQMNNSVNLRS 167 (228)
T ss_dssp EECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS---CCSEEEECHHHHHH-----HHHTTCCCCTT
T ss_pred EEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC---CCCEEEECHHHHHH-----HHHcCCcCccc
Confidence 9999999999999999985 55565555544332221 12222 25777777765422 111 1223556
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeccCChhHHHHHHHHhCCCCCeEE
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~ 223 (524)
++++||||||++.+|| |++.+..+ ...+ ++.++++||||+++.+.+.+.. .+.+|..+
T Consensus 168 ~~~lViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~--~l~~p~~i 226 (228)
T 3iuy_A 168 ITYLVIDEADKMLDME--FEPQIRKI---LLDVRPDRQTVMTSATWPDTVRQLALS--YLKDPMIV 226 (228)
T ss_dssp CCEEEECCHHHHHHTT--CHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEE
T ss_pred ceEEEEECHHHHhccc--hHHHHHHH---HHhCCcCCeEEEEEeeCCHHHHHHHHH--HCCCCEEE
Confidence 8999999999999987 77776655 3334 4788999999999998775544 34566543
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=4.3e-26 Score=216.45 Aligned_cols=197 Identities=16% Similarity=0.213 Sum_probs=145.3
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHHH
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIA 89 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~ 89 (524)
.|+++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|+++
T Consensus 5 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46678899999999988 89999999999999999999999999999999999999999764 568999999999
Q ss_pred HHHHHHHHHHHc--------CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCcc
Q 009843 90 LMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLN 160 (524)
Q Consensus 90 L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~ 160 (524)
|+.|+.+.++++ ++....+.++..... .........+++++||+.+.. .+.. ......++
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTPGRIND-----FIREQALDVHTAH 152 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECHHHHHH-----HHHTTCCCGGGCC
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCHHHHHH-----HHHcCCCCcCcce
Confidence 999999998874 455555555443221 111112236677777775431 1111 22345689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCc
Q 009843 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (524)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 231 (524)
++|+||||++.+|| |. ..+..+...++ +.++++||||+++++.+.+... +.+|..+....++++
T Consensus 153 ~lViDEah~~~~~~--~~---~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 153 ILVVDEADLMLDMG--FI---TDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp EEEECSHHHHHHTT--CH---HHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred EEEEcCchHHhhhC--hH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 99999999999988 44 44555666665 6789999999999887755544 467877766655544
No 65
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=8.4e-26 Score=206.86 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=133.1
Q ss_pred CCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC
Q 009843 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (524)
Q Consensus 229 ~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (524)
.+++...+...+....++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34666666665555568999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcccccccccCCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 309 KQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 309 ~~VlVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
++|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|++|.|++++.+.+...+..+.+...
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999999999999999999999999888877776544
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=215.52 Aligned_cols=192 Identities=21% Similarity=0.313 Sum_probs=145.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----------CCCeEE
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----------~~~~~l 82 (524)
....|.++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++. .+.++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 34567788999999999998 8999999999999999999999999999999999999999874 267899
Q ss_pred EeCcHHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhcc
Q 009843 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (524)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~ 156 (524)
|++|+++|+.|+.+.+++++ +.+..+.+.......... + . ..+++++||+.+.. .+.. ....
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~--~~~iiv~Tp~~l~~-----~l~~~~~~~~ 169 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I--N--NINILVCTPGRLLQ-----HMDETVSFHA 169 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H--T--TCSEEEECHHHHHH-----HHHHCSSCCC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C--C--CCCEEEECHHHHHH-----HHHhcCCccc
Confidence 99999999999999999864 555555555433322211 1 1 26787777775521 2222 1334
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
..++++|+||||++.+|| |... +..+...++ +.++++||||+++.+.+ .....+.+|..+.
T Consensus 170 ~~~~~lViDEah~~~~~~--~~~~---~~~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMG--FADT---MNAVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVW 231 (236)
T ss_dssp TTCCEEEETTHHHHHHTT--THHH---HHHHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEE
T ss_pred ccccEEEEeChHHHhcCC--cHHH---HHHHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEE
Confidence 568999999999999988 5544 455566665 67799999999998866 3344566776654
No 67
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2e-25 Score=209.47 Aligned_cols=189 Identities=23% Similarity=0.230 Sum_probs=144.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
..|+++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 357778999999999998 89999999999999999999999999999999999999999853 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009843 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (524)
+|+.|+.+.++++ ++......+........ ..+. ...+++++||+.+.. .+. .......++++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~---~~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD---DTVHVVIATPGRILD-----LIKKGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT---SCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC---CCCCEEEeCHHHHHH-----HHHcCCcCcccCCEE
Confidence 9999999998875 45566666665543322 1122 236788888875421 122 12235568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeE
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~ 222 (524)
|+||||++.+++ |+..+ ..+...++ +.++++||||+++.+.+.+...+ .+|..
T Consensus 151 ViDEah~~~~~~--~~~~l---~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIM---EDIILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEETHHHHTSTT--THHHH---HHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEChHHhHhhC--cHHHH---HHHHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 999999998865 66544 44555666 78899999999998877666654 45544
No 68
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.4e-25 Score=211.95 Aligned_cols=138 Identities=27% Similarity=0.400 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009843 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (524)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~G 321 (524)
...++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36789999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC
Q 009843 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~ 379 (524)
||+|++++||++++|.|.+.|+||+||+||.|++|.|++++++.|...+..+.+....
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998888887766543
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=217.56 Aligned_cols=186 Identities=24% Similarity=0.327 Sum_probs=139.2
Q ss_pred ccccCCCCC--hhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----------CCCe
Q 009843 13 QTQKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGI 80 (524)
Q Consensus 13 ~~~~~~~~~--~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----------~~~~ 80 (524)
....|..++ +.+.+.+.|++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+.+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred ccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 334455555 88999999998 8999999999999999999999999999999999999999984 4678
Q ss_pred EEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hh
Q 009843 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IH 154 (524)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~ 154 (524)
+||++|+++|+.|+.+.++++ ++....+.+........ ..+..+ .+++++||+.+.. .+.. ..
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~---~~Iiv~Tp~~l~~-----~~~~~~~~ 197 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG---INIIVATPGRLLD-----HMQNTPGF 197 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC---CSEEEECHHHHHH-----HHHHCTTC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC---CCEEEEcHHHHHH-----HHHccCCc
Confidence 999999999999999999885 44555555555443332 222222 5777777765421 1222 12
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHh
Q 009843 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (524)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l 215 (524)
....+++|||||||++.+|| |++.+..+ ...++ +.++++||||+++.+.+.....+
T Consensus 198 ~~~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 198 MYKNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp CCTTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred ccccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 35668999999999999988 77665544 45555 67899999999999877555444
No 70
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=1.2e-25 Score=203.89 Aligned_cols=147 Identities=19% Similarity=0.309 Sum_probs=127.7
Q ss_pred ceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009843 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (524)
Q Consensus 232 l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (524)
+...+...+....++..|.++++..+++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 33333333333448899999999888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 312 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
||||+++++|+|+|++++||++++|.+...|+||+||+||.|++|.|++++++.|...+..+.+...
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999888877766543
No 71
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.4e-25 Score=203.23 Aligned_cols=147 Identities=17% Similarity=0.299 Sum_probs=130.6
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009843 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (524)
Q Consensus 231 ~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (524)
++...+...+ ...++..|.++++...+.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 5 ~i~q~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 5 GLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CeEEEEEECC-hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 3443333333 257889999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc-cHHHHHHHHHhcc
Q 009843 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQ 378 (524)
Q Consensus 311 VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d~~~~~~l~~~~~ 378 (524)
|||||+++++|+|+|++++||++++|+|++.|+||+||+||.|+.|.+++|+++. +...+..+.+...
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999876 4556666665443
No 72
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=205.67 Aligned_cols=150 Identities=21% Similarity=0.375 Sum_probs=121.3
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHhc-CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc
Q 009843 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (524)
Q Consensus 228 ~~~~l~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (524)
..+++.+.+...+. ..++..|.++++.. .+.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++
T Consensus 16 ~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34667666655443 57888899999876 56789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhcc
Q 009843 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (524)
Q Consensus 307 g~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~ 378 (524)
|+++|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+.|.|++|+++.|...+..+.+...
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877777665543
No 73
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=2.1e-25 Score=213.45 Aligned_cols=193 Identities=18% Similarity=0.239 Sum_probs=144.8
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (524)
+...|+++++.+.+.+.|++ +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ++++||++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 44567778999999999988 89999999999999999999999999999999999999998753 468999999
Q ss_pred HHHHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCcc
Q 009843 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~ 160 (524)
+++|+.|+.+.++++ ++.+..+.+.......... +. ..+++++||+.+.. .+. .......++
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~----~~~Iiv~Tp~~l~~-----~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---LK----KCHIAVGSPGRIKQ-----LIELDYLNPGSIR 168 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---TT----SCSEEEECHHHHHH-----HHHTTSSCGGGCC
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---cc----CCCEEEECHHHHHH-----HHhcCCcccccCC
Confidence 999999999999885 4566666666655443221 11 26777777775422 111 122345688
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
++|+||||++.+|| .|++.+. .+...++ +.++++||||+++.+.+.+.. .+.+|..+.
T Consensus 169 ~lViDEah~~~~~~-~~~~~~~---~i~~~~~~~~~~l~lSAT~~~~~~~~~~~--~~~~p~~i~ 227 (230)
T 2oxc_A 169 LFILDEADKLLEEG-SFQEQIN---WIYSSLPASKQMLAVSATYPEFLANALTK--YMRDPTFVR 227 (230)
T ss_dssp EEEESSHHHHHSTT-SSHHHHH---HHHHHSCSSCEEEEEESCCCHHHHHHHTT--TCSSCEEEC
T ss_pred EEEeCCchHhhcCc-chHHHHH---HHHHhCCCCCeEEEEEeccCHHHHHHHHH--HcCCCeEEE
Confidence 99999999999887 3665554 4455666 678999999999887654433 245666553
No 74
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.3e-24 Score=206.23 Aligned_cols=192 Identities=15% Similarity=0.207 Sum_probs=145.3
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCcHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (524)
..|+++++++.+.+.|.+ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 458889999999999998 89999999999999999999999999999999999999999764 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009843 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (524)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (524)
+|+.|+.+.++++ ++.+..+.+.......... +..+. .+++++||+.+.. .+. .......++++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~--~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPGRILA-----LARNKSLNLKHIKHF 162 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSC--CSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCC--CCEEEeCHHHHHH-----HHHhCCCCcccCCEE
Confidence 9999999999886 6777777777665443322 22222 4677777765422 111 12235568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEE
Q 009843 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (524)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~ 223 (524)
|+||||++.++ ++|+.. +..+....+ +.++++||||+++.+.+... ..+.+|..+
T Consensus 163 ViDEah~~~~~-~~~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~p~~i 218 (220)
T 1t6n_A 163 ILDECDKMLEQ-LDMRRD---VQEIFRMTPHEKQVMMFSATLSKEIRPVCR--KFMQDPMEI 218 (220)
T ss_dssp EEESHHHHHSS-HHHHHH---HHHHHHTSCSSSEEEEEESCCCTTTHHHHH--TTCSSCEEE
T ss_pred EEcCHHHHhcc-cCcHHH---HHHHHHhCCCcCeEEEEEeecCHHHHHHHH--HHcCCCeEE
Confidence 99999999874 225544 444555555 67899999999998776333 345566544
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.93 E-value=6.5e-25 Score=212.61 Aligned_cols=194 Identities=24% Similarity=0.304 Sum_probs=148.8
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeC
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~ 85 (524)
.....|+++++.+.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred cccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 345568888999999999998 89999999999999999999999999999999999999998753 45799999
Q ss_pred cHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCc
Q 009843 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (524)
Q Consensus 86 P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (524)
|+++|+.|+.+.++++ ++....+.+.......... +.. ..+++++||+.+.. .+.. ......+
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~I~v~Tp~~l~~-----~l~~~~~~~l~~~ 187 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LAK---KPHIIIATPGRLID-----HLENTKGFNLRAL 187 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HHT---CCSEEEECHHHHHH-----HHHHSTTCCCTTC
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHH-----HHHcCCCcCcccc
Confidence 9999999999998875 6777777776654433221 222 26777777775421 2222 2235668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
+++|+||||++.+|+ |++.+.. +...++ +.++++||||+++.+.+.+... +.+|..+.
T Consensus 188 ~~lViDEah~l~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~v~~~~~~~--l~~p~~i~ 246 (249)
T 3ber_A 188 KYLVMDEADRILNMD--FETEVDK---ILKVIPRDRKTFLFSATMTKKVQKLQRAA--LKNPVKCA 246 (249)
T ss_dssp CEEEECSHHHHHHTT--CHHHHHH---HHHSSCSSSEEEEEESSCCHHHHHHHHHH--CSSCEEEE
T ss_pred CEEEEcChhhhhccC--hHHHHHH---HHHhCCCCCeEEEEeccCCHHHHHHHHHH--CCCCEEEE
Confidence 999999999999986 7766554 444555 7889999999999887755444 45666553
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=4.5e-25 Score=209.99 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=141.4
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc------CCCeEEEeC
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~------~~~~~lvl~ 85 (524)
.....|+++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++. .++++||++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 344567788999999999998 8999999999999999999999999999999999999999985 356899999
Q ss_pred cHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCcc
Q 009843 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (524)
Q Consensus 86 P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~ 160 (524)
|+++|+.|+.+.++++ ++......+......... .+ ...+++++||+.+.. .+. .......++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l~~-----~~~~~~~~~~~~~ 157 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRVFD-----NIQRRRFRTDKIK 157 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHHHH-----HHHTTSSCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHHHH-----HHHhCCcchhhCc
Confidence 9999999999998875 455555555443322211 11 125677777775421 121 123345689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
++|+||||++.+|+ |+..+. .+...++ +.++++||||+++.+.+.+...+ .+|..+.
T Consensus 158 ~iViDEah~~~~~~--~~~~l~---~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i~ 215 (224)
T 1qde_A 158 MFILDEADEMLSSG--FKEQIY---QIFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRIL 215 (224)
T ss_dssp EEEEETHHHHHHTT--CHHHHH---HHHHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEEC
T ss_pred EEEEcChhHHhhhh--hHHHHH---HHHHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 99999999999887 665444 4444554 67899999999998877655544 4565543
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=3.9e-25 Score=212.54 Aligned_cols=194 Identities=19% Similarity=0.246 Sum_probs=139.8
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC------CCeEEEeCc
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (524)
+...|+++++++.+.+.|++ +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 44568888999999999987 89999999999999999999999999999999999999999753 568999999
Q ss_pred HHHHHHHHHHHHHHcC----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccE
Q 009843 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~ 161 (524)
+++|+.|+.+.+++++ +......+...... ....+..+. .+++++||+.+.. .+. .......+++
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~--~~Ilv~Tp~~l~~-----~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEA--PHIVVGTPGRVFD-----MLNRRYLSPKWIKM 176 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CC--CSEEEECHHHHHH-----HHHTTSSCSTTCCE
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCC--CCEEEECHHHHHH-----HHHhCCcCcccCcE
Confidence 9999999999998863 44444443332211 112222222 5676666664321 111 1233456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
+|+||||++.+|| |+..+ ..+...++ +.++++||||+++.+.+.+...+ .+|..+.
T Consensus 177 lViDEah~~~~~~--~~~~l---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i~ 233 (237)
T 3bor_A 177 FVLDEADEMLSRG--FKDQI---YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRIL 233 (237)
T ss_dssp EEEESHHHHHHTT--CHHHH---HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEEC
T ss_pred EEECCchHhhccC--cHHHH---HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEEE
Confidence 9999999999887 65444 44444554 78899999999999877665554 4666543
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=6.5e-25 Score=203.67 Aligned_cols=146 Identities=18% Similarity=0.357 Sum_probs=125.3
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 009843 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (524)
Q Consensus 228 ~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (524)
..+++.+.+...+. ..++..|.++++..+ .++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|
T Consensus 26 ~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g 103 (191)
T 2p6n_A 26 ASLDVIQEVEYVKE-EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 103 (191)
T ss_dssp --CCSEEEEEECCG-GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCcCceEEEEEcCh-HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Confidence 34566666555443 578888999888754 5799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccc-cHHHHHHHHH
Q 009843 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILS 375 (524)
Q Consensus 308 ~~~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~-d~~~~~~l~~ 375 (524)
+.+|||||+++++|+|+|++++||+|++|.+++.|+||+||+||.|+.|.+++|+++. |...+..+.+
T Consensus 104 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~ 172 (191)
T 2p6n_A 104 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKA 172 (191)
T ss_dssp SCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 5555555544
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.92 E-value=2.1e-24 Score=202.59 Aligned_cols=189 Identities=19% Similarity=0.229 Sum_probs=141.2
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---------CCeEEEeCc
Q 009843 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSP 86 (524)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---------~~~~lvl~P 86 (524)
.|+++++++.+.+.|++ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++.. +++++|++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 36678899999999998 89999999999999999999999999999999999999998752 568999999
Q ss_pred HHHHHHHHHHHHHHcC--CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEE
Q 009843 87 LIALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (524)
Q Consensus 87 ~~~L~~q~~~~l~~~g--i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iV 163 (524)
+++|+.|+.+.++++. +......+......... .+.. ..+++++||+.+.. .+. .......++++|
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iV 149 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE---ALLR---GADAVVATPGRALD-----YLRQGVLDLSRVEVAV 149 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHH---HHHH---CCSEEEECHHHHHH-----HHHHTSSCCTTCSEEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHH---HhhC---CCCEEEECHHHHHH-----HHHcCCcchhhceEEE
Confidence 9999999999999863 45555555544332221 1122 25677777765422 111 223356689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEE
Q 009843 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (524)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~ 223 (524)
+||||++.+++ |+..+. .+....+ +.+++++|||+++.+.+..... +.+|..+
T Consensus 150 iDEah~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~p~~i 203 (207)
T 2gxq_A 150 LDEADEMLSMG--FEEEVE---ALLSATPPSRQTLLFSATLPSWAKRLAERY--MKNPVLI 203 (207)
T ss_dssp EESHHHHHHTT--CHHHHH---HHHHTSCTTSEEEEECSSCCHHHHHHHHHH--CSSCEEE
T ss_pred EEChhHhhccc--hHHHHH---HHHHhCCccCeEEEEEEecCHHHHHHHHHH--cCCCeEE
Confidence 99999998876 665544 4455555 6789999999998876644443 4566654
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=212.85 Aligned_cols=189 Identities=22% Similarity=0.238 Sum_probs=136.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc-------CCCeEEEeCcHHHHHH
Q 009843 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALME 92 (524)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~-------~~~~~lvl~P~~~L~~ 92 (524)
+++.+.+.+.|.+ .||..|+++|.++++.+++|+|+++.||||+|||++|++|++. .+.++||++|+++|+.
T Consensus 34 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 34 YKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 3778899999998 7999999999999999999999999999999999999999975 3458999999999999
Q ss_pred HHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h---hhccCCccEEEE
Q 009843 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K---IHSRGLLNLVAI 164 (524)
Q Consensus 93 q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~---~~~~~~l~~iVi 164 (524)
|+.+.++++ ++......+.. ........ ......+++++||+.+ ..+. . ......++++|+
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~I~v~Tp~~l------~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAA---VAAKKFGP--KSSKKFDILVTTPNRL------IYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHH---HHHTTTST--TSCCCCCEEEECHHHH------HHHHHSSSCSCCCTTCCEEEE
T ss_pred HHHHHHHHHhcccCceEEEEecCc---cHHHHhhh--hhcCCCCEEEECHHHH------HHHHHhCCCCcccccCcEEEE
Confidence 999999986 33333322111 11000011 1122356777777654 2222 2 123556899999
Q ss_pred eccccccccC-CCCHHHHHHHHHHHHhC--CCCCEEEEeccCChhHHHHHHHHhCCCCCeEEec
Q 009843 165 DEAHCISSWG-HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (524)
Q Consensus 165 DEaH~i~~~g-~~fr~~~~~l~~l~~~~--~~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~ 225 (524)
||||++.+|+ .+|+..+..+ .... ++.++++||||+++.+.+.+... +.+|..+..
T Consensus 182 DEah~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~SAT~~~~v~~~~~~~--l~~p~~i~~ 240 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASI---FLACTSHKVRRAMFSATFAYDVEQWCKLN--LDNVISVSI 240 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHH---HHHCCCTTCEEEEEESSCCHHHHHHHHHH--SSSCEEEEE
T ss_pred eChHHhcccccccHHHHHHHH---HHhcCCCCcEEEEEeccCCHHHHHHHHHh--CCCCEEEEe
Confidence 9999999987 3577666554 3332 47889999999999887754444 456665543
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=7.5e-25 Score=212.61 Aligned_cols=195 Identities=20% Similarity=0.246 Sum_probs=143.5
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---------------
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------------- 77 (524)
+...|.++++.+.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 44567888899999999987 89999999999999999999999999999999999999998742
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK- 152 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~- 152 (524)
++++||++|+++|+.|+.+.++++ ++......+........ ..+.. ..+++++||+.+.. .+..
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~---~~~Ivv~Tp~~l~~-----~l~~~ 168 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI---REVQM---GCHLLVATPGRLVD-----FIEKN 168 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH---HHHSS---CCSEEEECHHHHHH-----HHHTT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH---HHhCC---CCCEEEECHHHHHH-----HHHcC
Confidence 258999999999999999998875 34555555554433221 11222 36787777775421 1211
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
......++++|+||||++.+|| |++.+..+.... ..+ +.++++||||+++.+.+.....+ .+|..+.
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~-~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEES-NMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSS-CCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred CCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhc-cCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 2235568999999999999987 776665543211 233 57899999999998877555544 4565554
No 82
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.9e-22 Score=218.42 Aligned_cols=320 Identities=21% Similarity=0.199 Sum_probs=225.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009843 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (524)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (524)
+.++.++++|+ .|++.|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++|++||+.|+.|..+.+..
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34566678999 89999999999999998 99999999999999999953 366899999999999998887766
Q ss_pred --cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-------hccC---CccEEEEeccc
Q 009843 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRG---LLNLVAIDEAH 168 (524)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-------~~~~---~l~~iViDEaH 168 (524)
+|+.+..+.++.....+...+. .+|+|+||-.+. +..|... .... .+.++||||||
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay~--------~DIvyGTpgrlg----fDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAYL--------ADVTYVTNSELG----FDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHHT--------SSEEEEEHHHHH----HHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred HhcCCeEEEEeCCCCHHHHHHHcC--------CCEEEECchhhh----hHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 5899988888877655444331 577777765442 1122221 2345 78999999999
Q ss_pred ccc-ccCC------------------------------------------CCH-------------------------HH
Q 009843 169 CIS-SWGH------------------------------------------DFR-------------------------PS 180 (524)
Q Consensus 169 ~i~-~~g~------------------------------------------~fr-------------------------~~ 180 (524)
.++ +.+. +|. ..
T Consensus 213 smLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~L 292 (997)
T 2ipc_A 213 SILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGL 292 (997)
T ss_dssp HHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccc
Confidence 986 2210 110 00
Q ss_pred HH-----HHHHH----HHh--C------------------------C---------------------------------
Q 009843 181 YR-----KLSSL----RNY--L------------------------P--------------------------------- 192 (524)
Q Consensus 181 ~~-----~l~~l----~~~--~------------------------~--------------------------------- 192 (524)
|. .+..+ +.+ + |
T Consensus 293 y~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~Q 372 (997)
T 2ipc_A 293 FSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQ 372 (997)
T ss_dssp HTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHH
Confidence 00 00000 000 0 0
Q ss_pred -----CCCEEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEE--eeCchhhHHHHHHHHHHh--cCCccEEE
Q 009843 193 -----DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIV 263 (524)
Q Consensus 193 -----~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~II 263 (524)
-..+.+||+|+..+. ..+.+..++. ++..+.++|.+..... .......++..+.+.+.. ..+.|+||
T Consensus 373 nyFr~Y~kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLV 448 (997)
T 2ipc_A 373 NFFRLYEKRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLV 448 (997)
T ss_dssp HHHTTSSEEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHhChHheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 014788999987653 4566666654 4455667777644321 223345677777666654 35789999
Q ss_pred EeCccccHHHHHHHHH----------------------------------------------------------------
Q 009843 264 YCLERTTCDELSAYLS---------------------------------------------------------------- 279 (524)
Q Consensus 264 f~~s~~~~e~l~~~L~---------------------------------------------------------------- 279 (524)
.|.|.+..|.|++.|+
T Consensus 449 gT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 528 (997)
T 2ipc_A 449 GTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWE 528 (997)
T ss_dssp ECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999999
Q ss_pred ------------hCCCceEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccccCCCc-------------------
Q 009843 280 ------------AGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDV------------------- 327 (524)
Q Consensus 280 ------------~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VlVaT~a~~~GiD~p~v------------------- 327 (524)
+.|++..++++.....+-+.+-+ .| ...|-|||+++|+|-|+.--
T Consensus 529 ~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAq---AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~ 605 (997)
T 2ipc_A 529 GLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQ---AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRY 605 (997)
T ss_dssp HHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHT---TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTT
T ss_pred ccchhhhhhHHHHcCCCeeeccccchHHHHHHHHh---cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccc
Confidence 56777777777754433222222 23 34699999999999997422
Q ss_pred c-------------------------------------------------------EEEEeCCCCCHHHHHHHHhhcCCC
Q 009843 328 R-------------------------------------------------------LVCHFNIPKSMEAFYQESGRAGRD 352 (524)
Q Consensus 328 ~-------------------------------------------------------~VI~~~~p~s~~~y~Q~~GRagR~ 352 (524)
. +||-...+.|..-=-|-.||+||.
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQ 685 (997)
T 2ipc_A 606 EWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQ 685 (997)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCS
T ss_pred ccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccC
Confidence 1 899999999999999999999999
Q ss_pred CCCceEEEEeccccH
Q 009843 353 QLPSKSLLYYGMDDR 367 (524)
Q Consensus 353 G~~~~~i~~~~~~d~ 367 (524)
|.||.+..|.+.+|.
T Consensus 686 GDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 686 GDPGGSRFYVSFDDD 700 (997)
T ss_dssp SCCCEEEEEEESSSH
T ss_pred CCCCCeEEEEECChH
Confidence 999999999988874
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=216.00 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=140.2
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcC------CCeEEE
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~------~~~~lv 83 (524)
.....|+++++++.+.+.|.. +||..|+++|.++++.++.| +|+++.||||+|||++|++|++.. .+++||
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~li 167 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEE
Confidence 345667888999999999998 89999999999999999987 999999999999999999999853 447999
Q ss_pred eCcHHHHHHHHHHHHHHcC-----CceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h--hhc
Q 009843 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHS 155 (524)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~-~--~~~ 155 (524)
++|+++|+.|+.+.++.++ +......+...... ......+|+++||+.+ ..+. + ...
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~IlV~TP~~l------~~~l~~~~~~~ 232 (300)
T 3fmo_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTV------LDWCSKLKFID 232 (300)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHH------HHHHTTTCCCC
T ss_pred EcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh---------hhcCCCCEEEECHHHH------HHHHHhcCCCC
Confidence 9999999999999888753 34444443322110 0012245666666543 3332 1 233
Q ss_pred cCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeccCChhHHHHHHHHhCCCCCeEEe
Q 009843 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (524)
Q Consensus 156 ~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~l~~~~~~~ 224 (524)
...+++|||||||++.+ +| |+..+. .+...++ +.++++||||+++.+....... +.+|.++.
T Consensus 233 l~~l~~lVlDEad~l~~~~~--~~~~~~---~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~--l~~p~~i~ 296 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIK 296 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTT--HHHHHH---HHHTTSCTTCEEEEEESCCCHHHHHHHHHH--SSSCEEEE
T ss_pred hhhceEEEEeCHHHHhhccC--cHHHHH---HHHHhCCCCCEEEEEeccCCHHHHHHHHHH--CCCCeEEE
Confidence 45689999999999987 55 665544 3444554 6889999999999988755444 45676554
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=3.9e-24 Score=211.73 Aligned_cols=137 Identities=26% Similarity=0.392 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccc
Q 009843 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (524)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~Gi 322 (524)
..++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 57889999999887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHhccC
Q 009843 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (524)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~~~~ 379 (524)
|+|++++||++++|.+.+.|+||+||+||.|++|.|++|+++.|...+..+.+....
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998888887766443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=3.3e-26 Score=208.60 Aligned_cols=147 Identities=23% Similarity=0.292 Sum_probs=130.1
Q ss_pred CcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 009843 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (524)
Q Consensus 230 ~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (524)
+++.+.+...+....++..|.++++...+.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34444444333335677888888887777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEeccccHHHHHHHHHh
Q 009843 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (524)
Q Consensus 310 ~VlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~i~~~~~~d~~~~~~l~~~ 376 (524)
+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++.+.|...+..+.+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRY 148 (170)
Confidence 9999999999999999999999999999999999999999999999999999999887776665543
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.8e-21 Score=208.90 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=62.9
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009843 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~----~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (524)
.|+ ++||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|++|+++.+..++++...+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 899999998755 457899999999999999999999999999999999999999999999998887776655
Q ss_pred c
Q 009843 110 S 110 (524)
Q Consensus 110 ~ 110 (524)
+
T Consensus 83 g 83 (540)
T 2vl7_A 83 G 83 (540)
T ss_dssp -
T ss_pred C
Confidence 4
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.82 E-value=9.5e-19 Score=188.41 Aligned_cols=312 Identities=14% Similarity=0.095 Sum_probs=194.0
Q ss_pred CCCHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc----CCceeEec
Q 009843 38 QFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~----~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~ 109 (524)
++||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|..+.+..+ +++...+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 699999998765 4578999999999999999999999999999999999999999999988876 56665554
Q ss_pred cCCCH---------------------------------HHHHHHH------------HHhhcCCCcccEEEeCcccccCh
Q 009843 110 STQTM---------------------------------QVKTKIY------------EDLDSGKPSLRLLYVTPELTATP 144 (524)
Q Consensus 110 ~~~~~---------------------------------~~~~~~~------------~~l~~~~~~~~ll~~tpe~v~t~ 144 (524)
+.... ....... ...+......+++++++..+..+
T Consensus 83 gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~ 162 (551)
T 3crv_A 83 GKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFID 162 (551)
T ss_dssp CHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCH
T ss_pred cccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCH
Confidence 32110 0000000 00011112357888887776665
Q ss_pred hhHHHHHhhhccCCccEEEEeccccccccCCCC-----------------------------------------------
Q 009843 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF----------------------------------------------- 177 (524)
Q Consensus 145 ~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f----------------------------------------------- 177 (524)
..... ........++||||||.+.+ ..++
T Consensus 163 ~~~~~---~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (551)
T 3crv_A 163 RYREF---IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVE 238 (551)
T ss_dssp HHHTT---SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECS
T ss_pred HHHHh---cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 32111 11112467899999999876 3110
Q ss_pred ------HHHHH-------------------------HHHHHHH----------------------------hCCC--CCE
Q 009843 178 ------RPSYR-------------------------KLSSLRN----------------------------YLPD--VPI 196 (524)
Q Consensus 178 ------r~~~~-------------------------~l~~l~~----------------------------~~~~--~~i 196 (524)
..... .+..+.. .+.+ .++
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~sv 318 (551)
T 3crv_A 239 NVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSI 318 (551)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEE
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceE
Confidence 00000 0100000 1123 579
Q ss_pred EEEeccCChhHHHHHHHHhCCCCCeE-------EeccCCCCcceEEEEee-Cc---------hhhHHHHHHHHHHhcCCc
Q 009843 197 LALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-DL---------LDDAYADLCSVLKANGDT 259 (524)
Q Consensus 197 i~lSAT~~~~~~~~i~~~l~l~~~~~-------~~~~~~~~~l~~~v~~~-~~---------~~~~~~~l~~~l~~~~~~ 259 (524)
|++|||+++ ...+...+++..+.. +...+ ..+....+... +. .....+.+.++++.. ++
T Consensus 319 IltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~g 394 (551)
T 3crv_A 319 ILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-KA 394 (551)
T ss_dssp EEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred EEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-CC
Confidence 999999998 466677888864432 12344 44443332211 10 112223333444444 44
Q ss_pred cEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc--ccccccccCC-----CccEEEE
Q 009843 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRLVCH 332 (524)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT--~a~~~GiD~p-----~v~~VI~ 332 (524)
.++||++|....+.+++. .+..+..-..+++. ...++.|+.+.--|++|| ..|.+|||+| ..+.||.
T Consensus 395 ~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI 468 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVI 468 (551)
T ss_dssp EEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEE
T ss_pred CEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEE
Confidence 799999999999999873 34444443335553 456777754445799998 5999999999 3789999
Q ss_pred eCCCCC---------------------H---------HHHHHHHhhcCCCCCCceEEEEec
Q 009843 333 FNIPKS---------------------M---------EAFYQESGRAGRDQLPSKSLLYYG 363 (524)
Q Consensus 333 ~~~p~s---------------------~---------~~y~Q~~GRagR~G~~~~~i~~~~ 363 (524)
.++|.. . ....|-+||+=|...+--++++.+
T Consensus 469 ~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 529 (551)
T 3crv_A 469 VGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529 (551)
T ss_dssp ESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEES
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEee
Confidence 888741 1 112588899999865544455544
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=162.37 Aligned_cols=157 Identities=23% Similarity=0.272 Sum_probs=97.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC---------CCeEEEeCcHHHHHHH-HHHHHHHc--
Q 009843 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~---------~~~~lvl~P~~~L~~q-~~~~l~~~-- 101 (524)
.+...|+++|.++++.+++++++++.+|||+|||++++++++.. .+++||++|+++|+.| +.+.++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45558999999999999999999999999999999999888742 6799999999999999 55566654
Q ss_pred -CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-------hccCCccEEEEecccccccc
Q 009843 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRGLLNLVAIDEAHCISSW 173 (524)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-------~~~~~l~~iViDEaH~i~~~ 173 (524)
++.+..+.+........ ..+.. ..+++++||+.+.. .+... .....+++|||||||++...
T Consensus 109 ~~~~v~~~~g~~~~~~~~---~~~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISF---PEVVK---SCDIIISTAQILEN-----SLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp TTSCEEECCC---CCCCH---HHHHH---HCSEEEEEHHHHHH-----HHHC-------CCCGGGCSEEEETTC------
T ss_pred cCceEEEEeCCcccchhH---Hhhcc---CCCEEEECHHHHHH-----HHhccCcccccccchhcccEEEEECchhhccC
Confidence 45555554432211100 01111 25677777775422 11111 23456899999999999753
Q ss_pred CCCCHHHHHHHHHHH--Hh---------CCCCCEEEEecc
Q 009843 174 GHDFRPSYRKLSSLR--NY---------LPDVPILALTAT 202 (524)
Q Consensus 174 g~~fr~~~~~l~~l~--~~---------~~~~~ii~lSAT 202 (524)
+ .++..+..+...+ .. .++.++++||||
T Consensus 178 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 178 A-VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred C-cHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 2232222211111 10 167889999998
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=1.3e-17 Score=159.77 Aligned_cols=139 Identities=22% Similarity=0.143 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eeEeccCCCHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (524)
.++++|.+++..+++++++++.+|||+|||++++.++...++.++|++|+++|+.|+.++++++++. +..+.+....
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 6899999999999999999999999999999999888888899999999999999999999998887 6666654321
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCE
Q 009843 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (524)
Q Consensus 117 ~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~i 196 (524)
..+++++|++.+.. ..... ...+++|||||||++.+.+ |. .+...++...+
T Consensus 171 -------------~~~i~v~T~~~l~~------~~~~~-~~~~~llIiDEaH~l~~~~------~~---~i~~~~~~~~~ 221 (237)
T 2fz4_A 171 -------------LKPLTVSTYDSAYV------NAEKL-GNRFMLLIFDEVHHLPAES------YV---QIAQMSIAPFR 221 (237)
T ss_dssp -------------CCSEEEEEHHHHHH------THHHH-TTTCSEEEEECSSCCCTTT------HH---HHHHTCCCSEE
T ss_pred -------------cCCEEEEeHHHHHh------hHHHh-cccCCEEEEECCccCCChH------HH---HHHHhccCCEE
Confidence 25677777664422 11111 2348999999999997643 22 35566777889
Q ss_pred EEEeccCChhH
Q 009843 197 LALTATAAPKV 207 (524)
Q Consensus 197 i~lSAT~~~~~ 207 (524)
++||||+.+..
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998754
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.73 E-value=3e-16 Score=170.53 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=101.1
Q ss_pred CEEEEeccCChhHHHHHHHHhCCCCCeEE--eccCCCCcceEEEEee------Cchh----hHHHHHHHHHHhcCCccEE
Q 009843 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK------DLLD----DAYADLCSVLKANGDTCAI 262 (524)
Q Consensus 195 ~ii~lSAT~~~~~~~~i~~~l~l~~~~~~--~~~~~~~~l~~~v~~~------~~~~----~~~~~l~~~l~~~~~~~~I 262 (524)
.+|++|||+++ ...+...+++. ...+ .+.|+..+....+... +... ...+.|.++++..+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 46899999997 56677888886 3332 3455555543322211 0011 12233444445444 4589
Q ss_pred EEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccccCCC--ccEEEEeCCCCC
Q 009843 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS 338 (524)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~--a~~~GiD~p~--v~~VI~~~~p~s 338 (524)
||++|....+.+++.|+. +... ..-+++..+|..+++.|+ ++-.||++|. .|.+|||+|+ .+.||..++|..
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999988862 2222 455566678999999999 8888999985 9999999986 679999998841
Q ss_pred -------------------H----------HHHHHHHhhcCCCCCCceEEEEec
Q 009843 339 -------------------M----------EAFYQESGRAGRDQLPSKSLLYYG 363 (524)
Q Consensus 339 -------------------~----------~~y~Q~~GRagR~G~~~~~i~~~~ 363 (524)
. ....|-+||+=|.-..--++++.+
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 1 112699999999866544555544
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=1.4e-17 Score=164.09 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCc----eeEec
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFLS 109 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~----~~~~~ 109 (524)
.|+++|.++++.++++++.++.+|||+|||+++++++.. ..+++||++|+++|++|+.+++++++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999998888999999999999999877653 2459999999999999999999987542 23333
Q ss_pred cCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 009843 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (524)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (524)
+...... ......+++++||+.+..... .....++++|+||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 3221110 111346788888876654311 1234589999999999874 23444555
Q ss_pred hC-CCCCEEEEeccCChhH
Q 009843 190 YL-PDVPILALTATAAPKV 207 (524)
Q Consensus 190 ~~-~~~~ii~lSAT~~~~~ 207 (524)
.+ +..++++||||++...
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 4778999999997653
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=8.8e-18 Score=164.05 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEeCccccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEccc
Q 009843 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (524)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VlVaT~a 317 (524)
..|+..|.++++.. .+.++||||+++..++.+...|... |+.+..+||+++.++|..+++.|+++ .++ +|++|.+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46777788877764 6779999999999999999999885 99999999999999999999999998 777 7899999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceE--EEEeccc
Q 009843 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS--LLYYGMD 365 (524)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~~~~--i~~~~~~ 365 (524)
+++|+|++.+++||+||+|+++..|.|++||++|.|+.+.+ +.++..+
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999987765 3444444
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.2e-15 Score=142.16 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEe
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (524)
.++++|.++++.+..|+++++.||||+|||.++.++++.. ...++++.|+++|+.|..+.+.. ++......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 5789999999999999999999999999998877776542 23899999999999999888765 22221000
Q ss_pred ccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc-cccCCCCHHHHHHHHHH
Q 009843 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSL 187 (524)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i-~~~g~~fr~~~~~l~~l 187 (524)
.+.... ..-.......+++++||+. +.++... ....+++||+||||.. .+.+ |. ...+..+
T Consensus 141 ~g~~~~-------~~~~~~~~~~~Ivv~Tpg~------l~~~l~~-~l~~~~~lVlDEah~~~~~~~--~~--~~~l~~i 202 (235)
T 3llm_A 141 CGYSVR-------FESILPRPHASIMFCTVGV------LLRKLEA-GIRGISHVIVDEIHERDINTD--FL--LVVLRDV 202 (235)
T ss_dssp EEEEET-------TEEECCCSSSEEEEEEHHH------HHHHHHH-CCTTCCEEEECCTTSCCHHHH--HH--HHHHHHH
T ss_pred EEEeec-------hhhccCCCCCeEEEECHHH------HHHHHHh-hhcCCcEEEEECCccCCcchH--HH--HHHHHHH
Confidence 000000 0000111235566666543 3333221 3667999999999984 2222 21 1346667
Q ss_pred HHhCCCCCEEEEeccCChhH
Q 009843 188 RNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~ 207 (524)
....++.++++||||++...
T Consensus 203 ~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHH
T ss_pred HhhCCCCeEEEEecCCCHHH
Confidence 77788999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.44 E-value=1.2e-06 Score=94.96 Aligned_cols=78 Identities=18% Similarity=0.091 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHH--HHHHHHHhc-----CCCeEEEeCcHHHHHHHHH
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKT--l~~~lp~l~-----~~~~~lvl~P~~~L~~q~~ 95 (524)
...+...|.+.|+-..-.+.|++|+..++.++.+++.+|+|+||| +.++++.+. .+.++++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 455677777766533347899999999999999999999999999 667777775 2448999999999998876
Q ss_pred HHHHH
Q 009843 96 IGLKE 100 (524)
Q Consensus 96 ~~l~~ 100 (524)
+.+..
T Consensus 214 e~~~~ 218 (608)
T 1w36_D 214 ESLGK 218 (608)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 65543
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.06 E-value=2.3e-05 Score=85.51 Aligned_cols=72 Identities=22% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009843 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d-~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (524)
..+++.|.+|+..++..++ .+++||+|+|||.+.. .-.+..+.++|+++||..-+.+.+++|...+.+..-+
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 4578999999999988776 5899999999996532 2234568899999999999999999998877665443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.88 E-value=0.00011 Score=79.71 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009843 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (524)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (524)
+..+++.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+.+.|++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 346889999999999887778999999999996532 22333 46799999999999999999988877653
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00019 Score=79.94 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009843 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (524)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (524)
+..+++.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+++.+.|+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 346789999999999887778999999999996532 22222 47799999999999999999998876543
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.70 E-value=0.00023 Score=79.11 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (524)
..+++.|.+|+..++.+.-.++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+...|++.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 45789999999999887778999999999996532 33333 36789999999999999999988877654
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.50 E-value=0.00053 Score=71.51 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=46.2
Q ss_pred cCCCCCCHHHHHHHHHHHcC----C-CEEEEcCCCChHHHHHH--HHHhcC-CC-eEEEeCcHHHHHHHHHHH
Q 009843 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALAK-PG-IVLVVSPLIALMENQVIG 97 (524)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g----~-d~lv~apTGsGKTl~~~--lp~l~~-~~-~~lvl~P~~~L~~q~~~~ 97 (524)
..+..+++.|++++..++.. + .+++.||.|+|||.+.. +..+.. +. .+++++||...+....+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 46789999999999987542 3 78999999999996532 222332 33 689999998776554433
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.48 E-value=0.0005 Score=73.64 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH--HHHHh-cCCCeEEEeCcHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALMENQVI 96 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~--~lp~l-~~~~~~lvl~P~~~L~~q~~~ 96 (524)
.+++.|++++..++.++.+++.+|.|+|||... ++-.+ ..+.++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 578999999999998888999999999999643 22222 346789999999887765443
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.94 E-value=0.17 Score=54.58 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHh-cC----CCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AK----PGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l-~~----~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
..+++.|.+|+.. ....++|.|+.|||||.+.. +..+ .. ..+++++++|+..+.+..+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4789999999973 35679999999999997643 2222 22 358999999999999988888763
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.67 E-value=0.0058 Score=59.81 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 009843 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (524)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~~G 321 (524)
.|+..|.++|.. ..+.+++||++..+..+-+...|...|+....+.|.....+ .+ -.++...+.+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCC
Confidence 455555555443 24678999999999999999999999999999999855432 11 124556666668888888
Q ss_pred cc-----CCCccEEEEeCCCCCHHHH-HHHHhhcCCCC----CCceEEEEeccccHHHHHH
Q 009843 322 ID-----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEF 372 (524)
Q Consensus 322 iD-----~p~v~~VI~~~~p~s~~~y-~Q~~GRagR~G----~~~~~i~~~~~~d~~~~~~ 372 (524)
+| ....+.||.||..+++..= +|.+-|+.|.| ++-..+-+...+-.+....
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHH
Confidence 86 5678999999999988874 99898988873 2445666677666554443
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.66 E-value=0.012 Score=52.60 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCChHHHHH
Q 009843 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 41 ~~Q~~~i~~~l---------~g~d~lv~apTGsGKTl~~ 70 (524)
+.|++++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45666655543 3678999999999999654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.43 E-value=0.008 Score=61.58 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=33.3
Q ss_pred EEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.++.|+.|+|||...+- +......+|++|+++++.++.+.+.+
T Consensus 164 ~~I~G~aGsGKTt~I~~--~~~~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS--RVNFEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHH--HCCTTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHH--HhccCCeEEEeCCHHHHHHHHHHhhh
Confidence 57899999999975432 22336779999999999988877754
No 105
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.047 Score=53.56 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
+.++++.+|+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999764
No 106
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.72 E-value=0.099 Score=52.69 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHH----hcC-CCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAK-PGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~----l~~-~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.+.|+|++.+..+...+-+++..+-+.|||......+ +.. +..+++++|+...+....+.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6899999999887555668999999999997654322 223 45799999999888777666554
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.096 Score=52.43 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
+.+++.+|+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46899999999999654
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.14 Score=46.41 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999653
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.30 E-value=0.013 Score=54.46 Aligned_cols=37 Identities=24% Similarity=0.052 Sum_probs=24.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~ 88 (524)
.|.-.++.+|+|+|||...+-- +..++.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3445688899999999654321 223466788887754
No 110
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.11 E-value=0.071 Score=53.89 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeC
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~ 85 (524)
.+.+++.+|+|+|||.....-+-..+...+.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 367999999999999876443333344444433
No 111
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.98 E-value=0.096 Score=51.43 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=32.7
Q ss_pred ccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHH
Q 009843 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~~~l 72 (524)
..+...|.++.-.+.+.+.|++...+...+|. .+.. ....+.+++.+|+|+|||.....
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPH---LFKGNRKPTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGG---GCCTTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHH---HHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 34455566777777777777764311000000 0000 01135699999999999976543
No 112
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.13 Score=49.94 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.9
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999654
No 113
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.76 E-value=0.25 Score=43.46 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
..+++.+|+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999654
No 114
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.75 E-value=0.071 Score=52.79 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCChHHHHHH---HHHhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeE-eccCCCHHHHHHHHH---
Q 009843 53 GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEF-LSSTQTMQVKTKIYE--- 122 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~-~~~~~~~~~~~~~~~--- 122 (524)
|.=+++.|++|+|||...+ ..+...+..+++++. ...|+....... .++...- ..+.....+...+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~--~~v~~~~l~~g~Ls~~e~~~l~~a~~ 123 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDL--TSINMHDLESGRLDDDQWENLAKCFD 123 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHH--HCCCHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHh--hCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 3447888999999995432 122235677888864 334433322221 1222111 112233333322221
Q ss_pred HhhcCCCcccEEE-eCcccccChhhHHHHHhhhccC-CccEEEEeccccccccC------CCCHHHHHHHHHHHHhCCCC
Q 009843 123 DLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYRKLSSLRNYLPDV 194 (524)
Q Consensus 123 ~l~~~~~~~~ll~-~tpe~v~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g------~~fr~~~~~l~~l~~~~~~~ 194 (524)
.+.. ..+.+ -+|. +....+...+..+.... .+++||||-.+.+...+ ...+...+.|..+.+.+ ++
T Consensus 124 ~l~~----~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel-~v 197 (338)
T 4a1f_A 124 HLSQ----KKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL-EI 197 (338)
T ss_dssp HHHH----SCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH-TS
T ss_pred HHhc----CCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc-CC
Confidence 1221 12322 2332 11123334444444443 69999999999885421 12223334444444443 88
Q ss_pred CEEEEeccC
Q 009843 195 PILALTATA 203 (524)
Q Consensus 195 ~ii~lSAT~ 203 (524)
|++++|-.-
T Consensus 198 pVi~lsQl~ 206 (338)
T 4a1f_A 198 PIIALVQLN 206 (338)
T ss_dssp CEEEEEECC
T ss_pred eEEEEEecC
Confidence 898888653
No 115
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.74 E-value=0.081 Score=54.73 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=68.1
Q ss_pred HHHHHHc----CCCEEEEcCCCChHHHHHH-HHH--hc-CCCeEEEeCcHHHHHHHHHHHHH--HcCCceeEe-ccCCCH
Q 009843 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-IPA--LA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFL-SSTQTM 114 (524)
Q Consensus 46 ~i~~~l~----g~d~lv~apTGsGKTl~~~-lp~--l~-~~~~~lvl~P~~~L~~q~~~~l~--~~gi~~~~~-~~~~~~ 114 (524)
.+..++. |.-+++.|++|+|||...+ +.. .. .+..+++++.-.+- .+...++. ..++....+ .+....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 3455543 3457888999999995433 221 12 34478887642221 22233321 233332111 112222
Q ss_pred HHHHHHHH---HhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCC---CCHHHH----HHH
Q 009843 115 QVKTKIYE---DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRPSY----RKL 184 (524)
Q Consensus 115 ~~~~~~~~---~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~fr~~~----~~l 184 (524)
.+...+.. .+.. ..+.+..+..+....+...+........+++||||+.+.+...+. +-...+ +.|
T Consensus 271 ~~~~~~~~a~~~l~~----~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~L 346 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSN----AGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSL 346 (454)
T ss_dssp HHHHHHHHHHHHHHS----SCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 22222211 1211 223332221122223333444444344689999999999864321 111111 223
Q ss_pred HHHHHhCCCCCEEEEec
Q 009843 185 SSLRNYLPDVPILALTA 201 (524)
Q Consensus 185 ~~l~~~~~~~~ii~lSA 201 (524)
..+.+.+ +++++++|-
T Consensus 347 k~lAke~-~i~vi~~sq 362 (454)
T 2r6a_A 347 KALAREL-EVPVIALSQ 362 (454)
T ss_dssp HHHHHHH-TCCEEEEEC
T ss_pred HHHHHHh-CCeEEEEec
Confidence 3333332 778888775
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.65 E-value=0.11 Score=45.61 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357899999999999654
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.56 E-value=0.24 Score=49.40 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
.+++.+|+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 118
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.48 E-value=0.098 Score=55.06 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=27.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
.-.+++|||+|.+...... ....+..+... .+.|+++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~---~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRG---GVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTT---HHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHH---HHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 3568999999999753221 22344444444 4678888888754
No 119
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.45 E-value=0.075 Score=54.82 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=69.6
Q ss_pred HHHHHcC----CCEEEEcCCCChHHHHHH-HH--Hhc-CCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEe-ccCCCH
Q 009843 47 IQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTM 114 (524)
Q Consensus 47 i~~~l~g----~d~lv~apTGsGKTl~~~-lp--~l~-~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~-~~~~~~ 114 (524)
+..++.| .-+++.|++|+|||...+ +. +.. .+..+++++. ...|+...... ..++....+ .+....
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~--~~~i~~~~l~~g~l~~ 267 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCS--EARIDMNRVRLGQLTD 267 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHH--HTTCCTTTCCGGGCCH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhCCCCCH
Confidence 4555533 446888999999995432 22 222 3557888764 33333322211 233332211 222333
Q ss_pred HHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccc--CC--CCH-----HHHHHHH
Q 009843 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GH--DFR-----PSYRKLS 185 (524)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~--g~--~fr-----~~~~~l~ 185 (524)
.+...+...+..-. ...+.+..+.-+....+...+.+......+++||||..+.+... +. .-| ...+.|.
T Consensus 268 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk 346 (444)
T 2q6t_A 268 RDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLK 346 (444)
T ss_dssp HHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 33322222111100 02233322211222234444444443446999999999998643 21 112 1112233
Q ss_pred HHHHhCCCCCEEEEecc
Q 009843 186 SLRNYLPDVPILALTAT 202 (524)
Q Consensus 186 ~l~~~~~~~~ii~lSAT 202 (524)
.+.+.+ ++|+++++-.
T Consensus 347 ~lAke~-~v~vi~lsql 362 (444)
T 2q6t_A 347 ALAREL-GIPIIALSQL 362 (444)
T ss_dssp HHHHHH-TSCEEEEEEC
T ss_pred HHHHHh-CCeEEEEecC
Confidence 333332 7889888754
No 120
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.39 E-value=0.081 Score=52.06 Aligned_cols=54 Identities=17% Similarity=-0.020 Sum_probs=29.2
Q ss_pred cccCCCCChhHHHHHHHHHHcCC--CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 14 TQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~--~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
...|.++.-.+.+.+.|++...+ ..+..++ ......+.+++.+|+|+|||....
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHHH
Confidence 34556666666666666653211 0000000 000122579999999999997654
No 121
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.34 E-value=0.078 Score=58.62 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=64.2
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccccCCCccEEE
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD~p~v~~VI 331 (524)
+.+++|.++|+.-+.++++.+.+. |+.+..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 468999999999998888777653 789999999999999999999999999999999975 44567888888888
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.23 E-value=0.24 Score=49.30 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
+..+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999654
No 123
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.22 E-value=0.13 Score=47.46 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
++.+++.+|+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999654
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.21 E-value=0.11 Score=50.83 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+..+++.+|+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.17 E-value=0.1 Score=49.65 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
..+++.+|+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999997654
No 126
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.16 E-value=0.082 Score=54.58 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.5
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA 74 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (524)
..+++.+|+|+|||.....-+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999997654433
No 127
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.15 E-value=0.1 Score=56.13 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~ 92 (524)
.++.-|.+++..++.- .-.++.|+-|.|||.+.-+.+-...+.++|.+|+.+=+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH
Confidence 5788999999998863 346889999999996654444333456788999876443
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.14 E-value=0.054 Score=51.94 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=30.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHHH
Q 009843 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~d~lv~apTGsGKTl~~~l 72 (524)
..+.++.-.+.....|.+.....- ...+.+... ..++.+++.+|+|+|||.....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPL---KHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHH---HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHh---hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 345556666666666665332100 011222222 2346799999999999976543
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.12 E-value=0.12 Score=44.56 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCChHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~ 69 (524)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999964
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.12 E-value=0.41 Score=46.40 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999754
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.12 E-value=0.19 Score=49.10 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=30.7
Q ss_pred ccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCC--CE-EEEcCCCChHHHHHHH
Q 009843 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR--DC-FCLMPTGGGKSMCYQI 72 (524)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~--d~-lv~apTGsGKTl~~~l 72 (524)
..||...+....+.++...+.+...+++.. ..++ ++ ++.+|+|+|||.....
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l----------------~~~~~~~~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSIT----------------SKGKIPHIILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHH----------------HTTCCCSEEEECSSTTSSHHHHHHH
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHH----------------HcCCCCeEEEeeCcCCCCHHHHHHH
Confidence 345655555566666666666655555421 1332 44 5566799999976543
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.11 E-value=0.33 Score=46.98 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (524)
.++.+++.+|+|+|||.....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 356799999999999976543
No 133
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.10 E-value=0.57 Score=44.96 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
++.+++.+|+|+|||....
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999997654
No 134
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.03 E-value=0.15 Score=52.62 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
+.+++.+|+|+|||+....
T Consensus 168 ~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999976543
No 135
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.03 E-value=0.087 Score=52.06 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHH
Q 009843 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 39 ~r~~Q~~~i~~~l----~g~---d~lv~apTGsGKTl~~~ 71 (524)
+.|||.+++..+. +|+ -+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4578887776543 343 37999999999997643
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.98 E-value=0.86 Score=43.87 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
..+++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36999999999999765
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.80 E-value=0.55 Score=45.84 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=68.2
Q ss_pred HHHHHHc----CCCEEEEcCCCChHHHHH-HHH--HhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEeccC----
Q 009843 46 AIQAVLS----GRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSST---- 111 (524)
Q Consensus 46 ~i~~~l~----g~d~lv~apTGsGKTl~~-~lp--~l~~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~~~~---- 111 (524)
.+..++. |.-+++.|++|+|||... ++. +...+..+++++- ...++....... .++....+...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~--~~i~~~~l~~~~~~l 134 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTA--GSINAQKIKAARRDF 134 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHH--TTCCHHHHHSCHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHH--cCCCHHHHhcCCCCC
Confidence 3455553 345788999999999432 222 2334567888873 333333222211 23321111100
Q ss_pred --CCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCcc--EEEEeccccccccCC-CCH-HH----H
Q 009843 112 --QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWGH-DFR-PS----Y 181 (524)
Q Consensus 112 --~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~~g~-~fr-~~----~ 181 (524)
............+.. ..+.+..+.-+....+...+........++ +||||-.+.+..-+. .-| .. .
T Consensus 135 ~~~~~~~l~~a~~~l~~----~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~ 210 (315)
T 3bh0_A 135 ASEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQIS 210 (315)
T ss_dssp CSSCHHHHHHHHHHHHT----SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhC----CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHH
Confidence 011111111111211 233332221122233444444444444688 999999998854211 112 11 2
Q ss_pred HHHHHHHHhCCCCCEEEEecc
Q 009843 182 RKLSSLRNYLPDVPILALTAT 202 (524)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT 202 (524)
+.|..+.+.+ ++++++++-.
T Consensus 211 ~~Lk~lAk~~-~i~vi~lsql 230 (315)
T 3bh0_A 211 RDLKKMAREL-DVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHHH-TCEEEEEECC
T ss_pred HHHHHHHHHh-CCeEEEEeec
Confidence 2333333332 7778777654
No 138
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.72 E-value=0.2 Score=49.94 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||+...
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999997654
No 139
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.60 E-value=0.14 Score=45.99 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCChHHHHHH-HH--HhcCCCeEEEeCcHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLI 88 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~~ 88 (524)
|+-.++.+|.|+|||...+ +. ....+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 5556889999999997642 22 123466788888874
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.54 E-value=0.48 Score=46.54 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.+|+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 141
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.53 E-value=0.13 Score=47.18 Aligned_cols=37 Identities=19% Similarity=-0.017 Sum_probs=24.2
Q ss_pred CCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~ 89 (524)
|+=.++.+|.|+|||...+-- +..++.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 333468899999999654322 2345778888888653
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.44 E-value=0.28 Score=48.69 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
+..+++.+|+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 143
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.38 E-value=0.049 Score=49.64 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.9
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
-.++.++.|+|||....
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999997543
No 144
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.20 E-value=0.063 Score=58.53 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHH-hc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~-l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.+++.|++++.. .+..++|.|+.|||||.+.. +.- +. ....+++|+.|+..+.+..+++..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 578999999986 35678999999999997643 111 11 246899999999999998888876
No 145
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.10 E-value=0.1 Score=57.45 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH--HHHh-c----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~--lp~l-~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
..+++.|++|+.. .+..++|.|+.|||||.+.. +.-+ . ....+++|+.|+..+.+..+++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999986 35689999999999996543 2222 2 235799999999988887777765
No 146
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.09 E-value=0.47 Score=42.62 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999654
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.97 E-value=1.1 Score=44.25 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=29.8
Q ss_pred cccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCChHHHHH
Q 009843 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g---~d~lv~apTGsGKTl~~ 70 (524)
.|+...+....+.++...+.....|...+ ..+ +-+++.||+|+|||...
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l----------------~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGL----------------SLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHH----------------HHTCCCSEEEEESCTTSSHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHH----------------HhCCCCeEEEEECCCCCCHHHHH
Confidence 34445555555666555565555555421 123 23789999999999654
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.97 E-value=0.9 Score=41.93 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=29.9
Q ss_pred cCCCEEEEcCCCChHHHHH-HHH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009843 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~-~lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (524)
.|.-+++.+|+|+|||... ++. ....++.+++++-... ..+..+.+...|
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcC
Confidence 4566789999999999653 232 2334667787764322 234444454444
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.93 E-value=0.17 Score=47.56 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999997653
No 150
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.89 E-value=0.18 Score=51.17 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=64.0
Q ss_pred cCCccEEEEeCccccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc----ccccCCCcc
Q 009843 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 328 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~----~GiD~p~v~ 328 (524)
..+.++||.++++.-+.++++.+++ .|+.+..+||+.+..+|....+.+..|+.+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3566899999999999999999988 588999999999999988888999999999999997422 124556788
Q ss_pred EEEE
Q 009843 329 LVCH 332 (524)
Q Consensus 329 ~VI~ 332 (524)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8773
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.89 E-value=1 Score=40.97 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 152
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.87 E-value=0.56 Score=46.15 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.6
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
.+++|+||+|.+... ....|..+.+..+....+.++++..
T Consensus 111 ~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp CEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEecCc
Confidence 679999999998541 1244555556655444555555543
No 153
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.1 Score=52.68 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=34.8
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHH
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~d~lv~apTGsGKTl~~~ 71 (524)
+...|.+++-.++....|++..-++-.+| +.+..+ .-.+.+|+.+|+|+|||+.+-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p---e~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHP---ELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 45667777777888888877432211111 122221 123789999999999998653
No 154
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.66 E-value=0.11 Score=46.87 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=24.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHH---hcCCCeEEEeCcHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~ 88 (524)
|+=.++.+|+|+|||...+--+ ..++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4446788999999996543222 23577888888863
No 155
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.53 E-value=0.15 Score=59.48 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH---HHHhcC------CCeEEEeCcHHHHHHHHHHHHHH
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~---lp~l~~------~~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
..+++-|.++|.. .+++++|.|+.|||||.+.. +-.+.. ...++++++|++.+....+++..
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 3689999999986 37899999999999997743 222222 24799999999888877766654
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.48 E-value=0.21 Score=48.78 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
++.+++.+|+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.40 E-value=0.41 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPA 74 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~ 74 (524)
.+.+++.+|+|+|||.....-+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3579999999999997654333
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.38 E-value=0.19 Score=45.50 Aligned_cols=131 Identities=17% Similarity=0.115 Sum_probs=64.7
Q ss_pred CCEEEEcCCCChHHHHHHH---HHhcCCCeEEEeCcHHH-HHHHHHHHHHHcCCceeEeccCCC--HHHHHHHHHHhhcC
Q 009843 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~-L~~q~~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~l~~~ 127 (524)
..+++..++|.|||.+++- -++-.+.+|+|+.-.+. .-..-.+.+..+++.......... .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 4789999999999987653 33445778888843221 000001112222222211111100 0000000
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChh
Q 009843 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (524)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (524)
......-+....+....+.+++||+||+-....+|.--. ..+-.+....|...-+.+|+-..+.
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000011233334444456799999999977666553222 3344445555655666777766554
No 159
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.28 E-value=0.48 Score=44.44 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
.+.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3568999999999997653
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.24 E-value=0.86 Score=44.57 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
..+++.+|+|+|||.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999976543
No 161
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.18 E-value=1.2 Score=44.70 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.4
Q ss_pred CCEEE--EcCCCChHHHHH
Q 009843 54 RDCFC--LMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv--~apTGsGKTl~~ 70 (524)
..+++ .+|+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 34677 799999999654
No 162
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.07 E-value=0.24 Score=45.07 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCChHHHHHH-HHHhcCCCeEEEeC
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVS 85 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l~~~~~~lvl~ 85 (524)
|.-+++.+|+|+|||.... +.. ..++.++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEE
Confidence 4567899999999995443 433 4566777775
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.39 Score=46.74 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCC
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~ 204 (524)
+..+++||||||.+.... ...|....+..|+.-+++|.++-+
T Consensus 81 ~~~kvviIdead~lt~~a------~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA------ANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCHHH------HHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHHHhCHHH------HHHHHHHHhCCCCCeEEEEEECCh
Confidence 447899999999986421 234444555544444555555543
No 164
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.66 E-value=0.29 Score=50.99 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQIPA 74 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~lp~ 74 (524)
+.+++.+|+|+|||+....-+
T Consensus 239 ~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHH
Confidence 569999999999998764433
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.57 E-value=0.66 Score=47.59 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.2
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
..+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997543
No 166
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.34 E-value=1.8 Score=44.37 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=69.8
Q ss_pred HHHHHHc----CCCEEEEcCCCChHHHHHH-H--HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEeccC---C-
Q 009843 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST---Q- 112 (524)
Q Consensus 46 ~i~~~l~----g~d~lv~apTGsGKTl~~~-l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~~~---~- 112 (524)
.+..++. |.-+++.|++|+|||...+ + -+...+..+++++---+ ..|...++.. .++....+..+ .
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 3445553 3447888999999995432 2 22334668888874321 1222233222 23321111100 0
Q ss_pred --CHHHHHHHHHHhhcCCCcccEEE-eCcccccChhhHHHHHhhhccCCcc--EEEEeccccccccC-CCCHH-HH----
Q 009843 113 --TMQVKTKIYEDLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWG-HDFRP-SY---- 181 (524)
Q Consensus 113 --~~~~~~~~~~~l~~~~~~~~ll~-~tpe~v~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~~g-~~fr~-~~---- 181 (524)
...........+.. ..+.+ -+|. +....+...+.+......++ +||||=.+.+..-+ .+-|. .+
T Consensus 265 ~~~~~~l~~a~~~l~~----~~l~i~d~~~-~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~ 339 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN----SNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQIS 339 (444)
T ss_dssp CSCHHHHHHHHHHHHT----SCEEEECCSS-CBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHH
Confidence 11111111122221 23332 2332 22233444444444444689 99999999886422 12222 12
Q ss_pred HHHHHHHHhCCCCCEEEEecc
Q 009843 182 RKLSSLRNYLPDVPILALTAT 202 (524)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT 202 (524)
+.|..+.+.+ ++|++++|-.
T Consensus 340 ~~Lk~lAke~-~v~vi~lsql 359 (444)
T 3bgw_A 340 RDLKKMAREL-DVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHHH-TCEEEEEEEC
T ss_pred HHHHHHHHHh-CCeEEEEecC
Confidence 2333333332 7888888764
No 167
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.29 E-value=0.46 Score=44.05 Aligned_cols=37 Identities=22% Similarity=0.005 Sum_probs=25.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~ 88 (524)
.|+=.++.+|.|+|||...+-- +..++.+++++-|.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 3555678899999999654322 234477888888865
No 168
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.13 E-value=1.5 Score=43.07 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=32.8
Q ss_pred ccccccccccCCCCChhHHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 7 AMQSTSQTQKNKPLHEKEALVKLLRWHF-GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~f-g~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
||...+....+.++...+.+...|+... .. -....+++.||+|+|||....
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHHH
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHHH
Confidence 5666666666666666777777776632 10 122349999999999996543
No 169
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.32 Score=49.90 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=36.8
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHH
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~d~lv~apTGsGKTl~~~ 71 (524)
.+...|.+++-.+++.+.|++..-+.-.+| +.+..+ .-.+.+|+.+|+|+|||+..-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 455778888888888888887432211111 222222 124679999999999997653
No 170
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.95 E-value=0.17 Score=51.76 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=33.4
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHH
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~d~lv~apTGsGKTl~~~ 71 (524)
.+...|.+++-.++....|++..-+.-.+| +.+..+ .-.+.+|+.+|+|+|||+..-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNP---EIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 445567777766777777766432211111 111111 123679999999999998653
No 171
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.72 E-value=0.48 Score=45.70 Aligned_cols=18 Identities=22% Similarity=-0.025 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||....
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997654
No 172
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.51 E-value=1.2 Score=42.31 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.7
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~ 70 (524)
+..|.-+++.+|+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 446677899999999999543
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.50 E-value=2.8 Score=37.96 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=22.2
Q ss_pred cCCCEEEEcCCCChHHHH-HHHHHh--cCCCeEEEeC
Q 009843 52 SGRDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVS 85 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~-~~lp~l--~~~~~~lvl~ 85 (524)
.|.-+++.+|+|+|||.. .++... ..++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356688999999999943 333322 2356677765
No 174
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.40 E-value=1 Score=44.11 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=32.4
Q ss_pred HHHHHHc-----CCCEEEEcCCCChHHHHH-HHHHh-c-C------CCeEEEeCcHHHH-HHHHHHHHHHcCC
Q 009843 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QIPAL-A-K------PGIVLVVSPLIAL-MENQVIGLKEKGI 103 (524)
Q Consensus 46 ~i~~~l~-----g~d~lv~apTGsGKTl~~-~lp~l-~-~------~~~~lvl~P~~~L-~~q~~~~l~~~gi 103 (524)
.+..++. |.-+++.+|+|+|||... ++..- . . ++.+++++--.++ ..+....++.+|+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455553 355789999999999543 33332 1 2 5678888654322 2233333445543
No 175
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.20 E-value=4 Score=41.66 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=26.7
Q ss_pred CEEEEcCCCChHHHHHH-HH-Hhc-CCCeEEEeC--cHHHHHHHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ-IP-ALA-KPGIVLVVS--PLIALMENQVIGLK 99 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp-~l~-~~~~~lvl~--P~~~L~~q~~~~l~ 99 (524)
-+++.+++|+|||.+.. +. .+. ++.+++++. |.+.-+.+|...+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 46788999999996543 22 233 355666655 45554445554443
No 176
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.09 E-value=3.4 Score=42.04 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=27.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeccCChhHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 208 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~ii~lSAT~~~~~~ 208 (524)
...++++||++-.... +.+ ......+..+... .|+.-++.++|+......
T Consensus 178 ~~~DvvIIDTaGr~~~-~~d-~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGY-GEE-TKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp TTCSEEEEEECCCSSS-CCT-THHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred cCCCEEEEECCCCccc-cCC-HHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 3578999999965420 011 1223444444333 344446778888765443
No 177
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.04 E-value=0.56 Score=46.41 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=26.5
Q ss_pred HHHHHc-----CCCEEEEcCCCChHHHHHH-HHHh--c------CCCeEEEeCcHH
Q 009843 47 IQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPAL--A------KPGIVLVVSPLI 88 (524)
Q Consensus 47 i~~~l~-----g~d~lv~apTGsGKTl~~~-lp~l--~------~~~~~lvl~P~~ 88 (524)
+..++. |.-+++.+|+|+|||.... +..- . .++.++++.--.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455553 3457899999999995433 3332 2 356788887543
No 178
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.04 E-value=0.5 Score=52.13 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=39.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHhcCCC
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp~l~~~~ 79 (524)
+...|.+++..++..+.|++..-+.-.+|.+-.-.. +...+.+++.+|+|+|||+.+-.-+-..+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 345677777788888888875544332322110000 012357999999999999865444443333
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.60 E-value=2.8 Score=38.35 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=22.2
Q ss_pred cCCCEEEEcCCCChHHHHHH-HHH--hc------CCCeEEEeC
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ-IPA--LA------KPGIVLVVS 85 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp~--l~------~~~~~lvl~ 85 (524)
.|.-+.+.+|+|+|||.... +.. +. ..+.++++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 35668899999999996543 333 22 145667765
No 180
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.58 E-value=0.69 Score=42.40 Aligned_cols=38 Identities=24% Similarity=0.044 Sum_probs=24.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH---hcCCCeEEEeCcHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~ 89 (524)
.|.=.++.+|.|+|||...+--+ ...+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 35556889999999996432111 223667888888643
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.55 E-value=2.6 Score=41.74 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCCCCHHH-------------HHHHHHHHc------CCCEEEEcCCCChHHHHHH-HH--HhcCCCeE
Q 009843 24 EALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIV 81 (524)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q-------------~~~i~~~l~------g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~ 81 (524)
+.....+.+.||-..+.+.. ...+..++. |+-+++.+|+|+|||...+ +. +...++.+
T Consensus 15 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~v 94 (356)
T 1u94_A 15 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 94 (356)
T ss_dssp HHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 34455566668766543221 134666664 3557899999999995433 22 22345677
Q ss_pred EEeCc
Q 009843 82 LVVSP 86 (524)
Q Consensus 82 lvl~P 86 (524)
+++..
T Consensus 95 lyid~ 99 (356)
T 1u94_A 95 AFIDA 99 (356)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 77765
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=0.61 Score=47.39 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=34.4
Q ss_pred cccccCCCCChhHHHHHHHHHHcCC--CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~--~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
.+...|.+++-.+++.+.|++..-+ ..+--++.-.+ --.+.+|+.+|+|+|||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 4556777777777777777764322 11111111110 123679999999999998653
No 183
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.08 E-value=1 Score=46.95 Aligned_cols=146 Identities=12% Similarity=0.000 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCChHHHHHH-HH--HhcC-CCeEEEeCcHHHHHHHHHHHHH--HcCCceeE---ec-cCCCHHHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IP--ALAK-PGIVLVVSPLIALMENQVIGLK--EKGIAGEF---LS-STQTMQVKTKIYE 122 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp--~l~~-~~~~lvl~P~~~L~~q~~~~l~--~~gi~~~~---~~-~~~~~~~~~~~~~ 122 (524)
|.-+++.|++|+|||...+ +. +... +..+++++---+ ..|...++. ..++.... +. ......+......
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 4457888999999995432 22 2223 557888874222 123333332 23332110 00 0000001111111
Q ss_pred HhhcCCCcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHH-----HHHHHHHHHHhCCCCC
Q 009843 123 DLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-----SYRKLSSLRNYLPDVP 195 (524)
Q Consensus 123 ~l~~~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-----~~~~l~~l~~~~~~~~ 195 (524)
.+... ..+.+. +|.......+...+........+++||||=.+.+..-+. +-+. ..+.|..+.+.+ +++
T Consensus 321 ~~~~~---~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~-~i~ 396 (503)
T 1q57_A 321 ELFGN---DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST-GVV 396 (503)
T ss_dssp HHHTT---TCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred HHhcc---CCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCe
Confidence 12111 223332 221122233444555444445699999999888753211 1121 122333333332 778
Q ss_pred EEEEeccC
Q 009843 196 ILALTATA 203 (524)
Q Consensus 196 ii~lSAT~ 203 (524)
+++++-..
T Consensus 397 vi~~~q~~ 404 (503)
T 1q57_A 397 LVVICHLK 404 (503)
T ss_dssp EEEEEECC
T ss_pred EEEEEcCC
Confidence 87776553
No 184
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.95 E-value=1.7 Score=50.21 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=64.3
Q ss_pred cCCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-ccccccCCCccEE
Q 009843 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD~p~v~~V 330 (524)
..+.+++|.++|+.-+.++++.+.+ .++.+..+++..+..++....+.+.+|+.+|+|+|.. +...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3456899999999999998888874 3678999999999999999999999999999999954 5555777888877
Q ss_pred E
Q 009843 331 C 331 (524)
Q Consensus 331 I 331 (524)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 7
No 185
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.82 E-value=0.55 Score=54.05 Aligned_cols=77 Identities=8% Similarity=0.101 Sum_probs=63.9
Q ss_pred cCCccEEEEeCccccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc-c---cccCCCcc
Q 009843 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-M---GIDRKDVR 328 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~-~---GiD~p~v~ 328 (524)
..+.++||.++++.-+.++++.+++ .|+.+..+||+++..+|....+.+.+|..+|+|+|.-.- . -++..+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3456899999999999999999998 578999999999998888889999999999999996321 1 14566788
Q ss_pred EEEE
Q 009843 329 LVCH 332 (524)
Q Consensus 329 ~VI~ 332 (524)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 186
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.66 E-value=1.4 Score=38.04 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+++||.++++.-+....+.|...|+.+..+++..+..++......+..+. .+++++|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 4678999999999999999999999999999999999999998888888775 67777773
No 187
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.49 E-value=1.4 Score=38.63 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=60.9
Q ss_pred EEEcCCCChHHHHHHHHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEE
Q 009843 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (524)
Q Consensus 57 lv~apTGsGKTl~~~lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll 134 (524)
++..+....|-. .+.-.+. ..+++||.++++..+......|...|+.+..+++..+..++..+...+..+. .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 444444334543 2333333 3578999999999999999999999999999999999999999988888775 7788
Q ss_pred EeCc
Q 009843 135 YVTP 138 (524)
Q Consensus 135 ~~tp 138 (524)
++|.
T Consensus 89 vaT~ 92 (175)
T 2rb4_A 89 ITTN 92 (175)
T ss_dssp EECC
T ss_pred EEec
Confidence 7774
No 188
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.33 E-value=0.089 Score=49.05 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=31.6
Q ss_pred hHHHHHhhhccCCccEEEEeccccccccC---CCCHHHHHHHHHHHHhCCCCCEEEEecc
Q 009843 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWG---HDFRPSYRKLSSLRNYLPDVPILALTAT 202 (524)
Q Consensus 146 ~~~~l~~~~~~~~l~~iViDEaH~i~~~g---~~fr~~~~~l~~l~~~~~~~~ii~lSAT 202 (524)
....+.........+++|+|-...+.... ...+.....|..+.+.+ ++++++++-.
T Consensus 123 ~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-~i~vi~~~q~ 181 (251)
T 2zts_A 123 FLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEA 181 (251)
T ss_dssp HHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECC
T ss_pred HHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-CCCeEEEEEE
Confidence 33444444445568899999988774321 12333334444444443 7777777654
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.18 E-value=4.8 Score=40.01 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHHH-HH--HhcCCCeEEEeCcH
Q 009843 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPL 87 (524)
Q Consensus 45 ~~i~~~l~------g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~ 87 (524)
..+..++. |.-+++.+|+|+|||...+ +. +...++.++++..-
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35666665 2457888999999995432 22 12345677777643
No 190
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.10 E-value=6 Score=38.31 Aligned_cols=16 Identities=25% Similarity=0.048 Sum_probs=13.9
Q ss_pred CCEEEEcCCCChHHHH
Q 009843 54 RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~ 69 (524)
..+++.+|.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5789999999999954
No 191
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.00 E-value=7.5 Score=37.50 Aligned_cols=17 Identities=24% Similarity=-0.123 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHH
Q 009843 53 GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (524)
++.+++.+|.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 56789999999999964
No 192
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.80 E-value=0.69 Score=41.67 Aligned_cols=34 Identities=24% Similarity=0.087 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHH----hcCCCeEEEeCcH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPL 87 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp~----l~~~~~~lvl~P~ 87 (524)
|+=.++.+|.|+|||.- ++-+ ...+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcCCeEEEEccc
Confidence 55578899999999943 2322 2346788888886
No 193
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.77 E-value=0.63 Score=47.46 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=32.4
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHH
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~d~lv~apTGsGKTl~~~ 71 (524)
+...|.+++-.+++...|++..-+.-.+| +.+..+ .-.+.+++.+|+|+|||+..-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQA---DLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 34566777777777777766432111111 111111 123579999999999997653
No 194
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.70 E-value=1.6 Score=40.68 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||....
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999996543
No 195
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.39 E-value=2 Score=47.29 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 457999999999999754
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.38 E-value=6.4 Score=37.46 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=21.8
Q ss_pred cCCCEEEEcCCCChHHHHHH-HHHhc--CCC-eEEEeC
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ-IPALA--KPG-IVLVVS 85 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp~l~--~~~-~~lvl~ 85 (524)
.|.-+++.+|+|+|||.... +.... ..| .++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45667899999999995432 22222 224 677765
No 197
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.34 E-value=3.7 Score=36.56 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeC
Q 009843 63 GGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (524)
Q Consensus 63 GsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~t 137 (524)
...|.. .++-.+.. ++++||.++++.-+....+.|+..|+.+..+++..+..++......+..+. .+++++|
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVAT 111 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEEC
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEc
Confidence 356653 34444433 678999999999999999999999999999999999999998888888876 6676666
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.11 E-value=3.5 Score=37.24 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=51.5
Q ss_pred CccEEEEeCccccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc------cccccCCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~------~~GiD~p~ 326 (524)
+.++||.++++.-++++++.+++. ++.+..++|+.+...+. +.+.++..+|+|+|.-. ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999998887764 78899999999876543 34456778999999631 12244555
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66655
No 199
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.04 E-value=2.5 Score=39.35 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=50.6
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc-----c--ccccCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G--MGIDRK 325 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~-----~--~GiD~p 325 (524)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+...+...+ .+..+|+|+|.-- . .+++..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4557999999999999988877654 78899999998865543322 3578999999631 1 234555
Q ss_pred CccEEE
Q 009843 326 DVRLVC 331 (524)
Q Consensus 326 ~v~~VI 331 (524)
++++||
T Consensus 186 ~~~~lV 191 (249)
T 3ber_A 186 ALKYLV 191 (249)
T ss_dssp TCCEEE
T ss_pred ccCEEE
Confidence 666655
No 200
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.01 E-value=2 Score=37.57 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+++||.++++.-+....+.|...|+.+..+++..+..++......+..+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 3578999999999999999999999999999999999999999988888776 77888774
No 201
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.83 E-value=1.5 Score=48.27 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+|+.+|+|+|||+..-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998654
No 202
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.71 E-value=1.7 Score=37.63 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=52.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+++||.++++.-+......|+..|+.+..+++..+..++..+......+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 4678999999999999999999999999999999999999998888888776 67777663
No 203
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.57 E-value=6.4 Score=35.55 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=54.2
Q ss_pred cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 76 ~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..++.+||.++++.-++...+.|...|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecC
Confidence 35789999999999999999999999999999999999999999999888876 77877774
No 204
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.50 E-value=1.2 Score=46.71 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=54.7
Q ss_pred CccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
++.+||.++++.-+++..+.|.+.|+.+..+|++.+..++..+...+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 35789999999999999999999999999999999999999999999999999999996
No 205
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=86.15 E-value=1.2 Score=47.48 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHH----HhcCC-CeEEEeCcHHHHHHHHHHHHHH
Q 009843 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP----ALAKP-GIVLVVSPLIALMENQVIGLKE 100 (524)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~lp----~l~~~-~~~lvl~P~~~L~~q~~~~l~~ 100 (524)
.+.|+|+..+..+-..+-+++.+|-|.|||.+...- ++..+ ..+++++|+...+....+.++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 478999999988755677899999999999764322 22233 4899999999998887776665
No 206
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=85.30 E-value=1.1 Score=47.73 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred CccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEcc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~VlVaT~ 316 (524)
++.+||.++++.-+++..+.|.+.|+.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45799999999999999999999999999999999999998888888 478899999997
No 207
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.16 E-value=2.9 Score=41.33 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=20.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHhcCCCeEE
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~l~~~~~~l 82 (524)
....+++.+|+|+|||.....-+-..+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3467999999999999876544333333333
No 208
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.15 E-value=2.3 Score=39.31 Aligned_cols=71 Identities=8% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----ccc-cccCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKD 326 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~~~-GiD~p~ 326 (524)
.+..+||.++++.-+.++++.+++ .++.+..++|+.+...+...+. ...+|+|+|.- +.. .+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 355799999999999888777665 4889999999998766544433 25789999962 111 245566
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 66665
No 209
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.14 E-value=1.5 Score=52.95 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHc------CCCEEEEcCCCChHHHHHH---HHHhcCCCeEEEeCcHHH
Q 009843 47 IQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIA 89 (524)
Q Consensus 47 i~~~l~------g~d~lv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~ 89 (524)
+..++. ++.+++.+|+|+|||.... ..+..++++++++..--+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 666666 5789999999999996542 233445778888886543
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.08 E-value=11 Score=36.24 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=20.2
Q ss_pred CCEEEEcCCCChHHHHHH-HHHhc--CCCeEEEeC
Q 009843 54 RDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~-lp~l~--~~~~~lvl~ 85 (524)
+-+++.+|+|+|||.... +.... .+++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346789999999995433 33322 355666654
No 211
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.08 E-value=2.8 Score=40.70 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.4
Q ss_pred HHHHHHcC-----CCEEEEcCCCChHHHHH
Q 009843 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g-----~d~lv~apTGsGKTl~~ 70 (524)
.+..++.| .-+++.+|+|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 34555532 45789999999999543
No 212
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.98 E-value=1.7 Score=44.93 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.3
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||+...
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997653
No 213
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.59 E-value=0.68 Score=39.29 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.6
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (524)
.+..+++.+|+|+|||..+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 557899999999999987643
No 214
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.36 E-value=1.4 Score=42.99 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+++.+|+|+|||...
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3455789999999999543
No 215
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.15 E-value=2 Score=38.13 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHh---cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeC
Q 009843 63 GGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (524)
Q Consensus 63 GsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~t 137 (524)
...|-.. ++-.+ ...+++||.++++.-+....+.|+..|+.+..+++..+...+..+...+..+. .+++++|
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT 103 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVAT 103 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEE
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEc
Confidence 4566532 32222 24678999999999999999999999999999999988888888888888776 6676666
No 216
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.94 E-value=3.4 Score=46.08 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
.++++.+|+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999654
No 217
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.87 E-value=0.72 Score=39.04 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.7
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (524)
..+..+++.+|+|+|||...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34678999999999999754
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.27 E-value=2 Score=39.57 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=21.9
Q ss_pred cCCCEEEEcCCCChHHHHHH-HH--Hh-cCCCeEEEeC
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ-IP--AL-AKPGIVLVVS 85 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~-lp--~l-~~~~~~lvl~ 85 (524)
.|.-+.+.+|+|+|||.... +. .+ ..++.++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56778999999999996443 22 22 3444555554
No 219
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=82.75 E-value=2.9 Score=43.51 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
+.+++.+|+|+|||+....
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999976543
No 220
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.54 E-value=1.9 Score=39.55 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+..++...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 3568999999999999999888763 67889999998876544332 3578999996
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=81.18 E-value=12 Score=38.60 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=19.8
Q ss_pred CEEEEcCCCChHHHHHH-HHHhc--CCCeEEEe
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVV 84 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l~--~~~~~lvl 84 (524)
-+.+++|+|+|||...- |..+. .+|.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46789999999996432 33222 36677665
No 222
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.69 E-value=0.89 Score=46.43 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCCChHHHHH--HHHHh-cCCCeEEEeCcHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALME 92 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~--~lp~l-~~~~~~lvl~P~~~L~~ 92 (524)
...++++.|+||+|||... +++.+ ..+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3468999999999999875 44443 35677888888877754
No 223
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.34 E-value=2.2 Score=43.31 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHc--CCCEEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~~l~--g~d~lv~apTGsGKTl~ 69 (524)
+.+.+..++..++. |.-+++.+|||+|||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 44566677776654 33478999999999954
No 224
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.84 E-value=8.6 Score=45.91 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCCEEEEcCCCChHHHHHH-HH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCC
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (524)
|.-+++.+|+|+|||...+ +. +...++.+++++--.++ .|.. .+..|+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~------------------------ 784 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI------------------------ 784 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG------------------------
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh------------------------
Confidence 3568899999999995433 22 22345677777643222 1111 23333321
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
-++++..+..+ ...+..+........+++||||+...+.
T Consensus 785 -~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 -DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp -GGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -hheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12333333311 2233333333334568999999999886
No 225
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.75 E-value=3 Score=37.91 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=45.8
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc------cccccCCCc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~------~~GiD~p~v 327 (524)
.+.++||.++++.-+.++++.+... ++.+..++|+.+...+... +. ...+|+|+|.-- ...++..++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999988873 7788999998775543322 22 358899999521 123445566
Q ss_pred cEEE
Q 009843 328 RLVC 331 (524)
Q Consensus 328 ~~VI 331 (524)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6655
No 226
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=79.71 E-value=7.1 Score=38.44 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHH-HHH--HhcCCCeEEEeCc
Q 009843 45 DAIQAVLS------GRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSP 86 (524)
Q Consensus 45 ~~i~~~l~------g~d~lv~apTGsGKTl~~-~lp--~l~~~~~~lvl~P 86 (524)
..+..++. |.-+++.+|+|+|||... ++. +...++.++++.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34666666 345789999999999543 232 2234667777764
No 227
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.41 E-value=3.2 Score=45.95 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~lp 73 (524)
++.+++.+|+|+|||.....-
T Consensus 238 ~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 567999999999999765433
No 228
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.40 E-value=6.4 Score=37.89 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=53.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+.+||.++++.-++...+.|...|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~ 86 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATD 86 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEec
Confidence 4789999999999999999999999999999999999999999998888886 77888774
No 229
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=79.16 E-value=2 Score=38.97 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
...+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3345567788888888988999999999999643
No 230
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.02 E-value=4.3 Score=36.06 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----ccc-cccCCCcc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDVR 328 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~~~-GiD~p~v~ 328 (524)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+. ...+|+|+|.- +.. .++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999999875 467888999887554333222 35789999952 111 24455566
Q ss_pred EEE
Q 009843 329 LVC 331 (524)
Q Consensus 329 ~VI 331 (524)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.15 E-value=2.6 Score=47.09 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.+|||+|||....
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 232
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.11 E-value=5 Score=35.64 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=48.5
Q ss_pred CccEEEEeCccccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cccc-ccCCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~~~G-iD~p~ 326 (524)
+.++||.++++.-++++++.+.+. +..+..++|+.+..+.... ..+..+|+|+|.- +..+ ++..+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988887653 6788999999886543221 2457889999962 1122 34455
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66655
No 233
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=77.74 E-value=7.8 Score=38.54 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.++++||.++++.-++...+.|+..|+.+..+++.....++..+...+..+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999999999999988888876 56666664
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.60 E-value=2.7 Score=40.82 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.2
Q ss_pred HHHHcCCCEEEEcCCCChHHHHHH
Q 009843 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 48 ~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
.++..+..+++.+|+|+|||....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344568899999999999996543
No 235
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.55 E-value=7.8 Score=36.21 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=50.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c--cccccCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F--GMGIDRK 325 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~--~~GiD~p 325 (524)
.+.++||.++++.-++++++.+++. +..+..++|+......... +..+ .+|+|+|.- + ..+++..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999998888763 6778889998876544332 2333 899999951 1 1245666
Q ss_pred CccEEE
Q 009843 326 DVRLVC 331 (524)
Q Consensus 326 ~v~~VI 331 (524)
++++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 777766
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.44 E-value=1.3 Score=42.23 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=30.3
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCCHH-HHHHHHHHH--cCCCEEEEcCCCChHHHHHH
Q 009843 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~-Q~~~i~~~l--~g~d~lv~apTGsGKTl~~~ 71 (524)
+...|.+++..+++.+.|++..-+ |+ ..+++..+- -.+.+++.+|+|+|||...-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~----~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILA----PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTH----HHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH----HhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 345678888888888888874321 11 122333321 12349999999999997543
No 237
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.32 E-value=12 Score=37.55 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=21.6
Q ss_pred CCCEEEEcCCCChHHHHHH-HHH--hc------CCCeEEEeCc
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IPA--LA------KPGIVLVVSP 86 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~--l~------~~~~~lvl~P 86 (524)
|.-+.+.+|+|+|||.... +.+ +. ..+.++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3557899999999995433 221 11 2456777753
No 238
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.28 E-value=4.7 Score=38.34 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
...+++.+|+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 239
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=77.13 E-value=6.6 Score=35.94 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=43.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccc-ccCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~-----a~~~G-iD~p~ 326 (524)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+... ..+.+..+..+|+|+|. .+..+ ++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999999888764 567888888865432 23345567789999994 22222 44555
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66655
No 240
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=76.81 E-value=11 Score=38.57 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=19.3
Q ss_pred HHHHH---HcCCCEEEEcCCCChHHHHH
Q 009843 46 AIQAV---LSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~---l~g~d~lv~apTGsGKTl~~ 70 (524)
+|..+ .+|+.+++.+|.|.|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 45554 46888999999999999643
No 241
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=75.97 E-value=3.3 Score=40.31 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=28.1
Q ss_pred CEEEEcCCCChHHHHHH-HH--HhcC--CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009843 55 DCFCLMPTGGGKSMCYQ-IP--ALAK--PGIVLVVSPLIALMENQVIGLKEKGI 103 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp--~l~~--~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (524)
-+++.+|+|+|||...+ +. +... ++.++++..--++-.. .++++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGv 80 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGV 80 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCC
Confidence 47889999999995432 21 1222 6788888765554321 3455554
No 242
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.98 E-value=6.9 Score=35.66 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.7
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+........ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3567999999999999999888764 47889999987654433222 4678999996
No 243
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.93 E-value=5.8 Score=36.65 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=41.6
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
+.++||.++++.-+.++++.++.. ++.+..++|+.+....... .....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE----VQMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH----HSSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH----hCCCCCEEEECH
Confidence 457999999999999988877653 5778889998875543322 235678999996
No 244
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.36 E-value=19 Score=43.79 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=52.4
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHHH-HH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHH
Q 009843 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (524)
Q Consensus 45 ~~i~~~l~------g~d~lv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (524)
..+..++. |.-+++.+|+|+|||...+ +. +...++.+++++--.++-.- ..+.+|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCH----------
Confidence 34666664 3567899999999995433 22 22345678888744332111 133344321
Q ss_pred HHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009843 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (524)
Q Consensus 116 ~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (524)
-++++..|..+ ...+..+........+++||||....+.
T Consensus 436 ---------------~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12233333211 1233333333334568999999999886
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.19 E-value=9.7 Score=37.59 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=28.2
Q ss_pred HHHHHHHc------CCCEEEEcCCCChHHHHHH-HHHh--cCCCeEEEeCcHHH
Q 009843 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLIA 89 (524)
Q Consensus 45 ~~i~~~l~------g~d~lv~apTGsGKTl~~~-lp~l--~~~~~~lvl~P~~~ 89 (524)
..+..++. |.-+++.+|+|+|||...+ +... ..++.++++..-.+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 34566665 3457889999999995332 2221 24677888875433
No 246
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=73.70 E-value=3.4 Score=39.56 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=32.8
Q ss_pred ccccccccccccCCCCChhHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
..||...+....+.++...+.....+.+...- -....+++.||+|+|||...
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHH
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHH
Confidence 35676666666666666666666666653211 01225999999999999654
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=73.63 E-value=17 Score=35.29 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=26.6
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHH-hCCCCCEEEEeccCChhHHH
Q 009843 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQK 209 (524)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~ii~lSAT~~~~~~~ 209 (524)
.+++++|.+-.... ... ....|..+.. ..|+.+++.+.+|.......
T Consensus 212 ~d~vliDtaG~~~~-~~~---l~~eL~~i~ral~~de~llvLDa~t~~~~~~ 259 (328)
T 3e70_C 212 IDVVLIDTAGRSET-NRN---LMDEMKKIARVTKPNLVIFVGDALAGNAIVE 259 (328)
T ss_dssp CSEEEEEECCSCCT-TTC---HHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH
T ss_pred chhhHHhhccchhH-HHH---HHHHHHHHHHHhcCCCCEEEEecHHHHHHHH
Confidence 56788998865422 111 2233433322 34677788888887665444
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.47 E-value=10 Score=37.43 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (524)
...+++.+|+|+|||.....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 249
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.37 E-value=8.3 Score=38.19 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+++||.++++.-++...+.|...++.+..+++.....++..+...+..+. .+++++|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 3679999999999999999999999999999999999999999999998876 67777775
No 250
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=73.33 E-value=2.3 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.+.||+|||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3455678876 577789999999874
No 251
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.26 E-value=2.1 Score=41.48 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=23.5
Q ss_pred cCCCEEEEcCCCChHHHHH-HHHHhcCCCeEEEeCc
Q 009843 52 SGRDCFCLMPTGGGKSMCY-QIPALAKPGIVLVVSP 86 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~-~lp~l~~~~~~lvl~P 86 (524)
.|+-+.+++|+|+|||... ++.-+. .|.++..+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 5677889999999999543 344444 677765443
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.21 E-value=3.3 Score=43.03 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.7
Q ss_pred HHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 46 AIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 46 ~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
+..++..+.++++.+|+|+|||....
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHH
Confidence 44445678899999999999997654
No 253
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=72.72 E-value=9.5 Score=36.92 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.++++||.++++.-++...+.|+..|..+..+++..+..++..+...+..+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 3668999999999999999999999999999999999999998888888775 66766663
No 254
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=72.36 E-value=9 Score=37.56 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.+++||.++++.-++...+.|+..++.+..+++..+..++..+...+..+. .+++++|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 678999999999999999999999999999999999999999999998876 66777764
No 255
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=72.36 E-value=9.7 Score=37.40 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+++||.++++.-+....+.|+..|+.+..+++.....++..+...+..+. .+++++|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 4689999999999999999999999999999999999999999888888776 67777774
No 256
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=72.20 E-value=2.7 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.++||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678876 577899999999874
No 257
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.00 E-value=9.2 Score=37.78 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
..+++||.++++.-++...+.|+..|+.+..+++.....++..+...+..+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 3678999999999999999999999999999999999999999988888776 67777774
No 258
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=71.66 E-value=2.9 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
++.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999998999999999999999889999864
No 259
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.58 E-value=13 Score=29.33 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=40.6
Q ss_pred EEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009843 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (524)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~Vl 312 (524)
.+||........++...++..|..++.++++.+.+.|.+-++.|....++|-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 3566666666777888888889999999999999888888888887655543
No 260
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=71.30 E-value=5.7 Score=41.04 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (524)
.|....+.+-||+|||+...--+-..++.+|||+|....+.+..+.|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 34567889999999997643333334677999999999999999999985
No 261
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.16 E-value=3.3 Score=37.50 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
.+.++||.++++.-+.++++.+... ++.+..++|+.+..++... + ...+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECH
Confidence 3458999999999999998887753 6788999998765443322 2 2378999995
No 262
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=71.13 E-value=3 Score=33.27 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~ 294 (524)
.+.++++||.+-..+...+..|++.|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 45689999999888999999999999999999998753
No 263
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.96 E-value=2.9 Score=32.74 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
++.++++||.+-..+...+..|++.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999889999864
No 264
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.75 E-value=2.8 Score=42.76 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=34.4
Q ss_pred cccccCCCCChhHHHHHHHHHHcCC--CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 009843 12 SQTQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~--~~~r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
.+...|.+++..+++...|++..-+ ..+--++...+ --.+.+|+.+|+|+|||+..-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 4556677887778887777764211 11111111110 123679999999999998653
No 265
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.56 E-value=22 Score=36.94 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=22.8
Q ss_pred cCCCEEEEcCCCChHHHHH-HHHHh--cCCCeEEEeCcH
Q 009843 52 SGRDCFCLMPTGGGKSMCY-QIPAL--AKPGIVLVVSPL 87 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~-~lp~l--~~~~~~lvl~P~ 87 (524)
.|.-+++.+|+|+|||... ++..+ ..+..++++++-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4566889999999999533 22222 234467777653
No 266
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.53 E-value=3.1 Score=41.08 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=18.6
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.+.||+|||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678876 577899999999874
No 267
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.45 E-value=2.9 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.+.||+|||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445567876 577899999999874
No 268
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.21 E-value=3.2 Score=41.28 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.+.||+|||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445667876 577899999999874
No 269
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.91 E-value=3.3 Score=40.85 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.4
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.++||+|||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345667876 577889999999874
No 270
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=69.76 E-value=3.1 Score=41.48 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.+.||+|||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445678876 577889999999764
No 271
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.72 E-value=11 Score=37.41 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.+++||.++++.-++...+.|...|+.+..+++.....++..+...+..+. .+++++|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 578999999999999999999999999999999999999999999888876 67777775
No 272
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=69.64 E-value=3.5 Score=32.74 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
++.++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4568999999988899999999999999888888863
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.61 E-value=3 Score=40.96 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=14.0
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
+-+++.+|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999654
No 274
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=69.58 E-value=3.4 Score=40.47 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=20.6
Q ss_pred HHHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 45 DAIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 45 ~~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
..+..+++|.+ +++.++||+|||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788987 577899999999774
No 275
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.15 E-value=3.3 Score=41.02 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.+.||+|||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4456678877 477789999999874
No 276
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=69.15 E-value=3.5 Score=38.52 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (524)
.+..+++.+|+|+|||.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 457899999999999976543
No 277
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=69.09 E-value=3.1 Score=41.15 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=18.2
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
+..+++|.+ +++.++||+|||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 344567876 577899999999764
No 278
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=68.84 E-value=3.2 Score=41.05 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.++||+|||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 455667876 577889999999874
No 279
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=68.69 E-value=3.3 Score=40.85 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.++||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678876 577889999999764
No 280
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=68.67 E-value=3.6 Score=40.94 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.+.||+|||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678876 577889999999764
No 281
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=68.55 E-value=3.4 Score=40.97 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
+++.+++|.+ +++.+.||+|||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3455678877 477789999999774
No 282
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=67.13 E-value=3.4 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.+.||+|||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3455667876 577889999999764
No 283
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=67.09 E-value=3.7 Score=40.95 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +++.+.||+|||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 344667876 577889999999774
No 284
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=67.09 E-value=3.6 Score=41.14 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +++.+.||+|||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455678876 577899999999874
No 285
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=67.00 E-value=3.7 Score=41.40 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.++.+++|.+ +|+.+.||+|||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3455678876 577889999999874
No 286
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.89 E-value=4.3 Score=40.91 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~~ 71 (524)
.+..+++|.+ +++.+.||+|||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4666778887 4778899999998753
No 287
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.82 E-value=2.7 Score=40.26 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.+|+|+|||....
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997653
No 288
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=66.64 E-value=19 Score=38.64 Aligned_cols=83 Identities=29% Similarity=0.236 Sum_probs=64.9
Q ss_pred cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhc
Q 009843 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (524)
Q Consensus 76 ~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~ 155 (524)
..+.++||.++++.-++...+.|+..|+++..+++.....++..+...+..+. ++++++|... ..| .+
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l--~~G--------lD 510 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLL--REG--------LD 510 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCC--STT--------CC
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchh--hCC--------cc
Confidence 35779999999999999999999999999999999999999988888888776 6777776532 122 12
Q ss_pred cCCccEEEEeccccc
Q 009843 156 RGLLNLVAIDEAHCI 170 (524)
Q Consensus 156 ~~~l~~iViDEaH~i 170 (524)
...++++|+=+++..
T Consensus 511 ip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 511 IPEVSLVAILDADKE 525 (661)
T ss_dssp CTTEEEEEETTTTCC
T ss_pred cCCCCEEEEeCcccc
Confidence 234778888777653
No 289
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=66.60 E-value=20 Score=38.62 Aligned_cols=82 Identities=24% Similarity=0.212 Sum_probs=63.8
Q ss_pred cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhc
Q 009843 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (524)
Q Consensus 76 ~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~ 155 (524)
..+.++||.++++.-++...+.|...|+++..+++.....++..+...+..+. ++++++|.-. ..| .+
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l--~~G--------lD 504 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLL--REG--------LD 504 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCC--CTT--------CC
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChh--hcC--------cc
Confidence 35789999999999999999999999999999999999999999988888776 7787776422 222 12
Q ss_pred cCCccEEEEecccc
Q 009843 156 RGLLNLVAIDEAHC 169 (524)
Q Consensus 156 ~~~l~~iViDEaH~ 169 (524)
...++++|+=+++.
T Consensus 505 ip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 505 IPEVSLVAILDADK 518 (664)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCCEEEEeCCcc
Confidence 23467777766654
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.57 E-value=4 Score=39.66 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.1
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-+++.+|||+|||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 3678899999999654
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=66.36 E-value=89 Score=29.51 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCCEEEEcCCCChHHHHH-HHHHhc--CCCeEEEeC
Q 009843 53 GRDCFCLMPTGGGKSMCY-QIPALA--KPGIVLVVS 85 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~-~lp~l~--~~~~~lvl~ 85 (524)
++-+.+.+++|+|||... .+..+. .+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 445667799999999543 333322 356666654
No 292
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.13 E-value=4.2 Score=41.05 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred HHHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 45 DAIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 45 ~~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
..+..+++|.+ +++.+.||+|||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677888987 577789999999874
No 293
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=66.05 E-value=5.9 Score=41.18 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=47.4
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc-----cc-c-cCCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~~-----~G-i-D~p~ 326 (524)
+.++||.++++.-+.++.+.+... ++.+..+||+.+...+...+. ...+|+|+|.-.- .| + +..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 668999999999999888888764 899999999987654332221 2478999996321 22 3 5667
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=65.86 E-value=3.1 Score=43.39 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCHHHHHHHHH-HHcCCCEEEEcCCCChHHHH
Q 009843 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 39 ~r~~Q~~~i~~-~l~g~d~lv~apTGsGKTl~ 69 (524)
+.+.+.+-+.. +..|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45555555544 45678899999999999954
No 295
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.56 E-value=4.2 Score=39.40 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHH
Q 009843 56 CFCLMPTGGGKSMCY 70 (524)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (524)
+++.+|||+|||...
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678899999999654
No 296
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.48 E-value=27 Score=32.16 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.-+++.+|+|+|||....
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997654
No 297
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.37 E-value=5.3 Score=32.76 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=32.1
Q ss_pred ccEEEEe-CccccHHHHHHHHHhCCCceEEEcCCCCHH
Q 009843 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDK 295 (524)
Q Consensus 259 ~~~IIf~-~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~ 295 (524)
.++|||| .+-..+..++..|+..|+++..+.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 577778899999999999999999998653
No 298
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.22 E-value=4.5 Score=41.30 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
++.+++|.+ +|+.+.||+|||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344567876 577899999999874
No 299
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=65.16 E-value=5.4 Score=41.41 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=49.1
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-cc----cc-c-cCCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG----MG-I-DRKD 326 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~----~G-i-D~p~ 326 (524)
+.++||.++++.-+.++.+.+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +. .+ + +..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777664 899999999986554322221 24789999963 21 12 2 4556
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77777
No 300
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=65.14 E-value=4.2 Score=31.35 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.2
Q ss_pred ccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
.++++||.+-..+...+..|++.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999988899999999999999878889875
No 301
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=65.01 E-value=3.9 Score=35.79 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|+-+.+++|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999654
No 302
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=64.79 E-value=9.9 Score=28.44 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.9
Q ss_pred cCCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCC
Q 009843 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (524)
.++.++++||.+-..+...+..|++.|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 35678999999988899999999999986 5455 7754
No 303
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=64.59 E-value=4.2 Score=40.27 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=17.1
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~ 69 (524)
+..|..+++.+|||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44788999999999999964
No 304
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.48 E-value=10 Score=45.30 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=55.7
Q ss_pred CCCEEEEcCCCChHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCC
Q 009843 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (524)
|+-+.+.+|.|+|||...+- .+...++.++++.+-.+|-... ++++|+...-
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~---------------------- 1485 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN---------------------- 1485 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH----------------------
Confidence 35689999999999976432 2234588999998877664443 5566654322
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009843 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (524)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (524)
+++.-|+.- ...+..+..+...+.+++||||.+-.+..
T Consensus 1486 ---l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1486 ---LLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---CEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ---eEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 333333211 11233334455556689999999887754
No 305
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.32 E-value=9.1 Score=42.23 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=47.1
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-cc----cc-c-cCCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG----MG-I-DRKD 326 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~----~G-i-D~p~ 326 (524)
+.++||.++++.-+.++.+.+++. ++.+..+||+.+...+...+ .+..+|+|+|.- +. .+ + ...+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV----IEDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH----HHTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh----hCCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988877764 89999999998765443222 135789999953 21 12 2 4556
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77777
No 306
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=64.26 E-value=32 Score=32.50 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=19.5
Q ss_pred CEEEEcCCCChHHHHHHHHHhcCCCeEEEeCc
Q 009843 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P 86 (524)
-+++.||+|+|||.....-+-...+..++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47889999999996543222122234455554
No 307
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.25 E-value=26 Score=35.22 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.+.+||.++++.-+....+.|...|+.+..+++.....++..+...+..+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 445999999999999999999999999999999999999999999998876 67777775
No 308
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=64.19 E-value=3.9 Score=40.65 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=19.8
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
.+..+++|.+ +++.+.||+|||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566788876 577789999999874
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.83 E-value=4.2 Score=36.24 Aligned_cols=20 Identities=20% Similarity=0.085 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.++.+++.+|+|+|||....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56788999999999997654
No 310
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=63.55 E-value=4 Score=36.45 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 311
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=63.24 E-value=4.6 Score=33.04 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=32.3
Q ss_pred CCccEEEEeCcccc--HHHHHHHHHhCCCceEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~--~e~l~~~L~~~g~~~~~~h~~l~~ 294 (524)
++.++||||.+-.. +..++..|+..|+.+..+.||+..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 35689999999877 899999999999998888898653
No 312
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=63.17 E-value=8.2 Score=34.99 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCChHHHHH
Q 009843 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g----~d~lv~apTGsGKTl~~ 70 (524)
...+...|+- -| -.|-.+ ..++..++++ +.+++.+|.|+|||..+
T Consensus 27 w~~I~~~l~y-q~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRY-QQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHH-TT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHH-cC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4455555552 13 234444 4556666655 24889999999999653
No 313
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.68 E-value=6.8 Score=37.00 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHcCCCCCCHHHHH-HHHHHHcCC-----CEEEEcCCCChHHHHHH
Q 009843 22 EKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r~~Q~~-~i~~~l~g~-----d~lv~apTGsGKTl~~~ 71 (524)
-.+.+...|+- -|+ .+.+-. ++..+++++ .+++.+|+|+|||+.+.
T Consensus 71 ~~n~i~~~l~~-qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILEL-NGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHH-TTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHH-cCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44566666654 454 465543 466677764 48999999999997654
No 314
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=66.55 E-value=1.6 Score=38.05 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=47.6
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeC
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~t 137 (524)
.+++||.++++.-+....+.|+..|+.+..+++..+..++......+..+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999999999999999999999888888877777777665 5565555
No 315
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=62.41 E-value=4 Score=40.83 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=22.8
Q ss_pred CHHHHHHHH--------HHHcCCC--EEEEcCCCChHHHHH
Q 009843 40 RDKQLDAIQ--------AVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 40 r~~Q~~~i~--------~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
..-|.++.+ .+++|.+ +++.+.||+|||.+.
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345777765 4567876 577899999999774
No 316
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=62.36 E-value=5.9 Score=39.55 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHH---HhcCCCeEEEeCcHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~ 89 (524)
.+.++++.+|||+|||.....- ....++.++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4668999999999999653221 2234667777767544
No 317
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.25 E-value=4.1 Score=40.21 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.4
Q ss_pred HHHHHHcCCC--EEEEcCCCChHHHHHH
Q 009843 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 46 ~i~~~l~g~d--~lv~apTGsGKTl~~~ 71 (524)
.++.+++|.+ +++.+.||+|||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4455567876 5778999999998753
No 318
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.24 E-value=4.1 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCChHHHHHH
Q 009843 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 47 i~~~l~g~d--~lv~apTGsGKTl~~~ 71 (524)
++.+++|.+ +++.+.||+|||.+..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344567876 5778999999998753
No 319
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=62.01 E-value=3.7 Score=38.67 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=15.7
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~ 69 (524)
..|.-+++.+|||+|||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 4566789999999999954
No 320
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=61.83 E-value=1.2e+02 Score=30.48 Aligned_cols=41 Identities=27% Similarity=0.180 Sum_probs=23.7
Q ss_pred CEEEEcCCCChHHHHHH-HH-Hhc-C-CCeEEEeC--cHHHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ-IP-ALA-K-PGIVLVVS--PLIALMENQV 95 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp-~l~-~-~~~~lvl~--P~~~L~~q~~ 95 (524)
-+++.+++|+|||.+.. +. .+. + +.+++++. |.+....++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 46677999999996543 22 222 3 55666654 4444444443
No 321
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=61.54 E-value=9.4 Score=32.17 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCC-ceEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~ 293 (524)
.+.++||||.+-..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998889999999999999 5889999984
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.52 E-value=4.8 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|+-+++.+|+|+|||....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35567889999999996543
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.34 E-value=73 Score=32.06 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=23.5
Q ss_pred CEEEEcCCCChHHHHHH-HHHh-c-CCCeEEEeC--cHHHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPAL-A-KPGIVLVVS--PLIALMENQV 95 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l-~-~~~~~lvl~--P~~~L~~q~~ 95 (524)
-+.+.+++|+|||.... +... . .+++++++. +.+....+|.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL 145 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQL 145 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHH
Confidence 46677999999996543 3322 2 355666654 3344444433
No 324
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=61.00 E-value=7.3 Score=44.52 Aligned_cols=73 Identities=8% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CC----ceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-cccccc-CCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKD 326 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD-~p~ 326 (524)
.+.++||.++|+.-+.++++.++.. ++ .+..+||+.+..++....+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3567999999999999988888643 56 88999999998887777777666 899999973 211121 446
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 176 l~~lV 180 (1054)
T 1gku_B 176 FDFIF 180 (1054)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77766
No 325
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=60.89 E-value=92 Score=32.11 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=19.9
Q ss_pred CEEEEcCCCChHHHHHH-HH-Hhc-CCCeEEEeCc
Q 009843 55 DCFCLMPTGGGKSMCYQ-IP-ALA-KPGIVLVVSP 86 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp-~l~-~~~~~lvl~P 86 (524)
.+++++++|+|||.... +. .+. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 36788999999996543 22 222 2556666653
No 326
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=60.85 E-value=4.7 Score=39.44 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.0
Q ss_pred HHcCCCEEEEcCCCChHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~ 69 (524)
+..|..+.+.+|||+|||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 327
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.72 E-value=8 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
..+++.+|+|+|||....
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999997653
No 328
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.53 E-value=4.2 Score=39.95 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||....
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999997654
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=60.29 E-value=5.1 Score=34.91 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
++.+++.+|+|+|||....
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999997654
No 330
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=59.94 E-value=3.7 Score=38.42 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
.+.+++.+|+|+|||....
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997653
No 331
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.64 E-value=11 Score=47.91 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHcCCCCCCHHHHH-HHH---HHHcCCCEEEEcCCCChHHHHHHH
Q 009843 22 EKEALVKLLRWHFGHAQFRDKQLD-AIQ---AVLSGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r~~Q~~-~i~---~~l~g~d~lv~apTGsGKTl~~~l 72 (524)
+.+.+...+++ .|+ .+.+.+.. +++ .+...+.++++||||+|||.|+..
T Consensus 873 l~~ai~~~~~~-~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQ-RHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHH-TTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHH-cCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34455555555 576 45555443 332 233456789999999999999853
No 332
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=59.61 E-value=4.8 Score=38.79 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.+..+++.+|+|+|||....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35689999999999997654
No 333
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=59.55 E-value=4.6 Score=40.22 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=24.1
Q ss_pred cCCCC---CCHHHHHHH-------HHHHcCCC--EEEEcCCCChHHHHH
Q 009843 34 FGHAQ---FRDKQLDAI-------QAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 34 fg~~~---~r~~Q~~~i-------~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
|.|+. +..-|.++. ..+++|.+ +++.+.||+|||.+.
T Consensus 85 F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 85 FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp EECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred eeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 55542 233565554 34457776 577889999999774
No 334
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=59.49 E-value=6.2 Score=38.44 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.5
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-+++.+|||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999654
No 335
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=59.43 E-value=6.3 Score=39.02 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=16.9
Q ss_pred HHH-cCCC--EEEEcCCCChHHHHH
Q 009843 49 AVL-SGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 49 ~~l-~g~d--~lv~apTGsGKTl~~ 70 (524)
.++ .|.+ +++.+.||+|||.+.
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEE
Confidence 344 3766 588999999999774
No 336
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.40 E-value=3.7 Score=37.04 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCChHHHH
Q 009843 53 GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (524)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999854
No 337
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=59.39 E-value=6.9 Score=33.01 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCccEEEEeCcc--ccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~--~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
.+.++||||.+- ..+...+..|+..|+.+..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356899999987 5789999999999999999999864
No 338
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=59.30 E-value=7.6 Score=32.37 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCC-ceEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~~ 294 (524)
++.++||||.+-..+...+..|++.|+ ++..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 456899999999999999999999998 58889999743
No 339
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.29 E-value=11 Score=47.21 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHcCCCCCCHHHH-HHH---HHHHcCCCEEEEcCCCChHHHHHHHH
Q 009843 22 EKEALVKLLRWHFGHAQFRDKQL-DAI---QAVLSGRDCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~r~~Q~-~~i---~~~l~g~d~lv~apTGsGKTl~~~lp 73 (524)
+.+.+.+.+.+ .|+. +.+.+. +++ +.+...+.++++||||+|||.++..-
T Consensus 890 l~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 44455555555 5764 555543 233 33445678999999999999987643
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=58.87 E-value=9.8 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
.+++++.+|+|+|||....
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3679999999999997654
No 341
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=58.86 E-value=21 Score=37.54 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.++.+||.++++.-++...+.|+.. ++.+..+++......+..+...+..+. .+++++|.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~ 349 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 349 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcc
Confidence 3679999999999999999999886 899999999999999999999998876 67777765
No 342
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=58.47 E-value=6.1 Score=31.21 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~ 294 (524)
.+.++||||.+-..+...+..|...|+. +..+.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 4567999999988899999999999995 8888888643
No 343
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.22 E-value=9.9 Score=32.52 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~l 72 (524)
+..+++.+|.|+|||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 344
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=58.06 E-value=35 Score=35.48 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.++.+||.++++.-++...+.|+.. ++.+..+++......+..+...+..+. .+++++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcc
Confidence 4679999999999999999998886 899999999999999999999998876 67777775
No 345
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=57.91 E-value=21 Score=39.22 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=44.0
Q ss_pred hcCCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 255 ANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 255 ~~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
...+..++|.++|+.-|.+.++.+.. .|+.+..+.||++.+.|.... ..+|+|+|+.
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 34456799999999988877766543 589999999999987655433 3799999974
No 346
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=57.54 E-value=4.8 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.4
Q ss_pred EEEEcCCCChHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (524)
+++.+|+|+|||....
T Consensus 4 I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997654
No 347
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.49 E-value=6.2 Score=34.93 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.+|+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5666788999999999654
No 348
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.26 E-value=10 Score=32.66 Aligned_cols=19 Identities=21% Similarity=0.022 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
++-+++.+++|+|||....
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4457899999999997654
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=57.18 E-value=6 Score=36.92 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.6
Q ss_pred EEEEcCCCChHHHHH
Q 009843 56 CFCLMPTGGGKSMCY 70 (524)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (524)
+++.+|||+|||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 578999999999654
No 350
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.04 E-value=25 Score=38.70 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=44.6
Q ss_pred HhcCCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 254 ~~~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
....+..++|.++|+.-|.+.++.+.. .|+.+..+.||++.++|.... ..+|+|+|+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 434556799999999988887776643 589999999999987665442 378999996
No 351
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=56.87 E-value=7.3 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~ 294 (524)
++.+++|||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4568999999988899999999999985 8889998754
No 352
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.59 E-value=12 Score=37.14 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.+++||.++++.-++...+.|...++.+..+++.....++..+...+..+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 568999999999999999999999999999999999999988888888776 66777765
No 353
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=56.58 E-value=11 Score=29.99 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.5
Q ss_pred cCCccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCC
Q 009843 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
.++.+++|||.+-..+...+..|+..|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 35678999999988899999999999986677889975
No 354
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.55 E-value=7.6 Score=33.66 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.++.+++.+++|+|||....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999997654
No 355
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.48 E-value=5.7 Score=35.19 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~ 71 (524)
..|.-+.+.+|+|+|||...-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356678899999999996543
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=56.27 E-value=7.5 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=16.2
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~ 70 (524)
+..|+-+.+++|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346788899999999999643
No 357
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=55.97 E-value=8 Score=31.76 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.7
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~ 294 (524)
.+.++||||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4568999999988899999999999985 8889999754
No 358
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.75 E-value=7.6 Score=34.05 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=13.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~ 70 (524)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44678999999999654
No 359
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.51 E-value=6.7 Score=37.60 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=47.1
Q ss_pred CccEEEEeCccccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc------c-ccccCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDRK 325 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~------~-~GiD~p 325 (524)
+..+||.++|+.-+.++++.+... ++.+..++++.....+ .....+|+|+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988877753 4677788877653221 14567899999632 1 245667
Q ss_pred CccEEEE
Q 009843 326 DVRLVCH 332 (524)
Q Consensus 326 ~v~~VI~ 332 (524)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777763
No 360
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=55.47 E-value=3.1 Score=38.34 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=46.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----ccc---cccC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM---GIDR 324 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~~~---GiD~ 324 (524)
.+.++||.++++.-+.++++.+.+. ++.+..++++..... .......+..+|+|+|.- +.. +++.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3447999999999999999888764 667777776532211 111223567789999952 111 3566
Q ss_pred CCccEEE
Q 009843 325 KDVRLVC 331 (524)
Q Consensus 325 p~v~~VI 331 (524)
.++++||
T Consensus 174 ~~~~~lV 180 (245)
T 3dkp_A 174 ASVEWLV 180 (245)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 6676665
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.44 E-value=8.3 Score=37.15 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCCEEEEcCCCChHHHHHH-HHHhc--CCCeEEEeC
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l~--~~~~~lvl~ 85 (524)
|.-+.+++|+|+|||.... +..+. .++.+.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3457788999999995432 33232 356665554
No 362
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=55.41 E-value=11 Score=33.02 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
-+++.+|+|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367899999999975543
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=55.15 E-value=7.8 Score=37.98 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-+++.+|||+|||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678899999999654
No 364
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=55.13 E-value=5.6 Score=34.83 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~ 71 (524)
..|.-+++.+|+|+|||...-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356678899999999996543
No 365
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=54.99 E-value=1.2e+02 Score=27.14 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHc--C-C--CEEEEcCCCChHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 009843 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLS--G-R--DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK 99 (524)
Q Consensus 25 ~~~~~l~~~fg~~~~r~~Q~~~i~~~l~--g-~--d~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (524)
++.....+ .|+....+.+.+.+..+.. + + .-++-..||+|-+..++...+..++.++-+=.....+....+.++
T Consensus 24 ~~~~~a~~-~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~ 102 (221)
T 3dr5_A 24 RAREDAAE-FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR 102 (221)
T ss_dssp HHHHHHHH-TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 33333333 6888899999988877653 2 2 256788999998877666655446666666565555555555666
Q ss_pred HcCCc---eeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009843 100 EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (524)
Q Consensus 100 ~~gi~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (524)
..|+. ..+..+... .....+. ...++++++....-..+.++..+.+....+ +++|+|++..
T Consensus 103 ~~g~~~~~i~~~~gda~-----~~l~~~~--~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG--G~lv~dn~~~ 166 (221)
T 3dr5_A 103 EAGYSPSRVRFLLSRPL-----DVMSRLA--NDSYQLVFGQVSPMDLKALVDAAWPLLRRG--GALVLADALL 166 (221)
T ss_dssp HTTCCGGGEEEECSCHH-----HHGGGSC--TTCEEEEEECCCTTTHHHHHHHHHHHEEEE--EEEEETTTTG
T ss_pred HcCCCcCcEEEEEcCHH-----HHHHHhc--CCCcCeEEEcCcHHHHHHHHHHHHHHcCCC--cEEEEeCCCC
Confidence 66654 333332211 0111111 224677766543222223333333333222 4677777653
No 366
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=54.98 E-value=5.6 Score=35.86 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=39.7
Q ss_pred CccEEEEeCccccHHHHHHHHHhC--------CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
+.++||.++++.-+.++++.+++. ++.+..++|+.+..+... ...+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCH
Confidence 457999999999999988877653 578888999876433211 1124678999995
No 367
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.93 E-value=6.4 Score=40.29 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||....
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997653
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=54.78 E-value=7.6 Score=34.85 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|+-+++.+|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677889999999999643
No 369
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.61 E-value=69 Score=24.44 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=72.8
Q ss_pred EEEEeccCChhHHHHHHHHhCCCCCeEEeccCCCCcceEEEEeeCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHH
Q 009843 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (524)
Q Consensus 196 ii~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~ 275 (524)
++.+-.|-..+....+.+.. .|--|.++.....+..-..+..+-.+..-.+++|..+.+.-..++.
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 45666677776666555543 3444566665544444455555556666778999999998888888
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
+.+.+.|+.+..+--+.+..+-++.-+...+..+.|--.|+
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 99999999999988888877765555555555555554444
No 370
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.31 E-value=9.1 Score=35.73 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.3
Q ss_pred HcCCCEEEEcCCCChHHHHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~l 72 (524)
+.|+.+++.+++|+|||....+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3488999999999999976543
No 371
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.26 E-value=7.5 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.+..+++.+++|+|||.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999997654
No 372
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=53.84 E-value=8.8 Score=34.17 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~ 70 (524)
..|+-+++.+|+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 45777899999999999654
No 373
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=53.74 E-value=11 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+.+++.+|+|+|||....
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 348999999999997544
No 374
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=53.55 E-value=7.8 Score=34.64 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHcCCCEEEEcCCCChHHHHH
Q 009843 49 AVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 49 ~~l~g~d~lv~apTGsGKTl~~ 70 (524)
.+..|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888889999999999654
No 375
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=53.37 E-value=30 Score=34.56 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=48.1
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc--------CCCHHHHHHHHHHhhcCCCcccEEEeC
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS--------TQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~ll~~t 137 (524)
.++++||.++++.-+....+.|+..|+.+..+++ ..+..++..+...+..+. .+++++|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~vLv~T 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FNVLVAT 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CSEEEEC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ceEEEEC
Confidence 5789999999999999999999999999999998 666677777888888776 6677776
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=53.10 E-value=18 Score=35.11 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.4
Q ss_pred EEEEcCCCChHHHHH
Q 009843 56 CFCLMPTGGGKSMCY 70 (524)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (524)
+.+.||+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999654
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.72 E-value=8.6 Score=36.99 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCEEEEcCCCChHHHHHH-HHHhc--CCCeEEEeC
Q 009843 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~-lp~l~--~~~~~lvl~ 85 (524)
|.-+.+++|+|+|||...- +..+. .+|.+.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3446789999999995432 33322 356666654
No 378
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.70 E-value=8 Score=32.96 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
-+++.+|.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997643
No 379
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.01 E-value=21 Score=34.87 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCccEEEEeCccccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc-----c-ccccCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKD 326 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~-----~-~GiD~p~ 326 (524)
.+.++||.++++.-+.++++.+.+ .++.+..++|+.+..+...... ..+|+|+|.-. . ..++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999998887765 3688999999998765544433 46799999521 1 2344566
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77777
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.90 E-value=6.6 Score=39.06 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=15.5
Q ss_pred HcCCCEEEEcCCCChHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~ 69 (524)
..|.-+++.+|||+|||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466789999999999954
No 381
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=51.70 E-value=52 Score=36.11 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=49.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
.+.++||.+..+..+.-..+.|...|+....+++..+...+..+......+.....++.++.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 36699999999998888888898899999999999999999998888877654443444443
No 382
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=51.54 E-value=7.8 Score=38.27 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.5
Q ss_pred cCCCEEEEcCCCChHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~ 69 (524)
.+.-+++.+|||+|||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344688999999999954
No 383
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=51.27 E-value=7.5 Score=39.08 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHHH
Q 009843 56 CFCLMPTGGGKSMCY 70 (524)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (524)
+++.+|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 578899999999654
No 384
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=50.98 E-value=9.2 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|.-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999996543
No 385
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=50.96 E-value=8.1 Score=32.04 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCCH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~ 294 (524)
.+.++||||.+-..+..++..|+..|+. +..+.||+..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4568999999988888999999999985 8899998743
No 386
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=50.91 E-value=6.2 Score=34.20 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|.-+.+.+|+|+|||...-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35557899999999996543
No 387
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=50.80 E-value=9.2 Score=31.74 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.9
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (524)
++.+++|||.+-..+...+..|.+.|+. +..|.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988889999999999985 888899864
No 388
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=50.65 E-value=12 Score=33.06 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhcCCCeEEEeCcH
Q 009843 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~ 87 (524)
++|.+++|||||.-..--+.. +..++++..-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999543322222 4566776653
No 389
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=50.40 E-value=16 Score=32.32 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.5
Q ss_pred CCEEEEcCCCChHHHH
Q 009843 54 RDCFCLMPTGGGKSMC 69 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~ 69 (524)
+-+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999964
No 390
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=50.27 E-value=9.4 Score=33.14 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+.-+++.+|+|+|||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999996543
No 391
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.25 E-value=9.5 Score=32.75 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.2
Q ss_pred EEEEcCCCChHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (524)
+++.+++|+|||....
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 6789999999997543
No 392
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.17 E-value=1.3e+02 Score=30.46 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=65.4
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccC
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~ 157 (524)
++..+++...+.-+....+.|...+..+..+++..+..++..+...+..+. .+++++|+.++.+ -.+..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~~---------GiDip 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFST---------GISVK 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHHH---------SCCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhhc---------ccccc
Confidence 455555554466667778888888889999999999988888888888776 6677777444322 23344
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC
Q 009843 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (524)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 192 (524)
.++.+|+.... |+ ....+..+++.-+..+
T Consensus 416 ~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 416 NLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp SEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred cCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 57788877665 33 3344556666555443
No 393
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.10 E-value=10 Score=36.67 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
...+++.+|+|+|||....
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997654
No 394
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=50.09 E-value=31 Score=38.21 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHhcCCccEEEEeCccccHHHHHHHHH----hCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 009843 253 LKANGDTCAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (524)
Q Consensus 253 l~~~~~~~~IIf~~s~~~~e~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~ 316 (524)
+....+..++|.++|+.-|.+.++.+. -.|+.+.++.||++.++|.... ..+|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 344455679999999988877776654 3599999999999987765544 378999996
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.96 E-value=14 Score=39.24 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=19.5
Q ss_pred HHHHcCCCEEEEcCCCChHHHHHH
Q 009843 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 48 ~~~l~g~d~lv~apTGsGKTl~~~ 71 (524)
..+..|+.+++.+|+|+|||..+.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 335578899999999999997654
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.88 E-value=7 Score=33.99 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|.-+++.++.|+|||....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999997654
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.59 E-value=9.7 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.3
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 578999999999997654
No 398
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=49.37 E-value=1.6e+02 Score=26.93 Aligned_cols=181 Identities=14% Similarity=0.135 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCccccc----ChhhHHHHHhhhccCCccEEEE
Q 009843 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAI 164 (524)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~----t~~~~~~l~~~~~~~~l~~iVi 164 (524)
.+.....+.+++.|....+................+.... ++-++..|.... ....+..+.. ..+-+|++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHh----cCCCEEEE
Confidence 4555566677778888777766655554444555555443 454554443211 1122222222 23677887
Q ss_pred ecccc---ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHHHH---HHh---CCCCCeEEeccCCCCcceEE
Q 009843 165 DEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM---ESL---CLQNPLVLKSSFNRPNLFYE 235 (524)
Q Consensus 165 DEaH~---i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~---~~l---~l~~~~~~~~~~~~~~l~~~ 235 (524)
|.... +..-+.|....-..+...........+.+++............ ..+ ++.. .+.....
T Consensus 106 ~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~---------~~~~~~~ 176 (298)
T 3tb6_A 106 NASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFP---------SPDMIVT 176 (298)
T ss_dssp SSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCC---------CGGGEEE
T ss_pred ecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCC---------CcceEEE
Confidence 74321 1111223333333333333334566777777665432222111 111 1110 0111111
Q ss_pred EEeeCchhhHHHHHHHHHHhcCCc-cEEEEeCccccHHHHHHHHHhCCCc
Q 009843 236 VRYKDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (524)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~-~~IIf~~s~~~~e~l~~~L~~~g~~ 284 (524)
.............+.++++..++. +.-|||.+-..+.-+.+.|++.|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 177 FTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp ECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 111111111256677778776542 5678888888888888888887754
No 399
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=48.87 E-value=8.6 Score=33.09 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
|.-+++.+|.|+|||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997543
No 400
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=48.67 E-value=10 Score=34.44 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~ 70 (524)
+..|+-+.+.+|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446777889999999999654
No 401
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=48.25 E-value=11 Score=40.96 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC--EEEEcCCCChHHHHH
Q 009843 45 DAIQAVLSGRD--CFCLMPTGGGKSMCY 70 (524)
Q Consensus 45 ~~i~~~l~g~d--~lv~apTGsGKTl~~ 70 (524)
..+..+++|.+ ++..+.||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36788889987 567789999999874
No 402
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=48.07 E-value=29 Score=30.67 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCC--CEEEEcCCCChHHHHH---HHHH-hcCCCeEEEeCcHHHHH
Q 009843 41 DKQLDAIQAVLSGR--DCFCLMPTGGGKSMCY---QIPA-LAKPGIVLVVSPLIALM 91 (524)
Q Consensus 41 ~~Q~~~i~~~l~g~--d~lv~apTGsGKTl~~---~lp~-l~~~~~~lvl~P~~~L~ 91 (524)
+-|..++..++... -.++.++-|++|+... ++.+ -..+..+.+++|+..-.
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~ 93 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQ 93 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHH
Confidence 56889998887543 3577889999999763 2222 23477899999986543
No 403
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=47.66 E-value=13 Score=30.62 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (524)
.+.++||||.+=..+...+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988899999999999995 888889984
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.66 E-value=9 Score=32.44 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHH
Q 009843 56 CFCLMPTGGGKSMC 69 (524)
Q Consensus 56 ~lv~apTGsGKTl~ 69 (524)
.++.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 58899999999965
No 405
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=47.31 E-value=7.4 Score=41.37 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
++++.+|+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999754
No 406
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=47.27 E-value=9.5 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.+|.|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566788999999999654
No 407
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=46.88 E-value=29 Score=38.61 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHhcCCccEEEEeCccccHHHHHHHHH----hCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 253 LKANGDTCAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 253 l~~~~~~~~IIf~~s~~~~e~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
+....+..++|.++|+.-|.+.++.+. ..|+.+..+.|+++.++|.... ..+|+++|..
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 444456679999999988877776654 4599999999999987766654 3799999964
No 408
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=46.87 E-value=26 Score=35.37 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=45.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe 139 (524)
.++++|++|++.-++...+.|+..+..+..+++. .+..+...+..+. .+++++|..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECch
Confidence 6789999999999999999999999999998875 3445666677765 777777753
No 409
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=46.83 E-value=12 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=20.4
Q ss_pred CCEEEEcCCCChHHHHH-HHHHhc--CCCeEEEeC
Q 009843 54 RDCFCLMPTGGGKSMCY-QIPALA--KPGIVLVVS 85 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~-~lp~l~--~~~~~lvl~ 85 (524)
.-+.+++|+|+|||... .+..+. .++.+++..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 34678999999999643 233322 356666654
No 410
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=46.67 E-value=17 Score=39.00 Aligned_cols=69 Identities=9% Similarity=0.165 Sum_probs=48.6
Q ss_pred ccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----cccc-c-cCCCc
Q 009843 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (524)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-----~~~G-i-D~p~v 327 (524)
.++||.++++.-+.+..+.+.+. |+.+..++|+.+...+...+ . ...+|+|+|.- +..| + +..++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999898888887764 78999999998643322211 1 24789999963 2222 2 45667
Q ss_pred cEEE
Q 009843 328 RLVC 331 (524)
Q Consensus 328 ~~VI 331 (524)
++||
T Consensus 138 ~~vV 141 (696)
T 2ykg_A 138 TLMI 141 (696)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 8877
No 411
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.89 E-value=8.3 Score=35.09 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.3
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999653
No 412
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.63 E-value=19 Score=36.92 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.++++.+|+|+|||....
T Consensus 202 ~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999997653
No 413
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=45.60 E-value=12 Score=33.66 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=14.9
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
.-+.+.+|+|+|||....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999976543
No 414
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=45.56 E-value=44 Score=37.70 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeC
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~t 137 (524)
.++++||+++++.-+......|.. .|+++..+++..+...+..+...+..+...++++++|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 478999999999999999999984 6999999999999999999999998886568888877
No 415
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=45.41 E-value=14 Score=31.82 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
.+++.+|.|+|||.....
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999976543
No 416
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=44.97 E-value=27 Score=33.18 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=49.4
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc-----cc-cccCCCc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM-GIDRKDV 327 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a~-----~~-GiD~p~v 327 (524)
+.++||.++++.-++++++.+++. +..+..+||+.+...... .+. ..+|+|+|.-. .. .++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 457999999999999999988753 578999999988765432 222 37899999531 11 2355667
Q ss_pred cEEE
Q 009843 328 RLVC 331 (524)
Q Consensus 328 ~~VI 331 (524)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=44.82 E-value=14 Score=35.62 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHH-HHHhcCCCeEEEeCcH
Q 009843 56 CFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSPL 87 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp~l~~~~~~lvl~P~ 87 (524)
+++.++.|+|||...- +..+..+.++.|+.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 5788999999996543 2223345566777763
No 418
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=44.58 E-value=13 Score=32.96 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.-+++.++.|+|||....
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997543
No 419
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=44.32 E-value=13 Score=38.58 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.+.++++.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4578999999999999764
No 420
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=44.30 E-value=13 Score=31.15 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCC
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (524)
.+.++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567999999888889999999999985 778888864
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=44.28 E-value=13 Score=31.66 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.7
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~l 72 (524)
+.+++.++.|+|||.+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976654
No 422
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.27 E-value=18 Score=31.99 Aligned_cols=19 Identities=16% Similarity=-0.192 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+.-+.+.+++|+|||....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457789999999996543
No 423
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=43.90 E-value=16 Score=38.24 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
|..+++.+|+|+|||....
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999997654
No 424
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.87 E-value=10 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-.++++|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999654
No 425
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=43.64 E-value=18 Score=32.25 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.4
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
.+++.+|.|+|||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999976543
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.12 E-value=11 Score=37.43 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 427
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=43.07 E-value=14 Score=33.03 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=13.9
Q ss_pred EEEEcCCCChHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (524)
+++.+|.|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999976543
No 428
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=43.00 E-value=20 Score=38.46 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc------CCceeEeccC--------CCHHHHHHHHHHhhcCCCcccEEEeCc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSST--------QTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~------gi~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~ll~~tp 138 (524)
++++||.++++..++...+.|+.. |+.+..+++. .+..++..+...+..+. .+++++|.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEcc
Confidence 689999999999999999999886 8999999998 88999999999888876 66665553
No 429
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=42.74 E-value=2e+02 Score=26.24 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009843 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (524)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (524)
.++....+.+++.|.....................+.... ++-++..|... ....+.. .....+-+|++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~----~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLRT----ELPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHHH----SSCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHHH----hhccCCCEEEEeccc
Confidence 4455555667778887777666555554444555555444 45454444322 2222222 222346778877543
Q ss_pred c---ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHH-H---H---HHHhCCCCCeEEeccCCCCcceEEEEe
Q 009843 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK-D---V---MESLCLQNPLVLKSSFNRPNLFYEVRY 238 (524)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~-~---i---~~~l~l~~~~~~~~~~~~~~l~~~v~~ 238 (524)
. +..-+.|....-..+...........+.+++......... . + ....++... +.......
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---------~~~~~~~~- 167 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVR---------QEWIAAGG- 167 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCC---------GGGEEC---
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCC---------HHHeEeCC-
Confidence 2 1111223333333333333334566788887765332211 1 1 111121110 00000000
Q ss_pred eCchhhHHHHHHHHHHhcCCccEEEEeCccccHHHHHHHHHhCCCc
Q 009843 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (524)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 284 (524)
...+.....+.++++..+ .+.-|||.+-..+..+.+.|++.|+.
T Consensus 168 -~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 168 -VRADNGRDGAIKVLTGAD-RPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -----CCHHHHHHHHTC-C-CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred -CChhHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 011223445556665443 45677888888888888888877654
No 430
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=42.69 E-value=17 Score=32.20 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=24.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccC
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~ 203 (524)
...+++++||+..+......| ...|..+... ..++++-|+|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~---~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLF---IQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHH---HHHHHHHHHC--SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccHHH---HHHHHHHHhC--CCcEEEEEeec
Confidence 447899999986653322223 3445555553 34566546664
No 431
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=42.67 E-value=30 Score=29.98 Aligned_cols=14 Identities=14% Similarity=-0.000 Sum_probs=11.7
Q ss_pred EEEEcCCCChHHHH
Q 009843 56 CFCLMPTGGGKSMC 69 (524)
Q Consensus 56 ~lv~apTGsGKTl~ 69 (524)
+.+.++.|+|||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999953
No 432
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.65 E-value=13 Score=33.56 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.+.-+++.+++|+|||....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34568899999999997653
No 433
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=42.59 E-value=14 Score=32.25 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.+.-+++.++.|+|||....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999997553
No 434
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=42.29 E-value=11 Score=33.56 Aligned_cols=17 Identities=24% Similarity=0.088 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCChHHHH
Q 009843 53 GRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~ 69 (524)
|.-+.+.+|+|+|||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577899999999954
No 435
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=42.26 E-value=27 Score=32.68 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.6
Q ss_pred CCccEEEEeCccccHHHHHHHHHhCCC-ceEEEcCCCCHH
Q 009843 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLNDK 295 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~~~ 295 (524)
.+.++|+||.+=..+...+..|...|+ ++..|.||+..-
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 467899999998899999999999999 489999998753
No 436
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.26 E-value=15 Score=31.89 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+.-+++.+++|+|||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999997654
No 437
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=42.18 E-value=17 Score=31.39 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.-+++.+++|+|||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 438
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=42.15 E-value=15 Score=32.06 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.0
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999643
No 439
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.03 E-value=15 Score=31.21 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=14.6
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
+-+++.++.|+|||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 440
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=41.80 E-value=16 Score=37.10 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=39.1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009843 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (524)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe 139 (524)
+++++|++|++.-++...+.|+..++.+..+++. ++..+...+..+. .+++++|..
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~--~~vLVaT~v 232 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQKK--PDFILATDI 232 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------CC--CSEEEESSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCCC--ceEEEECCh
Confidence 6789999999999999999999999999988883 2334455555554 677777753
No 441
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=41.40 E-value=12 Score=33.21 Aligned_cols=19 Identities=16% Similarity=-0.188 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.+|+|+|||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445678899999999654
No 442
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=41.40 E-value=13 Score=41.82 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=45.7
Q ss_pred CccEEEEeCccccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-cc----cc-c-cCCC
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG----MG-I-DRKD 326 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~----~G-i-D~p~ 326 (524)
+.++||.++++.-+.++.+.++.. ++.+..+||+.+...+...+. +..+|+|+|.- +. .+ + ...+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 668999999999998888777664 899999999986654322221 24789999953 21 11 2 4456
Q ss_pred ccEEE
Q 009843 327 VRLVC 331 (524)
Q Consensus 327 v~~VI 331 (524)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 67777
No 443
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=41.29 E-value=19 Score=31.39 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCChHHHHHH
Q 009843 51 LSGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 51 l~g~d~lv~apTGsGKTl~~~ 71 (524)
..+.-+++.+++|+|||....
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 345678899999999997543
No 444
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=41.16 E-value=25 Score=32.59 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.-+++.|++|+|||....
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 357899999999996543
No 445
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=40.76 E-value=61 Score=30.06 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred CccEEEEeCccccHHHHHHHHHhCCCceEEEcCCCCHHHH-HHHHHHHh--cCCCcEEEEcc
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR-SSVLDDWI--SSRKQVVVATV 316 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R-~~~~~~f~--~g~~~VlVaT~ 316 (524)
+-.+++.-.+.+.++++++.|++.|..+..+.++++..+- +...+... -|.++|||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4467777777788899999999999999999999875543 22222222 28899999753
No 446
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.70 E-value=15 Score=31.95 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+.-+++.++.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999997543
No 447
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=40.69 E-value=20 Score=45.01 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.7
Q ss_pred HHcCCCEEEEcCCCChHHHHH
Q 009843 50 VLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 50 ~l~g~d~lv~apTGsGKTl~~ 70 (524)
+..++.+++.||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345789999999999999765
No 448
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=40.59 E-value=19 Score=30.63 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=30.5
Q ss_pred CccEEEEeCccc---------cHHHHHHHHHhCCCceEEEcCCCC
Q 009843 258 DTCAIVYCLERT---------TCDELSAYLSAGGISCAAYHAGLN 293 (524)
Q Consensus 258 ~~~~IIf~~s~~---------~~e~l~~~L~~~g~~~~~~h~~l~ 293 (524)
+.++||||.+-. .+..++..|...|+.+..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 568999999874 477889999999999999999864
No 449
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=40.06 E-value=17 Score=33.73 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~l 72 (524)
.|.-+.+.+|+|+|||...-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678999999999976543
No 450
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=40.03 E-value=22 Score=38.83 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.+|||+|||....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997653
No 451
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=40.03 E-value=18 Score=36.00 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|+-+++.+|+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999654
No 452
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=39.96 E-value=16 Score=32.27 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~l 72 (524)
+.+.+|.|+|||...-+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999976543
No 453
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=39.69 E-value=1.3e+02 Score=23.43 Aligned_cols=57 Identities=5% Similarity=-0.060 Sum_probs=39.4
Q ss_pred CccEEEEeCc------cccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009843 258 DTCAIVYCLE------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (524)
Q Consensus 258 ~~~~IIf~~s------~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVa 314 (524)
..+++||..+ --.|..+.+.|.+.|+....+.=...+..+..+.+......++.++-
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 4579999874 77899999999999998777765555665555554433344555543
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=39.64 E-value=20 Score=35.06 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCEEEEcCCCChHHH-HHHHHHhc--C------CCeEEEeCc
Q 009843 54 RDCFCLMPTGGGKSM-CYQIPALA--K------PGIVLVVSP 86 (524)
Q Consensus 54 ~d~lv~apTGsGKTl-~~~lp~l~--~------~~~~lvl~P 86 (524)
.-+.+.+|+|+|||. +.++.... . ++.++++.-
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 457899999999994 44444443 1 367677753
No 455
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=39.64 E-value=13 Score=33.30 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567899999999996543
No 456
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=39.60 E-value=27 Score=32.76 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=36.1
Q ss_pred HHHhcCCccEEEEeCccccHHHHHHHHHhCCC-ceEEEcCCCCHH
Q 009843 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLNDK 295 (524)
Q Consensus 252 ~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~~~ 295 (524)
.+...++.++++||.+-..+...+..|.+.|+ ++..+.||+..-
T Consensus 175 ~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW 219 (265)
T 4f67_A 175 NLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNY 219 (265)
T ss_dssp HTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred hhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHH
Confidence 34345677899999998899999999999998 588899997643
No 457
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=39.47 E-value=16 Score=31.62 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHH-HHH-hcCCCeEEEeCcHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ-IPA-LAKPGIVLVVSPLIALME 92 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~-lp~-l~~~~~~lvl~P~~~L~~ 92 (524)
+++.++.|+|||.... |.. +...+..+...|.-.++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 6789999999996543 221 222333333336544443
No 458
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=39.37 E-value=18 Score=32.47 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+..+++.+|.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999997554
No 459
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=39.32 E-value=12 Score=36.98 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHH
Q 009843 56 CFCLMPTGGGKSMC 69 (524)
Q Consensus 56 ~lv~apTGsGKTl~ 69 (524)
.++.+|||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999965
No 460
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=39.23 E-value=16 Score=31.59 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=13.9
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
-+++.++.|+|||....
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997654
No 461
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=39.10 E-value=18 Score=32.40 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+..+++.++.|+|||....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=38.88 E-value=97 Score=30.88 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.6
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
-+++.++.|+|||....
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999996543
No 463
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=38.79 E-value=17 Score=32.10 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQI 72 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~l 72 (524)
.+.+.++.|+|||...-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 367899999999976543
No 464
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=38.51 E-value=1.4e+02 Score=23.48 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhHHHH
Q 009843 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (524)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~~~~ 210 (524)
...+++++|- +.+ ...+..+..++...++.|++++|+.........
T Consensus 47 ~~~dlvi~d~---~~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~ 92 (142)
T 2qxy_A 47 EKIDLVFVDV---FEG-----EESLNLIRRIREEFPDTKVAVLSAYVDKDLIIN 92 (142)
T ss_dssp SCCSEEEEEC---TTT-----HHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHH
T ss_pred cCCCEEEEeC---CCC-----CcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Confidence 3478999996 221 122456677788888999999999887654443
No 465
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.44 E-value=31 Score=37.65 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.7
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.+|||+|||....
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999997654
No 466
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.36 E-value=19 Score=31.55 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~~ 71 (524)
.|.-+++.++.|+|||....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668899999999997543
No 467
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.34 E-value=26 Score=38.24 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
..++++.+|+|+|||....
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3579999999999997654
No 468
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=38.11 E-value=1.3e+02 Score=28.53 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=19.3
Q ss_pred CEEEEcCCCChHHHHHH-HHHh--cCCCeEEEeC
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l--~~~~~~lvl~ 85 (524)
-+.+.+++|+|||.... +... ..+++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36678999999995433 3322 2356666654
No 469
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=38.04 E-value=19 Score=31.73 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 009843 54 RDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 54 ~d~lv~apTGsGKTl~~~ 71 (524)
.-+++.++.|+|||....
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997654
No 470
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=37.91 E-value=1.1e+02 Score=32.83 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred HHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcC------------------------------------CceeEeccCCCH
Q 009843 71 QIPALAKPGIVLVVSPLIALMENQVIGLKEKG------------------------------------IAGEFLSSTQTM 114 (524)
Q Consensus 71 ~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~g------------------------------------i~~~~~~~~~~~ 114 (524)
+...+..++.+||.+|++.-++.....|.... ..+..+++..+.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 34445668999999999998888888877632 136788999999
Q ss_pred HHHHHHHHHhhcCCCcccEEEeCcc
Q 009843 115 QVKTKIYEDLDSGKPSLRLLYVTPE 139 (524)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~ll~~tpe 139 (524)
.++..+......+. .+++++|..
T Consensus 325 ~~r~~v~~~f~~g~--~~vlvaT~~ 347 (715)
T 2va8_A 325 ALRDLIEEGFRQRK--IKVIVATPT 347 (715)
T ss_dssp HHHHHHHHHHHTTC--SCEEEECGG
T ss_pred HHHHHHHHHHHcCC--CeEEEEChH
Confidence 99988888888876 778777754
No 471
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=37.91 E-value=19 Score=32.39 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHHH
Q 009843 56 CFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 56 ~lv~apTGsGKTl~~~ 71 (524)
+++.+|+|+||+....
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999986443
No 472
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=37.87 E-value=17 Score=31.34 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.++.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999654
No 473
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=37.63 E-value=34 Score=36.84 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=45.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCCCHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009843 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (524)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~tpe 139 (524)
..+.+||++|++.-++...+.|+..++.+..+++. ++..+...+..+. .+++++|..
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~--~~VLVaTdv 465 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD--WDFVITTDI 465 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC--CSEEEECGG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC--ceEEEECch
Confidence 36789999999999999999999999999999883 4555666676665 777777753
No 474
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=37.50 E-value=17 Score=33.31 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666889999999999643
No 475
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=37.18 E-value=29 Score=31.79 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999997643
No 476
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.09 E-value=28 Score=30.52 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.5
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-+++.++.|+|||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999765
No 477
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=37.07 E-value=18 Score=31.90 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CCccEEEEeCccccHHH-HHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 009843 257 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (524)
Q Consensus 257 ~~~~~IIf~~s~~~~e~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a 317 (524)
.+.++||.++++.-+++ +.+.+.. .++.+..++|+.....+..... +..+|+|+|..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 35689999999988877 5555543 3678889998765332211111 24789999853
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=37.04 E-value=20 Score=32.51 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+..+++.+++|+|||....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997554
No 479
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.87 E-value=21 Score=30.23 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=13.8
Q ss_pred CEEEEcCCCChHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~ 71 (524)
.+++.++.|+|||....
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36889999999997543
No 480
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=36.80 E-value=20 Score=32.58 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
.+-+++.+|+|+||+...
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345788999999998644
No 481
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=36.67 E-value=20 Score=32.88 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
+.-+++.+|.|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999654
No 482
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=36.66 E-value=16 Score=35.21 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+++|+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4667889999999999654
No 483
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=36.64 E-value=19 Score=31.57 Aligned_cols=19 Identities=21% Similarity=-0.015 Sum_probs=14.8
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 009843 55 DCFCLMPTGGGKSMCYQIP 73 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~lp 73 (524)
-+.+.+++|||||....+-
T Consensus 10 ~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678899999999765443
No 484
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.63 E-value=1.5e+02 Score=23.17 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=28.7
Q ss_pred CccEEEEecccc----ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeccCChhH
Q 009843 158 LLNLVAIDEAHC----ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (524)
Q Consensus 158 ~l~~iViDEaH~----i~~~g~~fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (524)
..+++++|-.-- -...| +..+..++...+..|++++|+......
T Consensus 47 ~~dlvi~d~~~~~~~~~~~~g------~~~~~~l~~~~~~~~ii~ls~~~~~~~ 94 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNGNEG------LFWLHEIKRQYRDLPVVLFTAYADIDL 94 (140)
T ss_dssp CEEEEEEETTTTC-----CCH------HHHHHHHHHHCTTCCEEEEEEGGGHHH
T ss_pred CCCEEEEeCCcCCCCCCCccH------HHHHHHHHhhCcCCCEEEEECCCCHHH
Confidence 478999985311 01111 355667777889999999998866543
No 485
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.53 E-value=20 Score=31.29 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=12.8
Q ss_pred EEEEcCCCChHHHHH
Q 009843 56 CFCLMPTGGGKSMCY 70 (524)
Q Consensus 56 ~lv~apTGsGKTl~~ 70 (524)
+++.++.|+|||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999654
No 486
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.39 E-value=1.6e+02 Score=23.20 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccccHHHHHH---HHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 009843 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSA---YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (524)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~---~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (524)
++--+.+.++....+.-.++|.+.| .+-+.+.. .-++.|..+...+..-+...|.+.++.|++..++|
T Consensus 62 edfrenireiwerypqldvvvivtt-ddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdv 132 (162)
T 2l82_A 62 EDFRENIREIWERYPQLDVVVIVTT-DDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDV 132 (162)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEC-CCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEec-CcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCcee
Confidence 4555667777777766555555544 33444444 44567999988888888889999999999765443
No 487
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=36.28 E-value=14 Score=32.23 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=12.8
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-+.+++|+|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999654
No 488
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=35.99 E-value=21 Score=31.85 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 009843 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 40 r~~Q~~~i~~~l~g~d~lv~apTGsGKTl~~ 70 (524)
.+.+++.. .+..|.-+++.++.|+|||...
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444442 2345666888999999999654
No 489
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.96 E-value=19 Score=31.26 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
|.-+++.++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4457899999999996543
No 490
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=35.92 E-value=15 Score=33.67 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.+|.|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999643
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=35.76 E-value=17 Score=32.43 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.0
Q ss_pred CEEEEcCCCChHHHHH
Q 009843 55 DCFCLMPTGGGKSMCY 70 (524)
Q Consensus 55 d~lv~apTGsGKTl~~ 70 (524)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3578899999999653
No 492
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=35.58 E-value=33 Score=32.11 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=29.2
Q ss_pred CCCEEEE-cCCCChHHHHHH--HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009843 53 GRDCFCL-MPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (524)
Q Consensus 53 g~d~lv~-apTGsGKTl~~~--lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (524)
|..+++. .|.|+|||++++ ...+.++.++++++-.. =..+..+.++.+|+.
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHcCCC
Confidence 3457777 455555555544 34566777888876322 223444556666654
No 493
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=35.55 E-value=19 Score=34.39 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCChHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~ 70 (524)
++-+++.+|+|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345788999999999654
No 494
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.48 E-value=14 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCChHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMC 69 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~ 69 (524)
.|.-+.+.+|.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466678999999999954
No 495
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=35.28 E-value=21 Score=31.98 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 009843 53 GRDCFCLMPTGGGKSMCYQ 71 (524)
Q Consensus 53 g~d~lv~apTGsGKTl~~~ 71 (524)
+..+++.++.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999997544
No 496
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=35.23 E-value=44 Score=28.08 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCccEEEEe-CccccHHHHH----HHHHhCCC---ceEEEcCCCCHH
Q 009843 246 YADLCSVLKANGDTCAIVYC-LERTTCDELS----AYLSAGGI---SCAAYHAGLNDK 295 (524)
Q Consensus 246 ~~~l~~~l~~~~~~~~IIf~-~s~~~~e~l~----~~L~~~g~---~~~~~h~~l~~~ 295 (524)
+..+...+.......+|+|| .+-..+...+ ..|.+.|+ .+..+.||+..-
T Consensus 56 ~~~l~~~l~~~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W 113 (152)
T 2j6p_A 56 YEKLAKTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAF 113 (152)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHH
T ss_pred HHHHHHHhcccCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH
Confidence 33444445433333455569 4544444444 77888886 688899997643
No 497
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=34.95 E-value=24 Score=34.15 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.4
Q ss_pred CEEEEcCCCChHHHHHH-HHHh--cCCCeEEEe
Q 009843 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVV 84 (524)
Q Consensus 55 d~lv~apTGsGKTl~~~-lp~l--~~~~~~lvl 84 (524)
-+.+.+|+|+|||.... +... ..+++++++
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46788999999995533 3322 236666665
No 498
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=34.73 E-value=23 Score=35.87 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=45.8
Q ss_pred CccEEEEeCccccHHHHHHHHHhCCCc-eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-cccccc-C-CCccEEE
Q 009843 258 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-R-KDVRLVC 331 (524)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~~VlVaT~a-~~~GiD-~-p~v~~VI 331 (524)
+.++||.|+++.-+.++++.+.+.|+. +..+||+... ..+|+|+|.- +..-++ + .+..+||
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liI 197 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLI 197 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEE
Confidence 568999999999999999999888999 9999998753 4679999852 222221 1 3466666
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=34.67 E-value=15 Score=34.21 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 009843 52 SGRDCFCLMPTGGGKSMCY 70 (524)
Q Consensus 52 ~g~d~lv~apTGsGKTl~~ 70 (524)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999643
No 500
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=34.66 E-value=1.6e+02 Score=22.75 Aligned_cols=55 Identities=5% Similarity=0.075 Sum_probs=38.4
Q ss_pred ccEEEEeC------ccccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009843 259 TCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (524)
Q Consensus 259 ~~~IIf~~------s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VlV 313 (524)
.+++||.. +--.|..+...|.+.|+....+.-..++..+..+.+......+++|+
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 46888876 44579999999999999988888777766666555443333444443
Done!