BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009845
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 112/172 (65%), Gaps = 4/172 (2%)
Query: 5 SSSSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQ 64
SS ++ KYDVFLSFRG DTR NF S L+ L R+ I TF DD+EL G SP + I+
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 65 GSKISVIILSKDYASSKWCLNELVKILECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAF 124
S+ +V+++S++YA+S WCL+ELV I++ + V+P+FY V+P+ VR Q G + F
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 125 VKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMNIRPEAKLVDEIINDILKK 176
KH ++ PEKV KWR ALT + LSG S + ++KLVD+I N+I K
Sbjct: 122 KKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 105/171 (61%), Gaps = 3/171 (1%)
Query: 4 TSSSSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAI 63
+ S S +Y+VFLSFRG DTR+ FT L+ +L R KI+TF DD+EL +G I P + AI
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87
Query: 64 QGSKISVIILSKDYASSKWCLNELVKILECKSMNG-QMVVPVFYHVDPSDVRKQNGTFGD 122
SKI V I+S YA SKWCL EL +I+ + + ++++P+FY VDPSDVR Q G +
Sbjct: 88 DQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147
Query: 123 AFVKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMNIRPEAKLVDEIINDI 173
AF KH +F + +Q W+ AL + +L GW + + D++ DI
Sbjct: 148 AFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 7 SSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGS 66
+S+ +D+F+S ED D F L L + DD LR GD + +I + S
Sbjct: 16 TSAPPHDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSS 74
Query: 67 KISVIILSKDYASSKWCLNELVKILECKSMNGQMVVPVFYHVDPSDVRKQNGTFGD 122
+ +++LS + +W EL + + +S ++P+++ V +V + T D
Sbjct: 75 RFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 146/361 (40%), Gaps = 66/361 (18%)
Query: 213 VGIWGMGGTGKTTLAGAIF---NLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL 269
V I+GM G GK+ LA +L+ F G ++ ++ +K G L+ L+ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLLMKLQNLCMRLDQ 208
Query: 270 DENIKIRTPDLPKYMRERLQQMKI------FIVLDDVNKVRQLEYLTGGLDQFGPGSRLI 323
+E+ R P + ++RL+ + + ++LDDV + L F +++
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV-------WDPWVLKAFDNQCQIL 261
Query: 324 ITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCXXXXXXXXEHVVKYAN 383
+TTRDK V D + +GL + LE+ F + ++K
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECK 318
Query: 384 GNPLALRVLGSFLHQKSKLEWENALENL-----KMISDPDIYD------VLKISYNELKL 432
G+PL + ++G+ L W L L K I YD + IS L+
Sbjct: 319 GSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 377
Query: 433 EEKNIFLDIACFFAGEDKDFVLRIL---------EVSNCVLNVLVHKSLITLSYSNK--- 480
+ K+ + D++ +D ++L EV + +L V+KSL+ + + K
Sbjct: 378 DIKDYYTDLSIL--QKDVKVPTKVLCVLWDLETEEVED-ILQEFVNKSLLFCNRNGKSFC 434
Query: 481 LQMHDL------------LQEMGREIVRQ-EFVKEPGKRS------RLWYHEDVYHVLKK 521
+HDL LQ++ R++V Q + +P S WY+ YH+
Sbjct: 435 YYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASA 494
Query: 522 N 522
N
Sbjct: 495 N 495
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 150/365 (41%), Gaps = 82/365 (22%)
Query: 213 VGIWGMGGTGKTTLAGAIF---NLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL 269
V I GM G GK+ LA +L+ F G +V ++ +K G L+ L+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 214
Query: 270 DENIKIRTPDLPKYMRERLQQMKI------FIVLDDVNKVRQLEYLTGGLDQFGPGSRLI 323
DE+ R P + ++RL+ + + ++LDDV + + L F +++
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV-------WDSWVLKAFDSQCQIL 267
Query: 324 ITTRDKQVLDDFG------VLNTNIYEVNGLEYHEALELFCNFAFKHDYCXXXXXXXXEH 377
+TTRDK V D + +++ + GLE L LF N K D
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEI---LSLFVNMK-KADL-----PEQAHS 318
Query: 378 VVKYANGNPLALRVLGSFLHQKSKLEWENALENL-----KMISDPDIYD------VLKIS 426
++K G+PL + ++G+ L WE L+ L K I YD + IS
Sbjct: 319 IIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 377
Query: 427 YNELKLEEKNIFLDIACFFAGEDKDF-----VLRIL------EVSNCVLNVLVHKSLITL 475
L+ + K+ + D++ KD VL IL EV + +L V+KSL+
Sbjct: 378 VEMLREDIKDYYTDLSIL----QKDVKVPTKVLCILWDMETEEVED-ILQEFVNKSLLFC 432
Query: 476 SYSNK---LQMHDL------------LQEMGREIVRQ-EFVKEPGKRS------RLWYHE 513
+ K +HDL LQ++ ++I+ Q + +P S WY+
Sbjct: 433 DRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNF 492
Query: 514 DVYHV 518
YH+
Sbjct: 493 LAYHM 497
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 213 VGIWGMGGTGKTTLAGAIF---NLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL 269
V I GM G GK+ LA +L+ F G +V ++ +K G L+ L+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 208
Query: 270 DENIKIRTPDLPKYMRERLQQMKI------FIVLDDVNKVRQLEYLTGGLDQFGPGSRLI 323
DE+ R P + ++RL+ + + ++LDDV + + L F +++
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV-------WDSWVLKAFDSQCQIL 261
Query: 324 ITTRDKQVLDDFG------VLNTNIYEVNGLEYHEALELFCNFAFKHDYCXXXXXXXXEH 377
+TTRDK V D + +++ + GL E L LF N K D
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGL---EILSLFVNMK-KAD-----LPEQAHS 312
Query: 378 VVKYANGNPLALRVLGSFLHQKSKLEWENALENL-----KMISDPDIYD------VLKIS 426
++K G+PL + ++G+ L WE L+ L K I YD + IS
Sbjct: 313 IIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 371
Query: 427 YNELKLEEKNIFLDIA 442
L+ + K+ + D++
Sbjct: 372 VEMLREDIKDYYTDLS 387
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 68/362 (18%)
Query: 213 VGIWGMGGTGKTTLAGAIF---NLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL 269
V I+GM G GK+ LA +L+ F G ++ ++ +K G L+ L+ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLLMKLQNLCMRLDQ 215
Query: 270 DENIKIRTPDLPKYMRERLQQMKI------FIVLDDVNKVRQLEYLTGGLDQFGPGSRLI 323
+E+ R P + ++RL+ + + ++LDDV + L F +++
Sbjct: 216 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV-------WDPWVLKAFDNQCQIL 268
Query: 324 ITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCXXXXXXXXEHVVKYAN 383
+TT DK V D + +GL + LE+ F + ++K
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECK 325
Query: 384 GNPLALRVLGSFLHQKSKLEWENALENL-----KMISDPDIYD------VLKISYNELKL 432
G+PL + ++G+ L W L L K I YD + IS L+
Sbjct: 326 GSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 384
Query: 433 EEKNIFLDIACFFAGEDKDF--------VLRILEVSNC--VLNVLVHKSLITLSYSNK-- 480
+ K+ + D++ KD VL LE +L V+KSL+ + + K
Sbjct: 385 DIKDYYTDLSIL----QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSF 440
Query: 481 -LQMHDL------------LQEMGREIVRQ-EFVKEPGKRS------RLWYHEDVYHVLK 520
+HDL LQ++ R++V Q + +P S WY+ YH+
Sbjct: 441 CYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMAS 500
Query: 521 KN 522
N
Sbjct: 501 AN 502
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 186 FNGFVGLNSRIEEIKSLLCIGLPD---FRIVGI--------WGMGGTGKTTLAGAIFNLI 234
F+G GL +I E++ ++ + L + F+ VGI +G GTGKT LA A+ I
Sbjct: 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239
Query: 235 SWEF 238
F
Sbjct: 240 GANF 243
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ E G A V E + +G L H
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYH 193
>pdb|1S4D|A Chain A, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|B Chain B, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|D Chain D, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|E Chain E, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|F Chain F, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|G Chain G, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|H Chain H, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|I Chain I, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|J Chain J, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|K Chain K, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|L Chain L, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|M Chain M, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
Length = 280
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 335 FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCXXXXXXXXEHVVKYANGNPLALRVLGS 394
G + N+ G E + CN A E V A P A+ V+G
Sbjct: 189 IGAITANLI-AGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGE 247
Query: 395 FLHQKSKLEWENALENLKMISDPDIYDVLK 424
+ ++ L+W AL+ K+ +DP +L+
Sbjct: 248 VVRLRAALDWIGALDGRKLAADPFANRILR 277
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + + I+ E G A V E + +G L H
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYH 200
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 91 LECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASN 150
LE GQ+ VP YH P DV K+ G A ++ EKQ + E+++ + +T+
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135
Query: 151 LSG 153
+G
Sbjct: 136 EAG 138
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 11 KYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISV 70
++ F+S+ G D+ + L L ++ + + G I I I+ S S+
Sbjct: 12 QFHAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 71 IILSKDYASSKWCLNEL 87
+LS ++ S+WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 91 LECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQ 139
LE GQ+ VP YH P DV K+ G A ++ EKQ + E+++
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLE 124
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 266 SEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIIT 325
S + + ++I TP R+ + +K+F+ + D R G + + PG+RLI T
Sbjct: 275 SITISQRVRIATPG-----RDFMTDLKVFLDVQDAADFR-------GFESYEPGARLIRT 322
Query: 326 TRD 328
RD
Sbjct: 323 IRD 325
>pdb|1UP8|A Chain A, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|B Chain B, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|C Chain C, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|D Chain D, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
Length = 598
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 266 SEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIIT 325
S + + ++I TP R+ + +K+F+ + D R G + + PG+RLI T
Sbjct: 277 SITISQRVRIATPG-----RDFMTDLKVFLDVQDAADFR-------GFESYEPGARLIRT 324
Query: 326 TRD 328
RD
Sbjct: 325 IRD 327
>pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|B Chain B, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|C Chain C, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|D Chain D, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|E Chain E, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|F Chain F, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|G Chain G, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|H Chain H, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
Length = 376
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 278 PDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGV 337
PD+P M + +D+ +R L + +D+ G +IT ++D FG+
Sbjct: 220 PDIPFVMEQPCNS------FEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSLVDGFGM 273
Query: 338 LNTNIYEVNGLEYHEALELFC 358
+ + GL++ A FC
Sbjct: 274 ---KVSRIGGLQHMRAFRDFC 291
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 144 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 190
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 154 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 200
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 202
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 202
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 202
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 198
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 109 DPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWD 155
D D++K T GD ++ D+PE+ Q+ RA +T+ N+S D
Sbjct: 72 DLEDLKKNLMTEGDMKIRK----TDIPERYQELRAGITDYGNMSSED 114
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259
+G++G G GKT L + N ++ G A V E + +G L H
Sbjct: 202 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYH 248
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 109 DPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWD 155
D D++K T GD ++ D+PE+ Q+ RA +T+ N+S D
Sbjct: 69 DLEDLKKNLMTEGDMKIRK----TDIPERYQELRAGITDYGNMSSED 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,704,122
Number of Sequences: 62578
Number of extensions: 671595
Number of successful extensions: 1956
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 41
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)