Query 009845
Match_columns 524
No_of_seqs 412 out of 2836
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 18:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.7E-87 1.2E-91 753.9 50.9 514 1-524 1-530 (1153)
2 PLN03194 putative disease resi 100.0 2.1E-41 4.6E-46 290.0 15.7 160 3-179 18-179 (187)
3 KOG4658 Apoptotic ATPase [Sign 100.0 7.7E-40 1.7E-44 352.7 24.6 300 190-498 161-498 (889)
4 PF00931 NB-ARC: NB-ARC domain 100.0 1E-36 2.3E-41 296.8 14.9 264 192-461 1-280 (287)
5 PF01582 TIR: TIR domain; Int 99.9 4.2E-22 9.1E-27 171.5 5.2 133 14-146 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 1.4E-20 3E-25 162.4 11.3 137 11-150 1-139 (140)
7 PRK04841 transcriptional regul 99.8 6.7E-17 1.5E-21 182.3 24.5 294 181-498 8-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.7 3E-17 6.4E-22 133.1 3.9 87 14-107 1-87 (102)
9 COG3899 Predicted ATPase [Gene 99.7 1.6E-15 3.5E-20 165.3 16.8 321 188-522 1-405 (849)
10 COG2909 MalT ATP-dependent tra 99.6 1.5E-14 3.3E-19 149.7 19.1 295 182-499 14-342 (894)
11 PRK00411 cdc6 cell division co 99.5 1.1E-12 2.3E-17 133.7 23.9 285 181-476 24-358 (394)
12 TIGR02928 orc1/cdc6 family rep 99.5 1.7E-11 3.6E-16 123.6 26.5 284 182-476 10-350 (365)
13 TIGR00635 ruvB Holliday juncti 99.4 2.4E-12 5.2E-17 126.3 16.7 266 187-481 4-294 (305)
14 PF01637 Arch_ATPase: Archaeal 99.4 2.2E-13 4.8E-18 128.2 8.8 198 189-392 1-234 (234)
15 PRK00080 ruvB Holliday junctio 99.4 1.7E-12 3.6E-17 128.3 13.4 259 183-479 21-313 (328)
16 TIGR03015 pepcterm_ATPase puta 99.3 3.8E-11 8.3E-16 115.6 16.7 180 210-396 43-242 (269)
17 PF05729 NACHT: NACHT domain 99.2 7.5E-11 1.6E-15 104.6 11.6 144 211-361 1-163 (166)
18 KOG3678 SARM protein (with ste 99.2 1.4E-10 3E-15 111.9 10.5 156 7-192 608-771 (832)
19 COG2256 MGS1 ATPase related to 99.1 7.3E-10 1.6E-14 106.4 13.4 175 184-388 21-208 (436)
20 COG3903 Predicted ATPase [Gene 99.1 9.1E-11 2E-15 113.2 6.8 278 209-498 13-317 (414)
21 PTZ00202 tuzin; Provisional 99.1 2.2E-08 4.8E-13 98.1 20.0 204 145-361 213-434 (550)
22 PTZ00112 origin recognition co 99.0 1.9E-08 4.2E-13 105.9 19.5 249 182-443 750-1031(1164)
23 PRK13342 recombination factor 99.0 5.2E-08 1.1E-12 99.3 21.4 181 184-395 9-199 (413)
24 COG1474 CDC6 Cdc6-related prot 99.0 6.5E-08 1.4E-12 95.8 19.6 281 183-476 13-334 (366)
25 PRK07003 DNA polymerase III su 99.0 2.4E-08 5.3E-13 104.6 17.1 197 184-393 13-222 (830)
26 PRK07471 DNA polymerase III su 98.9 1E-07 2.2E-12 94.6 20.5 202 182-392 14-238 (365)
27 PRK06893 DNA replication initi 98.9 2.6E-08 5.7E-13 93.0 15.4 154 210-396 39-207 (229)
28 PF05496 RuvB_N: Holliday junc 98.9 1.3E-08 2.8E-13 91.5 12.7 183 183-397 20-226 (233)
29 PRK12402 replication factor C 98.9 2.9E-08 6.4E-13 98.9 16.0 199 185-392 13-226 (337)
30 PRK00440 rfc replication facto 98.9 3.5E-08 7.6E-13 97.5 16.0 184 185-390 15-201 (319)
31 PRK14963 DNA polymerase III su 98.9 2.5E-08 5.5E-13 103.0 14.8 195 184-390 11-215 (504)
32 TIGR03420 DnaA_homol_Hda DnaA 98.9 5E-08 1.1E-12 91.3 15.6 176 186-396 14-205 (226)
33 PRK14961 DNA polymerase III su 98.9 6.6E-08 1.4E-12 96.8 15.9 193 184-390 13-218 (363)
34 PRK04195 replication factor C 98.9 4.9E-08 1.1E-12 101.5 15.4 187 184-396 11-206 (482)
35 PF14516 AAA_35: AAA-like doma 98.9 9.9E-07 2.1E-11 87.0 23.7 209 181-399 5-246 (331)
36 PRK14960 DNA polymerase III su 98.8 1.4E-07 3E-12 98.1 17.2 193 184-389 12-216 (702)
37 PLN03025 replication factor C 98.8 1.3E-07 2.7E-12 93.2 16.3 185 184-390 10-198 (319)
38 PRK14949 DNA polymerase III su 98.8 8.5E-08 1.8E-12 102.6 15.6 188 184-391 13-219 (944)
39 PRK14956 DNA polymerase III su 98.8 1.8E-07 3.9E-12 94.5 16.0 191 184-388 15-218 (484)
40 PF13173 AAA_14: AAA domain 98.8 4.4E-08 9.6E-13 82.6 9.9 121 210-352 2-126 (128)
41 PRK12323 DNA polymerase III su 98.8 1.4E-07 3.1E-12 97.7 14.8 197 184-390 13-223 (700)
42 PRK09112 DNA polymerase III su 98.8 1.6E-07 3.4E-12 92.8 14.6 197 182-392 18-240 (351)
43 PRK08691 DNA polymerase III su 98.8 1.2E-07 2.5E-12 99.5 14.0 194 184-391 13-219 (709)
44 PRK08903 DnaA regulatory inact 98.7 2.2E-07 4.7E-12 87.0 14.1 175 186-396 17-203 (227)
45 PRK14962 DNA polymerase III su 98.7 4.9E-07 1.1E-11 92.8 17.4 190 184-395 11-222 (472)
46 TIGR02397 dnaX_nterm DNA polym 98.7 5.4E-07 1.2E-11 90.5 17.2 186 184-394 11-220 (355)
47 PRK07940 DNA polymerase III su 98.7 4.2E-07 9.1E-12 91.0 16.0 185 187-390 5-211 (394)
48 TIGR01242 26Sp45 26S proteasom 98.7 2.3E-07 5E-12 93.1 14.0 175 185-386 120-328 (364)
49 PRK14964 DNA polymerase III su 98.7 5.4E-07 1.2E-11 92.1 16.6 192 184-389 10-214 (491)
50 PRK06645 DNA polymerase III su 98.7 6.1E-07 1.3E-11 92.4 16.7 189 184-389 18-226 (507)
51 PF00308 Bac_DnaA: Bacterial d 98.7 6.8E-07 1.5E-11 82.7 15.2 163 210-395 34-211 (219)
52 PF13401 AAA_22: AAA domain; P 98.7 7.5E-08 1.6E-12 81.6 8.3 113 209-328 3-125 (131)
53 PRK14957 DNA polymerase III su 98.7 6E-07 1.3E-11 93.1 16.0 183 184-392 13-221 (546)
54 KOG2028 ATPase related to the 98.7 2.7E-07 5.8E-12 87.4 11.9 177 184-386 135-330 (554)
55 PRK14087 dnaA chromosomal repl 98.7 5.6E-07 1.2E-11 92.2 15.5 168 210-396 141-323 (450)
56 PF13191 AAA_16: AAA ATPase do 98.7 1.9E-08 4.1E-13 90.9 4.2 50 188-237 1-51 (185)
57 PRK05896 DNA polymerase III su 98.7 3.9E-07 8.5E-12 94.6 14.2 192 184-389 13-217 (605)
58 PRK05564 DNA polymerase III su 98.7 6E-07 1.3E-11 88.2 14.9 177 187-390 4-188 (313)
59 PRK14950 DNA polymerase III su 98.6 7.1E-07 1.5E-11 94.8 16.5 198 184-394 13-223 (585)
60 PRK08727 hypothetical protein; 98.6 1.2E-06 2.7E-11 81.9 16.2 170 186-390 18-202 (233)
61 PRK07994 DNA polymerase III su 98.6 5.9E-07 1.3E-11 94.6 15.4 193 184-390 13-218 (647)
62 TIGR00678 holB DNA polymerase 98.6 1.1E-06 2.4E-11 79.6 15.2 160 198-387 3-186 (188)
63 PRK14951 DNA polymerase III su 98.6 1.7E-06 3.8E-11 90.9 18.6 198 184-390 13-223 (618)
64 PRK09111 DNA polymerase III su 98.6 1.3E-06 2.9E-11 91.9 17.6 197 184-392 21-233 (598)
65 PRK14955 DNA polymerase III su 98.6 1.1E-06 2.4E-11 89.1 15.5 200 184-391 13-227 (397)
66 PRK13341 recombination factor 98.6 9.2E-07 2E-11 95.1 15.5 174 184-389 25-214 (725)
67 cd00009 AAA The AAA+ (ATPases 98.6 3.5E-07 7.7E-12 78.9 10.3 123 190-330 1-131 (151)
68 PRK14970 DNA polymerase III su 98.6 1.9E-06 4.1E-11 86.8 16.7 183 184-390 14-207 (367)
69 PRK14958 DNA polymerase III su 98.6 2E-06 4.3E-11 89.3 17.0 182 184-390 13-218 (509)
70 PRK09087 hypothetical protein; 98.6 2.5E-06 5.3E-11 79.2 15.6 143 210-396 44-199 (226)
71 PRK08084 DNA replication initi 98.6 2.4E-06 5.2E-11 80.1 15.6 174 187-395 22-212 (235)
72 PRK05642 DNA replication initi 98.6 4.2E-06 9.1E-11 78.3 17.0 154 210-396 45-212 (234)
73 PRK14969 DNA polymerase III su 98.6 7.4E-07 1.6E-11 93.0 13.2 190 184-387 13-215 (527)
74 PRK07764 DNA polymerase III su 98.6 3.1E-06 6.7E-11 92.3 18.2 189 184-389 12-218 (824)
75 PRK03992 proteasome-activating 98.5 1.4E-06 2.9E-11 88.0 14.4 174 186-386 130-337 (389)
76 COG2255 RuvB Holliday junction 98.5 3.5E-06 7.5E-11 77.7 15.4 260 183-481 22-316 (332)
77 PRK14959 DNA polymerase III su 98.5 2.8E-06 6.1E-11 88.8 16.4 199 184-396 13-225 (624)
78 PRK14088 dnaA chromosomal repl 98.5 5E-06 1.1E-10 85.1 17.7 164 210-393 130-306 (440)
79 PRK14954 DNA polymerase III su 98.5 4.9E-06 1.1E-10 87.9 17.4 198 184-389 13-225 (620)
80 PRK14952 DNA polymerase III su 98.5 6.6E-06 1.4E-10 86.3 17.8 190 184-387 10-214 (584)
81 TIGR02639 ClpA ATP-dependent C 98.5 2.1E-06 4.5E-11 93.9 14.6 171 165-361 164-358 (731)
82 PRK00149 dnaA chromosomal repl 98.5 5.3E-06 1.2E-10 85.7 16.4 162 210-392 148-322 (450)
83 TIGR03345 VI_ClpV1 type VI sec 98.5 3.7E-06 8E-11 92.7 15.9 197 165-385 169-389 (852)
84 PRK14953 DNA polymerase III su 98.5 1.2E-05 2.5E-10 83.1 18.6 191 184-393 13-221 (486)
85 TIGR02881 spore_V_K stage V sp 98.5 2.4E-06 5.3E-11 81.6 12.8 155 188-363 7-193 (261)
86 PRK08451 DNA polymerase III su 98.4 1.1E-05 2.5E-10 83.3 18.3 187 184-392 11-218 (535)
87 KOG2227 Pre-initiation complex 98.4 1.5E-05 3.3E-10 78.5 17.4 175 184-363 147-340 (529)
88 PRK06305 DNA polymerase III su 98.4 5.5E-06 1.2E-10 85.0 15.3 186 184-389 14-219 (451)
89 TIGR00362 DnaA chromosomal rep 98.4 7.4E-06 1.6E-10 83.6 16.3 163 210-393 136-311 (405)
90 PRK14948 DNA polymerase III su 98.4 1.3E-05 2.8E-10 85.2 18.2 198 184-393 13-223 (620)
91 PRK06647 DNA polymerase III su 98.4 1.7E-05 3.7E-10 83.3 18.6 193 184-390 13-218 (563)
92 PHA02544 44 clamp loader, smal 98.4 2.6E-06 5.7E-11 84.0 11.7 151 184-359 18-171 (316)
93 COG3267 ExeA Type II secretory 98.4 3.2E-05 6.9E-10 70.6 17.4 180 208-395 49-248 (269)
94 PRK07133 DNA polymerase III su 98.4 6.8E-06 1.5E-10 87.3 15.1 190 184-389 15-216 (725)
95 PRK14971 DNA polymerase III su 98.3 3.4E-05 7.4E-10 82.0 19.6 182 184-389 14-219 (614)
96 PRK14086 dnaA chromosomal repl 98.3 1.5E-05 3.3E-10 83.1 16.3 159 211-392 315-488 (617)
97 TIGR03689 pup_AAA proteasome A 98.3 7E-06 1.5E-10 84.4 13.1 160 186-361 181-378 (512)
98 PRK12422 chromosomal replicati 98.3 3.7E-05 7.9E-10 78.7 18.3 155 210-386 141-307 (445)
99 PRK05707 DNA polymerase III su 98.3 2.1E-05 4.5E-10 77.1 15.9 95 291-392 106-203 (328)
100 PRK06620 hypothetical protein; 98.3 1.6E-05 3.5E-10 73.1 14.2 137 211-393 45-190 (214)
101 PF08937 DUF1863: MTH538 TIR-l 98.3 1.3E-06 2.9E-11 73.6 6.3 91 12-107 1-108 (130)
102 TIGR02880 cbbX_cfxQ probable R 98.3 3E-05 6.4E-10 74.8 16.5 132 211-362 59-209 (284)
103 CHL00095 clpC Clp protease ATP 98.3 1.3E-05 2.7E-10 88.9 15.7 172 165-360 161-353 (821)
104 PRK05563 DNA polymerase III su 98.3 2.3E-05 5E-10 82.6 16.7 192 184-389 13-217 (559)
105 KOG0989 Replication factor C, 98.3 5.3E-06 1.2E-10 77.3 10.3 182 183-386 32-224 (346)
106 PRK14965 DNA polymerase III su 98.3 1.8E-05 3.9E-10 83.8 15.6 195 184-392 13-221 (576)
107 TIGR02903 spore_lon_C ATP-depe 98.3 1.3E-05 2.8E-10 85.4 14.1 50 183-234 150-199 (615)
108 PTZ00454 26S protease regulato 98.2 2.4E-05 5.2E-10 78.7 14.9 175 185-386 143-351 (398)
109 PF05621 TniB: Bacterial TniB 98.2 3.3E-05 7.2E-10 73.1 14.7 202 187-392 34-261 (302)
110 PRK10865 protein disaggregatio 98.2 2.5E-05 5.5E-10 86.5 16.2 66 165-236 160-225 (857)
111 TIGR03346 chaperone_ClpB ATP-d 98.2 2.3E-05 4.9E-10 87.2 15.9 156 184-361 170-349 (852)
112 PF10443 RNA12: RNA12 protein; 98.2 0.00038 8.3E-09 69.0 22.4 195 192-398 1-284 (431)
113 CHL00176 ftsH cell division pr 98.2 3.5E-05 7.5E-10 82.0 15.7 178 186-390 182-393 (638)
114 CHL00181 cbbX CbbX; Provisiona 98.2 0.0001 2.2E-09 71.0 17.4 134 210-363 59-211 (287)
115 PRK07399 DNA polymerase III su 98.2 7E-05 1.5E-09 73.1 15.6 193 187-392 4-221 (314)
116 PF05673 DUF815: Protein of un 98.1 0.00013 2.7E-09 67.1 15.8 54 183-237 23-79 (249)
117 TIGR01241 FtsH_fam ATP-depende 98.1 4.4E-05 9.5E-10 79.9 14.2 180 186-392 54-267 (495)
118 PTZ00361 26 proteosome regulat 98.1 2.3E-05 5.1E-10 79.4 11.7 176 186-386 182-389 (438)
119 PRK11034 clpA ATP-dependent Cl 98.1 4.1E-05 8.9E-10 83.0 13.2 48 186-235 185-232 (758)
120 PRK08116 hypothetical protein; 98.1 2.1E-05 4.6E-10 75.0 9.7 103 210-329 114-221 (268)
121 KOG2543 Origin recognition com 98.1 6.3E-05 1.4E-09 72.4 12.5 199 186-396 5-230 (438)
122 PF00004 AAA: ATPase family as 98.0 2.8E-05 6.1E-10 65.7 9.2 23 213-235 1-23 (132)
123 cd01128 rho_factor Transcripti 98.0 5.5E-06 1.2E-10 77.7 5.1 92 209-303 15-115 (249)
124 COG0593 DnaA ATPase involved i 98.0 0.00017 3.7E-09 71.6 15.6 133 209-362 112-258 (408)
125 PRK08769 DNA polymerase III su 98.0 0.0002 4.3E-09 69.7 15.4 94 290-392 112-208 (319)
126 PF08357 SEFIR: SEFIR domain; 98.0 8.7E-06 1.9E-10 70.7 5.5 65 13-77 2-70 (150)
127 PRK08181 transposase; Validate 98.0 3E-05 6.6E-10 73.5 9.0 99 211-329 107-209 (269)
128 PRK09376 rho transcription ter 98.0 1.4E-05 3E-10 78.4 6.5 92 209-303 168-268 (416)
129 TIGR00602 rad24 checkpoint pro 98.0 4.7E-05 1E-09 80.5 10.7 53 183-235 80-135 (637)
130 COG1222 RPT1 ATP-dependent 26S 98.0 5E-05 1.1E-09 72.5 9.7 171 188-386 152-357 (406)
131 PLN00020 ribulose bisphosphate 97.9 0.00034 7.4E-09 68.0 14.7 156 208-387 146-333 (413)
132 PRK07952 DNA replication prote 97.9 0.00021 4.6E-09 66.8 12.9 35 210-244 99-133 (244)
133 TIGR01243 CDC48 AAA family ATP 97.9 0.00014 3.1E-09 79.9 13.7 176 186-386 177-381 (733)
134 TIGR00767 rho transcription te 97.9 3.5E-05 7.6E-10 76.0 7.8 92 209-303 167-267 (415)
135 PRK06871 DNA polymerase III su 97.9 0.00036 7.9E-09 68.0 14.7 174 197-389 12-200 (325)
136 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00015 3.2E-09 74.8 12.3 175 187-386 228-429 (489)
137 PRK08058 DNA polymerase III su 97.9 0.00037 8E-09 68.8 14.5 160 189-360 7-181 (329)
138 PRK09183 transposase/IS protei 97.8 5.6E-05 1.2E-09 71.8 8.2 28 210-237 102-129 (259)
139 PRK12377 putative replication 97.8 7.2E-05 1.6E-09 70.1 8.8 36 210-245 101-136 (248)
140 PRK07993 DNA polymerase III su 97.8 0.00064 1.4E-08 66.9 15.7 175 196-389 11-201 (334)
141 TIGR01243 CDC48 AAA family ATP 97.8 0.00016 3.4E-09 79.6 12.4 181 187-392 453-664 (733)
142 COG1373 Predicted ATPase (AAA+ 97.8 0.00038 8.2E-09 70.4 14.2 149 212-391 39-191 (398)
143 COG2812 DnaX DNA polymerase II 97.8 0.0001 2.2E-09 75.4 10.0 188 184-385 13-213 (515)
144 TIGR02640 gas_vesic_GvpN gas v 97.8 0.0004 8.8E-09 66.2 13.4 24 211-234 22-45 (262)
145 smart00382 AAA ATPases associa 97.8 8.2E-05 1.8E-09 63.3 7.5 28 211-238 3-30 (148)
146 PRK06526 transposase; Provisio 97.8 4.9E-05 1.1E-09 71.7 6.5 28 210-237 98-125 (254)
147 COG0466 Lon ATP-dependent Lon 97.7 0.0001 2.2E-09 76.5 8.8 161 188-362 324-509 (782)
148 KOG1514 Origin recognition com 97.7 0.0014 3.1E-08 68.1 16.6 204 185-395 394-624 (767)
149 PRK06090 DNA polymerase III su 97.7 0.003 6.6E-08 61.5 18.0 173 197-392 13-201 (319)
150 cd01131 PilT Pilus retraction 97.7 0.00014 2.9E-09 66.3 8.2 110 211-332 2-112 (198)
151 PRK10536 hypothetical protein; 97.7 0.00044 9.5E-09 64.3 11.0 44 186-233 54-97 (262)
152 PF01695 IstB_IS21: IstB-like 97.7 5.5E-05 1.2E-09 67.4 4.9 36 210-245 47-82 (178)
153 KOG2004 Mitochondrial ATP-depe 97.7 0.00017 3.7E-09 74.7 8.7 158 187-361 411-596 (906)
154 KOG0735 AAA+-type ATPase [Post 97.6 0.0012 2.7E-08 68.5 14.6 164 209-392 430-616 (952)
155 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00051 1.1E-08 70.0 11.7 174 186-385 189-395 (802)
156 PRK06964 DNA polymerase III su 97.6 0.0028 6E-08 62.4 16.5 90 291-391 132-224 (342)
157 PRK04132 replication factor C 97.6 0.0018 3.8E-08 70.8 16.4 155 215-390 569-729 (846)
158 KOG0744 AAA+-type ATPase [Post 97.6 0.00032 6.8E-09 66.1 9.2 81 210-304 177-263 (423)
159 PRK10865 protein disaggregatio 97.6 0.0011 2.5E-08 73.6 15.3 50 187-236 568-624 (857)
160 TIGR00763 lon ATP-dependent pr 97.6 0.0003 6.5E-09 77.6 10.7 50 188-237 321-374 (775)
161 TIGR02639 ClpA ATP-dependent C 97.6 0.0013 2.9E-08 72.2 15.3 49 187-235 454-509 (731)
162 KOG0991 Replication factor C, 97.6 0.00043 9.3E-09 62.2 9.2 50 185-236 25-74 (333)
163 KOG0741 AAA+-type ATPase [Post 97.6 0.0019 4.2E-08 64.8 14.4 133 208-361 536-686 (744)
164 PTZ00494 tuzin-like protein; P 97.6 0.0042 9E-08 61.6 16.3 197 152-361 329-544 (664)
165 PRK11889 flhF flagellar biosyn 97.6 0.0023 5E-08 63.2 14.6 29 209-237 240-268 (436)
166 KOG0730 AAA+-type ATPase [Post 97.6 0.00027 5.8E-09 72.8 8.5 152 208-386 466-637 (693)
167 PRK04296 thymidine kinase; Pro 97.6 0.00013 2.8E-09 66.0 5.6 110 211-330 3-117 (190)
168 COG0470 HolB ATPase involved i 97.5 0.0012 2.7E-08 65.2 13.0 149 189-355 3-175 (325)
169 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0012 2.6E-08 73.7 14.0 51 187-237 565-622 (852)
170 PRK08939 primosomal protein Dn 97.5 0.0004 8.6E-09 67.5 9.0 100 210-329 156-261 (306)
171 PRK11331 5-methylcytosine-spec 97.5 0.00023 4.9E-09 71.6 7.3 46 187-236 175-220 (459)
172 COG0542 clpA ATP-binding subun 97.5 0.00067 1.4E-08 72.5 11.2 118 187-314 491-618 (786)
173 PRK12608 transcription termina 97.5 0.00037 7.9E-09 68.5 8.3 100 199-302 123-231 (380)
174 PRK06921 hypothetical protein; 97.5 0.00036 7.9E-09 66.4 8.2 36 210-245 117-153 (266)
175 TIGR02902 spore_lonB ATP-depen 97.5 0.0013 2.7E-08 69.3 12.9 47 185-233 63-109 (531)
176 PRK00771 signal recognition pa 97.5 0.0034 7.3E-08 63.9 15.5 29 209-237 94-122 (437)
177 PRK11608 pspF phage shock prot 97.5 0.0041 9E-08 61.3 15.4 47 187-233 6-52 (326)
178 PRK06835 DNA replication prote 97.5 0.00022 4.8E-09 69.8 6.3 35 211-245 184-218 (329)
179 PF14532 Sigma54_activ_2: Sigm 97.5 0.00014 2.9E-09 62.2 4.3 45 190-234 1-45 (138)
180 PRK09361 radB DNA repair and r 97.4 0.00025 5.4E-09 66.1 6.2 49 197-245 10-58 (225)
181 PRK08699 DNA polymerase III su 97.4 0.00091 2E-08 65.6 10.3 89 291-389 113-203 (325)
182 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0021 4.4E-08 65.8 12.6 130 210-363 545-694 (802)
183 COG0542 clpA ATP-binding subun 97.4 0.0024 5.1E-08 68.5 13.8 157 185-361 168-346 (786)
184 PF13177 DNA_pol3_delta2: DNA 97.4 0.00095 2.1E-08 58.6 9.3 139 191-349 1-162 (162)
185 TIGR01420 pilT_fam pilus retra 97.4 0.0004 8.6E-09 69.0 7.5 110 210-330 122-231 (343)
186 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00095 2.1E-08 74.0 11.1 50 187-236 566-622 (852)
187 PRK11034 clpA ATP-dependent Cl 97.4 0.0015 3.3E-08 71.1 12.4 49 187-235 458-513 (758)
188 TIGR02974 phageshock_pspF psp 97.4 0.0024 5.2E-08 62.9 12.8 45 189-233 1-45 (329)
189 TIGR01817 nifA Nif-specific re 97.4 0.0024 5.3E-08 67.7 13.8 51 184-234 193-243 (534)
190 COG1484 DnaC DNA replication p 97.4 0.00061 1.3E-08 64.4 8.3 73 209-300 104-176 (254)
191 PF07728 AAA_5: AAA domain (dy 97.4 0.00016 3.4E-09 61.9 3.9 22 213-234 2-23 (139)
192 PRK14974 cell division protein 97.4 0.0043 9.2E-08 60.9 14.2 29 209-237 139-167 (336)
193 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00088 1.9E-08 63.8 9.0 103 195-312 68-170 (264)
194 cd01120 RecA-like_NTPases RecA 97.3 0.00033 7.2E-09 61.4 5.6 34 212-245 1-34 (165)
195 PRK06067 flagellar accessory p 97.3 0.00065 1.4E-08 63.8 7.8 49 197-245 12-60 (234)
196 TIGR00064 ftsY signal recognit 97.3 0.0047 1E-07 59.1 13.6 29 209-237 71-99 (272)
197 cd00544 CobU Adenosylcobinamid 97.3 0.00031 6.6E-09 61.9 5.0 80 212-300 1-82 (169)
198 PF00448 SRP54: SRP54-type pro 97.3 0.00061 1.3E-08 61.7 7.1 87 210-300 1-92 (196)
199 COG2607 Predicted ATPase (AAA+ 97.3 0.0023 5.1E-08 58.0 10.4 56 184-240 57-115 (287)
200 PRK10787 DNA-binding ATP-depen 97.3 0.0061 1.3E-07 67.0 15.9 51 187-237 322-376 (784)
201 PRK05022 anaerobic nitric oxid 97.3 0.0077 1.7E-07 63.3 16.1 51 185-235 185-235 (509)
202 PF03215 Rad17: Rad17 cell cyc 97.3 0.0014 3.1E-08 68.0 10.4 49 187-235 19-70 (519)
203 cd01394 radB RadB. The archaea 97.3 0.00043 9.4E-09 64.2 6.0 50 196-245 5-54 (218)
204 TIGR02237 recomb_radB DNA repa 97.3 0.00069 1.5E-08 62.4 7.3 45 201-245 3-47 (209)
205 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00018 4E-09 70.2 3.4 50 187-236 51-104 (361)
206 PF04665 Pox_A32: Poxvirus A32 97.3 0.0026 5.6E-08 58.9 10.7 35 211-245 14-48 (241)
207 KOG2228 Origin recognition com 97.3 0.0034 7.4E-08 59.8 11.5 176 185-361 22-219 (408)
208 PRK15429 formate hydrogenlyase 97.3 0.011 2.5E-07 64.6 17.6 49 186-234 375-423 (686)
209 cd01121 Sms Sms (bacterial rad 97.3 0.0012 2.6E-08 65.9 9.1 97 196-300 68-167 (372)
210 COG1066 Sms Predicted ATP-depe 97.3 0.0015 3.3E-08 63.9 9.3 97 195-300 78-177 (456)
211 PF02562 PhoH: PhoH-like prote 97.2 0.00093 2E-08 60.4 7.2 127 192-329 5-156 (205)
212 PF13207 AAA_17: AAA domain; P 97.2 0.00023 5E-09 59.1 3.1 23 212-234 1-23 (121)
213 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0041 8.9E-08 63.0 12.2 43 193-235 88-135 (634)
214 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.00072 1.6E-08 58.5 6.0 117 211-330 3-139 (159)
215 cd01393 recA_like RecA is a b 97.2 0.0018 3.9E-08 60.4 9.3 49 197-245 6-60 (226)
216 COG1618 Predicted nucleotide k 97.2 0.00031 6.7E-09 59.5 3.6 34 211-244 6-40 (179)
217 CHL00095 clpC Clp protease ATP 97.2 0.0023 4.9E-08 71.3 11.4 118 187-314 509-636 (821)
218 KOG0731 AAA+-type ATPase conta 97.2 0.0064 1.4E-07 64.8 14.0 179 185-389 309-521 (774)
219 KOG2035 Replication factor C, 97.2 0.0011 2.4E-08 61.3 7.2 208 187-411 13-258 (351)
220 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0011 2.4E-08 62.6 7.5 55 209-266 68-122 (274)
221 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0013 2.8E-08 61.8 7.7 37 198-234 7-43 (235)
222 KOG0734 AAA+-type ATPase conta 97.1 0.0011 2.3E-08 66.7 7.1 49 187-235 304-362 (752)
223 COG1223 Predicted ATPase (AAA+ 97.1 0.0077 1.7E-07 55.3 11.9 174 187-385 121-318 (368)
224 PF07693 KAP_NTPase: KAP famil 97.1 0.033 7.2E-07 55.0 17.7 44 194-237 3-47 (325)
225 TIGR00959 ffh signal recogniti 97.1 0.018 4E-07 58.4 15.8 26 210-235 99-124 (428)
226 PRK04328 hypothetical protein; 97.1 0.0033 7.2E-08 59.5 9.7 49 197-245 10-58 (249)
227 cd01124 KaiC KaiC is a circadi 97.1 0.0022 4.8E-08 57.7 8.2 33 213-245 2-34 (187)
228 PRK10733 hflB ATP-dependent me 97.1 0.0053 1.2E-07 66.2 12.3 150 211-385 186-356 (644)
229 COG0488 Uup ATPase components 97.1 0.011 2.3E-07 61.8 13.8 131 209-347 347-511 (530)
230 PRK07667 uridine kinase; Provi 97.1 0.00099 2.2E-08 60.4 5.6 42 196-237 3-44 (193)
231 TIGR02012 tigrfam_recA protein 97.1 0.0016 3.4E-08 63.3 7.2 49 197-245 41-90 (321)
232 PRK05541 adenylylsulfate kinas 97.0 0.0023 5E-08 57.1 7.9 37 209-245 6-42 (176)
233 cd00983 recA RecA is a bacter 97.0 0.0016 3.5E-08 63.2 7.3 49 197-245 41-90 (325)
234 PRK06696 uridine kinase; Valid 97.0 0.0008 1.7E-08 62.6 5.0 45 192-236 3-48 (223)
235 PRK12726 flagellar biosynthesi 97.0 0.012 2.6E-07 58.0 13.2 37 209-245 205-241 (407)
236 PHA00729 NTP-binding motif con 97.0 0.0017 3.8E-08 59.4 6.9 26 210-235 17-42 (226)
237 KOG0727 26S proteasome regulat 97.0 0.0016 3.5E-08 59.2 6.6 50 188-237 156-216 (408)
238 PF13604 AAA_30: AAA domain; P 97.0 0.002 4.4E-08 58.5 7.3 114 196-329 7-131 (196)
239 PRK10867 signal recognition pa 97.0 0.026 5.6E-07 57.4 15.9 29 209-237 99-127 (433)
240 PRK14722 flhF flagellar biosyn 97.0 0.0071 1.5E-07 60.1 11.6 85 210-300 137-224 (374)
241 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0042 9E-08 53.4 8.9 104 209-334 25-132 (144)
242 PRK11823 DNA repair protein Ra 97.0 0.0029 6.3E-08 65.0 9.2 98 196-301 66-166 (446)
243 PRK08533 flagellar accessory p 97.0 0.0024 5.1E-08 59.6 7.7 48 198-245 12-59 (230)
244 PF01583 APS_kinase: Adenylyls 97.0 0.00052 1.1E-08 59.1 2.8 36 210-245 2-37 (156)
245 COG0464 SpoVK ATPases of the A 97.0 0.0042 9E-08 65.3 10.2 151 209-384 275-445 (494)
246 cd03214 ABC_Iron-Siderophores_ 97.0 0.0061 1.3E-07 54.6 9.7 122 209-334 24-163 (180)
247 PRK09354 recA recombinase A; P 97.0 0.0022 4.8E-08 62.8 7.3 49 197-245 46-95 (349)
248 PRK05800 cobU adenosylcobinami 96.9 0.00064 1.4E-08 60.0 3.3 23 212-234 3-25 (170)
249 PRK07261 topology modulation p 96.9 0.0034 7.3E-08 55.7 7.8 23 212-234 2-24 (171)
250 KOG0728 26S proteasome regulat 96.9 0.022 4.8E-07 51.9 12.8 147 191-361 151-331 (404)
251 KOG0729 26S proteasome regulat 96.9 0.0094 2E-07 54.8 10.4 52 190-246 180-242 (435)
252 TIGR00416 sms DNA repair prote 96.9 0.0039 8.5E-08 64.1 9.1 51 195-245 79-129 (454)
253 cd03238 ABC_UvrA The excision 96.9 0.0057 1.2E-07 54.3 9.0 118 209-333 20-153 (176)
254 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0048 1E-07 54.4 8.5 118 209-332 26-151 (166)
255 PRK12723 flagellar biosynthesi 96.9 0.011 2.3E-07 59.3 11.7 27 209-235 173-199 (388)
256 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0047 1E-07 54.9 8.2 106 209-334 24-137 (177)
257 PRK11388 DNA-binding transcrip 96.9 0.046 1E-06 59.4 17.3 50 185-234 323-372 (638)
258 COG4088 Predicted nucleotide k 96.8 0.0083 1.8E-07 53.2 9.0 28 211-238 2-29 (261)
259 PRK10820 DNA-binding transcrip 96.8 0.026 5.6E-07 59.5 14.6 49 184-232 201-249 (520)
260 TIGR00708 cobA cob(I)alamin ad 96.8 0.0073 1.6E-07 52.9 8.7 116 210-330 5-141 (173)
261 TIGR02524 dot_icm_DotB Dot/Icm 96.8 0.0021 4.4E-08 63.9 5.9 97 210-312 134-233 (358)
262 PRK05703 flhF flagellar biosyn 96.8 0.026 5.7E-07 57.5 14.0 26 210-235 221-246 (424)
263 PF10236 DAP3: Mitochondrial r 96.8 0.036 7.8E-07 54.1 14.4 48 342-389 258-306 (309)
264 cd03247 ABCC_cytochrome_bd The 96.8 0.0082 1.8E-07 53.6 9.2 116 209-333 27-161 (178)
265 PF00437 T2SE: Type II/IV secr 96.8 0.00087 1.9E-08 64.4 3.1 128 187-329 104-232 (270)
266 PRK10416 signal recognition pa 96.8 0.017 3.7E-07 56.5 12.0 29 209-237 113-141 (318)
267 KOG0652 26S proteasome regulat 96.8 0.041 8.9E-07 50.6 13.4 50 187-236 171-231 (424)
268 cd03115 SRP The signal recogni 96.8 0.0098 2.1E-07 52.8 9.6 26 212-237 2-27 (173)
269 KOG1969 DNA replication checkp 96.8 0.0039 8.5E-08 65.2 7.7 28 207-234 323-350 (877)
270 PRK12724 flagellar biosynthesi 96.8 0.025 5.5E-07 56.7 13.1 25 210-234 223-247 (432)
271 PRK15455 PrkA family serine pr 96.8 0.0013 2.8E-08 67.9 4.1 51 187-237 76-130 (644)
272 PRK08118 topology modulation p 96.8 0.001 2.2E-08 58.8 3.0 24 212-235 3-26 (167)
273 TIGR02533 type_II_gspE general 96.8 0.0053 1.2E-07 63.7 8.8 101 196-312 231-332 (486)
274 cd03216 ABC_Carb_Monos_I This 96.8 0.0047 1E-07 54.3 7.3 118 209-334 25-147 (163)
275 cd03228 ABCC_MRP_Like The MRP 96.8 0.0068 1.5E-07 53.8 8.4 117 209-333 27-159 (171)
276 TIGR02655 circ_KaiC circadian 96.8 0.0024 5.2E-08 66.6 6.1 52 194-245 247-298 (484)
277 cd02027 APSK Adenosine 5'-phos 96.7 0.0079 1.7E-07 52.0 8.4 24 212-235 1-24 (149)
278 KOG0738 AAA+-type ATPase [Post 96.7 0.021 4.5E-07 55.6 11.7 71 162-236 191-271 (491)
279 TIGR01425 SRP54_euk signal rec 96.7 0.054 1.2E-06 54.8 15.3 29 209-237 99-127 (429)
280 TIGR02238 recomb_DMC1 meiotic 96.7 0.0045 9.8E-08 60.3 7.5 37 196-232 82-118 (313)
281 PRK13531 regulatory ATPase Rav 96.7 0.0022 4.9E-08 65.2 5.5 46 187-236 20-65 (498)
282 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0035 7.7E-08 62.3 6.7 102 209-329 61-167 (362)
283 TIGR02525 plasmid_TraJ plasmid 96.7 0.0033 7.2E-08 62.6 6.4 96 210-312 149-246 (372)
284 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.013 2.7E-07 68.2 11.6 28 208-235 1628-1655(2281)
285 PF13238 AAA_18: AAA domain; P 96.7 0.0012 2.6E-08 55.3 2.8 22 213-234 1-22 (129)
286 KOG0726 26S proteasome regulat 96.7 0.0097 2.1E-07 55.5 8.7 51 188-238 186-247 (440)
287 PF08423 Rad51: Rad51; InterP 96.7 0.0033 7.1E-08 59.6 6.0 37 197-233 25-61 (256)
288 KOG0739 AAA+-type ATPase [Post 96.7 0.013 2.8E-07 54.9 9.4 174 187-386 133-335 (439)
289 COG0468 RecA RecA/RadA recombi 96.7 0.0043 9.3E-08 58.9 6.5 48 199-246 49-96 (279)
290 TIGR03499 FlhF flagellar biosy 96.6 0.0064 1.4E-07 58.6 7.8 29 209-237 193-221 (282)
291 PF07726 AAA_3: ATPase family 96.6 0.0014 3.1E-08 53.9 2.7 28 213-240 2-29 (131)
292 COG1136 SalX ABC-type antimicr 96.6 0.017 3.8E-07 52.8 10.0 56 279-335 148-209 (226)
293 cd03230 ABC_DR_subfamily_A Thi 96.6 0.014 3.1E-07 51.8 9.4 118 209-334 25-160 (173)
294 COG2884 FtsE Predicted ATPase 96.6 0.014 3E-07 51.3 8.7 56 279-336 143-204 (223)
295 cd01125 repA Hexameric Replica 96.6 0.015 3.3E-07 54.7 10.1 24 212-235 3-26 (239)
296 PRK00889 adenylylsulfate kinas 96.6 0.0085 1.8E-07 53.4 7.9 29 209-237 3-31 (175)
297 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0028 6.2E-08 60.3 5.1 41 205-245 31-71 (259)
298 PF00910 RNA_helicase: RNA hel 96.6 0.0011 2.5E-08 53.6 2.0 26 213-238 1-26 (107)
299 COG2804 PulE Type II secretory 96.6 0.012 2.6E-07 59.7 9.5 112 196-327 247-359 (500)
300 PF00485 PRK: Phosphoribulokin 96.6 0.0016 3.5E-08 59.1 3.2 26 212-237 1-26 (194)
301 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0089 1.9E-07 53.6 8.0 23 212-234 1-23 (183)
302 TIGR02858 spore_III_AA stage I 96.6 0.007 1.5E-07 57.6 7.5 115 210-331 111-231 (270)
303 PRK07132 DNA polymerase III su 96.6 0.46 1E-05 46.0 20.0 167 196-391 5-184 (299)
304 COG4608 AppF ABC-type oligopep 96.6 0.0095 2.1E-07 55.5 8.0 124 209-335 38-176 (268)
305 KOG0651 26S proteasome regulat 96.6 0.011 2.4E-07 55.7 8.4 30 209-238 165-194 (388)
306 cd01130 VirB11-like_ATPase Typ 96.6 0.0027 5.8E-08 57.2 4.4 91 210-309 25-118 (186)
307 TIGR02329 propionate_PrpR prop 96.6 0.038 8.3E-07 57.9 13.4 48 186-233 211-258 (526)
308 KOG0737 AAA+-type ATPase [Post 96.5 0.013 2.8E-07 56.7 8.9 32 209-240 126-157 (386)
309 PRK10436 hypothetical protein; 96.5 0.011 2.3E-07 60.8 8.9 102 195-312 206-308 (462)
310 KOG0743 AAA+-type ATPase [Post 96.5 0.032 7E-07 55.6 11.8 150 210-396 235-413 (457)
311 PLN03187 meiotic recombination 96.5 0.013 2.7E-07 57.8 9.0 37 197-233 113-149 (344)
312 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.004 8.7E-08 58.5 5.4 50 196-245 7-56 (237)
313 cd02019 NK Nucleoside/nucleoti 96.5 0.0019 4.2E-08 47.5 2.6 23 212-234 1-23 (69)
314 PRK06731 flhF flagellar biosyn 96.5 0.042 9.1E-07 52.3 12.2 27 210-236 75-101 (270)
315 KOG0735 AAA+-type ATPase [Post 96.5 0.04 8.6E-07 57.8 12.6 175 189-388 669-872 (952)
316 PF13671 AAA_33: AAA domain; P 96.5 0.002 4.4E-08 55.1 3.0 24 212-235 1-24 (143)
317 TIGR02788 VirB11 P-type DNA tr 96.5 0.007 1.5E-07 59.2 7.0 111 209-330 143-254 (308)
318 PF03308 ArgK: ArgK protein; 96.5 0.0054 1.2E-07 56.9 5.7 41 197-237 16-56 (266)
319 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.0099 2.1E-07 55.3 7.5 53 280-334 146-204 (254)
320 PF10137 TIR-like: Predicted n 96.5 0.0098 2.1E-07 49.1 6.7 61 13-76 1-61 (125)
321 PRK08233 hypothetical protein; 96.5 0.0023 5E-08 57.3 3.3 26 210-235 3-28 (182)
322 PRK05986 cob(I)alamin adenolsy 96.5 0.0069 1.5E-07 53.9 6.1 119 210-330 22-159 (191)
323 PRK15424 propionate catabolism 96.5 0.013 2.9E-07 61.2 9.3 48 186-233 218-265 (538)
324 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0035 7.5E-08 52.5 3.9 41 195-235 7-47 (133)
325 PRK06762 hypothetical protein; 96.4 0.0025 5.4E-08 56.2 3.3 25 210-234 2-26 (166)
326 PF08433 KTI12: Chromatin asso 96.4 0.0061 1.3E-07 58.0 6.0 27 211-237 2-28 (270)
327 cd03246 ABCC_Protease_Secretio 96.4 0.014 2.9E-07 51.9 7.8 118 209-333 27-160 (173)
328 TIGR03600 phage_DnaB phage rep 96.4 0.084 1.8E-06 54.2 14.7 71 189-267 174-245 (421)
329 COG2805 PilT Tfp pilus assembl 96.4 0.011 2.4E-07 55.5 7.3 93 209-312 124-219 (353)
330 PTZ00301 uridine kinase; Provi 96.4 0.0028 6.1E-08 58.0 3.4 28 210-237 3-30 (210)
331 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.0039 8.6E-08 57.4 4.4 23 210-232 29-51 (213)
332 PRK05480 uridine/cytidine kina 96.4 0.0032 6.9E-08 57.9 3.7 27 208-234 4-30 (209)
333 cd03237 ABC_RNaseL_inhibitor_d 96.4 0.032 6.9E-07 52.7 10.5 26 210-235 25-50 (246)
334 PRK10923 glnG nitrogen regulat 96.4 0.044 9.6E-07 57.2 12.7 49 186-234 137-185 (469)
335 PF06068 TIP49: TIP49 C-termin 96.4 0.011 2.5E-07 57.5 7.4 55 185-239 22-79 (398)
336 COG0467 RAD55 RecA-superfamily 96.3 0.0047 1E-07 59.0 4.8 47 199-245 12-58 (260)
337 PRK12727 flagellar biosynthesi 96.3 0.02 4.4E-07 58.9 9.3 29 209-237 349-377 (559)
338 KOG1051 Chaperone HSP104 and r 96.3 0.028 6E-07 61.4 10.8 103 188-303 563-672 (898)
339 TIGR02782 TrbB_P P-type conjug 96.3 0.011 2.4E-07 57.3 7.2 89 210-309 132-222 (299)
340 PF06745 KaiC: KaiC; InterPro 96.3 0.0036 7.8E-08 58.4 3.7 49 197-245 6-55 (226)
341 COG0465 HflB ATP-dependent Zn 96.3 0.034 7.4E-07 58.1 11.0 176 186-388 149-357 (596)
342 TIGR01069 mutS2 MutS2 family p 96.3 0.007 1.5E-07 66.4 6.3 24 210-233 322-345 (771)
343 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.012 2.5E-07 51.4 6.6 117 210-335 25-146 (157)
344 PF00406 ADK: Adenylate kinase 96.3 0.0056 1.2E-07 53.0 4.5 88 215-311 1-94 (151)
345 PF03266 NTPase_1: NTPase; In 96.3 0.0046 9.9E-08 54.5 3.9 24 213-236 2-25 (168)
346 cd01122 GP4d_helicase GP4d_hel 96.2 0.021 4.4E-07 54.9 8.7 38 208-245 28-66 (271)
347 PRK00131 aroK shikimate kinase 96.2 0.0037 8.1E-08 55.5 3.4 26 210-235 4-29 (175)
348 PRK04040 adenylate kinase; Pro 96.2 0.0042 9.2E-08 55.9 3.6 25 211-235 3-27 (188)
349 cd03229 ABC_Class3 This class 96.2 0.017 3.7E-07 51.6 7.5 35 209-244 25-59 (178)
350 PRK09270 nucleoside triphospha 96.2 0.0059 1.3E-07 57.0 4.7 31 208-238 31-61 (229)
351 PRK03839 putative kinase; Prov 96.2 0.0036 7.9E-08 56.0 3.2 24 212-235 2-25 (180)
352 TIGR00235 udk uridine kinase. 96.2 0.0042 9.1E-08 57.0 3.7 28 208-235 4-31 (207)
353 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.039 8.4E-07 48.1 9.6 24 210-233 102-125 (157)
354 COG3854 SpoIIIAA ncharacterize 96.2 0.027 5.9E-07 50.9 8.4 109 213-329 140-253 (308)
355 COG1102 Cmk Cytidylate kinase 96.2 0.0035 7.5E-08 53.3 2.7 24 212-235 2-25 (179)
356 TIGR02915 PEP_resp_reg putativ 96.2 0.098 2.1E-06 54.2 14.1 47 187-233 139-185 (445)
357 PRK10463 hydrogenase nickel in 96.2 0.011 2.4E-07 56.3 6.3 43 198-242 94-136 (290)
358 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.0083 1.8E-07 56.0 5.4 49 197-245 7-55 (229)
359 PLN03186 DNA repair protein RA 96.2 0.017 3.8E-07 56.9 7.8 38 196-233 109-146 (342)
360 cd03232 ABC_PDR_domain2 The pl 96.2 0.025 5.3E-07 51.2 8.3 25 209-233 32-56 (192)
361 TIGR02538 type_IV_pilB type IV 96.2 0.02 4.4E-07 60.8 8.9 101 196-312 305-406 (564)
362 cd00227 CPT Chloramphenicol (C 96.2 0.0044 9.5E-08 55.2 3.3 26 210-235 2-27 (175)
363 PTZ00088 adenylate kinase 1; P 96.1 0.008 1.7E-07 55.8 5.1 23 212-234 8-30 (229)
364 COG0572 Udk Uridine kinase [Nu 96.1 0.0056 1.2E-07 55.4 3.9 29 209-237 7-35 (218)
365 PF02456 Adeno_IVa2: Adenoviru 96.1 0.17 3.6E-06 48.0 13.5 36 210-245 87-124 (369)
366 PTZ00035 Rad51 protein; Provis 96.1 0.017 3.6E-07 57.1 7.5 39 196-234 104-142 (337)
367 COG4133 CcmA ABC-type transpor 96.1 0.033 7.1E-07 48.9 8.2 28 210-237 28-55 (209)
368 cd03233 ABC_PDR_domain1 The pl 96.1 0.057 1.2E-06 49.3 10.6 27 209-235 32-58 (202)
369 PRK05973 replicative DNA helic 96.1 0.0078 1.7E-07 55.9 4.8 38 208-245 62-99 (237)
370 PF00158 Sigma54_activat: Sigm 96.1 0.0082 1.8E-07 52.9 4.7 45 189-233 1-45 (168)
371 PRK12337 2-phosphoglycerate ki 96.1 0.011 2.5E-07 59.7 6.2 27 209-235 254-280 (475)
372 smart00534 MUTSac ATPase domai 96.1 0.0028 6.1E-08 57.0 1.8 21 212-232 1-21 (185)
373 PRK05439 pantothenate kinase; 96.1 0.011 2.3E-07 57.3 5.8 29 208-236 84-112 (311)
374 COG0529 CysC Adenylylsulfate k 96.1 0.0071 1.5E-07 52.3 4.1 35 209-243 22-56 (197)
375 cd03213 ABCG_EPDR ABCG transpo 96.1 0.024 5.1E-07 51.4 7.9 26 209-234 34-59 (194)
376 COG1224 TIP49 DNA helicase TIP 96.1 0.0089 1.9E-07 57.4 5.1 56 184-239 36-94 (450)
377 TIGR00455 apsK adenylylsulfate 96.1 0.025 5.3E-07 50.8 7.9 27 209-235 17-43 (184)
378 PRK06547 hypothetical protein; 96.1 0.0054 1.2E-07 54.3 3.5 27 208-234 13-39 (172)
379 cd03215 ABC_Carb_Monos_II This 96.1 0.055 1.2E-06 48.5 10.1 27 209-235 25-51 (182)
380 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0049 1.1E-07 55.5 3.2 25 210-234 3-27 (188)
381 PF13245 AAA_19: Part of AAA d 96.1 0.0055 1.2E-07 46.0 3.0 24 210-233 10-33 (76)
382 PRK13543 cytochrome c biogenes 96.1 0.062 1.3E-06 49.6 10.6 25 209-233 36-60 (214)
383 PRK13765 ATP-dependent proteas 96.0 0.0093 2E-07 63.6 5.6 76 183-268 27-103 (637)
384 KOG0062 ATPase component of AB 96.0 0.026 5.6E-07 57.0 8.3 123 210-334 106-260 (582)
385 PF08298 AAA_PrkA: PrkA AAA do 96.0 0.02 4.2E-07 55.8 7.2 52 186-237 60-115 (358)
386 cd02028 UMPK_like Uridine mono 96.0 0.0061 1.3E-07 54.5 3.6 25 212-236 1-25 (179)
387 PRK00625 shikimate kinase; Pro 96.0 0.005 1.1E-07 54.5 3.0 24 212-235 2-25 (173)
388 cd03287 ABC_MSH3_euk MutS3 hom 96.0 0.0089 1.9E-07 55.2 4.5 24 209-232 30-53 (222)
389 PRK09544 znuC high-affinity zi 96.0 0.069 1.5E-06 50.6 10.7 26 209-234 29-54 (251)
390 PF00625 Guanylate_kin: Guanyl 96.0 0.0085 1.8E-07 53.8 4.2 35 210-244 2-36 (183)
391 PRK00279 adk adenylate kinase; 95.9 0.017 3.7E-07 53.3 6.3 23 212-234 2-24 (215)
392 PHA02244 ATPase-like protein 95.9 0.0065 1.4E-07 59.7 3.5 50 186-235 95-144 (383)
393 PRK03846 adenylylsulfate kinas 95.9 0.0095 2.1E-07 54.3 4.4 36 209-244 23-58 (198)
394 TIGR01351 adk adenylate kinase 95.9 0.015 3.2E-07 53.5 5.8 22 213-234 2-23 (210)
395 COG1703 ArgK Putative periplas 95.9 0.012 2.5E-07 55.5 4.9 41 198-238 39-79 (323)
396 COG0488 Uup ATPase components 95.9 0.073 1.6E-06 55.7 11.3 54 281-336 161-217 (530)
397 TIGR01650 PD_CobS cobaltochela 95.9 0.013 2.8E-07 56.9 5.4 49 186-238 44-92 (327)
398 PRK14738 gmk guanylate kinase; 95.9 0.0078 1.7E-07 55.2 3.7 32 202-233 5-36 (206)
399 PRK15115 response regulator Gl 95.8 0.2 4.4E-06 51.9 14.5 48 187-234 134-181 (444)
400 TIGR00390 hslU ATP-dependent p 95.8 0.013 2.8E-07 58.6 5.2 50 188-237 13-74 (441)
401 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.014 3E-07 54.3 5.2 48 198-245 4-51 (224)
402 PRK13947 shikimate kinase; Pro 95.8 0.0066 1.4E-07 53.8 2.9 25 212-236 3-27 (171)
403 COG3640 CooC CO dehydrogenase 95.8 0.028 6E-07 51.1 6.8 38 212-249 2-39 (255)
404 PRK13833 conjugal transfer pro 95.8 0.024 5.3E-07 55.3 7.0 87 211-309 145-233 (323)
405 PRK15453 phosphoribulokinase; 95.8 0.011 2.4E-07 55.8 4.5 29 208-236 3-31 (290)
406 cd02021 GntK Gluconate kinase 95.8 0.0058 1.3E-07 52.8 2.5 23 212-234 1-23 (150)
407 KOG0730 AAA+-type ATPase [Post 95.8 0.054 1.2E-06 56.4 9.6 174 188-386 185-386 (693)
408 KOG0736 Peroxisome assembly fa 95.8 0.062 1.3E-06 56.9 10.1 93 189-303 674-776 (953)
409 PF00154 RecA: recA bacterial 95.8 0.038 8.2E-07 53.7 8.1 49 197-245 39-88 (322)
410 cd00071 GMPK Guanosine monopho 95.8 0.0065 1.4E-07 51.7 2.6 26 212-237 1-26 (137)
411 COG1419 FlhF Flagellar GTP-bin 95.8 0.037 8.1E-07 54.8 8.0 26 210-235 203-228 (407)
412 TIGR02322 phosphon_PhnN phosph 95.8 0.0074 1.6E-07 53.9 3.0 25 211-235 2-26 (179)
413 COG1936 Predicted nucleotide k 95.8 0.0072 1.6E-07 52.2 2.7 20 212-231 2-21 (180)
414 PRK05917 DNA polymerase III su 95.8 0.25 5.4E-06 47.4 13.3 127 197-348 7-154 (290)
415 cd02024 NRK1 Nicotinamide ribo 95.8 0.0063 1.4E-07 54.5 2.5 23 212-234 1-23 (187)
416 KOG0740 AAA+-type ATPase [Post 95.8 0.094 2E-06 52.6 10.9 29 209-237 185-213 (428)
417 PRK09280 F0F1 ATP synthase sub 95.8 0.032 6.8E-07 56.9 7.7 91 209-302 143-249 (463)
418 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.031 6.7E-07 51.0 7.1 25 209-233 25-49 (200)
419 COG0714 MoxR-like ATPases [Gen 95.7 0.0099 2.1E-07 58.9 4.1 51 187-241 24-74 (329)
420 PRK05201 hslU ATP-dependent pr 95.7 0.015 3.2E-07 58.2 5.2 50 188-237 16-77 (443)
421 TIGR03411 urea_trans_UrtD urea 95.7 0.14 3E-06 48.2 11.8 25 209-233 27-51 (242)
422 TIGR03740 galliderm_ABC gallid 95.7 0.068 1.5E-06 49.6 9.5 26 209-234 25-50 (223)
423 cd02020 CMPK Cytidine monophos 95.7 0.007 1.5E-07 52.0 2.7 23 212-234 1-23 (147)
424 cd03243 ABC_MutS_homologs The 95.7 0.008 1.7E-07 55.0 3.1 22 211-232 30-51 (202)
425 PHA02774 E1; Provisional 95.7 0.026 5.6E-07 58.5 6.9 41 194-235 419-459 (613)
426 PRK09519 recA DNA recombinatio 95.7 0.026 5.7E-07 61.1 7.3 50 196-245 45-95 (790)
427 cd02023 UMPK Uridine monophosp 95.7 0.0068 1.5E-07 55.2 2.6 23 212-234 1-23 (198)
428 COG2401 ABC-type ATPase fused 95.7 0.03 6.5E-07 55.0 6.9 130 209-338 408-577 (593)
429 PRK12678 transcription termina 95.7 0.02 4.4E-07 59.1 6.0 92 209-303 415-515 (672)
430 PRK06217 hypothetical protein; 95.7 0.0081 1.8E-07 53.9 2.9 24 212-235 3-26 (183)
431 PF03205 MobB: Molybdopterin g 95.6 0.014 3.1E-07 49.7 4.1 35 211-245 1-36 (140)
432 cd03300 ABC_PotA_N PotA is an 95.6 0.11 2.4E-06 48.5 10.6 26 209-234 25-50 (232)
433 TIGR00764 lon_rel lon-related 95.6 0.019 4.1E-07 61.4 6.0 56 186-245 17-73 (608)
434 PRK14529 adenylate kinase; Pro 95.6 0.047 1E-06 50.3 7.8 91 213-310 3-96 (223)
435 COG2274 SunT ABC-type bacterio 95.6 0.05 1.1E-06 59.0 9.2 24 209-232 498-521 (709)
436 PRK13764 ATPase; Provisional 95.6 0.037 8.1E-07 58.4 8.0 86 210-309 257-342 (602)
437 PRK12597 F0F1 ATP synthase sub 95.6 0.035 7.6E-07 56.7 7.6 90 209-301 142-247 (461)
438 cd02025 PanK Pantothenate kina 95.6 0.0074 1.6E-07 55.9 2.4 24 212-235 1-24 (220)
439 PRK14269 phosphate ABC transpo 95.6 0.13 2.7E-06 48.7 10.9 25 209-233 27-51 (246)
440 cd03250 ABCC_MRP_domain1 Domai 95.6 0.17 3.6E-06 46.3 11.4 27 209-235 30-56 (204)
441 KOG3347 Predicted nucleotide k 95.6 0.0091 2E-07 50.0 2.6 25 210-234 7-31 (176)
442 PRK09435 membrane ATPase/prote 95.6 0.021 4.5E-07 56.0 5.6 40 198-237 44-83 (332)
443 PRK11174 cysteine/glutathione 95.6 0.039 8.5E-07 59.4 8.3 26 209-234 375-400 (588)
444 COG0378 HypB Ni2+-binding GTPa 95.6 0.015 3.2E-07 51.4 4.0 38 210-247 13-50 (202)
445 cd03240 ABC_Rad50 The catalyti 95.6 0.067 1.5E-06 48.9 8.6 20 212-231 24-43 (204)
446 PRK14737 gmk guanylate kinase; 95.5 0.011 2.5E-07 53.0 3.3 26 209-234 3-28 (186)
447 cd00464 SK Shikimate kinase (S 95.5 0.01 2.2E-07 51.4 3.0 22 213-234 2-23 (154)
448 PRK10875 recD exonuclease V su 95.5 0.048 1E-06 58.2 8.4 27 210-236 167-193 (615)
449 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.12 2.6E-06 47.3 10.2 25 209-233 33-57 (207)
450 PRK13894 conjugal transfer ATP 95.5 0.032 7E-07 54.5 6.6 87 210-308 148-236 (319)
451 TIGR01039 atpD ATP synthase, F 95.5 0.045 9.8E-07 55.6 7.7 91 209-302 142-248 (461)
452 TIGR02655 circ_KaiC circadian 95.5 0.018 4E-07 60.0 5.2 49 197-245 8-57 (484)
453 TIGR03263 guanyl_kin guanylate 95.5 0.01 2.2E-07 53.1 2.9 24 211-234 2-25 (180)
454 PRK10751 molybdopterin-guanine 95.5 0.015 3.2E-07 51.2 3.7 29 209-237 5-33 (173)
455 COG0055 AtpD F0F1-type ATP syn 95.5 0.02 4.4E-07 55.3 4.9 101 210-314 147-268 (468)
456 TIGR03522 GldA_ABC_ATP gliding 95.5 0.21 4.5E-06 48.8 12.2 25 209-233 27-51 (301)
457 PRK12339 2-phosphoglycerate ki 95.5 0.012 2.7E-07 53.2 3.3 25 210-234 3-27 (197)
458 PRK13900 type IV secretion sys 95.5 0.019 4E-07 56.6 4.8 93 209-309 159-253 (332)
459 PRK04301 radA DNA repair and r 95.5 0.039 8.4E-07 54.3 7.1 38 197-234 89-126 (317)
460 PF01078 Mg_chelatase: Magnesi 95.5 0.018 4E-07 51.8 4.3 42 187-232 3-44 (206)
461 TIGR01447 recD exodeoxyribonuc 95.5 0.086 1.9E-06 56.1 10.1 27 210-236 160-186 (586)
462 PRK13949 shikimate kinase; Pro 95.5 0.012 2.5E-07 52.1 3.1 24 212-235 3-26 (169)
463 COG0563 Adk Adenylate kinase a 95.5 0.01 2.3E-07 52.7 2.8 23 212-234 2-24 (178)
464 PF13086 AAA_11: AAA domain; P 95.5 0.019 4.1E-07 53.5 4.7 36 195-234 6-41 (236)
465 PF00006 ATP-synt_ab: ATP synt 95.5 0.02 4.3E-07 52.5 4.6 51 210-266 15-65 (215)
466 TIGR01313 therm_gnt_kin carboh 95.5 0.0087 1.9E-07 52.6 2.2 22 213-234 1-22 (163)
467 TIGR02768 TraA_Ti Ti-type conj 95.5 0.07 1.5E-06 58.6 9.7 25 24-48 177-201 (744)
468 TIGR01818 ntrC nitrogen regula 95.5 0.078 1.7E-06 55.3 9.7 48 187-234 134-181 (463)
469 PRK14526 adenylate kinase; Pro 95.4 0.031 6.6E-07 51.3 5.9 22 213-234 3-24 (211)
470 PF03193 DUF258: Protein of un 95.4 0.018 3.9E-07 49.9 4.1 35 194-233 24-58 (161)
471 COG0396 sufC Cysteine desulfur 95.4 0.22 4.8E-06 45.3 11.0 24 209-232 29-52 (251)
472 PRK00300 gmk guanylate kinase; 95.4 0.012 2.6E-07 53.9 3.2 27 209-235 4-30 (205)
473 PRK14530 adenylate kinase; Pro 95.4 0.012 2.6E-07 54.4 3.1 24 211-234 4-27 (215)
474 COG0194 Gmk Guanylate kinase [ 95.4 0.016 3.5E-07 50.8 3.7 25 210-234 4-28 (191)
475 cd01857 HSR1_MMR1 HSR1/MMR1. 95.4 0.15 3.2E-06 43.5 9.7 35 57-92 3-37 (141)
476 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.015 3.2E-07 53.2 3.6 24 209-232 28-51 (204)
477 COG5635 Predicted NTPase (NACH 95.4 0.027 5.8E-07 62.9 6.4 196 210-412 222-448 (824)
478 PRK05537 bifunctional sulfate 95.4 0.02 4.2E-07 60.7 5.0 50 187-236 369-418 (568)
479 PRK00409 recombination and DNA 95.4 0.064 1.4E-06 59.2 9.1 24 209-232 326-349 (782)
480 PRK05342 clpX ATP-dependent pr 95.4 0.023 4.9E-07 57.6 5.3 48 188-235 72-133 (412)
481 PRK11361 acetoacetate metaboli 95.4 0.35 7.6E-06 50.3 14.4 47 187-233 143-189 (457)
482 COG3910 Predicted ATPase [Gene 95.4 0.13 2.9E-06 45.1 9.0 24 209-232 36-59 (233)
483 COG1428 Deoxynucleoside kinase 95.4 0.012 2.7E-07 52.6 2.9 26 210-235 4-29 (216)
484 TIGR03574 selen_PSTK L-seryl-t 95.4 0.013 2.7E-07 55.6 3.2 25 212-236 1-25 (249)
485 TIGR02868 CydC thiol reductant 95.4 0.067 1.5E-06 56.8 9.0 26 209-234 360-385 (529)
486 PRK14527 adenylate kinase; Pro 95.4 0.014 3E-07 52.8 3.3 26 209-234 5-30 (191)
487 PF13521 AAA_28: AAA domain; P 95.4 0.012 2.6E-07 51.7 2.8 21 213-233 2-22 (163)
488 TIGR02236 recomb_radA DNA repa 95.4 0.051 1.1E-06 53.3 7.5 39 197-235 82-120 (310)
489 COG5008 PilU Tfp pilus assembl 95.3 0.044 9.5E-07 50.6 6.3 95 209-312 126-221 (375)
490 PF06414 Zeta_toxin: Zeta toxi 95.3 0.021 4.6E-07 52.0 4.4 28 208-235 13-40 (199)
491 cd00046 DEXDc DEAD-like helica 95.3 0.079 1.7E-06 44.4 7.8 25 212-236 2-26 (144)
492 PRK13948 shikimate kinase; Pro 95.3 0.015 3.3E-07 51.9 3.4 27 209-235 9-35 (182)
493 cd00820 PEPCK_HprK Phosphoenol 95.3 0.017 3.7E-07 46.2 3.2 23 209-231 14-36 (107)
494 KOG3928 Mitochondrial ribosome 95.3 0.42 9E-06 47.3 13.1 53 341-396 404-460 (461)
495 TIGR03375 type_I_sec_LssB type 95.3 0.082 1.8E-06 58.2 9.6 26 209-234 490-515 (694)
496 PRK08972 fliI flagellum-specif 95.3 0.047 1E-06 55.2 6.9 86 209-302 161-263 (444)
497 TIGR00665 DnaB replicative DNA 95.3 0.2 4.4E-06 51.7 11.9 71 189-267 175-246 (434)
498 KOG0066 eIF2-interacting prote 95.3 0.074 1.6E-06 52.6 8.0 25 209-233 612-636 (807)
499 KOG0780 Signal recognition par 95.3 0.5 1.1E-05 46.3 13.4 30 208-237 99-128 (483)
500 COG1117 PstB ABC-type phosphat 95.3 0.15 3.3E-06 45.8 9.2 50 282-334 158-213 (253)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.7e-87 Score=753.86 Aligned_cols=514 Identities=42% Similarity=0.669 Sum_probs=457.0
Q ss_pred CCCC-CCCCCCcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCccc
Q 009845 1 MAST-SSSSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYAS 79 (524)
Q Consensus 1 ~~~~-~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~ 79 (524)
|||| |+++.++|||||||+|+|+|++|++||+++|.++||++|.|+ ++.+|+.|.+++.+||++|+++|||||++|++
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 6666 456899999999999999999999999999999999999987 79999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhHhhCCCeeeeeeeecCCcccccccCcchhhhhhhhhhccCChHHHHHHHHHhhhcccCCCCCCCCC
Q 009845 80 SKWCLNELVKILECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMNI 159 (524)
Q Consensus 80 s~~~~~El~~~~~~~~~~~~~v~pv~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 159 (524)
|+||++||++|++|++..++.|+||||+|+|+|||+|+|.|+++|.+++.+. ..+++++|++||+++++++|+++..+
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCC
Confidence 9999999999999999999999999999999999999999999999987753 34679999999999999999999988
Q ss_pred chhhHHHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc
Q 009845 160 RPEAKLVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE 239 (524)
Q Consensus 160 ~~~~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 239 (524)
..|+++|++|+++|.+++.. .++.....+|||+.++++|..+|....+++++|+|+||||+||||||+.+|+++..+|+
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhcc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 99999999999999999988 67778899999999999999999877778999999999999999999999999999999
Q ss_pred ceEEEEeec--cc---cc-----cCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHHHHHH
Q 009845 240 GKCFMANVR--EE---SE-----KGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYL 309 (524)
Q Consensus 240 ~~~~~~~~~--~~---~~-----~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l 309 (524)
+.+|+.... .. .. .......+..+++.++.... ... ......+++.++++|+||||||+|+..+++.+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~-~~~-~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK-DIK-IYHLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCC-Ccc-cCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 988875421 10 00 00112334455555532211 111 11235678889999999999999999999999
Q ss_pred hcCCCCCCCCcEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 310 TGGLDQFGPGSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 310 ~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
.....++++|++||||||+..++...+.. ..|+++.|+.++|++||++.+|+...+++.+.+++.+|+++|+|+||||
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 88777888999999999999998776666 7899999999999999999999887777788899999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhcCCCccHHHHHhhccccCCh-hhHhHhhhhccccCCCCHHHHHHHHHhcCc----cH
Q 009845 390 RVLGSFLHQKSKLEWENALENLKMISDPDIYDVLKISYNELKL-EEKNIFLDIACFFAGEDKDFVLRILEVSNC----VL 464 (524)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~~~~~~~~----~l 464 (524)
+++|+.|++++..+|+..+++++..++..+..+|+.||+.|++ .+|.+|+++|||+.+.+.+.+..++...+. .+
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 9999999999999999999999988888899999999999986 599999999999999999988888877665 79
Q ss_pred HHHhhCCCceecCCCeEEccHHHHHHHHHHHhhhCCCCCCCcccccChhhHHHHHhhCCC
Q 009845 465 NVLVHKSLITLSYSNKLQMHDLLQEMGREIVRQEFVKEPGKRSRLWYHEDVYHVLKKNKV 524 (524)
Q Consensus 465 ~~L~~~sLi~~~~~~~~~mH~lvr~~a~~~~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~ 524 (524)
+.|++++||+.. .+++.||+++|+||++++++++ ..|++|+|+|+++||+++|.+++|
T Consensus 473 ~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g 530 (1153)
T PLN03210 473 KNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTG 530 (1153)
T ss_pred HHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcc
Confidence 999999999987 6789999999999999999987 689999999999999999999886
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=289.95 Aligned_cols=160 Identities=33% Similarity=0.504 Sum_probs=146.3
Q ss_pred CCCCCCCCcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchh
Q 009845 3 STSSSSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKW 82 (524)
Q Consensus 3 ~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~ 82 (524)
.||++...+|||||||+|+|+|++|++||+++|+++||+||+|++++.+|+.|.+.|.+||++|+++|+|||++|++|.|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhCCCeeeeeeeecCCcccccc-cCcchhhhhhhhhhccCChHHHHHHHHHhhhcccCCCCCCCC-Cc
Q 009845 83 CLNELVKILECKSMNGQMVVPVFYHVDPSDVRKQ-NGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMN-IR 160 (524)
Q Consensus 83 ~~~El~~~~~~~~~~~~~v~pv~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~ 160 (524)
|++||++++++. +.|+||||+|+|++||+| .|. ...+++++|++||.++++++|+++.. .+
T Consensus 98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~ 160 (187)
T PLN03194 98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKG 160 (187)
T ss_pred HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 999999999864 589999999999999997 332 13478999999999999999997754 47
Q ss_pred hhhHHHHHHHHHHHhhhhc
Q 009845 161 PEAKLVDEIINDILKKLKA 179 (524)
Q Consensus 161 ~~~~~i~~i~~~v~~~l~~ 179 (524)
+|+++|++|+..|.++|-.
T Consensus 161 ~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 161 NWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 7999999999999988754
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-40 Score=352.71 Aligned_cols=300 Identities=29% Similarity=0.384 Sum_probs=260.1
Q ss_pred cccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh---hcccccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 190 VGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL---ISWEFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 190 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
||.+..++.+.+.|..... ++++|+||||+||||||++++++ +..+|+..+|+.... . .+...++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk----~-f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK----E-FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc----c-ccHHhHHHHHHH
Confidence 9999999999999975433 89999999999999999999985 567899999998333 3 778899999999
Q ss_pred hhcccccccCC---CCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHH-hCCCCcce
Q 009845 267 EVLDENIKIRT---PDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDD-FGVLNTNI 342 (524)
Q Consensus 267 ~l~~~~~~~~~---~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~-~~~~~~~~ 342 (524)
.++........ .+....+.+.|+++|+||||||+|+..+|+.+..+++...+||+|++|||+..+... ++.. ..
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--YP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--cc
Confidence 87764433322 267788999999999999999999999999999999887789999999999999988 7665 88
Q ss_pred EEeCCCCHHHHHHHHHhhhcCCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCC-CHHHHHHHHHHhhcC------
Q 009845 343 YEVNGLEYHEALELFCNFAFKHD-YCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQK-SKLEWENALENLKMI------ 414 (524)
Q Consensus 343 ~~l~~L~~~ea~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-~~~~~~~~l~~l~~~------ 414 (524)
++++.|+.+|||.||++.++... ...+..++++++++++|+|+|||+.++|..|+.+ +..+|+.+...+...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999997653 2334478999999999999999999999999986 567999999987654
Q ss_pred -CCccHHHHHhhccccCChhhHhHhhhhccccCC--CCHHHHHHHHHhcCc----------------cHHHHhhCCCcee
Q 009845 415 -SDPDIYDVLKISYNELKLEEKNIFLDIACFFAG--EDKDFVLRILEVSNC----------------VLNVLVHKSLITL 475 (524)
Q Consensus 415 -~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~----------------~l~~L~~~sLi~~ 475 (524)
..+.+..++..||+.|+++.|.||+|||.||.+ ++.+.+...|.++|+ ++..|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 135688999999999999999999999999998 578999999999885 8999999999987
Q ss_pred cCC----CeEEccHHHHHHHHHHHhhh
Q 009845 476 SYS----NKLQMHDLLQEMGREIVRQE 498 (524)
Q Consensus 476 ~~~----~~~~mH~lvr~~a~~~~~~~ 498 (524)
... ..+.|||+||++|..++++.
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccc
Confidence 532 56999999999999999843
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-36 Score=296.76 Aligned_cols=264 Identities=33% Similarity=0.499 Sum_probs=204.8
Q ss_pred cchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh--hcccccceEEEEeeccccccCcChHHHHHHHHHhhc
Q 009845 192 LNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL--ISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL 269 (524)
Q Consensus 192 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 269 (524)
||.++++|.+.|....++.++|+|+|+||+||||||.+++++ ...+|+..+|+..... .....++..++..++
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccc
Confidence 789999999999876678999999999999999999999998 8889988888773322 344788888888887
Q ss_pred cccccc--CCC--CchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCCCCcceEEe
Q 009845 270 DENIKI--RTP--DLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGVLNTNIYEV 345 (524)
Q Consensus 270 ~~~~~~--~~~--~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~l 345 (524)
...... ... .....+.+.+.++++||||||+++...++.+...++....+++||||||+..+....+.. ...++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 764432 111 677888999999999999999999999988877776666799999999999876655431 378999
Q ss_pred CCCCHHHHHHHHHhhhcCCC-CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCC-CHHHHHHHHHHhhcCC------Cc
Q 009845 346 NGLEYHEALELFCNFAFKHD-YCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQK-SKLEWENALENLKMIS------DP 417 (524)
Q Consensus 346 ~~L~~~ea~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-~~~~~~~~l~~l~~~~------~~ 417 (524)
++|+.++|++||.+.++... ...+...+.+++|++.|+|+||||+++|++++.+ +..+|+..++++.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 2233445788999999999999999999999543 5678988887765432 46
Q ss_pred cHHHHHhhccccCChhhHhHhhhhccccCC--CCHHHHHHHHHhcC
Q 009845 418 DIYDVLKISYNELKLEEKNIFLDIACFFAG--EDKDFVLRILEVSN 461 (524)
Q Consensus 418 ~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~ 461 (524)
.+..++..||+.|+++.|.||.+||+||.+ ++.+.+..+|..++
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence 699999999999999999999999999987 56999999998764
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.85 E-value=4.2e-22 Score=171.52 Aligned_cols=133 Identities=34% Similarity=0.579 Sum_probs=115.3
Q ss_pred EEEecccCcccccHHHHHHHHHhhC--CCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHH
Q 009845 14 VFLSFRGEDTRDNFTSRLHAALCRK--KINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCLNELVKIL 91 (524)
Q Consensus 14 vFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~ 91 (524)
|||||++.|.+..|+++|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|++|+||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999434666999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhCC--CeeeeeeeecCCcccc-cccCcchhhhhhhhhhccCC--hHHHHHHHHHhh
Q 009845 92 ECKSMNG--QMVVPVFYHVDPSDVR-KQNGTFGDAFVKHEKQFKDV--PEKVQKWRAALT 146 (524)
Q Consensus 92 ~~~~~~~--~~v~pv~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 146 (524)
++....+ ..|+|||+++.+.+++ .+.+.+...+.....-..+. .+....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9886644 8999999999999999 78888888887776665554 467889988764
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.84 E-value=1.4e-20 Score=162.40 Aligned_cols=137 Identities=41% Similarity=0.677 Sum_probs=114.1
Q ss_pred cccEEEeccc-CcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhHHHHHH
Q 009845 11 KYDVFLSFRG-EDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCLNELVK 89 (524)
Q Consensus 11 ~~dvFis~~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~ 89 (524)
.|||||||++ +|....|+.+|...|...|+.+|.|++.. |.....+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 45668899999999999999999997543 43333499999999999999999999999999999999
Q ss_pred HHHhHhh-CCCeeeeeeeecCCcccccccCcchhhhhhhhhhccCChHHHHHHHHHhhhccc
Q 009845 90 ILECKSM-NGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASN 150 (524)
Q Consensus 90 ~~~~~~~-~~~~v~pv~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~ 150 (524)
+..+... ...+||||+++..|+++..+.+.++..+.....+..+.... ..|+.++..++.
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 9987744 67899999999999889999999999988875555444322 689888776643
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.76 E-value=6.7e-17 Score=182.33 Aligned_cols=294 Identities=15% Similarity=0.190 Sum_probs=189.1
Q ss_pred cCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH
Q 009845 181 SFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 181 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
.+|..+..+|-|+.-++.|... ...+++.|+||+|.||||++.++.+.. +.+.|+. +.... .+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESD---NQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHHH
Confidence 3566678899999777666432 357899999999999999999988643 2467775 33222 334455
Q ss_pred HHHHHHhhcccccc-----------cCCCC---chHHHHHHHh--cCccEEEecCCCCH---H---HHHHHhcCCCCCCC
Q 009845 261 REQVLSEVLDENIK-----------IRTPD---LPKYMRERLQ--QMKIFIVLDDVNKV---R---QLEYLTGGLDQFGP 318 (524)
Q Consensus 261 ~~~l~~~l~~~~~~-----------~~~~~---~~~~l~~~l~--~~~~LlVlDdv~~~---~---~~~~l~~~~~~~~~ 318 (524)
...++..+...... ..... ....+...+. +.+++|||||+... . .+..++.. ..+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCC
Confidence 55555554321111 00011 1222222232 67999999999543 1 33334433 246
Q ss_pred CcEEEEEeCChhhHH--HhCCCCcceEEeC----CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 319 GSRLIITTRDKQVLD--DFGVLNTNIYEVN----GLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 319 ~~~iliTsR~~~~~~--~~~~~~~~~~~l~----~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
+.++|||||....+. ..... ....++. +|+.+|+.+||....+.. ...+.+.+|++.|+|+|+++..+
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHH
Confidence 778889999853221 11111 1334555 999999999998776322 12356788999999999999998
Q ss_pred HHHhcCCCHHHHHHHHHHhhcCCCccHHHHHhh-ccccCChhhHhHhhhhccccCCCCHHHHHHHHHhcCc--cHHHHhh
Q 009845 393 GSFLHQKSKLEWENALENLKMISDPDIYDVLKI-SYNELKLEEKNIFLDIACFFAGEDKDFVLRILEVSNC--VLNVLVH 469 (524)
Q Consensus 393 ~~~l~~~~~~~~~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~--~l~~L~~ 469 (524)
+..+...+. ........+...+...+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+.... .++.|.+
T Consensus 226 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~ 303 (903)
T PRK04841 226 ALSARQNNS-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELER 303 (903)
T ss_pred HHHHhhCCC-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 877754321 01111122222123456665444 48999999999999999986 7787777766654433 8999999
Q ss_pred CCCcee-cC--CCeEEccHHHHHHHHHHHhhh
Q 009845 470 KSLITL-SY--SNKLQMHDLLQEMGREIVRQE 498 (524)
Q Consensus 470 ~sLi~~-~~--~~~~~mH~lvr~~a~~~~~~~ 498 (524)
.+|+.. .+ ...|++|++++++.++.+..+
T Consensus 304 ~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 304 QGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 999653 22 236999999999999988554
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.67 E-value=3e-17 Score=133.08 Aligned_cols=87 Identities=32% Similarity=0.553 Sum_probs=75.6
Q ss_pred EEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHh
Q 009845 14 VFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCLNELVKILEC 93 (524)
Q Consensus 14 vFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~ 93 (524)
|||||+++| ..++++|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+.+|+++|++|..|+||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~-- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW-- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH--
Confidence 899999999 6689999999999999999997 99999999999999999999999999999999999999998873
Q ss_pred HhhCCCeeeeeeee
Q 009845 94 KSMNGQMVVPVFYH 107 (524)
Q Consensus 94 ~~~~~~~v~pv~~~ 107 (524)
..++.|+||.++
T Consensus 76 --~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 --KRGKPIIPVRLD 87 (102)
T ss_dssp --CTSESEEEEECS
T ss_pred --HCCCEEEEEEEC
Confidence 345689999855
No 9
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=165.32 Aligned_cols=321 Identities=16% Similarity=0.194 Sum_probs=196.5
Q ss_pred CccccchhhhhHHHhhccCCC-CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEe----eccccccCcChHHHHH
Q 009845 188 GFVGLNSRIEEIKSLLCIGLP-DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMAN----VREESEKGGGLVHLRE 262 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~~l~~ 262 (524)
.++||+.+++.|...+....+ ...++.|.|.+|||||+|++++...+.+... .|+.. .....+. ..+....+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl-~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPL-SPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCch-HHHHHHHH
Confidence 379999999999998875443 3789999999999999999999997766521 22111 1111111 12222333
Q ss_pred HHHHhh-------------------ccccccc-----------C---------CCC--------chHHHHHHH-hcCccE
Q 009845 263 QVLSEV-------------------LDENIKI-----------R---------TPD--------LPKYMRERL-QQMKIF 294 (524)
Q Consensus 263 ~l~~~l-------------------~~~~~~~-----------~---------~~~--------~~~~l~~~l-~~~~~L 294 (524)
.+..++ +...... . ... ....+.... +.+|.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 333322 1110000 0 000 111112222 346999
Q ss_pred EEecCC-CCHHH----HHHHhcCCC--CC-CCCcEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCC
Q 009845 295 IVLDDV-NKVRQ----LEYLTGGLD--QF-GPGSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDY 366 (524)
Q Consensus 295 lVlDdv-~~~~~----~~~l~~~~~--~~-~~~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~ 366 (524)
+|+||+ |.+.. ++.++.... .+ .+....+.|.+...-.........+.+.|.||+..+...++.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 999999 54433 333333321 00 01112222333321111122233478999999999999999998855332
Q ss_pred CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCC-------CHHHHHHHHHHhhcCC-CccHHHHHhhccccCChhhHhHh
Q 009845 367 CLDDLLVLLEHVVKYANGNPLALRVLGSFLHQK-------SKLEWENALENLKMIS-DPDIYDVLKISYNELKLEEKNIF 438 (524)
Q Consensus 367 ~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~~~~l 438 (524)
. ..+....|++++.|||+++..+...+.+. +...|.....++.... .+.+...+...+++||...+.++
T Consensus 238 ~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl 314 (849)
T COG3899 238 L---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVL 314 (849)
T ss_pred c---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 2 23678889999999999999999998764 3345555544443322 12355578899999999999999
Q ss_pred hhhccccCCCCHHHHHHHHHhcCc----cHHHHhhCCCceecC--------CC---eEEccHHHHHHHHHHHhhhCCCCC
Q 009845 439 LDIACFFAGEDKDFVLRILEVSNC----VLNVLVHKSLITLSY--------SN---KLQMHDLLQEMGREIVRQEFVKEP 503 (524)
Q Consensus 439 ~~la~f~~~~~~~~l~~~~~~~~~----~l~~L~~~sLi~~~~--------~~---~~~mH~lvr~~a~~~~~~~~~~~~ 503 (524)
...||+++.|+.+.+..++..... .+......++|.+.+ .. +-..|++||+.+...+.++
T Consensus 315 ~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~----- 389 (849)
T COG3899 315 KAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES----- 389 (849)
T ss_pred HHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh-----
Confidence 999999999999999998886444 444444445554321 11 2267999999988776554
Q ss_pred CCcccccChhhHHHHHhhC
Q 009845 504 GKRSRLWYHEDVYHVLKKN 522 (524)
Q Consensus 504 ~~~~rl~~~~~~~~~l~~~ 522 (524)
+|...|..|...|..+
T Consensus 390 ---~rq~~H~~i~~lL~~~ 405 (849)
T COG3899 390 ---QRQYLHLRIGQLLEQN 405 (849)
T ss_pred ---hHHHHHHHHHHHHHHh
Confidence 3445666666666554
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.63 E-value=1.5e-14 Score=149.69 Aligned_cols=295 Identities=16% Similarity=0.204 Sum_probs=195.2
Q ss_pred CCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
+|..+.+.|-|..-++.|.+. .+.|.+.|+.|+|.|||||+.+++. ....-..+.|+.-- +...+...+.
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld----e~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD----ESDNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC----CccCCHHHHH
Confidence 455678889998777766653 3589999999999999999999988 44445667787732 2225667777
Q ss_pred HHHHHhhcccccccCCC--------------CchHHHHHHHh--cCccEEEecCCCC------HHHHHHHhcCCCCCCCC
Q 009845 262 EQVLSEVLDENIKIRTP--------------DLPKYMRERLQ--QMKIFIVLDDVNK------VRQLEYLTGGLDQFGPG 319 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~--------------~~~~~l~~~l~--~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~~ 319 (524)
..++..++...+..... .+...+...+. .+|+++||||..- ...++.++... .++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCC
Confidence 77777766433322111 12233333333 4689999999932 23456666554 478
Q ss_pred cEEEEEeCChhhHHHhCC-CCcceEEeC----CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 009845 320 SRLIITTRDKQVLDDFGV-LNTNIYEVN----GLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGS 394 (524)
Q Consensus 320 ~~iliTsR~~~~~~~~~~-~~~~~~~l~----~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 394 (524)
..+|+|||...-+..... .....+++. .|+.+|+.++|...... +.....++.+.+.++|.+-|+.+++-
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHH
Confidence 899999999854321100 001233343 38999999999987621 22335688999999999999999988
Q ss_pred HhcCC-CHHHHHHHHHHhhcCCCccHHH-HHhhccccCChhhHhHhhhhccccCCCCHHHHHHHHHhcCc--cHHHHhhC
Q 009845 395 FLHQK-SKLEWENALENLKMISDPDIYD-VLKISYNELKLEEKNIFLDIACFFAGEDKDFVLRILEVSNC--VLNVLVHK 470 (524)
Q Consensus 395 ~l~~~-~~~~~~~~l~~l~~~~~~~i~~-~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~--~l~~L~~~ 470 (524)
.++++ +...-... +... ..-+.+ +.+.-+++||++.+.++..+|++. .+..+....+.+..+. .++.|.++
T Consensus 236 a~~~~~~~~q~~~~---LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Ltg~~ng~amLe~L~~~ 310 (894)
T COG2909 236 ALRNNTSAEQSLRG---LSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALTGEENGQAMLEELERR 310 (894)
T ss_pred HccCCCcHHHHhhh---ccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHhcCCcHHHHHHHHHhC
Confidence 88733 32221111 1100 111222 345567999999999999999884 3455555555554444 79999999
Q ss_pred CCcee---cCCCeEEccHHHHHHHHHHHhhhC
Q 009845 471 SLITL---SYSNKLQMHDLLQEMGREIVRQEF 499 (524)
Q Consensus 471 sLi~~---~~~~~~~mH~lvr~~a~~~~~~~~ 499 (524)
+|.-. ++++.|++|+++.+|.++....+.
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 99763 235679999999999999988764
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55 E-value=1.1e-12 Score=133.66 Aligned_cols=285 Identities=16% Similarity=0.078 Sum_probs=165.6
Q ss_pred cCCCCCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhccccc-ceEEEEeeccccccCcCh
Q 009845 181 SFSSDFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCFMANVREESEKGGGL 257 (524)
Q Consensus 181 ~~~~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~ 257 (524)
.+...+..|+||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+....+ ..+.+.++... .+.
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~----~~~ 99 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID----RTR 99 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC----CCH
Confidence 34446688999999999999988532 223456889999999999999999998765542 22222222222 345
Q ss_pred HHHHHHHHHhhcccc-cccCC--CCchHHHHHHHh--cCccEEEecCCCCHH------HHHHHhcCCCCCC-CCcEEEEE
Q 009845 258 VHLREQVLSEVLDEN-IKIRT--PDLPKYMRERLQ--QMKIFIVLDDVNKVR------QLEYLTGGLDQFG-PGSRLIIT 325 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~-~~~~~--~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~-~~~~iliT 325 (524)
..++..++.++.... +.... .+....+.+.+. +++.+||||+++... .+..+........ ....+|.+
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEE
Confidence 677777877765421 11111 134455555554 356899999997643 3444443322111 12335666
Q ss_pred eCChhhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHh----CCChHHHHHHHHHh
Q 009845 326 TRDKQVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYA----NGNPLALRVLGSFL 396 (524)
Q Consensus 326 sR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~~~~l 396 (524)
+.+..+.... .......+.++|++.++..+++..++...-.+.....+.++.+++.+ |..+.++.++-...
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6654332211 01112568999999999999999876321101111123334444444 55667776654322
Q ss_pred c-----CC---CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcccc----CCCCHHHHHH----HHH--
Q 009845 397 H-----QK---SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFF----AGEDKDFVLR----ILE-- 458 (524)
Q Consensus 397 ~-----~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~----~~~-- 458 (524)
. +. +...+..+.... -...+...+..||.+++.++..++... ..+....+.. ++.
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 11 344555555443 123345568899999999998877543 2344333332 221
Q ss_pred -hcCc-------cHHHHhhCCCceec
Q 009845 459 -VSNC-------VLNVLVHKSLITLS 476 (524)
Q Consensus 459 -~~~~-------~l~~L~~~sLi~~~ 476 (524)
.... +++.|...|||...
T Consensus 333 ~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 89999999999853
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=1.7e-11 Score=123.60 Aligned_cols=284 Identities=18% Similarity=0.115 Sum_probs=161.7
Q ss_pred CCCCCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhccccc-----ceEEEEeeccccccC
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-----GKCFMANVREESEKG 254 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~ 254 (524)
+...|..|+||+.++++|..++... ....+.+.|+|++|+|||++++.+++.+....+ ..+.+.++...
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~---- 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL---- 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC----
Confidence 3345578999999999999988631 223567999999999999999999987654322 12222222222
Q ss_pred cChHHHHHHHHHhhc---ccccccC--CCCchHHHHHHHh--cCccEEEecCCCCHH-----HHHHHhcCC--CCC-CCC
Q 009845 255 GGLVHLREQVLSEVL---DENIKIR--TPDLPKYMRERLQ--QMKIFIVLDDVNKVR-----QLEYLTGGL--DQF-GPG 319 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~---~~~~~~~--~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~~--~~~-~~~ 319 (524)
.+...++..++.++. ...+... ..+....+.+.+. +++++||||+++... .+..+.... ... ...
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 345577777777763 2211111 1123344444443 467899999997662 133333221 111 123
Q ss_pred cEEEEEeCChhhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhhc---CCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 009845 320 SRLIITTRDKQVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFAF---KHDYCLDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 320 ~~iliTsR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~~---~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
..+|.++......... .......+.++|++.++..+++..++. ......+...+.+..++..+.|.|..+..
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 3455555544332211 011125689999999999999998863 12222333334556677777899854433
Q ss_pred HHHHh-----c-C---CCHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcccc----CCCCHHHHHH---
Q 009845 392 LGSFL-----H-Q---KSKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFF----AGEDKDFVLR--- 455 (524)
Q Consensus 392 ~~~~l-----~-~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~--- 455 (524)
+.... . + -+......+...+. .......+..||.+++.++..++... ..+....+..
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 22211 1 1 13344444444331 23345667889999988887766332 1233333222
Q ss_pred -HHHhcCc----------cHHHHhhCCCceec
Q 009845 456 -ILEVSNC----------VLNVLVHKSLITLS 476 (524)
Q Consensus 456 -~~~~~~~----------~l~~L~~~sLi~~~ 476 (524)
+....+. ++..|...|||+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2222121 88999999999864
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.45 E-value=2.4e-12 Score=126.30 Aligned_cols=266 Identities=14% Similarity=0.133 Sum_probs=147.2
Q ss_pred CCccccchhhhhHHHhhccC---CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 187 NGFVGLNSRIEEIKSLLCIG---LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
..|+|+++.+++|..++... ....+.+.++|++|+|||+||+.+++.+...+. ....... .....+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHH-H
Confidence 46999999999999988632 223556889999999999999999998754321 1111000 1111111 1
Q ss_pred HHHhhcccc------cccCCCCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCC
Q 009845 264 VLSEVLDEN------IKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGV 337 (524)
Q Consensus 264 l~~~l~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~ 337 (524)
.+..+.... ...-.....+.+...+.+.+..+|+++..+...+.. ...+.+-|..||+...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEecCCccccCHHHHh
Confidence 111111000 000000111222222233333333333222211110 01223445566666433222111
Q ss_pred CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcC------C---CHHHHHHHH
Q 009845 338 LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQ------K---SKLEWENAL 408 (524)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~------~---~~~~~~~~l 408 (524)
.....+.+++++.++..+++.+.+..... ....+.+..|++.|+|.|..+..++..+.. . +......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~-- 224 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK-- 224 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH--
Confidence 11156899999999999999988754332 233467788999999999877655554321 0 1111111
Q ss_pred HHhhcCCCccHHHHHhhccccCChhhHhHhhhh-ccccC-CCCHHHHHHHHHhcCc----cHH-HHhhCCCceecCCCeE
Q 009845 409 ENLKMISDPDIYDVLKISYNELKLEEKNIFLDI-ACFFA-GEDKDFVLRILEVSNC----VLN-VLVHKSLITLSYSNKL 481 (524)
Q Consensus 409 ~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~l-a~f~~-~~~~~~l~~~~~~~~~----~l~-~L~~~sLi~~~~~~~~ 481 (524)
....+...+..|+..++..|..+ +.+.. +++.+.+...++.... .++ .|++.+||...+.|++
T Consensus 225 ----------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 225 ----------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred ----------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 12224556788888888877734 55543 3677888877776555 577 6999999986655543
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.44 E-value=2.2e-13 Score=128.20 Aligned_cols=198 Identities=21% Similarity=0.240 Sum_probs=102.4
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH------HH
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL------RE 262 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 262 (524)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.........+|+........ ...... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHH
Confidence 799999999999998743 35689999999999999999999987554334444442222111 111111 11
Q ss_pred HHHHhhcccccc-----------cCCCCchHHHHHHHh--cCccEEEecCCCCHH-----------HHHHHhcCCCCCCC
Q 009845 263 QVLSEVLDENIK-----------IRTPDLPKYMRERLQ--QMKIFIVLDDVNKVR-----------QLEYLTGGLDQFGP 318 (524)
Q Consensus 263 ~l~~~l~~~~~~-----------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~ 318 (524)
.+...+...... .........+.+.+. +++++||+||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 111111111110 011123333333343 345999999995544 12222222221 23
Q ss_pred CcEEEEEeCChhhHHHh------CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 319 GSRLIITTRDKQVLDDF------GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 319 ~~~iliTsR~~~~~~~~------~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
...+++++....+.... .......+.|++|+.+++.+++....... ...+...+..++++..+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 33445555444443330 01112459999999999999999875332 111224566799999999999998653
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.42 E-value=1.7e-12 Score=128.28 Aligned_cols=259 Identities=15% Similarity=0.114 Sum_probs=150.7
Q ss_pred CCCCCCccccchhhhhHHHhhcc---CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCI---GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|.....|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. ....... ... .
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~----~~~-~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPAL----EKP-G 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccc----cCh-H
Confidence 34567899999999999887753 2233568899999999999999999998754321 1111100 001 1
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--HHHHHhcCCC-------------------CCCC
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--QLEYLTGGLD-------------------QFGP 318 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~ 318 (524)
.+..++..+ +...+|+||+++... ..+.+...+. ...+
T Consensus 92 ~l~~~l~~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 92 DLAAILTNL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHHhc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 111111111 123456666664321 1111111000 0012
Q ss_pred CcEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcC
Q 009845 319 GSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQ 398 (524)
Q Consensus 319 ~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 398 (524)
.+-|..|++...+...........+++++++.++..+++.+.+...+. ....+.+..|++.|+|.|-.+..+...+..
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 344556666543322211111156899999999999999988755432 233467899999999999766655554321
Q ss_pred CCHHHHHHHHHHhhcCCC---ccHHHHHhhccccCChhhHhHhh-hhccccC-CCCHHHHHHHHHhcCc----cHH-HHh
Q 009845 399 KSKLEWENALENLKMISD---PDIYDVLKISYNELKLEEKNIFL-DIACFFA-GEDKDFVLRILEVSNC----VLN-VLV 468 (524)
Q Consensus 399 ~~~~~~~~~l~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~~~~~~~~----~l~-~L~ 468 (524)
|.... .-..... ......+...+..|++..+..+. .+..|.. ++..+.+...+..... .++ .|+
T Consensus 229 -----~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 229 -----FAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred -----HHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 11100 0000011 11223445667788888888886 5556654 4778888888776555 555 899
Q ss_pred hCCCceecCCC
Q 009845 469 HKSLITLSYSN 479 (524)
Q Consensus 469 ~~sLi~~~~~~ 479 (524)
+.+||+....|
T Consensus 303 ~~~li~~~~~g 313 (328)
T PRK00080 303 QQGFIQRTPRG 313 (328)
T ss_pred HcCCcccCCch
Confidence 99999866555
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.34 E-value=3.8e-11 Score=115.61 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=108.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH--
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER-- 287 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~-- 287 (524)
.+.++|+|++|+|||||++.+++.+...-...+++.. .. .+..+++..++..++..............+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999876532111122221 11 345567777777765543221111222233222
Q ss_pred ---HhcCccEEEecCCCCHH--HHHHHh---cCCCCCCCCcEEEEEeCChhhHHHhC--------CCCcceEEeCCCCHH
Q 009845 288 ---LQQMKIFIVLDDVNKVR--QLEYLT---GGLDQFGPGSRLIITTRDKQVLDDFG--------VLNTNIYEVNGLEYH 351 (524)
Q Consensus 288 ---l~~~~~LlVlDdv~~~~--~~~~l~---~~~~~~~~~~~iliTsR~~~~~~~~~--------~~~~~~~~l~~L~~~ 351 (524)
..+++.+||+||++... .++.+. ...........|++|.... ...... ......+.+++|+.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25678899999996543 333332 2211112223455665433 211111 111246889999999
Q ss_pred HHHHHHHhhhcCCC--CCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 352 EALELFCNFAFKHD--YCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 352 ea~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
|..+++...+.... ....-..+..+.|++.++|+|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999988764322 1122345788999999999999999988876
No 17
>PF05729 NACHT: NACHT domain
Probab=99.23 E-value=7.5e-11 Score=104.58 Aligned_cols=144 Identities=21% Similarity=0.332 Sum_probs=86.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccccc-----ceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHH
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFE-----GKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMR 285 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~ 285 (524)
|++.|+|.+|+||||++..++..+..... ...++...+..... .....+...+.......... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~-----~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS-NNSRSLADLLFDQLPESIAP-----IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc-cccchHHHHHHHhhccchhh-----hHHHHH
Confidence 58999999999999999999987665532 23334434443332 11123444443333222111 111222
Q ss_pred H-HHhcCccEEEecCCCCHHH---------HHHHh-cCCCC-CCCCcEEEEEeCChhh--HHHhCCCCcceEEeCCCCHH
Q 009845 286 E-RLQQMKIFIVLDDVNKVRQ---------LEYLT-GGLDQ-FGPGSRLIITTRDKQV--LDDFGVLNTNIYEVNGLEYH 351 (524)
Q Consensus 286 ~-~l~~~~~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~~~~iliTsR~~~~--~~~~~~~~~~~~~l~~L~~~ 351 (524)
. ....++++||||++++... +..++ ..+.. ..++++++||+|.... .... ......+++.+|+.+
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~-~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRR-LKQAQILELEPFSEE 153 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHh-cCCCcEEEECCCCHH
Confidence 2 2256899999999964432 11122 11111 2568999999999866 2221 121257999999999
Q ss_pred HHHHHHHhhh
Q 009845 352 EALELFCNFA 361 (524)
Q Consensus 352 ea~~ll~~~~ 361 (524)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 18
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.17 E-value=1.4e-10 Score=111.91 Aligned_cols=156 Identities=19% Similarity=0.328 Sum_probs=112.0
Q ss_pred CCCCcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCccc-------
Q 009845 7 SSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYAS------- 79 (524)
Q Consensus 7 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~------- 79 (524)
+.+...||||||+.. +....++.|.-.|+-+|++||+|-+.+..|. +.+++.+.|+.++.+|+|+|||.+.
T Consensus 608 ~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n 685 (832)
T KOG3678|consen 608 MLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN 685 (832)
T ss_pred cccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence 456789999999875 5778999999999999999999998998887 7799999999999999999999864
Q ss_pred -chhhHHHHHHHHHhHhhCCCeeeeeeeecCCcccccccCcchhhhhhhhhhccCChHHHHHHHHHhhhcccCCCCCCCC
Q 009845 80 -SKWCLNELVKILECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMN 158 (524)
Q Consensus 80 -s~~~~~El~~~~~~~~~~~~~v~pv~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 158 (524)
-.|.+.|+..++++. +.|||||-. +|+...++ +.+.. -...+....|.....
T Consensus 686 CeDWVHKEl~~Afe~~----KNIiPI~D~---------------aFE~Pt~e-----d~iPn---Dirmi~kyNGvKWvH 738 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQ----KNIIPIFDT---------------AFEFPTKE-----DQIPN---DIRMITKYNGVKWVH 738 (832)
T ss_pred HHHHHHHHHHHHHHhc----CCeeeeecc---------------cccCCCch-----hcCcH---HHHHHHhccCeeeeh
Confidence 369999999999887 789999633 12221111 01111 111233344443333
Q ss_pred CchhhHHHHHHHHHHHhhhhcccCCCCCCCcccc
Q 009845 159 IRPEAKLVDEIINDILKKLKARSFSSDFNGFVGL 192 (524)
Q Consensus 159 ~~~~~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR 192 (524)
.++...+.+++.-+..+++..+|......-+.|
T Consensus 739 -dYQdA~maKvvRFitGe~nRttptt~e~~Sis~ 771 (832)
T KOG3678|consen 739 -DYQDACMAKVVRFITGELNRTTPTTKEMPSISR 771 (832)
T ss_pred -hhHHHHHHHHHHHHhccccCCCCCcccCccccc
Confidence 557777888888888888775544444333333
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.13 E-value=7.3e-10 Score=106.36 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=105.7
Q ss_pred CCCCCccccchhhh---hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIE---EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
...+.+||-+.-+. -|..++. ++......+|||||+||||||+.++......|...--+. .+..++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdl 89 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDL 89 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHH
Confidence 33455666555442 3344454 335678889999999999999999997666543211111 333343
Q ss_pred HHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCC--CCHHHHHHHhcCCCCCCCCcEEEE--EeCChhhHH-Hh
Q 009845 261 REQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDV--NKVRQLEYLTGGLDQFGPGSRLII--TTRDKQVLD-DF 335 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv--~~~~~~~~l~~~~~~~~~~~~ili--TsR~~~~~~-~~ 335 (524)
..-+- +.-.....+++++|++|++ .+-.+-+.|++.+. .|.-|+| ||.|+...- ..
T Consensus 90 r~i~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 90 REIIE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHH----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHH
Confidence 32221 1112333578999999999 45567777877753 4554444 677763211 00
Q ss_pred CCCCcceEEeCCCCHHHHHHHHHhhhcCCC-----CCCchHHHHHHHHHHHhCCChHH
Q 009845 336 GVLNTNIYEVNGLEYHEALELFCNFAFKHD-----YCLDDLLVLLEHVVKYANGNPLA 388 (524)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLa 388 (524)
-...+.++.+++|+.++..+++.+.+.... ......++....++..++|---.
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 112238899999999999999998442211 11112345667788888887543
No 20
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.12 E-value=9.1e-11 Score=113.24 Aligned_cols=278 Identities=21% Similarity=0.227 Sum_probs=185.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
..|.+.++|+|||||||++.++.+ +...|...++++++...+++ ..+...+...++....+. ......+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQPG--DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccccc--hHHHHHHHHHH
Confidence 468999999999999999999999 88889999988877776543 333344444344332211 12334566677
Q ss_pred hcCccEEEecCCCCHHH-HHHHhcCCCCCCCCcEEEEEeCChhhHHHhCCCCcceEEeCCCCHH-HHHHHHHhhhcCCC-
Q 009845 289 QQMKIFIVLDDVNKVRQ-LEYLTGGLDQFGPGSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYH-EALELFCNFAFKHD- 365 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~-ea~~ll~~~~~~~~- 365 (524)
.+++.++|+||...... ...+...+....+...|+.|+|+... ..+...+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l-----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL-----VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc-----ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 88999999999965432 22333222222455678899997632 222267888888876 78888877653211
Q ss_pred --CCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHH----HhhcCC------CccHHHHHhhccccCChh
Q 009845 366 --YCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQKSKLEWENALE----NLKMIS------DPDIYDVLKISYNELKLE 433 (524)
Q Consensus 366 --~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~----~l~~~~------~~~i~~~l~~s~~~L~~~ 433 (524)
...........+|+++..|.|++|..+++..+.-........+. .++... .......+..||.-|+..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 11223345678999999999999999999988765444333332 222211 133567788999999999
Q ss_pred hHhHhhhhccccCCCCHHHHHHHHHhcCc---------cHHHHhhCCCceecC---CCeEEccHHHHHHHHHHHhhh
Q 009845 434 EKNIFLDIACFFAGEDKDFVLRILEVSNC---------VLNVLVHKSLITLSY---SNKLQMHDLLQEMGREIVRQE 498 (524)
Q Consensus 434 ~~~~l~~la~f~~~~~~~~l~~~~~~~~~---------~l~~L~~~sLi~~~~---~~~~~mH~lvr~~a~~~~~~~ 498 (524)
++..+..++.|...|..+........... .+..|++++++.... .-.|+.-.-+|.|+.+.+.+.
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887643333222211 678888899886542 223666677777776666554
No 21
>PTZ00202 tuzin; Provisional
Probab=99.05 E-value=2.2e-08 Score=98.08 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=121.7
Q ss_pred hhhcccCCCCCCCCCchhh--HHHHHHHHHHHhhhhc-----ccCCCCCCCccccchhhhhHHHhhccCCC-CceEEEEe
Q 009845 145 LTEASNLSGWDSMNIRPEA--KLVDEIINDILKKLKA-----RSFSSDFNGFVGLNSRIEEIKSLLCIGLP-DFRIVGIW 216 (524)
Q Consensus 145 l~~~~~~~g~~~~~~~~~~--~~i~~i~~~v~~~l~~-----~~~~~~~~~~vGR~~~l~~l~~~L~~~~~-~~~~v~I~ 216 (524)
+..++...||.+.+++.+. ..+.-.++.+.+.+++ ...|++...|+||+.++.+|...|...+. ..+++.|+
T Consensus 213 ~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLt 292 (550)
T PTZ00202 213 LLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFT 292 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Confidence 4445555667666655432 2233344444444333 13577889999999999999999974333 35799999
Q ss_pred ccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH-----h-c
Q 009845 217 GMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL-----Q-Q 290 (524)
Q Consensus 217 G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~-~ 290 (524)
|++|+|||||++.+..... ...++.+.. +..+++..++.+++.+.... ..++...+.+.+ . +
T Consensus 293 G~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr~LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~G 360 (550)
T PTZ00202 293 GFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLRSVVKALGVPNVEA-CGDLLDFISEACRRAKKMNG 360 (550)
T ss_pred CCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999987654 225554332 45799999999998632211 113444444332 2 4
Q ss_pred CccEEEec--CCCCHHHH-HHHhcCCCCCCCCcEEEEEeCChhhHH-HhCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 291 MKIFIVLD--DVNKVRQL-EYLTGGLDQFGPGSRLIITTRDKQVLD-DFGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 291 ~~~LlVlD--dv~~~~~~-~~l~~~~~~~~~~~~iliTsR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
++.+||+- +-.+..-+ .+. -.+.....-|+|++----+.+.. ....+.-..|.+++++.++|.++-....
T Consensus 361 rtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 361 ETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 55666654 22222211 111 11111134577776443332111 1112222679999999999999888765
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=1.9e-08 Score=105.94 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=133.1
Q ss_pred CCCCCCCccccchhhhhHHHhhcc---CCCCceEEEEeccCcchhhHHHHHHhhhhccc-----cc-ceEEEEeeccccc
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCI---GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-----FE-GKCFMANVREESE 252 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~~ 252 (524)
+...|..+.||+.|+++|...|.. ++....++.|+|++|+|||+.++.+.+.+... .+ ..+...++...
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L-- 827 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV-- 827 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc--
Confidence 345568899999999999988853 23334677899999999999999998876432 11 22223333222
Q ss_pred cCcChHHHHHHHHHhhcccccccCCC--CchHHHHHHHh---cCccEEEecCCCCHH-----HHHHHhcCCCCCCCCcEE
Q 009845 253 KGGGLVHLREQVLSEVLDENIKIRTP--DLPKYMRERLQ---QMKIFIVLDDVNKVR-----QLEYLTGGLDQFGPGSRL 322 (524)
Q Consensus 253 ~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~l~~~l~---~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~i 322 (524)
.....++..+..++....+..... .....+...+. +...+||||+++... .+-.|..... ..+++|
T Consensus 828 --stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKL 903 (1164)
T PTZ00112 828 --VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKL 903 (1164)
T ss_pred --CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeE
Confidence 345566666666664332221111 22333333331 224589999996442 1222222111 234554
Q ss_pred EE--EeCChhhH----HHhCC-CCcceEEeCCCCHHHHHHHHHhhhcCC-CCCCc-hHHHHHHHHHHHhCCChHHHHHHH
Q 009845 323 II--TTRDKQVL----DDFGV-LNTNIYEVNGLEYHEALELFCNFAFKH-DYCLD-DLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 323 li--TsR~~~~~----~~~~~-~~~~~~~l~~L~~~ea~~ll~~~~~~~-~~~~~-~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
++ +|....+. ..... .....+..+|++.++..+++..++... ....+ ..+-+|+.++...|..=.||.++-
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 43 34322111 11111 111347789999999999999988432 12222 222233333333455556666554
Q ss_pred HHhcCC-----CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcc
Q 009845 394 SFLHQK-----SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIAC 443 (524)
Q Consensus 394 ~~l~~~-----~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~ 443 (524)
...... .......+...+. ...+...+..||.+.+.+|..+..
T Consensus 984 rAgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHH
Confidence 444221 2233333333221 222444567889888888775553
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.00 E-value=5.2e-08 Score=99.34 Aligned_cols=181 Identities=20% Similarity=0.315 Sum_probs=108.3
Q ss_pred CCCCCccccchhhhh---HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIEE---IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
...+.|||.+..+.. |..++... ....+.|+|++|+||||||+.+++.....|. .+. ... .+...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~---a~~---~~~~~i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS---AVT---SGVKDL 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe---ccc---ccHHHH
Confidence 445679999988777 88887643 3457889999999999999999987654331 111 010 111111
Q ss_pred HHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCChhh--HHH
Q 009845 261 REQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLII--TTRDKQV--LDD 334 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili--TsR~~~~--~~~ 334 (524)
+.++.... .....+++.+|+||+++.. .+.+.++..+. .+..++| ||.+... ...
T Consensus 78 -r~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 -REVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred -HHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 11211110 0111357789999999654 34555555543 2444444 3444321 111
Q ss_pred hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCC-chHHHHHHHHHHHhCCChHHHHHHHHH
Q 009845 335 FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCL-DDLLVLLEHVVKYANGNPLALRVLGSF 395 (524)
Q Consensus 335 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~~~~ 395 (524)
. ......+.+.+++.++..+++.+.+....... ....+....+++.++|.|..+..+...
T Consensus 139 L-~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 L-LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred H-hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 11126799999999999999998663211111 233466788999999999877544433
No 24
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.5e-08 Score=95.82 Aligned_cols=281 Identities=17% Similarity=0.191 Sum_probs=166.4
Q ss_pred CCCCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhcccccce-EEEEeeccccccCcChHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGK-CFMANVREESEKGGGLVH 259 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~ 259 (524)
...|..+.+|+.+++++...|... ...+.-+.|+|++|+|||+.++.+++++....... +.+.++... .+...
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~----~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL----RTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC----CCHHH
Confidence 344556999999999999877521 11233499999999999999999999887765444 444444443 66788
Q ss_pred HHHHHHHhhccccc-ccCCCCchHHHHHHHh--cCccEEEecCCCCHH-----HHHHHhcCCCCCCCCcEE--EEEeCCh
Q 009845 260 LREQVLSEVLDENI-KIRTPDLPKYMRERLQ--QMKIFIVLDDVNKVR-----QLEYLTGGLDQFGPGSRL--IITTRDK 329 (524)
Q Consensus 260 l~~~l~~~l~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~i--liTsR~~ 329 (524)
++..++..++.... ..+..+..+.+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 88888888753222 2222355666666665 478899999996443 222333332211 3443 3444444
Q ss_pred hhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhh---cCCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHHH--hcC
Q 009845 330 QVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFA---FKHDYCLDDLLVLLEHVVKYANGN-PLALRVLGSF--LHQ 398 (524)
Q Consensus 330 ~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~---~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~~--l~~ 398 (524)
.....+ ...+...+..+|-+.+|-.+++..++ +..+...+...+++..++...+|- =.||..+-.. +.+
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 322211 11122458899999999999999876 344455555566666666666653 3455443322 221
Q ss_pred C------CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhccccCCCCHHHHHHHH----HhcCc------
Q 009845 399 K------SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFFAGEDKDFVLRIL----EVSNC------ 462 (524)
Q Consensus 399 ~------~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~----~~~~~------ 462 (524)
+ +.+....+.... -...+...+..|+.+.+..+..++....++....+.... ...+.
T Consensus 247 ~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~ 319 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFS 319 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHH
Confidence 1 122222221111 122344457889999888887776664444433333322 21111
Q ss_pred -cHHHHhhCCCceec
Q 009845 463 -VLNVLVHKSLITLS 476 (524)
Q Consensus 463 -~l~~L~~~sLi~~~ 476 (524)
.+..|...|+|...
T Consensus 320 ~ii~~L~~lgiv~~~ 334 (366)
T COG1474 320 DIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHhcCeEEee
Confidence 78888888988754
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=2.4e-08 Score=104.65 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=114.4
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+....... ... .+.-.....
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~--~~P--------CG~C~sCr~ 81 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT--SQP--------CGVCRACRE 81 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC--CCC--------CcccHHHHH
Confidence 445679999999999999997442 256778999999999999999988654211000 000 000011111
Q ss_pred HHHhhcccccccC--CCCchHHHHHHH--------hcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 264 VLSEVLDENIKIR--TPDLPKYMRERL--------QQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 264 l~~~l~~~~~~~~--~~~~~~~l~~~l--------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
+...-.......+ ....++.+++.+ .++.-++|||+++... ....|+..+.......++|++|.+...
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1100000000000 000111111111 2345589999997553 356666555444557788887777643
Q ss_pred HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHHH
Q 009845 332 LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP-LALRVLG 393 (524)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~ 393 (524)
+..--...+..+++.+++.++..+.+.+.+...+. ....+....|++.++|.. -+|.++-
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32111233478999999999999999988754332 223467788999998865 4555433
No 26
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1e-07 Score=94.59 Aligned_cols=202 Identities=13% Similarity=0.009 Sum_probs=113.6
Q ss_pred CCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc--ceEEEEeeccccccCcChHH
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE--GKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 259 (524)
.|.....++|.+...+.|.+.+..+. -...+.++|+.|+||+++|..+++.+-.+-+ ............. .+.-.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~--~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI--DPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC--CCCCh
Confidence 34556789999999999999887542 2567899999999999999999986532211 0000000000000 00001
Q ss_pred HHHHHHHhhccc--------cccc---CCCCchHHHHH---HH-----hcCccEEEecCCCC--HHHHHHHhcCCCCCCC
Q 009845 260 LREQVLSEVLDE--------NIKI---RTPDLPKYMRE---RL-----QQMKIFIVLDDVNK--VRQLEYLTGGLDQFGP 318 (524)
Q Consensus 260 l~~~l~~~l~~~--------~~~~---~~~~~~~~l~~---~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~ 318 (524)
..+.+...-... .... ...-.++.+++ .+ .+++.++|+|+++. ......++..+....+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 112221110000 0000 01111223332 22 24567999999953 3445556555544345
Q ss_pred CcEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 319 GSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 319 ~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
+..+|++|.+.......-...+..+.+.+++.++..+++...... .. .+....++..++|+|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 666777776653322112333488999999999999999986521 11 122367899999999866444
No 27
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=2.6e-08 Score=92.98 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=92.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.+.+.|+|++|+|||+|+..+++....+.....|+.. ... ...... +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~~~-------~~~~~~--------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-SKS-------QYFSPA--------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-HHh-------hhhhHH--------------------HHhhcc
Confidence 4678999999999999999999987665555555541 100 000001 111111
Q ss_pred cCccEEEecCCCCH---HHHH-HHhcCCCCC-CCCcEEEE-EeCCh---------hhHHHhCCCCcceEEeCCCCHHHHH
Q 009845 290 QMKIFIVLDDVNKV---RQLE-YLTGGLDQF-GPGSRLII-TTRDK---------QVLDDFGVLNTNIYEVNGLEYHEAL 354 (524)
Q Consensus 290 ~~~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~~~~ili-TsR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~ 354 (524)
+.-+|+|||++.. ..++ .+...+... ..+..+|+ |+... .+...+... ..+++++++.++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHH
Confidence 2358999999653 2222 222222111 23555554 44441 233333222 57899999999999
Q ss_pred HHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 355 ELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 355 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
+++.+.+..... ....+...-|++++.|..-.+..+-..|
T Consensus 168 ~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999988864442 2234677888999988887776554443
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.94 E-value=1.3e-08 Score=91.52 Aligned_cols=183 Identities=18% Similarity=0.182 Sum_probs=101.5
Q ss_pred CCCCCCccccchhhhhHHHhhcc---CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCI---GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|...+.|||-++.++.+.-++.. ..+....+.+|||||+||||||.-+++.....|. +.. .. .. ....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~-~i---~k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GP-AI---EKAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CC-C-----SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-ch-hh---hhHHH
Confidence 35668999999999988776642 2334678999999999999999999998876653 111 10 00 11122
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCC--------CCC----------
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQF--------GPG---------- 319 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~~---------- 319 (524)
+.. ++. + + +++.+|++|++... .+-+.|.+.+..+ +++
T Consensus 92 l~~-il~-------------------~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 LAA-ILT-------------------N-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HHH-HHH-------------------T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HHH-HHH-------------------h-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 211 111 1 1 24568888999543 3334444332110 111
Q ss_pred -cEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 009845 320 -SRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLH 397 (524)
Q Consensus 320 -~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~ 397 (524)
.-|=.|||...+..-+...-....++...+.+|-.+++.+.+..-+ .+...+.+.+|+.++.|.|--..-+....+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1233477765443322222123458999999999999998774433 344567899999999999986665555544
No 29
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=2.9e-08 Score=98.89 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc-cceEEEEeeccccccCcChHHHHH-
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF-EGKCFMANVREESEKGGGLVHLRE- 262 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~- 262 (524)
....++|++..++.|..++..+ ..+.+.++|++|+|||++|+.+++.+.... ...+...++...... ....+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ--GKKYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc--chhhhhcC
Confidence 3467899999999999988743 334688999999999999999998765332 222222222111100 0000000
Q ss_pred -HHHHhhcccccccCCCCchHHHHHHH---------hcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 263 -QVLSEVLDENIKIRTPDLPKYMRERL---------QQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 263 -~l~~~l~~~~~~~~~~~~~~~l~~~l---------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
.....++.. ... .......+++.+ ...+-+|||||++... ....+...+....+.+++|+|+.+..
T Consensus 89 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 89 PRFAHFLGTD-KRI-RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cchhhhhhhh-hhh-ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000 000 000111222211 1334589999996442 23333333322245567877775442
Q ss_pred -hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 331 -VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 331 -~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
+..... .....+++.+++.++..+++...+...+.. -..+.+..+++.++|++-.+...
T Consensus 167 ~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 167 KLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222211 223678999999999999998876443322 23467888999999987666443
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.91 E-value=3.5e-08 Score=97.55 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=107.1
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHH
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQV 264 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 264 (524)
....++|++..++.+..++..+ ..+.+.|+|++|+|||++++.+++.+........++. ... +.. .+.. .....
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~~-~~~~-~~~~~ 88 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SDE-RGID-VIRNK 88 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-ccc-cchH-HHHHH
Confidence 3466899999999999998743 2345799999999999999999987643311111221 110 000 1111 11111
Q ss_pred HHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHHHhCCCCcc
Q 009845 265 LSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ-VLDDFGVLNTN 341 (524)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~~~~~~~~ 341 (524)
+..+....+. ....+-++++|+++.. .....+...+....+.+.+|+++.... +..... ....
T Consensus 89 i~~~~~~~~~-------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr~~ 154 (319)
T PRK00440 89 IKEFARTAPV-------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SRCA 154 (319)
T ss_pred HHHHHhcCCC-------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HHhh
Confidence 1111110000 0123558999998643 233344443333345567777664432 111110 1125
Q ss_pred eEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 342 IYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 342 ~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
.+++++++.++...++...+...+.. -..+.+..+++.++|.+.-+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999999877543321 234678889999999987643
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=2.5e-08 Score=103.00 Aligned_cols=195 Identities=16% Similarity=0.097 Sum_probs=112.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc--ccceEEEEeeccccccCcChHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE--FEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
.....++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+... ++..|+.+..-.. +....
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~------i~~~~ 83 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA------VRRGA 83 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH------HhcCC
Confidence 344678999999999999887542 34667999999999999999999876421 2222222210000 00000
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHH
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLD 333 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~ 333 (524)
..-+..+... .....+.+..+.+.+ .+++-++|||+++.. ..+..++..+....+...+|+++... .+..
T Consensus 84 h~dv~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 84 HPDVLEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCceEEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 0000000000 000001111222221 245668999999644 44666666555434555555555443 2222
Q ss_pred HhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 334 DFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
.. ...+..+++.+++.++..+++.+.+...+.. ...+.+..|++.++|.+--+.
T Consensus 162 ~I-~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 162 TI-LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred HH-hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 21 1223789999999999999999887544322 234678889999999986553
No 32
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.90 E-value=5e-08 Score=91.26 Aligned_cols=176 Identities=19% Similarity=0.239 Sum_probs=103.6
Q ss_pred CCCccc--cchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 186 FNGFVG--LNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 186 ~~~~vG--R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.+.|++ .+..++.+..++.. ...+.+.|+|++|+|||+||+.+++.........+++. +..... -...
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~ 83 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ-------ADPE 83 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH-------hHHH
Confidence 345663 34467777777642 34578999999999999999999987654433334443 211110 0001
Q ss_pred HHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCChhh-------
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR---Q-LEYLTGGLDQ-FGPGSRLIITTRDKQV------- 331 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~~~~iliTsR~~~~------- 331 (524)
++ ..+. +.-+|||||++... . .+.+...+.. ...+..+|+||+....
T Consensus 84 ~~--------------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 84 VL--------------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred HH--------------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 11 1112 23489999996442 1 2233322211 1233578888875421
Q ss_pred --HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 332 --LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 332 --~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
...... ...+++++++.++...++...+..... ....+....|++.+.|+|..+..+...+
T Consensus 143 ~L~~r~~~--~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 143 DLRTRLAW--GLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHhc--CeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112211 257999999999999999876532221 2234667888889999999887665443
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=6.6e-08 Score=96.77 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=110.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+....... ... .+.-....+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~------~~p----c~~c~~c~~ 81 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT------SNP----CRKCIICKE 81 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC------CCC----CCCCHHHHH
Confidence 445779999999999999887432 356789999999999999999998764211000 000 000000111
Q ss_pred HHHhhccccc--ccC--CC-CchHHHHHHH-----hcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-
Q 009845 264 VLSEVLDENI--KIR--TP-DLPKYMRERL-----QQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIITTRDKQ- 330 (524)
Q Consensus 264 l~~~l~~~~~--~~~--~~-~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsR~~~- 330 (524)
+......... +.. .. +....+.+.+ .+++-++|+|+++... ....++..+....+...+|++|.+..
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1110000000 000 00 1111111111 2345699999997654 35566665554455666777665543
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
+.... ......+++.+++.++..+++...+...+. ....+.+..|++.++|.|.-+.
T Consensus 162 l~~tI-~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 162 IPKTI-LSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhHHH-HhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 22221 112378999999999999999887644332 1233567889999999886443
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=98.86 E-value=4.9e-08 Score=101.55 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=111.9
Q ss_pred CCCCCccccchhhhhHHHhhccCC--CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGL--PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
.....++|.+..++.|..|+.... ...+.+.|+|++|+||||+|+.+++.+.. + +...+... .......
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~--~--~ielnasd-----~r~~~~i 81 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW--E--VIELNASD-----QRTADVI 81 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C--EEEEcccc-----cccHHHH
Confidence 445679999999999999986321 22678999999999999999999998642 1 11111111 1111222
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCChhhHHH-
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR------QLEYLTGGLDQFGPGSRLIITTRDKQVLDD- 334 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~iliTsR~~~~~~~- 334 (524)
..++....... .....++-+||||+++... ....+...+. ..++.+|+|+.+..-...
T Consensus 82 ~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 82 ERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 33322211100 0001357799999996542 2444443333 234556666654321111
Q ss_pred hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 335 FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 335 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
.-...+..+.+++++.++....+...+...+.. ...+....|++.++|..-.+......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 001223779999999999999998877544322 224678889999999876665433333
No 35
>PF14516 AAA_35: AAA-like domain
Probab=98.85 E-value=9.9e-07 Score=87.02 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=121.2
Q ss_pred cCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccc-cCcChHH
Q 009845 181 SFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESE-KGGGLVH 259 (524)
Q Consensus 181 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 259 (524)
+.+.+...+|.|...-+++.+.+.. ....+.|.|+..+|||+|...+.+.....- ..+...++..... .......
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~-~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQG-YRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCC-CEEEEEEeecCCCcccCCHHH
Confidence 4566777889999666666666642 245899999999999999999998876542 2233333444322 1134454
Q ss_pred HHHHHHHh----hccccc-------ccCCC-CchHHHHHHH-h--cCccEEEecCCCCHHH----HHHHhcCCC------
Q 009845 260 LREQVLSE----VLDENI-------KIRTP-DLPKYMRERL-Q--QMKIFIVLDDVNKVRQ----LEYLTGGLD------ 314 (524)
Q Consensus 260 l~~~l~~~----l~~~~~-------~~~~~-~~~~~l~~~l-~--~~~~LlVlDdv~~~~~----~~~l~~~~~------ 314 (524)
.+..++.. ++.... ..... .....+.+.+ . +++++|+||+++..-. ...++..+.
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 55444443 332210 01111 3444454432 2 5899999999964321 122222111
Q ss_pred -CCC--CCcEEEE-EeCChhhHHHh---CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 009845 315 -QFG--PGSRLII-TTRDKQVLDDF---GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL 387 (524)
Q Consensus 315 -~~~--~~~~ili-TsR~~~~~~~~---~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 387 (524)
... ..-++++ .+......... ...-...++|++++.+|...|+.+.... ......++|...+||+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHH
Confidence 000 1112222 22111111110 0111257899999999999999876522 112338899999999999
Q ss_pred HHHHHHHHhcCC
Q 009845 388 ALRVLGSFLHQK 399 (524)
Q Consensus 388 al~~~~~~l~~~ 399 (524)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999764
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.4e-07 Score=98.08 Aligned_cols=193 Identities=18% Similarity=0.118 Sum_probs=112.7
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....+||.+...+.|.+++..+. -...+.++|++|+||||+|+.+++.+........ .. .+.-...+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~--------~p--Cg~C~sC~~ 80 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS--------TP--CEVCATCKA 80 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC--------CC--CccCHHHHH
Confidence 445789999999999999997442 2568899999999999999999887543210000 00 000001111
Q ss_pred HHHhhccccc--ccCCCCchHHHHHH--------HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 264 VLSEVLDENI--KIRTPDLPKYMRER--------LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 264 l~~~l~~~~~--~~~~~~~~~~l~~~--------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
+...-..... +.........+++. ..++.-++|||+++.. .....++..+....++.++|++|.+..-
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 1100000000 00000111112111 1245668999999654 3455566555444456677777766532
Q ss_pred HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 332 LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
...--...+..+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+..+
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 21111123378999999999999999887754332 233466788999999987544
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=98.82 E-value=1.3e-07 Score=93.22 Aligned_cols=185 Identities=14% Similarity=0.206 Sum_probs=107.1
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc-cccceEEEEeeccccccCcChHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW-EFEGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.....++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+. +.. .+.. ..+
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~-~vr 82 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGID-VVR 82 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHH-HHH
Confidence 44567899999999998887643 3345789999999999999999987632 23221111111 110 1222 222
Q ss_pred HHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCC
Q 009845 263 QVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLN 339 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~ 339 (524)
..+..+....... ..++.-+++||+++... ....+...+......+++++++... .+..... ..
T Consensus 83 ~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~-SR 149 (319)
T PLN03025 83 NKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ-SR 149 (319)
T ss_pred HHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH-Hh
Confidence 2222211110000 01345689999996542 2333433333234556777666543 2211111 11
Q ss_pred cceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 340 TNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 340 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
...+++++++.++..+.+...+...+.. ...+....+++.++|..-.+.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2679999999999999998877543322 224567889999998875443
No 38
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=8.5e-08 Score=102.60 Aligned_cols=188 Identities=16% Similarity=0.144 Sum_probs=112.9
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc---ceEEEEe------------ec
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE---GKCFMAN------------VR 248 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~------------~~ 248 (524)
.....+||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+..... ..|..+. +-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 445789999999999999987432 2556789999999999999999987643210 0011100 00
Q ss_pred ccccc-CcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEE
Q 009845 249 EESEK-GGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIIT 325 (524)
Q Consensus 249 ~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliT 325 (524)
..... ..++.. .+++...+. ..-..++.-++|||+++.. .....|+..+.......++|++
T Consensus 92 EidAas~~kVDd-IReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred EeccccccCHHH-HHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 00000 011111 112211110 0112356679999999644 4566666665544456666665
Q ss_pred eCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 009845 326 TRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 326 sR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
|.+. .+.... ...+..+++.+|+.++..+++.+.+...+ .....+.+..|++.++|.|--+..
T Consensus 156 TTe~~kLl~TI-lSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 156 TTDPQKLPVTV-LSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred CCCchhchHHH-HHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 5554 333221 11237899999999999999988774332 122346778899999999864433
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.8e-07 Score=94.46 Aligned_cols=191 Identities=13% Similarity=0.090 Sum_probs=110.3
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+....+...-. +... .. ...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--Cg~C----~s----C~~ 83 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--CNEC----TS----CLE 83 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--cCCC----cH----HHH
Confidence 445679999999999999987443 245689999999999999999998754321100000 0000 00 011
Q ss_pred HHHhhcccccccC----C-CCchHHHHHH-----HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENIKIR----T-PDLPKYMRER-----LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~~~~----~-~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...........+ . .+.+..+.+. ..++.-++|||+++.. +....|+..+........+|++|.+. .
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 1111000000000 0 0111111111 2345669999999644 45677776665433445555455443 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLA 388 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 388 (524)
+.... ...+..+.+.+++.++..+.+.+.+...+. ....+....|++.++|.+.-
T Consensus 164 I~~TI-~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 164 IPETI-LSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ccHHH-HhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 32221 222377999999999999999887744332 22346788899999999843
No 40
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=4.4e-08 Score=82.62 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=76.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.+++.|.|+.|+|||||+++++.... .....+++. .... ........ +..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~--------~~~~~~~~------------~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP--------RDRRLADP------------DLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH--------HHHHHhhh------------hhHHHHHHhhc
Confidence 36899999999999999999998765 222333443 2111 11000000 02233333334
Q ss_pred cCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHh----CCCCcceEEeCCCCHHH
Q 009845 290 QMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDF----GVLNTNIYEVNGLEYHE 352 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~----~~~~~~~~~l~~L~~~e 352 (524)
.++.+|+||++.....|...+..+....+..+|++|+.+....... .......+++.||+..|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 4788999999987777776665555445678999999987665321 11123568999999876
No 41
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.4e-07 Score=97.75 Aligned_cols=197 Identities=12% Similarity=0.096 Sum_probs=112.4
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccce-EEEEeeccccccCcChHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGK-CFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.....+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+...-+.. --+. ... .+.-....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~P-CG~C~sC~ 85 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQP-CGQCRACT 85 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCC-CcccHHHH
Confidence 445679999999999999997442 256778999999999999999998754311000 0000 000 00001111
Q ss_pred HHHHhhcccccccC--CCCchHHHHHH--------HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-
Q 009845 263 QVLSEVLDENIKIR--TPDLPKYMRER--------LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK- 329 (524)
Q Consensus 263 ~l~~~l~~~~~~~~--~~~~~~~l~~~--------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~- 329 (524)
.+...-.......+ ....++.+++. ..++.-++|||+++.. .....|+..+......+.+|++|.+.
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11110000000000 00011111111 1345569999999654 45667777665445566666555544
Q ss_pred hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 330 QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
.+.... ...+..+.+.+++.++..+.+.+.+...+.. ...+....|++.++|.|.-..
T Consensus 166 kLlpTI-rSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 166 KIPVTV-LSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhhHH-HHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 333221 1223789999999999999999877443322 223556788999999986443
No 42
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.6e-07 Score=92.77 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=114.7
Q ss_pred CCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc----cceEEEEeeccccccCcCh
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF----EGKCFMANVREESEKGGGL 257 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~ 257 (524)
.|.....++|-+...+.|...+..+. ....+.|+|+.|+||||||..+++.+-..- ....... . .+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~----~----~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD----P----DPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC----C----CCC
Confidence 45567889999999999999997543 356799999999999999999998764421 1000000 0 111
Q ss_pred HHHHHHHHHhhc-------cc-ccc---cCCC---CchHHHHHHHh-----cCccEEEecCCCCH--HHHHHHhcCCCCC
Q 009845 258 VHLREQVLSEVL-------DE-NIK---IRTP---DLPKYMRERLQ-----QMKIFIVLDDVNKV--RQLEYLTGGLDQF 316 (524)
Q Consensus 258 ~~l~~~l~~~l~-------~~-~~~---~~~~---~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~ 316 (524)
....+.+...-. .. +.. .... +.+..+.+.+. ++.-++|+|+++.. .....++..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 112233322100 00 000 0011 12222333332 45669999999644 3445555544433
Q ss_pred CCCcEEEEEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 317 GPGSRLIITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 317 ~~~~~iliTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
.....+|++|.+. .+.... ...+..+++.+++.++..+++........ ...+.+..+++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptI-rSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTI-RSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHH-HhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3445555444433 333322 22347899999999999999998542211 22355778999999999865443
No 43
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=1.2e-07 Score=99.50 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=110.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....+||.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+........ .. .+.-.....
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~-~p---------Cg~C~sCr~ 81 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG-EP---------CGVCQSCTQ 81 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCC-CC---------CcccHHHHH
Confidence 445789999999999999987432 2567899999999999999999886532211000 00 000000000
Q ss_pred HHHhhccc--ccccCCCCchHHHHHH--------HhcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-
Q 009845 264 VLSEVLDE--NIKIRTPDLPKYMRER--------LQQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIITTRDKQ- 330 (524)
Q Consensus 264 l~~~l~~~--~~~~~~~~~~~~l~~~--------l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsR~~~- 330 (524)
+...-... ..+.........+++. ..+++-++|||+++... ....|+..+......+++|++|.+..
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 00000000 0000000011111111 12456699999996543 34445544433345566776665442
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
+.... ...+..+++.+++.++..+.+.+.+...+.. ...+.+..|++.++|.+.-+..
T Consensus 162 L~~TI-rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 162 VPVTV-LSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred cchHH-HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHH
Confidence 22111 1122678899999999999999887544322 2346778899999999855543
No 44
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.74 E-value=2.2e-07 Score=86.96 Aligned_cols=175 Identities=17% Similarity=0.206 Sum_probs=98.5
Q ss_pred CCCcc-ccchhh-hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 186 FNGFV-GLNSRI-EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 186 ~~~~v-GR~~~l-~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.++|+ |...+. ..+.++.. +....+.+.|+|++|+|||+||..+++.....-....++. ... ....
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~----------~~~~ 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS----------PLLA 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH----------hHHH
Confidence 45555 544433 44444443 2234568999999999999999999987644323334443 111 0000
Q ss_pred HHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCC-CCCc-EEEEEeCChhhHHHh----
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQF-GPGS-RLIITTRDKQVLDDF---- 335 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~~~-~iliTsR~~~~~~~~---- 335 (524)
+ .. ....-+||+||++.. .....+...+... ..+. .+|+|++........
T Consensus 85 ~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 F---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred H---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 00 123457999999543 2222332222111 1233 366666643211100
Q ss_pred --CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 336 --GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 336 --~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
.......+++++++.++-..++.+....... .-.++....+++.+.|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 0111268999999999888887765432222 2234677888889999999987776655
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=4.9e-07 Score=92.78 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=108.6
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc---ceEEEE---------------
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE---GKCFMA--------------- 245 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~--------------- 245 (524)
.....++|.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+...-. ..|..+
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 445779999999888888876432 2456899999999999999999886532100 000000
Q ss_pred eeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEE
Q 009845 246 NVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLI 323 (524)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~il 323 (524)
.+... .. .++..+ +++...... .-..+++-++|+|+++.. .....++..+........+|
T Consensus 90 el~aa-~~-~gid~i-R~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 90 ELDAA-SN-RGIDEI-RKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEeCc-cc-CCHHHH-HHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 00000 00 111111 111111000 001245669999999654 34555665554333444444
Q ss_pred EEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHHH
Q 009845 324 ITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN-PLALRVLGSF 395 (524)
Q Consensus 324 iTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~~ 395 (524)
++|.+. .+.... ......+++.+++.++....+.+.+...+. ....+.+..|++.++|. +.++..+-..
T Consensus 152 lattn~~kl~~~L-~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 152 LATTNLEKVPPTI-ISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEeCChHhhhHHH-hcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 454443 232222 222378999999999999999887744332 22346678888888655 5666666543
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.71 E-value=5.4e-07 Score=90.47 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc----c-----------------cceE
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE----F-----------------EGKC 242 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f-----------------~~~~ 242 (524)
.....++|.+..++.|..++..+. -.+.+.++|++|+|||++|+.++..+... + ....
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 445678999999999999887432 24678899999999999999998875422 0 0011
Q ss_pred EEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCc
Q 009845 243 FMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGS 320 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 320 (524)
.+... .. ... ...+.+...+... -..+++-++|+|+++.. .....++..+....+..
T Consensus 90 ~~~~~----~~-~~~-~~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EIDAA----SN-NGV-DDIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eeecc----cc-CCH-HHHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 11100 00 011 1111222111100 01234558999998654 44555655554434556
Q ss_pred EEEEEeCChh-hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 009845 321 RLIITTRDKQ-VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGS 394 (524)
Q Consensus 321 ~iliTsR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 394 (524)
.+|++|.+.. +..... .....+++++++.++..+++...+-..+.. ...+.+..+++.++|.|..+.....
T Consensus 149 ~lIl~~~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 149 VFILATTEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eEEEEeCCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 6666765543 222221 112678999999999999999877443322 2246778899999999976655443
No 47
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=4.2e-07 Score=91.04 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=104.7
Q ss_pred CCccccchhhhhHHHhhccCCC--------CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChH
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLP--------DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLV 258 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 258 (524)
..++|-+..++.|.+++..+.. -.+.+.++|++|+|||++|..++..+-..... . ..++ .-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~~Cg--------~C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-PGCG--------EC 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-CCCC--------CC
Confidence 4688999999999998875431 25679999999999999999998864332110 0 0000 00
Q ss_pred HHHHHHHHhhccc----ccccCCC--CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEE
Q 009845 259 HLREQVLSEVLDE----NIKIRTP--DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIIT 325 (524)
Q Consensus 259 ~l~~~l~~~l~~~----~~~~~~~--~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliT 325 (524)
.....+....... .+..... +.+..+.+.+ .+++-++|+|+++.. .....++..+....++..+|++
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 0001111000000 0000000 0111222222 234458889999654 3345565555444456666666
Q ss_pred eCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 326 TRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 326 sR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
|.+. .+.... ...+..+.+++++.++..+++.+..+ . ..+.+..++..++|.|....
T Consensus 154 a~~~~~llpTI-rSRc~~i~f~~~~~~~i~~~L~~~~~---~----~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 154 APSPEDVLPTI-RSRCRHVALRTPSVEAVAEVLVRRDG---V----DPETARRAARASQGHIGRAR 211 (394)
T ss_pred ECChHHChHHH-HhhCeEEECCCCCHHHHHHHHHHhcC---C----CHHHHHHHHHHcCCCHHHHH
Confidence 6654 333222 22237899999999999999875431 1 13557788999999997543
No 48
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.70 E-value=2.3e-07 Score=93.14 Aligned_cols=175 Identities=24% Similarity=0.301 Sum_probs=100.6
Q ss_pred CCCCccccchhhhhHHHhhccC-----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIG-----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK 253 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 253 (524)
....+.|++.++++|...+... -...+.+.|+|++|+|||+||+.+++.....| +...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~------ 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV------ 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecc------
Confidence 3456889999999998866321 12256699999999999999999999775443 1100
Q ss_pred CcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 009845 254 GGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF- 316 (524)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 316 (524)
...+....... .. ......+...-...+.+|+||+++... .+..++..+...
T Consensus 189 ---~~~l~~~~~g~---~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 ---GSELVRKYIGE---GA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---hHHHHHHhhhH---HH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 01111111110 00 001111222223467899999996431 122333222211
Q ss_pred -CCCcEEEEEeCChhhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 -GPGSRLIITTRDKQVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+... ... ..+.++..+.++..++|..+..+...... .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd--~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFD--RIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCc--eEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 2356778888754322111 122 57899999999999999988754332221 12456777787764
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=5.4e-07 Score=92.09 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=110.3
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....+||-+..++.|.+.+..+. -.+.+.++|++|+||||+|+.+++.+-..+.... .. .+.-.....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~---------~p-Cg~C~~C~~ 78 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTS---------DP-CGTCHNCIS 78 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC---------CC-ccccHHHHH
Confidence 445789999999999998887442 2568999999999999999999875422111000 00 000011111
Q ss_pred HHHhhcccccccC--CCCchHHHHH---HH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENIKIR--TPDLPKYMRE---RL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~~~~--~~~~~~~l~~---~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...........+ .....+.+++ .. .++.-++|+|+++.. .....|+..+....+...+|++|.+. .
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 1111000000000 0001111111 11 234568999999544 34566665555445666666665443 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
+.... ...+..+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+.-+
T Consensus 159 l~~tI-~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 159 IPVTI-ISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHH-HHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 32221 122378999999999999999988754432 223466788999999988644
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=6.1e-07 Score=92.43 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=110.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc-------ceEEEEeeccccccCcC
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-------GKCFMANVREESEKGGG 256 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~ 256 (524)
.....++|-+..++.|.+.+..+. -.+.+.++|++|+||||+|+.+++.+-.... ..|..+
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----------- 85 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----------- 85 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC-----------
Confidence 445678999999999998776432 2568899999999999999999987533210 001110
Q ss_pred hHHHHHHHHHhhccccccc--CCCCchHHHHHH--------HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE
Q 009845 257 LVHLREQVLSEVLDENIKI--RTPDLPKYMRER--------LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLII 324 (524)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~--~~~~~~~~l~~~--------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili 324 (524)
.....+........... ........+++. ..+++-++|+|+++.. ..+..|+..+....+...+|+
T Consensus 86 --~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 86 --TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred --hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 00011100000000000 000011111111 1345678999999754 446666655554345555554
Q ss_pred -EeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 325 -TTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 325 -TsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
|++...+..... ..+..+++.+++.++..+++...+...+.. ...+.+..|++.++|.+.-+
T Consensus 164 aTte~~kI~~tI~-SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 164 ATTEVQKIPATII-SRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EeCChHHhhHHHH-hcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 444444433221 223679999999999999999888544322 23456778999999987544
No 51
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.68 E-value=6.8e-07 Score=82.65 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=92.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccc-eEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEG-KCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...+.|+|+.|+|||.|.+++++.+...++. .+.+. +..+....+...+... ....++..+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~----------~~~~f~~~~~~~~~~~--------~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL----------SAEEFIREFADALRDG--------EIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE----------EHHHHHHHHHHHHHTT--------SHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee----------cHHHHHHHHHHHHHcc--------cchhhhhhh
Confidence 4568999999999999999999987765443 23332 1233444444333221 223344444
Q ss_pred hcCccEEEecCCCCHH---HH-HHHhcCCCC-CCCCcEEEEEeCChhh---------HHHhCCCCcceEEeCCCCHHHHH
Q 009845 289 QQMKIFIVLDDVNKVR---QL-EYLTGGLDQ-FGPGSRLIITTRDKQV---------LDDFGVLNTNIYEVNGLEYHEAL 354 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~~~~iliTsR~~~~---------~~~~~~~~~~~~~l~~L~~~ea~ 354 (524)
+ .-=+|+|||++... .+ +.+...+.. ...|.+||+|+..... .+.+.. .-.+++.+++.++-.
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--GLVVELQPPDDEDRR 172 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--SEEEEE----HHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--cchhhcCCCCHHHHH
Confidence 4 34588999995432 12 222222211 1346789999965521 112212 267999999999999
Q ss_pred HHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 009845 355 ELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSF 395 (524)
Q Consensus 355 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 395 (524)
+++.+.+...... ..++.+.-|++.+.+..-.|..+-..
T Consensus 173 ~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 173 RILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999988544422 34467777888887777666555443
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=7.5e-08 Score=81.61 Aligned_cols=113 Identities=18% Similarity=0.284 Sum_probs=72.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc-----ccceEEEEeeccccccCcChHHHHHHHHHhhccccccc-CCCCchH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE-----FEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI-RTPDLPK 282 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~ 282 (524)
+.+.+.|+|++|+|||+++..+++..... ....+|+. +... .....+...++..++...... ...++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSS----RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHH----SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCC----CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35689999999999999999999976543 22334443 3222 367788899998887765551 2225667
Q ss_pred HHHHHHhcCcc-EEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCC
Q 009845 283 YMRERLQQMKI-FIVLDDVNKV---RQLEYLTGGLDQFGPGSRLIITTRD 328 (524)
Q Consensus 283 ~l~~~l~~~~~-LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTsR~ 328 (524)
.+.+.+.+.+. +||||+++.. ..++.+..... ..+.++|++.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77777776655 9999999665 33444433322 567788887765
No 53
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=6e-07 Score=93.08 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=109.4
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc---------------------ceE
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE---------------------GKC 242 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~ 242 (524)
.....++|-+..++.|...+..+. ....+.++|++|+||||+|+.+++.+..... ..+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 445679999999999999887432 3456889999999999999999986542110 001
Q ss_pred EEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHH-HHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCC
Q 009845 243 FMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRE-RLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPG 319 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~ 319 (524)
.+. . ... .++.+ .+.++. .+.. -..+++-++|+|+++.. .....|+..+......
T Consensus 92 eid-a---as~-~gvd~-ir~ii~----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 92 EID-A---ASR-TGVEE-TKEILD----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred Eee-c---ccc-cCHHH-HHHHHH----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 110 0 000 11111 111111 1110 12345679999999643 4456666655544455
Q ss_pred cEEEEEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 009845 320 SRLIITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL-ALRVL 392 (524)
Q Consensus 320 ~~iliTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 392 (524)
..+|++|.+. .+.... ...+..+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+. ++..+
T Consensus 150 v~fIL~Ttd~~kil~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTI-LSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6566544443 333221 222378999999999999888886643332 2334567789999999775 44333
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.66 E-value=2.7e-07 Score=87.42 Aligned_cols=177 Identities=17% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCCCCccccchhhhh---HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIEE---IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
.....+||-+..+.+ |.+++. .+..+.+.+||++|+||||||+.++..-+.+- ..|+. +........+...+
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDI 209 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHH
Confidence 444567777666543 333443 33577899999999999999999998765542 33443 33332221233333
Q ss_pred HHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCC--CCHHHHHHHhcCCCCCCCCcEEEE--EeCChhhHHH-h
Q 009845 261 REQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDV--NKVRQLEYLTGGLDQFGPGSRLII--TTRDKQVLDD-F 335 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv--~~~~~~~~l~~~~~~~~~~~~ili--TsR~~~~~~~-~ 335 (524)
+++-- -...+.++|.+|++|++ .+..+-+.|++... .|.-++| ||.|+...-. .
T Consensus 210 fe~aq------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 210 FEQAQ------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHH------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHH
Confidence 32211 11234678999999999 45556667776643 4554454 7777643211 1
Q ss_pred CCCCcceEEeCCCCHHHHHHHHHhhhc---CCC---CCC-----chHHHHHHHHHHHhCCCh
Q 009845 336 GVLNTNIYEVNGLEYHEALELFCNFAF---KHD---YCL-----DDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~ll~~~~~---~~~---~~~-----~~~~~~~~~i~~~~~G~P 386 (524)
-...+.++-|++|+.++...++.+..- ... .+. .....+.+-++..|.|-.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 122337899999999999999988331 111 111 123345566777777765
No 55
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.66 E-value=5.6e-07 Score=92.17 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=99.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccccc-ceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...+.|+|++|+|||+|++.+++.+....+ ..+.+. +..++...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv----------~~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM----------SGDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE----------EHHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 456899999999999999999997654332 222222 12344445444433210 1122233333
Q ss_pred hcCccEEEecCCCCH----HHHHHHhcCCCCC-CCCcEEEEEeCChh-hH--------HHhCCCCcceEEeCCCCHHHHH
Q 009845 289 QQMKIFIVLDDVNKV----RQLEYLTGGLDQF-GPGSRLIITTRDKQ-VL--------DDFGVLNTNIYEVNGLEYHEAL 354 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~----~~~~~l~~~~~~~-~~~~~iliTsR~~~-~~--------~~~~~~~~~~~~l~~L~~~ea~ 354 (524)
+ ..-+|||||+... ...+.+...+... ..+..||+||.... .. ..+.. .-++.+.+++.++-.
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~--Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM--GLSIAIQKLDNKTAT 281 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC--CceeccCCcCHHHHH
Confidence 3 3458899999432 2223333222211 24556888876542 11 11111 256889999999999
Q ss_pred HHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 355 ELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 355 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
+++.+.+-..+......++.+.-|++.++|.|-.+.-+...+
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999988743321112445788889999999998887665443
No 56
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.66 E-value=1.9e-08 Score=90.90 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=35.7
Q ss_pred CccccchhhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 188 GFVGLNSRIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.|+||+.++++|...|. ......+.+.|+|++|+|||+|+++++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 223447899999999999999999999988776
No 57
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=3.9e-07 Score=94.58 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=107.1
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+..++.|.+++..+. ..+.+.++|++|+||||+|+.+++.+........ . . .+.-...+.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~--~----~----Cg~C~sCr~ 81 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG--D----C----CNSCSVCES 81 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C----C----CcccHHHHH
Confidence 455789999999999999886432 3568899999999999999999987642211000 0 0 000111111
Q ss_pred HHHhhcccccccC--CC---CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENIKIR--TP---DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~~~~--~~---~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...........+ .. +....+.... .+++-++|+|+++.. .....|+..+....+...+|++|.+. .
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 1111000000000 00 1111111111 123447999999653 34555555444333455555555433 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
+.... ...+..+++.+++.++....+...+...+. ....+.+..+++.++|.+.-+
T Consensus 162 Ll~TI-~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 162 IPLTI-ISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred hhHHH-HhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 32221 112378999999999999999987643331 122356788999999977533
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=6e-07 Score=88.21 Aligned_cols=177 Identities=16% Similarity=0.147 Sum_probs=109.7
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-----ccceEEEEeeccccccCcChHHHH
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-----FEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
..++|-+...+.|..++..+. -.+...++|+.|+|||++|..++..+... ++....+....+ ....+.. .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~---~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK---KSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC---CCCCHHH-H
Confidence 457898888999999886432 35688999999999999999999865321 222212211000 0012222 2
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCC--CHHHHHHHhcCCCCCCCCcEEEEEeCChhhH-HHhCCC
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVN--KVRQLEYLTGGLDQFGPGSRLIITTRDKQVL-DDFGVL 338 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~~~~~ 338 (524)
+.+...+.... ..+++-++|+|+++ +......++..+....+++.+|++|.+...+ ... ..
T Consensus 79 r~~~~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI-~S 142 (313)
T PRK05564 79 RNIIEEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI-KS 142 (313)
T ss_pred HHHHHHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH-Hh
Confidence 22222211100 12345577777774 4556777877777666788888888765432 211 12
Q ss_pred CcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 339 NTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 339 ~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
.+..+++.+++.++..+++.+...+ ...+.+..++..++|.|.-+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHH
Confidence 2378999999999999988776421 112446788999999987554
No 59
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=7.1e-07 Score=94.81 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.......-. . ..+.-.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~-------~--~c~~c~~c~~ 82 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG-------R--PCGTCEMCRA 82 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-------C--CCccCHHHHH
Confidence 445689999999999999887442 24677899999999999999999876422110000 0 0111122222
Q ss_pred HHHhhcccccccC--CC---CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENIKIR--TP---DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~~~~--~~---~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+............ .. +....+.+.+ .+++-++|||+++.. +..+.|+..+....+...+|+++.+. .
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2221111100000 00 1111122221 234568999999644 45666665554434556666655443 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGS 394 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 394 (524)
+.... ......+++.+++..+....+...+...+.. ...+.+..+++.++|.+..+.....
T Consensus 163 ll~tI-~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 163 VPATI-LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhHHH-HhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33222 1122678999999999999988876443321 2346688899999999976654433
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=1.2e-06 Score=81.90 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=97.2
Q ss_pred CCCccccchh-hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHH
Q 009845 186 FNGFVGLNSR-IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQV 264 (524)
Q Consensus 186 ~~~~vGR~~~-l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 264 (524)
.++|++.... +..+..... + .....+.|+|++|+|||+|+..+++..........|+. .. +....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~----------~~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQ----------AAAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HH----------HhhhhH
Confidence 3556655543 333333332 1 22356999999999999999999988665544444544 11 111111
Q ss_pred HHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----HHHHHHhcCCCC-CCCCcEEEEEeCChhh--------
Q 009845 265 LSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----RQLEYLTGGLDQ-FGPGSRLIITTRDKQV-------- 331 (524)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTsR~~~~-------- 331 (524)
. ..+ +.+ .+.-+|||||++.. .....+...+.. ...+..||+||+...-
T Consensus 85 ~----------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 R----------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H----------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 0 011 111 23358999999532 222223322211 1246679999986521
Q ss_pred -HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 332 -LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 332 -~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
...+.. ...+++++++.++-.+++.+++..... ....+...-|++.++|-.-.+.
T Consensus 147 L~SRl~~--~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 147 LRSRLAQ--CIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHhc--CceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHH
Confidence 111111 267999999999999999987643322 2234667778888887665553
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=5.9e-07 Score=94.61 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=111.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..... . ... .+.-.....
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~p-Cg~C~~C~~ 81 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATP-CGECDNCRE 81 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCC-CCCCHHHHH
Confidence 445789999999999999887432 24567899999999999999998865432100 0 000 011111222
Q ss_pred HHHhhccccc--ccC--CC-CchHHHHHH-----HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENI--KIR--TP-DLPKYMRER-----LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~--~~~--~~-~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...-..... +.. .. +.+..+.+. ..++.-++|||+++.. .....|+..+.......++|++|.+. .
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 2111000000 000 00 111111111 2355669999999643 45666665554434556666555554 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
+.... ...+..+.+.+|+.++..+.+.+.+...+. ....+....|++.++|.+--..
T Consensus 162 Ll~TI-~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 162 LPVTI-LSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred cchHH-HhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 33221 122378999999999999999887633322 2233567789999999886443
No 62
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.64 E-value=1.1e-06 Score=79.58 Aligned_cols=160 Identities=15% Similarity=0.134 Sum_probs=92.9
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc---------------------ccceEEEEeeccccccCcC
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE---------------------FEGKCFMANVREESEKGGG 256 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 256 (524)
.|.+.+..+ .-...+.++|++|+|||++|..++..+... ++...++.... .. .+
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~-~~ 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS-IK 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc-CC
Confidence 345555422 224689999999999999999998875432 11111111000 00 11
Q ss_pred hHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHH
Q 009845 257 LVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLD 333 (524)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~ 333 (524)
. +..+++...+.... ..+.+-++|+||++.. ...+.++..+....+.+.+|++|++. .+..
T Consensus 78 ~-~~i~~i~~~~~~~~---------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 V-DQVRELVEFLSRTP---------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred H-HHHHHHHHHHccCc---------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 1 11111111111000 1244668999999644 34556666655445566777777654 2222
Q ss_pred HhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 009845 334 DFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL 387 (524)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 387 (524)
.. ......+++.+++.++..+++.+.. . ..+.+..+++.++|.|.
T Consensus 142 ~i-~sr~~~~~~~~~~~~~~~~~l~~~g----i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TI-RSRCQVLPFPPLSEEALLQWLIRQG----I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HH-HhhcEEeeCCCCCHHHHHHHHHHcC----C----CHHHHHHHHHHcCCCcc
Confidence 21 1123789999999999999998871 1 13568899999999985
No 63
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.7e-06 Score=90.93 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=111.6
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..-+... ........+.-.....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~-----~~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ-----GGITATPCGVCQACRD 86 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc-----cCCCCCCCCccHHHHH
Confidence 445779999999999999987542 3567899999999999999999886532110000 0000000111111122
Q ss_pred HHHhhcccccccC--CCCchHHHHHHH--------hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-hh
Q 009845 264 VLSEVLDENIKIR--TPDLPKYMRERL--------QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRD-KQ 330 (524)
Q Consensus 264 l~~~l~~~~~~~~--~~~~~~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~-~~ 330 (524)
+...-.......+ ....++.+++.+ .++.-++|||+++.. .....++..+........+|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 2110000000000 001122222222 234458999999654 4456666665544455566655544 33
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
+.... ...+..+++.+++.++..+.+.+.+...+.. ...+.+..|++.++|.+.-+.
T Consensus 167 il~TI-lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTV-LSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHH-HHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 33221 1223789999999999999999877544322 223567888999999875543
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=1.3e-06 Score=91.94 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=114.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccc---eEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG---KCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l 260 (524)
.....++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+...... ..-+.. .+.-..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~--------cg~c~~ 91 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL--------CGVGEH 91 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc--------CcccHH
Confidence 455789999999999999997542 25578899999999999999999875432210 000000 000111
Q ss_pred HHHHHHhhcccccccC--CCCchHHHH---HHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-C
Q 009845 261 REQVLSEVLDENIKIR--TPDLPKYMR---ERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITT-R 327 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~--~~~~~~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTs-R 327 (524)
...+...........+ ....+..++ +.+ .+++-++|+|+++.. .....|+..+....+.+.+|++| .
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 1222211100000000 001111222 222 234558999999544 34566665555445566666555 3
Q ss_pred ChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 328 DKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
...+.... ...+..+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+.-+...
T Consensus 172 ~~kll~tI-~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 172 IRKVPVTV-LSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhhHHH-HhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333222 122378999999999999999987744332 223367788999999998655433
No 65
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.1e-06 Score=89.09 Aligned_cols=200 Identities=14% Similarity=0.138 Sum_probs=111.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccccCcChHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
.....++|.+...+.|.+++..+. -...+.++|++|+||||+|..+++.+...- ...-|....... .+.-...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c~~c 87 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGECESC 87 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCCHHH
Confidence 455789999999999999887442 245688999999999999999998764320 000000000000 0000111
Q ss_pred HHHHHhhcccc--cccC--C-CCchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-
Q 009845 262 EQVLSEVLDEN--IKIR--T-PDLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRD- 328 (524)
Q Consensus 262 ~~l~~~l~~~~--~~~~--~-~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~- 328 (524)
+.+........ .+.. . .+.+..+.+.+ .+.+-++|+|+++.. .....++..+....+.+.+|+++.+
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 11111100000 0000 0 01111222222 234568999999643 3455666555544456666655533
Q ss_pred hhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 009845 329 KQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
..+.... ......+++.+++.++..+.+...+...+ .....+.+..++..++|.+--+..
T Consensus 168 ~kl~~tl-~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 168 HKIPATI-ASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHhHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3333221 11126789999999999999888763322 123346788999999998864443
No 66
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=9.2e-07 Score=95.08 Aligned_cols=174 Identities=22% Similarity=0.295 Sum_probs=101.1
Q ss_pred CCCCCccccchhhh---hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIE---EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
...+.|+|.+..+. .|...+.. +....+.++|++|+||||||+.+++.....|. .+. ... .++.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~~---~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AVL---AGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hhh---hhhHHH
Confidence 34467899998885 56666653 23457889999999999999999987654431 111 000 111111
Q ss_pred HHHHHHhhcccccccCCCCchHHHHHHH--hcCccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEE--EeCChh--hH
Q 009845 261 REQVLSEVLDENIKIRTPDLPKYMRERL--QQMKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLII--TTRDKQ--VL 332 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~ili--TsR~~~--~~ 332 (524)
+..+ ....+.+ .+++.+|||||++. ..+.+.++..+. .+..++| ||.+.. +.
T Consensus 94 -r~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 -RAEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred -HHHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111 1111111 24567999999953 445556665433 3444444 334431 11
Q ss_pred HHhCCCCcceEEeCCCCHHHHHHHHHhhhcC-----CCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 333 DDFGVLNTNIYEVNGLEYHEALELFCNFAFK-----HDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
... ......+.+++|+.++...++.+.+.. .........+....|++.+.|+.--+
T Consensus 154 ~aL-~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KAL-VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHh-hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 111 111267999999999999999886631 01112233466788889998886444
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.59 E-value=3.5e-07 Score=78.85 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=69.1
Q ss_pred cccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhc
Q 009845 190 VGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL 269 (524)
Q Consensus 190 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 269 (524)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.........+++. ....... ....... ...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~-~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELF-GHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHh-hhh-
Confidence 47888889998887632 3568999999999999999999998753322233332 2221110 0000000 000
Q ss_pred ccccccCCCCchHHHHHHHhcCccEEEecCCCCH--H---HHHHHhcCCCCC---CCCcEEEEEeCChh
Q 009845 270 DENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--R---QLEYLTGGLDQF---GPGSRLIITTRDKQ 330 (524)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~---~~~~l~~~~~~~---~~~~~iliTsR~~~ 330 (524)
............++.+|++||++.. . .+...+...... ..+..+|+|+....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999753 2 233333333221 35678888887653
No 68
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.9e-06 Score=86.82 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=107.6
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc--------ccceEEEEeeccccccCc
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE--------FEGKCFMANVREESEKGG 255 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 255 (524)
.....++|.+..++.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... +...++-. ... .. .
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~~-~ 88 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-SN-N 88 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-cC-C
Confidence 45577899999999999998743 235688999999999999999998875431 11111111 000 00 1
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVL 332 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~ 332 (524)
+... ...++.++... -..+++-++++|+++.. ..+..++..+......+.+|+++... .+.
T Consensus 89 ~~~~-i~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 89 SVDD-IRNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred CHHH-HHHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 1111 11222211100 01234558999999643 33555554443323445555555332 222
Q ss_pred HHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 333 DDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
.... .....+++.+++.++...++...+...+.. ...+.+..++..++|.+-.+.
T Consensus 153 ~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 153 PTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred HHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHHH
Confidence 2211 112679999999999999998877543321 224678889999999876443
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2e-06 Score=89.30 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=108.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc---------------------cceE
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF---------------------EGKC 242 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~ 242 (524)
.....+||-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+-... +..+
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445679999999999999997432 255788999999999999999998653211 0111
Q ss_pred EEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCc
Q 009845 243 FMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGS 320 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 320 (524)
.+.. ....++.++ +.++..+... -..++.-++|+|+++.. .....++..+....+.+
T Consensus 92 eida-----as~~~v~~i-R~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 92 EVDA-----ASRTKVEDT-RELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEcc-----cccCCHHHH-HHHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 1110 000112111 1122111100 01244568999999653 44555665555444566
Q ss_pred EEEEEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 321 RLIITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 321 ~iliTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
++|++|.+. .+.... ...+..+++.+++.++..+.+...+-..+.. ...+.+..|++.++|.+.-+.
T Consensus 151 ~fIlattd~~kl~~tI-~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 151 KFILATTDHHKLPVTV-LSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEEEEECChHhchHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 666655443 222221 1112678999999999988887776443322 223567788999999885443
No 70
>PRK09087 hypothetical protein; Validated
Probab=98.57 E-value=2.5e-06 Score=79.24 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=87.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.+.+.|+|++|+|||+|++.++.... ..++.. ..+...++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh--------------------hh
Confidence 46799999999999999998887532 123331 0111111110 11
Q ss_pred cCccEEEecCCCCH----HHHHHHhcCCCCCCCCcEEEEEeCCh---------hhHHHhCCCCcceEEeCCCCHHHHHHH
Q 009845 290 QMKIFIVLDDVNKV----RQLEYLTGGLDQFGPGSRLIITTRDK---------QVLDDFGVLNTNIYEVNGLEYHEALEL 356 (524)
Q Consensus 290 ~~~~LlVlDdv~~~----~~~~~l~~~~~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~l 356 (524)
.-+|++||++.. +.+-.+...+. ..|..+|+|++.. .+...+.. ...+++++++.++-.++
T Consensus 88 --~~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~--gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 --EGPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKA--ATVVEIGEPDDALLSQV 161 (226)
T ss_pred --cCeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhC--CceeecCCCCHHHHHHH
Confidence 127889999432 22333332222 3467789988743 22222222 27899999999999999
Q ss_pred HHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 357 FCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
+.+.+.... ....++...-|++.+.|..-.+..+...|
T Consensus 162 L~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 162 IFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 998874432 12334677888888888887776544433
No 71
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.56 E-value=2.4e-06 Score=80.08 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=97.0
Q ss_pred CCcc-ccc-hhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHH
Q 009845 187 NGFV-GLN-SRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQV 264 (524)
Q Consensus 187 ~~~v-GR~-~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 264 (524)
++|+ |-. ..+..+..+... ...+.+.|+|++|+|||+|+..+++..........|+. +.... .....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~-------~~~~~- 90 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA-------WFVPE- 90 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh-------hhhHH-
Confidence 3444 622 234444444432 23468999999999999999999987664433334443 11100 00000
Q ss_pred HHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH---HHHH-HHhcCCCCC-CCC-cEEEEEeCChhh-------
Q 009845 265 LSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV---RQLE-YLTGGLDQF-GPG-SRLIITTRDKQV------- 331 (524)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~~-~~iliTsR~~~~------- 331 (524)
+.+.+.. --+|+|||+... ..++ .+...+... ..| .++|+||+....
T Consensus 91 -------------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 -------------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -------------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 1111111 247999999543 2222 222222111 123 479999986522
Q ss_pred --HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 009845 332 --LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSF 395 (524)
Q Consensus 332 --~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 395 (524)
.+.+.. ..++++.+++.++-.+++.+.+.... ....++...-|++++.|..-.+..+...
T Consensus 151 ~L~SRl~~--g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 151 DLASRLDW--GQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHhC--CceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 122222 26799999999999999988664332 2233467778888888887766554443
No 72
>PRK05642 DNA replication initiation factor; Validated
Probab=98.56 E-value=4.2e-06 Score=78.35 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=90.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
...+.|+|++|+|||.|++.+++.+......++|+. .. ++.... ..+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~----------~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LA----------ELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HH----------HHHhhh-----------------HHHHHhhh
Confidence 367899999999999999999987654433344444 11 111110 11222223
Q ss_pred cCccEEEecCCCCH---HHH-HHHhcCCCCC-CCCcEEEEEeCChhh-H--------HHhCCCCcceEEeCCCCHHHHHH
Q 009845 290 QMKIFIVLDDVNKV---RQL-EYLTGGLDQF-GPGSRLIITTRDKQV-L--------DDFGVLNTNIYEVNGLEYHEALE 355 (524)
Q Consensus 290 ~~~~LlVlDdv~~~---~~~-~~l~~~~~~~-~~~~~iliTsR~~~~-~--------~~~~~~~~~~~~l~~L~~~ea~~ 355 (524)
+-. +||+||+... ..+ +.+...+... ..|..+|+|++.... . +.+.. ..++++.+++.++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~--gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL--ALVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc--CeeeecCCCCHHHHHH
Confidence 222 6889999532 222 2233322211 346678888875421 1 11111 2568999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 356 LFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 356 ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
++...+..... ....+...-|++.+.|..-.+..+...|
T Consensus 174 il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 174 ALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99865533321 1224677778888888877665554443
No 73
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=7.4e-07 Score=93.05 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+....... ... .+.-.....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~p--------cg~C~~C~~ 81 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--ATP--------CGVCSACLE 81 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CCC--------CCCCHHHHH
Confidence 445679999999999999987432 245778999999999999999988753221000 000 000000011
Q ss_pred HHHhhcccc--cccCCCCchHHHH---HHH-----hcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDEN--IKIRTPDLPKYMR---ERL-----QQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~--~~~~~~~~~~~l~---~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...-.... .+.........++ ... .+++-++|+|+++... ....++..+........+|++|.+. .
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 100000000 0000000111111 111 2456699999997543 3555665555434556666555443 2
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL 387 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 387 (524)
+.... ...+..+++.+++.++..+.+.+.+...+.. ...+.+..|++.++|.+.
T Consensus 162 il~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 162 IPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred CchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 22111 1112679999999999999988876433321 233566888999999875
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=3.1e-06 Score=92.26 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=108.9
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccc---eEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG---KCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l 260 (524)
.....+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+...... .|-.+ ..
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C-------------~s 77 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC-------------DS 77 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc-------------HH
Confidence 345679999999999999987432 24578899999999999999999876421100 00000 00
Q ss_pred HHHHHHh----hcccccccCC---CCchHHHHHH-----HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe
Q 009845 261 REQVLSE----VLDENIKIRT---PDLPKYMRER-----LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITT 326 (524)
Q Consensus 261 ~~~l~~~----l~~~~~~~~~---~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTs 326 (524)
...+... ......+... .+.+..+.+. ..++.-++|||+++.. .....|+..+......+.+|++|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 1111100 0000000000 0111111111 2345558999999654 44555666555445566666555
Q ss_pred CCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 327 RDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 327 R~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
.+. .+.... ...+..|++.+++.++..+++.+.+...+.. ...+.+..|++.++|.+..+
T Consensus 158 t~~~kLl~TI-rSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 158 TEPDKVIGTI-RSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CChhhhhHHH-HhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 443 333322 2223789999999999999998876433321 23356678899999988443
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.54 E-value=1.4e-06 Score=88.00 Aligned_cols=174 Identities=22% Similarity=0.295 Sum_probs=98.3
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
...+.|++.++++|...+.. +-...+.|.++|++|+|||+||+.+++..... |+...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v~------- 197 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVV------- 197 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEee-------
Confidence 35688999999999886631 11235679999999999999999999876533 22100
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-------------H---HHHHhcCCCCC--
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-------------Q---LEYLTGGLDQF-- 316 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~---~~~l~~~~~~~-- 316 (524)
...+..... +.. .......+...-...+.+|+||+++... . +..++..+...
T Consensus 198 --~~~l~~~~~---g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 198 --GSELVQKFI---GEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --hHHHhHhhc---cch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 011111110 000 0001111222223567899999996541 1 22233222221
Q ss_pred CCCcEEEEEeCChhhHHH-h----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 GPGSRLIITTRDKQVLDD-F----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 ~~~~~iliTsR~~~~~~~-~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+.. . ..+ ..+++++.+.++-.++|..+..+...... .....+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd--~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFD--RIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCc--eEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 134567777765433221 1 112 57999999999999999987744332211 12455677777653
No 76
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.54 E-value=3.5e-06 Score=77.69 Aligned_cols=260 Identities=15% Similarity=0.160 Sum_probs=144.3
Q ss_pred CCCCCCccccchhhhhHHHhhccC---CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIG---LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|.....|||-+...+.|.-.+... ....-.+.++||||.||||||.-+++.+..++. +... ... ....+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsG-p~l---eK~gD 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSG-PAL---EKPGD 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----eccc-ccc---cChhh
Confidence 445678999999888887766422 223568999999999999999999998765532 1100 000 01111
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-HHHHHh-cCCCC--------CCCCcE--------
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-QLEYLT-GGLDQ--------FGPGSR-------- 321 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~l~-~~~~~--------~~~~~~-------- 321 (524)
+ ..++..+ ...=+|++|++.... ..++++ +.+.. .+++++
T Consensus 94 l-aaiLt~L---------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 94 L-AAILTNL---------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred H-HHHHhcC---------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 1111111 123467788884332 222222 22211 123332
Q ss_pred ---EEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcC
Q 009845 322 ---LIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQ 398 (524)
Q Consensus 322 ---iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 398 (524)
|=-|||...+..-+......+.+++-.+.+|-.+++.+.+..-+ .+...+.+.+|+++..|-|--..-+.+..++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 23488866443222111125678999999999999998773322 2333467899999999999755544444432
Q ss_pred CCHHHHHHHHHHhhcCCC----ccHHHHHhhccccCChhhHhHhhhhcccc--CCCCHHHHHHHHHhcCc-----cHHHH
Q 009845 399 KSKLEWENALENLKMISD----PDIYDVLKISYNELKLEEKNIFLDIACFF--AGEDKDFVLRILEVSNC-----VLNVL 467 (524)
Q Consensus 399 ~~~~~~~~~l~~l~~~~~----~~i~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~~~~~~~~-----~l~~L 467 (524)
+..+... ..-+ ......|..-=..|+.-.+..|..+.-.. ++...+.+...+..+.. +=--|
T Consensus 230 -----fa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyL 302 (332)
T COG2255 230 -----FAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 (332)
T ss_pred -----HHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHH
Confidence 1100000 0000 01222233333456666666666655433 44566666666554433 33458
Q ss_pred hhCCCceecCCCeE
Q 009845 468 VHKSLITLSYSNKL 481 (524)
Q Consensus 468 ~~~sLi~~~~~~~~ 481 (524)
++.|+|+....|+.
T Consensus 303 iq~gfi~RTpRGR~ 316 (332)
T COG2255 303 IQQGFIQRTPRGRI 316 (332)
T ss_pred HHhchhhhCCCcce
Confidence 88999998877764
No 77
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.8e-06 Score=88.77 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=112.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+-......- .. .+.-...+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~------~p----Cg~C~sC~~ 81 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG------EP----CNTCEQCRK 81 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC------CC----CcccHHHHH
Confidence 445678999999999999887432 2568889999999999999999987542110000 00 000011111
Q ss_pred HHHhhcccccccC---C--CCchHHHHHH-----HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENIKIR---T--PDLPKYMRER-----LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~~~~---~--~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...........+ . .+....+.+. ..+++-++|||+++.. .....|+..+........+|++|.+. .
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 1111000000000 0 0111112211 1345669999999654 44566666554333455566655553 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP-LALRVLGSFL 396 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~l 396 (524)
+.... ...+..+++.+++.++..+.+...+..... ....+.+..|++.++|.+ .++..+...+
T Consensus 162 ll~TI-~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTI-VSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHH-HhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33221 112267899999999999999887644332 123467788999999976 5666665443
No 78
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.51 E-value=5e-06 Score=85.12 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=95.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccc-eEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEG-KCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...+.|+|++|+|||+|+..+++.+...++. .+.+.. ..++...+...+... ....+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~--------~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG--------KLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc--------cHHHHHHHH
Confidence 4469999999999999999999987665432 333321 123334443333211 112233344
Q ss_pred hcCccEEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeC-ChhhHHHh----C--CCCcceEEeCCCCHHHHHHH
Q 009845 289 QQMKIFIVLDDVNKVR----QLEYLTGGLDQ-FGPGSRLIITTR-DKQVLDDF----G--VLNTNIYEVNGLEYHEALEL 356 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsR-~~~~~~~~----~--~~~~~~~~l~~L~~~ea~~l 356 (524)
....-+|+|||++... .-+.+...+.. ...+..||+||. .+.-+... . ......+++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 4456689999996431 11223222211 123456888875 33222111 0 11125789999999999999
Q ss_pred HHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 357 FCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
+.+.+..... ....+.+.-|++.+.|+--.|.-+-
T Consensus 272 L~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 272 ARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHhcCC--CCCHHHHHHHHhccccCHHHHHHHH
Confidence 9988743322 1234678888998888866665443
No 79
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.9e-06 Score=87.88 Aligned_cols=198 Identities=14% Similarity=0.135 Sum_probs=108.9
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccccCcChHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
.....++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+-..- ....|....... .+.-...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~sC 87 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECESC 87 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCHHH
Confidence 445789999999999999887432 245688999999999999999998754321 000111000000 0111111
Q ss_pred HHHHHh--hccccccc--CC-CCchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-
Q 009845 262 EQVLSE--VLDENIKI--RT-PDLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRD- 328 (524)
Q Consensus 262 ~~l~~~--l~~~~~~~--~~-~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~- 328 (524)
+.+... +.....+. .. .+.+..+.+.+ .+.+-++|+||++.. .....|+..+....+...+|++|.+
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 111111 00000000 00 01111112222 234558899999654 3455666555543445555555543
Q ss_pred hhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 329 KQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
..+.... ...+..+++.+++.++....+.+.+...+. ....+.+..+++.++|..--+
T Consensus 168 ~kLl~TI-~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 168 HKIPATI-ASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhhhHHH-HhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHH
Confidence 3333221 122378999999999999988876643221 123467788999999976533
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=6.6e-06 Score=86.30 Aligned_cols=190 Identities=16% Similarity=0.137 Sum_probs=107.6
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+....... . .. .+.-.....
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~p--------Cg~C~~C~~ 78 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-TP--------CGVCESCVA 78 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-Cc--------ccccHHHHH
Confidence 445679999999999999997432 245678999999999999999998654221000 0 00 000001111
Q ss_pred HHHhhcc--c--ccccCC---CCchHHHHHHH-----hcCccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeC-C
Q 009845 264 VLSEVLD--E--NIKIRT---PDLPKYMRERL-----QQMKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTR-D 328 (524)
Q Consensus 264 l~~~l~~--~--~~~~~~---~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR-~ 328 (524)
+...-+. . ..+... .+.+..+.+.+ .++.-++|+|+++. ......|+..+........+|++|. .
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1100000 0 000000 01111111111 24456899999954 3455666655554445565555554 3
Q ss_pred hhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 009845 329 KQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL 387 (524)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 387 (524)
..+..... ..+..+++.+++.++..+++.+.+...+.. ...+.+..|++.++|.+-
T Consensus 159 ~kll~TI~-SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 159 EKVLPTIR-SRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HhhHHHHH-HhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 33333221 113789999999999999998877443322 223566778899999875
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.48 E-value=2.1e-06 Score=93.88 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc------
Q 009845 165 LVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF------ 238 (524)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------ 238 (524)
.+.+...++..+..+ ...+.++||+.+++.+...|.... ..-+.++|++|+|||++|..+++++....
T Consensus 164 ~l~~~~~~l~~~~r~----~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN----GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHHhc----CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 344444444444433 344679999999999999886432 34567999999999999999999864321
Q ss_pred cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-----------HHHH
Q 009845 239 EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-----------RQLE 307 (524)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~ 307 (524)
...+|..+.. .+.... ...+. ....+...+.+.-..++++|++|+++.. +..+
T Consensus 238 ~~~~~~~~~~----------~l~a~~-~~~g~-----~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 238 NAKIYSLDMG----------SLLAGT-KYRGD-----FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CCeEEEecHH----------HHhhhc-cccch-----HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 2223332211 111000 00000 0001122222222346899999999532 1222
Q ss_pred HHhcCCCCCCCCcEEEEEeCChhhHH------H-hCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 308 YLTGGLDQFGPGSRLIITTRDKQVLD------D-FGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 308 ~l~~~~~~~~~~~~iliTsR~~~~~~------~-~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
.+.+.+. ....++|-+|.....-. . .... +.+++++++.++..+++....
T Consensus 302 ~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRF--QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence 3333332 12234454444322110 1 1112 679999999999999999655
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.46 E-value=5.3e-06 Score=85.73 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=94.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccce-EEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGK-CFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...+.|+|++|+|||+|++.+++.+...++.. +.+.. ...+...+...+... ....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN--------TMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC--------cHHHHHHHH
Confidence 46799999999999999999999887665332 22221 122333333333211 122333444
Q ss_pred hcCccEEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCChh-hHH----Hh--CCCCcceEEeCCCCHHHHHHH
Q 009845 289 QQMKIFIVLDDVNKVR----QLEYLTGGLDQ-FGPGSRLIITTRDKQ-VLD----DF--GVLNTNIYEVNGLEYHEALEL 356 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsR~~~-~~~----~~--~~~~~~~~~l~~L~~~ea~~l 356 (524)
+ +.-+|+|||++... ..+.+...+.. ...+..+|+||.... .+. .. .......+++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 35589999995321 12233322211 123456778776542 111 11 111125799999999999999
Q ss_pred HHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 357 FCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
+.+.+.... ..-.++.+.-|++.+.|..-.|.-+
T Consensus 289 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 289 LKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 999875422 2233467888999999987765433
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.45 E-value=3.7e-06 Score=92.74 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc------
Q 009845 165 LVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF------ 238 (524)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------ 238 (524)
.+++...++..+..+ ...+.++||+.++.++...|.... ..-+.++|++|+|||+||..+++++....
T Consensus 169 ~l~~~~~~L~~~~r~----~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQARE----GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHhcC----CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 344444444443333 455789999999999999886432 33567999999999999999999864331
Q ss_pred cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH-hcCccEEEecCCCCHH---------HHH-
Q 009845 239 EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL-QQMKIFIVLDDVNKVR---------QLE- 307 (524)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~- 307 (524)
...+|..++...........+... .+...+.+.. .+++++|++|++.... +..
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~----------------~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFEN----------------RLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHH----------------HHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH
Confidence 122332222211000000000000 1111222221 2468999999994431 111
Q ss_pred HHhcCCCCCCCCcEEEEEeCChhhHHHhC-----CCCcceEEeCCCCHHHHHHHHHhhhcCCC--CCCchHHHHHHHHHH
Q 009845 308 YLTGGLDQFGPGSRLIITTRDKQVLDDFG-----VLNTNIYEVNGLEYHEALELFCNFAFKHD--YCLDDLLVLLEHVVK 380 (524)
Q Consensus 308 ~l~~~~~~~~~~~~iliTsR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~ll~~~~~~~~--~~~~~~~~~~~~i~~ 380 (524)
.+.+.+. ....++|-+|.....-.... ....+.+.+++++.+++.+++......-. .......+....+++
T Consensus 307 ~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ 384 (852)
T TIGR03345 307 LLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE 384 (852)
T ss_pred HhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence 2333332 12345565555432211000 01126899999999999999754432111 111122344555666
Q ss_pred HhCCC
Q 009845 381 YANGN 385 (524)
Q Consensus 381 ~~~G~ 385 (524)
.+.++
T Consensus 385 ls~ry 389 (852)
T TIGR03345 385 LSHRY 389 (852)
T ss_pred Hcccc
Confidence 66554
No 84
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.2e-05 Score=83.14 Aligned_cols=191 Identities=13% Similarity=0.091 Sum_probs=108.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-----ccceEEEEeeccccccCcChH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-----FEGKCFMANVREESEKGGGLV 258 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 258 (524)
.....++|-+..++.|.+++..+. -...+.++|++|+||||+|+.++..+... .++...
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c--------------- 76 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC--------------- 76 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc---------------
Confidence 345678999999999999997532 35577899999999999999998865421 010000
Q ss_pred HHHHHHHHh----hc-ccccccCCCCchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe
Q 009845 259 HLREQVLSE----VL-DENIKIRTPDLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITT 326 (524)
Q Consensus 259 ~l~~~l~~~----l~-~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTs 326 (524)
.-...+... +. .........+....+.... .+++-++|+|+++.. .....++..+....+...+|++|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 000000000 00 0000000001111222222 245569999999644 34555655554434455555554
Q ss_pred CC-hhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 327 RD-KQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 327 R~-~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
.+ ..+..... ..+..+++.+++.++....+.+.+-..+. ....+.+..++..++|.+..+....
T Consensus 157 t~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 157 TEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 33322211 11267999999999999999987644332 2233667889999999886554443
No 85
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.45 E-value=2.4e-06 Score=81.56 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=81.6
Q ss_pred CccccchhhhhHHHhhc----------c---CCCCceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccc
Q 009845 188 GFVGLNSRIEEIKSLLC----------I---GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESE 252 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~----------~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 252 (524)
.++|.+...++|..... . ..+....+.++|++|+||||+|+.+++.+.... ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec----
Confidence 36777766666553321 1 123356788999999999999999988653211 1112221 10
Q ss_pred cCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh-cCccEEEecCCCCH----------HHHHHHhcCCCCCCCCcE
Q 009845 253 KGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ-QMKIFIVLDDVNKV----------RQLEYLTGGLDQFGPGSR 321 (524)
Q Consensus 253 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~~~~ 321 (524)
..++..... +. ....+...+. ....+|+||+++.. +.++.++..+........
T Consensus 82 ----~~~l~~~~~---g~---------~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 82 ----RADLVGEYI---GH---------TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred ----HHHhhhhhc---cc---------hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 111111110 00 0111122221 12458999999642 345556655543333445
Q ss_pred EEEEeCChhhHH------HhCCCCcceEEeCCCCHHHHHHHHHhhhcC
Q 009845 322 LIITTRDKQVLD------DFGVLNTNIYEVNGLEYHEALELFCNFAFK 363 (524)
Q Consensus 322 iliTsR~~~~~~------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~ 363 (524)
+++++.....-. .....-...+.+++++.++-.+++.+.+..
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 555554332210 111111256899999999999999887743
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=1.1e-05 Score=83.30 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=110.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccc--eEEEE---------------
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEG--KCFMA--------------- 245 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~--------------- 245 (524)
.....++|-+...+.|...+..+. -.....++|++|+||||+|+.+++.+-.. ... .|..+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 445679999999999999987442 35677999999999999999998865321 100 00000
Q ss_pred eeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEE
Q 009845 246 NVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLI 323 (524)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~il 323 (524)
..... .. .++..+.. ++...... -..++.-++|+|+++.. +....|+..+....+.+++|
T Consensus 90 eldaa-s~-~gId~IRe-lie~~~~~---------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 90 EMDAA-SN-RGIDDIRE-LIEQTKYK---------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred Eeccc-cc-cCHHHHHH-HHHHHhhC---------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 00000 00 11111111 11110000 00134568999999644 44556665554445567777
Q ss_pred EEeCChh-hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 324 ITTRDKQ-VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 324 iTsR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
++|.+.. +.... ...+..+++.+++.++..+.+...+...+.. ...+.+..|++.++|.+.-+..+
T Consensus 152 L~ttd~~kL~~tI-~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATI-LSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHH-HhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 7776542 21111 1123789999999999999998877544322 23467788999999998555443
No 87
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.5e-05 Score=78.50 Aligned_cols=175 Identities=14% Similarity=0.204 Sum_probs=104.6
Q ss_pred CCCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhcccccc-e-EEEEeeccccccCcChHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG-K-CFMANVREESEKGGGLVH 259 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~-~~~~~~~~~~~~~~~~~~ 259 (524)
..+..++||+.|+..+..++... .+..+.+-|.|.+|.|||.+...++.+....... . +++. +... .....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c~sl----~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-CTSL----TEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-eccc----cchHH
Confidence 34578999999999999998642 3446789999999999999999999887666544 2 3333 3222 33445
Q ss_pred HHHHHHHhhcccccccCC-CCchHHHHHHHhc--CccEEEecCCCCHHHH--HHHhcCCCC-CCCCcEEEEEeCChh---
Q 009845 260 LREQVLSEVLDENIKIRT-PDLPKYMRERLQQ--MKIFIVLDDVNKVRQL--EYLTGGLDQ-FGPGSRLIITTRDKQ--- 330 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~-~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~--~~l~~~~~~-~~~~~~iliTsR~~~--- 330 (524)
++..+...+......... .+....+.....+ ..+|+|+|+.+....- ..+...+.| --+++++|+..-...
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 666666554221111111 2344444444443 3689999999655321 111111111 124566554332221
Q ss_pred ---hHHHhCC---CCcceEEeCCCCHHHHHHHHHhhhcC
Q 009845 331 ---VLDDFGV---LNTNIYEVNGLEYHEALELFCNFAFK 363 (524)
Q Consensus 331 ---~~~~~~~---~~~~~~~l~~L~~~ea~~ll~~~~~~ 363 (524)
.+..+.. -....+..+|.+.++..++|..++-.
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 1111111 11367889999999999999998843
No 88
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=5.5e-06 Score=84.95 Aligned_cols=186 Identities=15% Similarity=0.204 Sum_probs=107.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc----ceEEEE-eeccc--------
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE----GKCFMA-NVREE-------- 250 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~-~~~~~-------- 250 (524)
.....++|.+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+...-. ..|-.+ ++...
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 445789999999999999987432 2467889999999999999999886532200 000000 00000
Q ss_pred ---c-ccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEE
Q 009845 251 ---S-EKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLII 324 (524)
Q Consensus 251 ---~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ili 324 (524)
. ....++..+ +++...+. ..-..+.+-++|+|+++.. .....|+..+........+|+
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 0 000111111 11111000 0001245678999999644 345555555544345566666
Q ss_pred EeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 325 TTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 325 TsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
+|.+. .+.... ...+..+++.+++.++..+.+...+...+. ....+.+..|+..++|.+.-+
T Consensus 157 ~t~~~~kl~~tI-~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 157 ATTEIHKIPGTI-LSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred EeCChHhcchHH-HHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 66433 222211 112267999999999999998887643321 123467888999999987533
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.42 E-value=7.4e-06 Score=83.57 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=94.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccc-eEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEG-KCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...+.|+|++|+|||+|++.+++.+....+. .+.+.. ..++...+...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 4578999999999999999999987665432 222221 122333333333211 122333334
Q ss_pred hcCccEEEecCCCCHH----HHHHHhcCCCCC-CCCcEEEEEeCChh-hHHHh------CCCCcceEEeCCCCHHHHHHH
Q 009845 289 QQMKIFIVLDDVNKVR----QLEYLTGGLDQF-GPGSRLIITTRDKQ-VLDDF------GVLNTNIYEVNGLEYHEALEL 356 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~----~~~~l~~~~~~~-~~~~~iliTsR~~~-~~~~~------~~~~~~~~~l~~L~~~ea~~l 356 (524)
++ .-+|+|||++... ..+.+...+... ..+..+|+||.... .+..+ .......+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 4589999995431 112233222111 23556778776432 11111 011124689999999999999
Q ss_pred HHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 357 FCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
+.+.+...+. ....+.+..|++.+.|..-.|.-+.
T Consensus 277 l~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 277 LQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9988754332 2234678888899998887665443
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.3e-05 Score=85.21 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=111.7
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+...+.|..++..+. -.+.+.++|++|+||||+|+.+++.+........-.. . .+.-...+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~------~--Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE------P--CGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC------C--CcccHHHHH
Confidence 445679999999999999987542 2457889999999999999999987543211000000 0 111122222
Q ss_pred HHHhhccccc--ccCCCCchHHHHHH---H-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDENI--KIRTPDLPKYMRER---L-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~~~--~~~~~~~~~~l~~~---l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+......... ........+.+++. + .+++-++|+|+++.. +....|+..+........+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 2222111000 00000112222222 1 234568999999754 44566665554433445555554443 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
+.... ...+..+++.+++.++....+...+...+.. ...+.+..+++.++|.+..+..+.
T Consensus 164 llpTI-rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 164 VLPTI-ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hhHHH-HhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 1223778999999999998888766433211 223567889999999886554433
No 91
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.7e-05 Score=83.31 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=111.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..++.|..++..+. -.+.+.++|++|+||||+|+.+++.+-..-.....- + +.-.....
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p--C--------~~C~~C~~ 81 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP--C--------GECSSCKS 81 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC--C--------ccchHHHH
Confidence 445789999999999999997432 356789999999999999999998754221000000 0 00000011
Q ss_pred HHHhhccc--ccccCCCCchHHHHHH--------HhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 009845 264 VLSEVLDE--NIKIRTPDLPKYMRER--------LQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-Q 330 (524)
Q Consensus 264 l~~~l~~~--~~~~~~~~~~~~l~~~--------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~ 330 (524)
+...-... ............+++. ..+++-++|+|+++.. .....|+..+....+...+|++|.+. .
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 11000000 0000000011111111 1345668999999644 45666776665545566666665443 3
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
+.... ...+..+++.+++.++..+.+.+.+...+.. ...+.+..|++.++|.+..+.
T Consensus 162 L~~tI-~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 162 LPATI-KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hHHHH-HHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 32221 1123679999999999999998877443322 234677889999999886443
No 92
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.39 E-value=2.6e-06 Score=83.99 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=86.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++.....+ ..+. ... ..... .+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~-i~~ 86 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDF-VRN 86 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHH-HHH
Confidence 445779999999999999987432 356788899999999999999988763221 2222 111 11111 111
Q ss_pred HHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCCCCc
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV---RQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGVLNT 340 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~ 340 (524)
.+....... .+.+.+-+||+|+++.. +....+...+.....++++|+||.....+...-....
T Consensus 87 ~l~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 87 RLTRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111110000 01134568999999654 2222333223333466788888865432211101112
Q ss_pred ceEEeCCCCHHHHHHHHHh
Q 009845 341 NIYEVNGLEYHEALELFCN 359 (524)
Q Consensus 341 ~~~~l~~L~~~ea~~ll~~ 359 (524)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 5678888888887766554
No 93
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.39 E-value=3.2e-05 Score=70.60 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
.+.+++.|+|.-|.|||.+.+.....+.+.-...+.+. ....+...+...+...+.. .+..........+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHH
Confidence 45679999999999999999965554443222222221 1214556677777777655 2221111122222222
Q ss_pred ----H-hcCc-cEEEecCCCCH--HHHH---HHhcCCCCCCCCcEEEEEeCCh-------hhHHHhCCCCcce-EEeCCC
Q 009845 288 ----L-QQMK-IFIVLDDVNKV--RQLE---YLTGGLDQFGPGSRLIITTRDK-------QVLDDFGVLNTNI-YEVNGL 348 (524)
Q Consensus 288 ----l-~~~~-~LlVlDdv~~~--~~~~---~l~~~~~~~~~~~~iliTsR~~-------~~~~~~~~~~~~~-~~l~~L 348 (524)
. ++++ +.+++|++.+. +.++ -|...-......-+|+.....+ ......+.. ... |+++|+
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R-~~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR-IDIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe-EEEEEecCCc
Confidence 2 3555 99999999432 3333 3332222112222344433222 111111111 134 899999
Q ss_pred CHHHHHHHHHhhhcCCCCCCc-hHHHHHHHHHHHhCCChHHHHHHHHH
Q 009845 349 EYHEALELFCNFAFKHDYCLD-DLLVLLEHVVKYANGNPLALRVLGSF 395 (524)
Q Consensus 349 ~~~ea~~ll~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~~~~~ 395 (524)
+.++...++..++.+...+.+ -..+....|.....|.|.++..++..
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999988865443332 23456778999999999999887654
No 94
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=6.8e-06 Score=87.28 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=106.6
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|-+..++.|..++..+. -.+.+.++|++|+|||++|+.++..+-.......+-. +. ....
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~-----------~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQ-----------ECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hh-----------HHHH
Confidence 445679999999999999997432 3567889999999999999999886532111000000 00 0000
Q ss_pred HHHh-hccccccc-C-C-CCchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CChhh
Q 009845 264 VLSE-VLDENIKI-R-T-PDLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITT-RDKQV 331 (524)
Q Consensus 264 l~~~-l~~~~~~~-~-~-~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTs-R~~~~ 331 (524)
.... ...-.... . . .+.+..+.+.+ .+++-++|+|+++.. .....|+..+........+|++| ....+
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 0000 00000000 0 0 01111222222 245569999999643 45566665554434455545444 44333
Q ss_pred HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 332 LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
.... ...+..+++.+++.++..+.+...+-..+. ....+.+..+++.++|.+.-+
T Consensus 162 l~TI-~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 162 PLTI-LSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hHHH-HhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 122378999999999999999886633321 122356788999999977533
No 95
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.4e-05 Score=82.01 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=107.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccc---------------------eE
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG---------------------KC 242 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---------------------~~ 242 (524)
.....++|.+...+.|..++..+. -...+.++|+.|+||||+|+.++..+...... .+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 445679999999999999987432 25678999999999999999998865321100 00
Q ss_pred EEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCc
Q 009845 243 FMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGS 320 (524)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 320 (524)
...+. ... .+... .+.++.++.... ..+++-++|+|+++.. .....|+..+......+
T Consensus 93 ~~ld~---~~~-~~vd~-Ir~li~~~~~~P---------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 93 HELDA---ASN-NSVDD-IRNLIEQVRIPP---------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred EEecc---ccc-CCHHH-HHHHHHHHhhCc---------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 00000 000 11111 111111110000 1234458899999654 34556665555434555
Q ss_pred EEEEEe-CChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 321 RLIITT-RDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 321 ~iliTs-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
.+|++| ....+.... ...+..+++.+++.++....+.+.+...+.. ...+.+..|++.++|..--+
T Consensus 153 ifIL~tt~~~kIl~tI-~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 153 IFILATTEKHKILPTI-LSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEEeCCchhchHHH-HhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 655544 444443332 1223789999999999999998876443322 22356788999999977544
No 96
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=1.5e-05 Score=83.06 Aligned_cols=159 Identities=15% Similarity=0.206 Sum_probs=92.6
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccccc-ceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
..+.|+|..|+|||.|+..+++.....+. ..+.+. ...++...+...+... ....+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi----------taeef~~el~~al~~~--------~~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV----------SSEEFTNEFINSIRDG--------KGDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe----------eHHHHHHHHHHHHHhc--------cHHHHHHHhh
Confidence 45899999999999999999998765432 223232 1223333333332211 1222333333
Q ss_pred cCccEEEecCCCCH---HH-HHHHhcCCCCC-CCCcEEEEEeCChh---------hHHHhCCCCcceEEeCCCCHHHHHH
Q 009845 290 QMKIFIVLDDVNKV---RQ-LEYLTGGLDQF-GPGSRLIITTRDKQ---------VLDDFGVLNTNIYEVNGLEYHEALE 355 (524)
Q Consensus 290 ~~~~LlVlDdv~~~---~~-~~~l~~~~~~~-~~~~~iliTsR~~~---------~~~~~~~~~~~~~~l~~L~~~ea~~ 355 (524)
+ .-+|+|||+... +. -+.|...+... ..+..|||||.... +...+.. .-+++|.+.+.+.-.+
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~--GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW--GLITDVQPPELETRIA 453 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc--CceEEcCCCCHHHHHH
Confidence 3 358889999433 11 12232222211 23567888887641 1111211 2678999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 356 LFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 356 ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
++.+.+..... ....+++.-|++.+.++.-.|.-+
T Consensus 454 IL~kka~~r~l--~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 454 ILRKKAVQEQL--NAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHhcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99988754332 223467777888888776655443
No 97
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.32 E-value=7e-06 Score=84.36 Aligned_cols=160 Identities=18% Similarity=0.294 Sum_probs=88.1
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhccccc-----ceEEEEeecc
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-----GKCFMANVRE 249 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~ 249 (524)
...+.|.+..++++...+.. +-...+-+.++||+|+|||++|+.+++.+...+. ...|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 35677899998888876531 1123567999999999999999999998765421 223332 111
Q ss_pred ccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH-HhcCccEEEecCCCCHH--------------HHHHHhcCCC
Q 009845 250 ESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER-LQQMKIFIVLDDVNKVR--------------QLEYLTGGLD 314 (524)
Q Consensus 250 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~ 314 (524)
. .+..... +...... ..+....+.. ..+++++|+||+++... .+..++..+.
T Consensus 260 ~--------eLl~kyv---Gete~~i--r~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 P--------ELLNKYV---GETERQI--RLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred h--------hhccccc---chHHHHH--HHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 0 1100000 0000000 0011111111 23478999999996431 1223444333
Q ss_pred CCC--CCcEEEEEeCChhhHHH-h----CCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 315 QFG--PGSRLIITTRDKQVLDD-F----GVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 315 ~~~--~~~~iliTsR~~~~~~~-~----~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
... .+..||.||.....+.. . ..+ ..++++..+.++..++|..++
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD--~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLD--VKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccc--eEEEeCCCCHHHHHHHHHHHh
Confidence 222 23445555554433221 1 122 568999999999999999887
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=3.7e-05 Score=78.66 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=87.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
...+.|+|++|+|||+|++.+++.+........++. ...+...+...+... ....++...+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc--------hHHHHHHHcc
Confidence 357889999999999999999998765433333433 122333333332211 1122333333
Q ss_pred cCccEEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCCh-hhHH----HhC--CCCcceEEeCCCCHHHHHHHH
Q 009845 290 QMKIFIVLDDVNKVR----QLEYLTGGLDQ-FGPGSRLIITTRDK-QVLD----DFG--VLNTNIYEVNGLEYHEALELF 357 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsR~~-~~~~----~~~--~~~~~~~~l~~L~~~ea~~ll 357 (524)
..-+|++||+.... ..+.+...+.. ...+..||+||... ..+. .+. ......+++.+++.++-.+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 45588899984331 12222222111 02355788888553 2111 111 111257899999999999999
Q ss_pred HhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 358 CNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
.+.+-..+. ....+.+.-|+..+.++-
T Consensus 281 ~~k~~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence 987744331 223456666777777664
No 99
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=2.1e-05 Score=77.13 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=61.6
Q ss_pred CccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhh-HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCC
Q 009845 291 MKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTRDKQV-LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYC 367 (524)
Q Consensus 291 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR~~~~-~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~ 367 (524)
++-++|+|+++. ......++..+....+++.+|++|.+... +... ...+..+.+.+++.+++.+.+......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI-~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI-KSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH-HhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 344567899964 44566666655544566777777777633 3221 222378999999999999999876411
Q ss_pred CchHHHHHHHHHHHhCCChHHHHHH
Q 009845 368 LDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 368 ~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
...+.+..++..++|.|+....+
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567788999999755433
No 100
>PRK06620 hypothetical protein; Validated
Probab=98.31 E-value=1.6e-05 Score=73.12 Aligned_cols=137 Identities=14% Similarity=0.029 Sum_probs=81.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQ 290 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~ 290 (524)
+.+.|+|++|+|||+|++.+++.... .++.. . ... . ... +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~---~----~~~----~-----------------------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD---I----FFN----E-----------------------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch---h----hhc----h-----------------------hHH-h
Confidence 67999999999999999987765421 22210 0 000 0 001 1
Q ss_pred CccEEEecCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChhh-------HHHhCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 291 MKIFIVLDDVNKVRQ--LEYLTGGLDQFGPGSRLIITTRDKQV-------LDDFGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 291 ~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iliTsR~~~~-------~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
..-+|++||++...+ +-.+...+. ..|..||+|++.... .+.+.. ..++++++++.++-.+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~--gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKS--VLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhC--CceEeeCCCCHHHHHHHHHHHH
Confidence 235788999964432 222222222 346688998875532 112211 2579999999999888888776
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 362 FKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
.... ....++...-|++++.|.--.+.-+-
T Consensus 161 ~~~~--l~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 161 SISS--VTISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred HHcC--CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 4322 12234667778888877766554433
No 101
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.31 E-value=1.3e-06 Score=73.64 Aligned_cols=91 Identities=22% Similarity=0.439 Sum_probs=48.3
Q ss_pred ccEEEecccCcccccHHHHHHHHHhhC-------CCcE-E---------ecCCcCCCCCcchHHHHHHhhhcceEEEEec
Q 009845 12 YDVFLSFRGEDTRDNFTSRLHAALCRK-------KINT-F---------IDDEELRRGDCISPAIFDAIQGSKISVIILS 74 (524)
Q Consensus 12 ~dvFis~~~~D~~~~~~~~l~~~L~~~-------g~~~-~---------~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 74 (524)
|.|||||++.|.. .....|.+.+... .+.. | -+..+....+.|...|.+.|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999999944 2677777777763 2211 1 1222223345789999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHhHhhCCCeeeeeeee
Q 009845 75 KDYASSKWCLNELVKILECKSMNGQMVVPVFYH 107 (524)
Q Consensus 75 ~~~~~s~~~~~El~~~~~~~~~~~~~v~pv~~~ 107 (524)
++-..|.|+..|+..+++ .+..|+-|.+.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~ 108 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP 108 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence 999999999999998875 34667776433
No 102
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.31 E-value=3e-05 Score=74.78 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=71.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
..+.++|++|+|||++|+.+++.+.... ....|+.. ...++...+ .+... ......+.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v---------~~~~l~~~~---~g~~~-----~~~~~~~~~-- 119 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV---------TRDDLVGQY---IGHTA-----PKTKEILKR-- 119 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe---------cHHHHhHhh---cccch-----HHHHHHHHH--
Confidence 3688999999999999998887654321 11123321 111221111 11110 011111221
Q ss_pred hcCccEEEecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhC------CCCcceEEeCCCCHH
Q 009845 289 QQMKIFIVLDDVNKV-----------RQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFG------VLNTNIYEVNGLEYH 351 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~------~~~~~~~~l~~L~~~ 351 (524)
-.+-+|+||+++.. +....++..+.....+.+||+++.....-.... ..-...+++++++.+
T Consensus 120 -a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 120 -AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred -ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 13468999999632 223445554443344566666665432211110 011267999999999
Q ss_pred HHHHHHHhhhc
Q 009845 352 EALELFCNFAF 362 (524)
Q Consensus 352 ea~~ll~~~~~ 362 (524)
|..+++...+-
T Consensus 199 dl~~I~~~~l~ 209 (284)
T TIGR02880 199 ELLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988773
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.30 E-value=1.3e-05 Score=88.91 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-----c-
Q 009845 165 LVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-----F- 238 (524)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f- 238 (524)
.+++...++...-.. .....++||+.+++++...|.... ..-+.++|++|+|||++|..++.++... .
T Consensus 161 ~l~~~~~~l~~~a~~----~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~ 234 (821)
T CHL00095 161 TLEEFGTNLTKEAID----GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE 234 (821)
T ss_pred HHHHHHHHHHHHHHc----CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 444444444433222 234569999999999999997432 3356799999999999999999876432 1
Q ss_pred cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH---------HHHHH
Q 009845 239 EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR---------QLEYL 309 (524)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~l 309 (524)
...+|..+... +.. +....+.....+...+.+....++++|++|+++..- ....+
T Consensus 235 ~~~i~~l~~~~----------l~a------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 235 DKLVITLDIGL----------LLA------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred CCeEEEeeHHH----------Hhc------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 12333332211 110 000000000012222322233568999999994221 12222
Q ss_pred h-cCCCCCCCCcEEEEEeCChhhHHH-----hCCCCcceEEeCCCCHHHHHHHHHhh
Q 009845 310 T-GGLDQFGPGSRLIITTRDKQVLDD-----FGVLNTNIYEVNGLEYHEALELFCNF 360 (524)
Q Consensus 310 ~-~~~~~~~~~~~iliTsR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~ll~~~ 360 (524)
+ +.+. ....++|.+|.....-.. .-......+.+++.+.++..+++...
T Consensus 299 Lkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 299 LKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2 2222 123455555554433111 00111267889999999988887753
No 104
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=2.3e-05 Score=82.61 Aligned_cols=192 Identities=15% Similarity=0.138 Sum_probs=108.1
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+...+.|.+++..+. -.+.+.++|+.|+|||++|+.+++.+-...+.. ... .+.-.....
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~------~~p----C~~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD------GEP----CNECEICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCC----CCccHHHHH
Confidence 455789999999999999997543 356788999999999999999988643211000 000 000011111
Q ss_pred HHHhhcccccccCC--CCchH---HHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CChh
Q 009845 264 VLSEVLDENIKIRT--PDLPK---YMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITT-RDKQ 330 (524)
Q Consensus 264 l~~~l~~~~~~~~~--~~~~~---~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTs-R~~~ 330 (524)
+...........+. ..... .+.... .++.-++|+|+++.. .....|+..+........+|++| ....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 11110000000000 01111 122221 234568899999754 44666665554333444445444 3333
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
+.... ...+..+++.+++.++..+.+...+...+.. ...+.+..|++.++|.+.-+
T Consensus 162 i~~tI-~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 162 IPATI-LSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CcHHH-HhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 32221 1123678999999999999998877443322 22356778888898887543
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.29 E-value=5.3e-06 Score=77.32 Aligned_cols=182 Identities=18% Similarity=0.206 Sum_probs=110.6
Q ss_pred CCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc--cccceEEEEeeccccccCcChHHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW--EFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
|...+.++|-+..++.|.+.+.. ...+....+||+|.|||+-|..+++.+-. -|+.++.-.+.... .++.-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde----rGisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE----RGISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc----ccccch
Confidence 34567899999999999998874 45778999999999999999999987543 24544433222221 122111
Q ss_pred HHHHHHhhcccccccCCCCchHHHHHHH---h---cCc-cEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 261 REQVLSEVLDENIKIRTPDLPKYMRERL---Q---QMK-IFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l---~---~~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
...+ .. ...+.-.. . .++ -++|||+++.. +.|..+...+..+....+.|+.+..-..
T Consensus 106 r~Ki-k~-------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 106 REKI-KN-------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred hhhh-cC-------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 1000 00 00000000 0 123 48899999765 4566776666655555665444433321
Q ss_pred HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 332 LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
....-......+..++|..++..+-+...+-..+.. -..+..+.|++.++|--
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDL 224 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcH
Confidence 111111223678999999999999999888555433 23467788999998864
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.8e-05 Score=83.84 Aligned_cols=195 Identities=14% Similarity=0.164 Sum_probs=107.7
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+-...... ... .+.-.....
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~--~~~--------c~~c~~c~~ 81 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT--AEP--------CNVCPPCVE 81 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC--CCC--------CCccHHHHH
Confidence 445789999999999999987432 256778999999999999999988653211000 000 000001111
Q ss_pred HHHhhccccccc--CCC---CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-hh
Q 009845 264 VLSEVLDENIKI--RTP---DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRD-KQ 330 (524)
Q Consensus 264 l~~~l~~~~~~~--~~~---~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~-~~ 330 (524)
+...-....... ... +-+..+...+ .++.-++|+|+++.. .....|+..+....+...+|++|.+ ..
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 100000000000 000 0111122211 234458999999654 3455565555433455666655544 33
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHH
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP-LALRVL 392 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 392 (524)
+.... ...+..+++.+++.++....+...+...+.. ...+.+..|++.++|.. .++..+
T Consensus 162 l~~tI-~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 162 VPITI-LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhHHH-HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33221 1123678999999999998888766433321 23466788899999976 444444
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=1.3e-05 Score=85.42 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=40.3
Q ss_pred CCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
|...+.++|++..+..+...+... ....+.|+|++|+||||||+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 345567999999999988777532 34579999999999999999987754
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.25 E-value=2.4e-05 Score=78.73 Aligned_cols=175 Identities=21% Similarity=0.248 Sum_probs=98.5
Q ss_pred CCCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK 253 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 253 (524)
.-..+.|.+...++|...+.. +-...+.+.++|++|+|||+||+.+++.....|- .+. .
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~------ 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-G------ 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h------
Confidence 345688999888888876531 1134678999999999999999999987643321 111 0
Q ss_pred CcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 009845 254 GGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF- 316 (524)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 316 (524)
..+..... +.. ...+...+.......+.+|+||+++... .+..++..+...
T Consensus 213 ----s~l~~k~~---ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ----SEFVQKYL---GEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ----HHHHHHhc---chh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 01111110 000 0012222333345678999999985421 122333333221
Q ss_pred -CCCcEEEEEeCChhhHHH-h----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 -GPGSRLIITTRDKQVLDD-F----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~~-~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||+||.....+.. . ..+ ..++++..+.++-.++|............ -....+++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd--~~I~~~~P~~~~R~~Il~~~~~~~~l~~d---vd~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLD--RKIEFPLPDRRQKRLIFQTITSKMNLSEE---VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCccc--EEEEeCCcCHHHHHHHHHHHHhcCCCCcc---cCHHHHHHHcCCCC
Confidence 235567777776543321 1 122 56899999999988888876643221111 12456677776664
No 109
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=3.3e-05 Score=73.09 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=113.5
Q ss_pred CCccccch---hhhhHHHhhccCC-CCceEEEEeccCcchhhHHHHHHhhhhcccccce-----EEEEeeccccccCcCh
Q 009845 187 NGFVGLNS---RIEEIKSLLCIGL-PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGK-----CFMANVREESEKGGGL 257 (524)
Q Consensus 187 ~~~vGR~~---~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~~~~~~~~~~~~~~ 257 (524)
+.+||-.. .++.|.+++..+. ...+.+.|+|.+|+|||++++++...+...++.. +++. ..+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCCh
Confidence 45666543 3455566666442 3367899999999999999999998654443221 2222 23333788
Q ss_pred HHHHHHHHHhhcccccccCCC-CchHHHHHHHhcC-ccEEEecCCCCH-----HHHHHHhcCCCCCCC---CcEEEEEeC
Q 009845 258 VHLREQVLSEVLDENIKIRTP-DLPKYMRERLQQM-KIFIVLDDVNKV-----RQLEYLTGGLDQFGP---GSRLIITTR 327 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~l~~~-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~---~~~iliTsR 327 (524)
..++..++.+++......... .......+.++.- .-+||+|++.+. ..-..++..+...++ -+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 899999999988776544443 4444455666653 449999999553 122222222221122 233444444
Q ss_pred ChhhHHHhC---CCCcceEEeCCCCHH-HHHHHHHhhh---cCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 328 DKQVLDDFG---VLNTNIYEVNGLEYH-EALELFCNFA---FKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 328 ~~~~~~~~~---~~~~~~~~l~~L~~~-ea~~ll~~~~---~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
+..-+-... ......+.++....+ +...|+.... .-.....-...+++..|...++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 331110000 011255677776543 4444543322 1111222344678999999999997665443
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.24 E-value=2.5e-05 Score=86.50 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 165 LVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.+++-..++..+..+ ...+.++||+.++.++...|.... ..-+.++|++|+|||+||..++.++..
T Consensus 160 ~l~~~~~~l~~~~r~----~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQ----GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhc----CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 344444444444333 445679999999999999887432 345679999999999999999998654
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.24 E-value=2.3e-05 Score=87.17 Aligned_cols=156 Identities=11% Similarity=0.070 Sum_probs=86.3
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc------cceEEEEeeccccccCcCh
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF------EGKCFMANVREESEKGGGL 257 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 257 (524)
...+.++||+.++.++...|.... ..-+.++|++|+|||+||..++.++...+ ...+|..++..
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~-------- 239 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA-------- 239 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH--------
Confidence 345679999999999999887532 34566899999999999999998865431 12233322111
Q ss_pred HHHHHHHHHhhcccccccCCC-CchHHHHHHHh-cCccEEEecCCCCHH---------HHHHHhcCCCCCCCCcEEEEEe
Q 009845 258 VHLREQVLSEVLDENIKIRTP-DLPKYMRERLQ-QMKIFIVLDDVNKVR---------QLEYLTGGLDQFGPGSRLIITT 326 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~iliTs 326 (524)
+... ... ..... .+...+....+ +++.+|++|+++... +...++..... ....++|-+|
T Consensus 240 --l~a~------~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaT 309 (852)
T TIGR03346 240 --LIAG------AKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGAT 309 (852)
T ss_pred --Hhhc------chh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeC
Confidence 1000 000 00000 12222222222 468999999996432 12222222221 1223445444
Q ss_pred CChhhHH-------HhCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 327 RDKQVLD-------DFGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 327 R~~~~~~-------~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
.....-. ..... ..+.++..+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRF--QPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHHH
Confidence 4433211 01122 568899999999999887653
No 112
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.24 E-value=0.00038 Score=68.96 Aligned_cols=195 Identities=14% Similarity=0.097 Sum_probs=113.2
Q ss_pred cchhhhhHHHhhccCCCCceEEEEeccCcchhhHHH-HHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcc
Q 009845 192 LNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLA-GAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLD 270 (524)
Q Consensus 192 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 270 (524)
|.+.+++|..||.... ...|+|.||.|+||+.|+ .++.+.-. ...++ ++...... .+-..+...+++++|-
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~----~vL~I-DC~~i~~a-r~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRK----NVLVI-DCDQIVKA-RGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCC----CEEEE-EChHhhhc-cChHHHHHHHHHhcCC
Confidence 5677899999998543 459999999999999999 55554321 12222 23332221 2333333333333221
Q ss_pred c-----------------------ccccCCC---CchHHH-------HH-------------------HHh---cCccEE
Q 009845 271 E-----------------------NIKIRTP---DLPKYM-------RE-------------------RLQ---QMKIFI 295 (524)
Q Consensus 271 ~-----------------------~~~~~~~---~~~~~l-------~~-------------------~l~---~~~~Ll 295 (524)
. ..+.... ++...+ ++ +|. .++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 0 0010010 111111 11 001 125689
Q ss_pred EecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHH----HhCCCCcceEEeCCCCHHHHHHHHHhh
Q 009845 296 VLDDVNKV-----------RQLEYLTGGLDQFGPGSRLIITTRDKQVLD----DFGVLNTNIYEVNGLEYHEALELFCNF 360 (524)
Q Consensus 296 VlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTsR~~~~~~----~~~~~~~~~~~l~~L~~~ea~~ll~~~ 360 (524)
||||+... .+|...+.. .+-.+||++|-+..... .+.......+.|...+.+.|.++...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99999221 223332222 34568998887764432 222222377899999999999999998
Q ss_pred hcCCCCC------------------CchHHHHHHHHHHHhCCChHHHHHHHHHhcC
Q 009845 361 AFKHDYC------------------LDDLLVLLEHVVKYANGNPLALRVLGSFLHQ 398 (524)
Q Consensus 361 ~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 398 (524)
+...... ...........+..+||-=.=|+.+++.++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 8543110 0134455677889999999999999999875
No 113
>CHL00176 ftsH cell division protein; Validated
Probab=98.20 E-value=3.5e-05 Score=82.02 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=99.6
Q ss_pred CCCccccchhhhhHHHhhc---cC-------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 186 FNGFVGLNSRIEEIKSLLC---IG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
...++|.+...+++...+. .. ....+-+.++|++|+|||+||+.++...... |+. +
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-i-------- 247 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-I-------- 247 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-c--------
Confidence 3567788777776665542 11 1224579999999999999999998865322 221 0
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC--C
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF--G 317 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 317 (524)
...++..... +. ........+.......+.+|+|||++... .+..++..+..+ .
T Consensus 248 s~s~f~~~~~---g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 248 SGSEFVEMFV---GV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred cHHHHHHHhh---hh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0011111110 00 00112334445556788999999996431 133344333222 2
Q ss_pred CCcEEEEEeCChhhHHH-h----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC-ChHHHH
Q 009845 318 PGSRLIITTRDKQVLDD-F----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG-NPLALR 390 (524)
Q Consensus 318 ~~~~iliTsR~~~~~~~-~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~ 390 (524)
.+..||.||.....+.. + ..+ ..+.++..+.++-.+++..++..... ........+++.+.| .+--|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd--~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFD--RQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCc--eEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCCHHHHH
Confidence 34456666655433221 1 122 67899999999999999888744221 112345677888877 343333
No 114
>CHL00181 cbbX CbbX; Provisional
Probab=98.19 E-value=0.0001 Score=71.04 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=73.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc-c-cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE-F-EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
...+.++|++|+|||++|+.+++..... + ...-|+. ....++...+. +... ......+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~---------v~~~~l~~~~~---g~~~-----~~~~~~l~~- 120 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT---------VTRDDLVGQYI---GHTA-----PKTKEVLKK- 120 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE---------ecHHHHHHHHh---ccch-----HHHHHHHHH-
Confidence 3458899999999999999998864321 1 1111222 11112222211 1100 001111221
Q ss_pred HhcCccEEEecCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHHH------hCCCCcceEEeCCCCH
Q 009845 288 LQQMKIFIVLDDVNKV-----------RQLEYLTGGLDQFGPGSRLIITTRDKQVLDD------FGVLNTNIYEVNGLEY 350 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~------~~~~~~~~~~l~~L~~ 350 (524)
...-+|+||+++.. +....+...+........||+++....+... ........+.+++++.
T Consensus 121 --a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 --AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred --ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 23469999999642 3344555544443455667777654332111 1111126799999999
Q ss_pred HHHHHHHHhhhcC
Q 009845 351 HEALELFCNFAFK 363 (524)
Q Consensus 351 ~ea~~ll~~~~~~ 363 (524)
+|..+++...+-.
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887743
No 115
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=7e-05 Score=73.06 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=108.0
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc---------------ccceEEEEeecccc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE---------------FEGKCFMANVREES 251 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~ 251 (524)
..++|.+...+.|...+..+. -.+...++|+.|+||+++|..+++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468999999999999987542 25789999999999999999998864321 22233332110000
Q ss_pred ccCcChHHHHHHHHHhhcccccccCCC--CchHHHHHHHh-----cCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEE
Q 009845 252 EKGGGLVHLREQVLSEVLDENIKIRTP--DLPKYMRERLQ-----QMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRL 322 (524)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~i 322 (524)
. .... ...+...+......... +.+..+.+.+. +++-++|+|+++.. .....++..+...+ .+.+
T Consensus 83 g--~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 G--KLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred c--cccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0 0000 00000111000000000 12233333333 45668999999644 34455555544334 4455
Q ss_pred EEEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 323 IITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 323 liTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
|++|.+. .++... ...+..+++.+++.++..+.+.+...... . ......++..++|.|.....+
T Consensus 157 ILi~~~~~~Ll~TI-~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~---~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTI-VSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L---NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHH-HhhceEEecCCCCHHHHHHHHHHhhcccc--c---hhHHHHHHHHcCCCHHHHHHH
Confidence 5555444 333332 22248899999999999999998752111 1 111357889999999766443
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.14 E-value=0.00013 Score=67.07 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=41.8
Q ss_pred CCCCCCccccchhhhhHHHhh---ccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 183 SSDFNGFVGLNSRIEEIKSLL---CIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+.....++|.+.+.+.|.+-. ..+. ...-+.+||..|+|||+|++.+.+.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345578999999999987633 2232 35568889999999999999999887665
No 117
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.12 E-value=4.4e-05 Score=79.95 Aligned_cols=180 Identities=22% Similarity=0.215 Sum_probs=97.2
Q ss_pred CCCccccchhhhhHHHhhc---c-------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 186 FNGFVGLNSRIEEIKSLLC---I-------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
...++|.+...+++..++. . +....+-+.++|++|+|||+||+.++...... |+. +
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~-i-------- 119 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFS-I-------- 119 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----eee-c--------
Confidence 3567787777666655432 1 12234569999999999999999998865322 121 0
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC--C
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF--G 317 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 317 (524)
....+..... +. ....+...+.......+.+|+||+++... .+..++..+..+ .
T Consensus 120 ~~~~~~~~~~---g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 120 SGSDFVEMFV---GV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred cHHHHHHHHh---cc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 0111111110 00 00012333444445678999999995431 122333333221 2
Q ss_pred CCcEEEEEeCChhhHH-Hh----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHH
Q 009845 318 PGSRLIITTRDKQVLD-DF----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN-PLALRV 391 (524)
Q Consensus 318 ~~~~iliTsR~~~~~~-~~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~ 391 (524)
.+..||.||.....+. .. ..+ ..+.++..+.++-.+++...+....... ......+++.+.|. +--|..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd--~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFD--RQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcce--EEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHH
Confidence 2344555665543221 11 122 6789999999999999988774332221 12345788888774 444444
Q ss_pred H
Q 009845 392 L 392 (524)
Q Consensus 392 ~ 392 (524)
+
T Consensus 267 l 267 (495)
T TIGR01241 267 L 267 (495)
T ss_pred H
Confidence 3
No 118
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.11 E-value=2.3e-05 Score=79.38 Aligned_cols=176 Identities=23% Similarity=0.247 Sum_probs=98.0
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
-..+.|.+.++++|...+.. +-...+.+.++|++|+|||+||+.+++.....| +.+. ..
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~-~s------ 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF---LRVV-GS------ 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEe-cc------
Confidence 35678999999999887642 112356788999999999999999999865443 1111 00
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC--
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF-- 316 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 316 (524)
.+..... +.. .......+.....+.+.+|+||+++... .+..++..+..+
T Consensus 252 ----eL~~k~~---Ge~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ----ELIQKYL---GDG-----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ----hhhhhhc---chH-----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1111110 000 0001222223334678899999984321 112222222211
Q ss_pred CCCcEEEEEeCChhhHHHhCC---CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 GPGSRLIITTRDKQVLDDFGV---LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 ~~~~~iliTsR~~~~~~~~~~---~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||+||.....+...-. .-...++++..+.++..++|..+...-..... -....++..+.|+-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 235677878776544432111 11257899999999999999977643221111 12345566666553
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.07 E-value=4.1e-05 Score=82.98 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=39.6
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+.++||+.+++++...|.... ..-+.++|++|+|||+||+.+++.+.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3569999999999999887532 23457899999999999999998653
No 120
>PRK08116 hypothetical protein; Validated
Probab=98.06 E-value=2.1e-05 Score=74.99 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=56.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
...+.|+|++|+|||.||..+++.+..+....+|+. ..+++..+........ ......+.+.+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~ 177 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLV 177 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhc
Confidence 346899999999999999999998766533333443 2334444433322111 111222334444
Q ss_pred cCccEEEecCCC--CHH--HHHHHhcCCCC-CCCCcEEEEEeCCh
Q 009845 290 QMKIFIVLDDVN--KVR--QLEYLTGGLDQ-FGPGSRLIITTRDK 329 (524)
Q Consensus 290 ~~~~LlVlDdv~--~~~--~~~~l~~~~~~-~~~~~~iliTsR~~ 329 (524)
+-. ||||||+. ... ....+...+.. ...+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999992 211 12223222211 13456788888754
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.06 E-value=6.3e-05 Score=72.35 Aligned_cols=199 Identities=22% Similarity=0.222 Sum_probs=115.3
Q ss_pred CCCccccchhhhhHHHhhccCCCC-ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHH
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPD-FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQV 264 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 264 (524)
.+.+.+|+.++..|..++...+.. +..|.|+|-+|.|||.+.+++.+.... ..+|+..+.. .....+...+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ec-----ft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVEC-----FTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHh-----ccHHHHHHHH
Confidence 457889999999999999755443 445699999999999999999987622 3467663322 5667788888
Q ss_pred HHhhcccccccCCC--------CchHHHHH--HHh--cCccEEEecCCCCHHHHHH-----Hh---cCCCCCCCCcEEEE
Q 009845 265 LSEVLDENIKIRTP--------DLPKYMRE--RLQ--QMKIFIVLDDVNKVRQLEY-----LT---GGLDQFGPGSRLII 324 (524)
Q Consensus 265 ~~~l~~~~~~~~~~--------~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~-----l~---~~~~~~~~~~~ili 324 (524)
+...+..+...... .....+.+ ... ++.++|||||++...+.+. ++ ..++ .+.. +|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEE
Confidence 88764211111111 11222222 122 3589999999976654322 11 1111 2333 333
Q ss_pred EeCCh---hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCC--CchHHH-HHHHHHHHhCCChHHHHHHHHHh
Q 009845 325 TTRDK---QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYC--LDDLLV-LLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 325 TsR~~---~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~--~~~~~~-~~~~i~~~~~G~PLal~~~~~~l 396 (524)
++-.. .....++.....++..+..+.+|..+++.+.-.+.... -..+-. +..-....|+ -+-.+..+.+..
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 33322 12222344444678889999999999988755221110 011111 2344556676 555555554443
No 122
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.04 E-value=2.8e-05 Score=65.68 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEeccCcchhhHHHHHHhhhhc
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 123
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.04 E-value=5.5e-06 Score=77.69 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=58.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc-cccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC-------Cc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW-EFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP-------DL 280 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-------~~ 280 (524)
....++|.|++|+|||||++.+++.... +|+..+|+..+.+.. .+..++++.+...+-....+.+.. ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~---~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP---EEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC---ccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3568999999999999999999997654 577777877554422 467788888733321111111111 11
Q ss_pred hHHHHHH-HhcCccEEEecCCCCH
Q 009845 281 PKYMRER-LQQMKIFIVLDDVNKV 303 (524)
Q Consensus 281 ~~~l~~~-l~~~~~LlVlDdv~~~ 303 (524)
....... ..+++++|++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 1112211 2478999999999543
No 124
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.00017 Score=71.61 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=81.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
....+.|+|+.|.|||.|++++++......+...++. .........++..+... ....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~--------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN--------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh--------hHHHHHHhh
Confidence 3678999999999999999999998887776544443 12233333333332221 223344444
Q ss_pred hcCccEEEecCCCCH----HHHHHHhcCCCCC-CCCcEEEEEeCChhh---------HHHhCCCCcceEEeCCCCHHHHH
Q 009845 289 QQMKIFIVLDDVNKV----RQLEYLTGGLDQF-GPGSRLIITTRDKQV---------LDDFGVLNTNIYEVNGLEYHEAL 354 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~----~~~~~l~~~~~~~-~~~~~iliTsR~~~~---------~~~~~~~~~~~~~l~~L~~~ea~ 354 (524)
.--++++||++-. ..-+.+...+... ..|..||+|++.... .+.+.. .-++++.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~--Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW--GLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc--eeEEeeCCCCHHHHH
Confidence 3448899999432 1123333222211 244589999865522 122222 267999999999999
Q ss_pred HHHHhhhc
Q 009845 355 ELFCNFAF 362 (524)
Q Consensus 355 ~ll~~~~~ 362 (524)
.++.+.+-
T Consensus 251 aiL~kka~ 258 (408)
T COG0593 251 AILRKKAE 258 (408)
T ss_pred HHHHHHHH
Confidence 99998663
No 125
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.0002 Score=69.66 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=61.7
Q ss_pred cCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCC
Q 009845 290 QMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDY 366 (524)
Q Consensus 290 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~ 366 (524)
++.-++|||+++.. .....++..+....+++.+|++|.+. .++... ...+..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI-rSRCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI-RSRCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH-HhhheEeeCCCcCHHHHHHHHHHcC----C
Confidence 34568999999654 34555665555445677777776654 333322 2223789999999999999997642 1
Q ss_pred CCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 367 CLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 367 ~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
. ...+..++..++|.|+....+
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 133667899999999866443
No 126
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.01 E-value=8.7e-06 Score=70.72 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=56.7
Q ss_pred cEEEecccCccc-ccHHHHHHHHHhhC-CCcEEecCCcCCC--CCcchHHHHHHhhhcceEEEEeccCc
Q 009845 13 DVFLSFRGEDTR-DNFTSRLHAALCRK-KINTFIDDEELRR--GDCISPAIFDAIQGSKISVIILSKDY 77 (524)
Q Consensus 13 dvFis~~~~D~~-~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~~ 77 (524)
-|||||++.... ...|..|+..|++. |+.|.+|.++... +..+..++.+.++++..+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 499999995532 35799999999999 9999999999854 77899999999999999999999654
No 127
>PRK08181 transposase; Validated
Probab=97.98 E-value=3e-05 Score=73.54 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=54.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQ 290 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~ 290 (524)
.-+.|+|++|+|||.||..+++........+.|+. ..++...+...... ......+ +.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~~-------~~~~~~l-~~l~- 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARRE-------LQLESAI-AKLD- 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHhC-------CcHHHHH-HHHh-
Confidence 45999999999999999999987665433344443 23444444322110 1111222 2222
Q ss_pred CccEEEecCCCC----HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 291 MKIFIVLDDVNK----VRQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 291 ~~~LlVlDdv~~----~~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
+.-||||||+.. ......+...+.....+..+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 355999999932 222222332222111234688888765
No 128
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.96 E-value=1.4e-05 Score=78.37 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=59.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc-cccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC---C----c
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW-EFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP---D----L 280 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~---~----~ 280 (524)
..+..+|.|++|+||||||+++++.+.. +|+..+|+..+.+.. ..+.++++.+...+-....+.+.. . .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4567889999999999999999997665 588888988666532 357777777764322222111111 1 1
Q ss_pred hHHHHHH-HhcCccEEEecCCCCH
Q 009845 281 PKYMRER-LQQMKIFIVLDDVNKV 303 (524)
Q Consensus 281 ~~~l~~~-l~~~~~LlVlDdv~~~ 303 (524)
.+..... ..++++||++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111111 2578999999999533
No 129
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=4.7e-05 Score=80.45 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=43.3
Q ss_pred CCCCCCccccchhhhhHHHhhccCC---CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIGL---PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
|.....++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455789999999999999986432 3357899999999999999999998654
No 130
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=5e-05 Score=72.51 Aligned_cols=171 Identities=24% Similarity=0.303 Sum_probs=96.9
Q ss_pred CccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcC
Q 009845 188 GFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGG 256 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 256 (524)
..=|.+.++++|++.... +-..++-|.++||||.|||-||++++++.... |+-.++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg-------- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG-------- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc--------
Confidence 344677777777765532 22346789999999999999999999986543 333111
Q ss_pred hHHHHHHHHHhhcccccccCCCCchHHHHHHH-hcCccEEEecCCCCHH----------------HHHHHhcCCCCCCC-
Q 009845 257 LVHLREQVLSEVLDENIKIRTPDLPKYMRERL-QQMKIFIVLDDVNKVR----------------QLEYLTGGLDQFGP- 318 (524)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~- 318 (524)
.++.+..+.+ ...+...+.+.. .+.+.+|++|.++... .+-.|+..+..|.+
T Consensus 219 -SElVqKYiGE---------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 -SELVQKYIGE---------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred -HHHHHHHhcc---------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1233332211 011333333333 3578999999995431 13345555555443
Q ss_pred -CcEEEEEeCChhhHHH-----hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 319 -GSRLIITTRDKQVLDD-----FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 319 -~~~iliTsR~~~~~~~-----~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+||..|...+++.- -..+ ..++++.-+.+.-.++|.-+...=....+. -.+.+++.|.|.-
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~D--RkIEfplPd~~gR~~Il~IHtrkM~l~~dv---d~e~la~~~~g~s 357 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFD--RKIEFPLPDEEGRAEILKIHTRKMNLADDV---DLELLARLTEGFS 357 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCccc--ceeecCCCCHHHHHHHHHHHhhhccCccCc---CHHHHHHhcCCCc
Confidence 4578877766554322 1223 568888556666666676665322211111 1455677777764
No 131
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.91 E-value=0.00034 Score=68.00 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=82.0
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC-cChHHHHHHHHHhhcccccccCCCCchHHHHH
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG-GGLVHLREQVLSEVLDENIKIRTPDLPKYMRE 286 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~ 286 (524)
..++.++|||++|+|||.+|+.++......| +..+..+..... -......++++.. ..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~----------------A~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYRE----------------AAD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHH----------------HHH
Confidence 3478999999999999999999999875442 222222211110 1112222222211 111
Q ss_pred H--HhcCccEEEecCCCCHH------------HH--HHHhcCCC--------------CCCCCcEEEEEeCChhhHHH-h
Q 009845 287 R--LQQMKIFIVLDDVNKVR------------QL--EYLTGGLD--------------QFGPGSRLIITTRDKQVLDD-F 335 (524)
Q Consensus 287 ~--l~~~~~LlVlDdv~~~~------------~~--~~l~~~~~--------------~~~~~~~iliTsR~~~~~~~-~ 335 (524)
. -++++++|+||+++... +. ..|+..+. ...++..||.||.+...+.. +
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 1 14679999999985211 11 23332211 11345667888876654321 1
Q ss_pred CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 009845 336 GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL 387 (524)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 387 (524)
...+-.-..+..-+.++-.+++..+....+.+ .....+|++...|-|+
T Consensus 286 lRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKFYWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCceeCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 11100111233445666677777665443322 2456678888888776
No 132
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.90 E-value=0.00021 Score=66.77 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=27.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
...+.++|.+|+|||+||..+++.+......++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789999999999999999999876554444444
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.90 E-value=0.00014 Score=79.88 Aligned_cols=176 Identities=20% Similarity=0.209 Sum_probs=93.8
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
...+.|.+..++++.+++.. +-...+.+.|+|++|+|||+||+.+++.....| +..+.......
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~i~~~- 251 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPEIMSK- 251 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHHHhcc-
Confidence 34588999999998877632 112356789999999999999999998764332 11111110000
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-------------HHHHHHhcCCCCCC-CCc
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------------RQLEYLTGGLDQFG-PGS 320 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~-~~~ 320 (524)
. .+ .....+...+.......+.+|+||+++.. .....++..+.... .+.
T Consensus 252 ---------~---~g-----~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 252 ---------Y---YG-----ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ---------c---cc-----HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 0 00 00001222333334556789999998542 11233333332222 233
Q ss_pred EEEE-EeCChhhH-HHhCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 321 RLII-TTRDKQVL-DDFGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 321 ~ili-TsR~~~~~-~~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
.++| ||.....+ ..... .-...+.++..+.++-.+++........... ......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 3444 44433211 11111 0015678888899988888886553221111 123566777787764
No 134
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.89 E-value=3.5e-05 Score=76.03 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=60.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC---CchH--
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP---DLPK-- 282 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~---~~~~-- 282 (524)
....++|+|++|+|||||++.+++.+..+ |+..+|+..+.+.. ..+.++++.+...+-....+.+.. .+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~---~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC---ccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45789999999999999999999987665 77788887554322 467888888855432222221111 1111
Q ss_pred --HHHHH-HhcCccEEEecCCCCH
Q 009845 283 --YMRER-LQQMKIFIVLDDVNKV 303 (524)
Q Consensus 283 --~l~~~-l~~~~~LlVlDdv~~~ 303 (524)
..... ..+++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 11111 3578999999999544
No 135
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00036 Score=67.99 Aligned_cols=174 Identities=13% Similarity=0.144 Sum_probs=94.9
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccc----c
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDE----N 272 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~ 272 (524)
+.|.+.+..+. -.....++|+.|+||+++|..++..+-..-+... .. .+.-...+.+...-..+ .
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~------~~----Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 12 QQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD------QP----CGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC------CC----CCCCHHHHHHhcCCCCCEEEEc
Confidence 44555554322 2568889999999999999999886432211000 00 00001111111110000 0
Q ss_pred c-ccCCC--CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCCcc
Q 009845 273 I-KIRTP--DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLNTN 341 (524)
Q Consensus 273 ~-~~~~~--~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~~~ 341 (524)
+ ..... +.+..+.+.+ .++.-++|+|+++.. .....++..+....++..+|++|.+. .++... ...+.
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI-~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI-YSRCQ 159 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH-Hhhce
Confidence 0 00000 1222222222 244558889999654 45566666665545667777777665 333322 22237
Q ss_pred eEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 342 IYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 342 ~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
.+.+.+++.+++.+.+...... . ...+..++..++|.|+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSA----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhcc----C---hHHHHHHHHHcCCCHHHH
Confidence 8999999999999999876411 1 123566788899999633
No 136
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.87 E-value=0.00015 Score=74.83 Aligned_cols=175 Identities=18% Similarity=0.116 Sum_probs=92.3
Q ss_pred CCccccchhhhhHHHhh---c-----cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChH
Q 009845 187 NGFVGLNSRIEEIKSLL---C-----IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLV 258 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L---~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 258 (524)
..+-|.+...+.+.... . .+-...+-|.++|++|+|||.+|+.+++..... .+..+....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~l-------- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGKL-------- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHHh--------
Confidence 45677766555554321 1 122336789999999999999999999875432 222211110
Q ss_pred HHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--------------HHHHHhcCCCCCCCCcEEEE
Q 009845 259 HLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--------------QLEYLTGGLDQFGPGSRLII 324 (524)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~~~~ili 324 (524)
.... .+.. ...+...+...-...+++|+||+++..- .+..++..+.....+.-||.
T Consensus 296 --~~~~---vGes-----e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 --FGGI---VGES-----ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred --cccc---cChH-----HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0000 0000 0012222332334579999999996321 11222222222223344566
Q ss_pred EeCChhhHHH-h----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 325 TTRDKQVLDD-F----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 325 TsR~~~~~~~-~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
||.+...+.. + ..+ ..+.++..+.++-.++|..++.+..... ........+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD--~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFD--EIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCC--eEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 7765533221 1 223 5788988899999999988874432111 01123456777777664
No 137
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00037 Score=68.81 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=86.0
Q ss_pred ccc-cchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 189 FVG-LNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 189 ~vG-R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
++| -+..++.|...+..+. -.....++|+.|+|||++|..+++.+-...+...-- .+.-...+.+...
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~----------cg~C~~c~~~~~~ 75 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP----------CGTCTNCKRIDSG 75 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----------CCcCHHHHHHhcC
Confidence 556 6667777877776332 356789999999999999999988643211000000 0000001111000
Q ss_pred hccc----ccccCCC--CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHH
Q 009845 268 VLDE----NIKIRTP--DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ-VLD 333 (524)
Q Consensus 268 l~~~----~~~~~~~--~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~ 333 (524)
...+ ....... +.+..+.+.+ .+.+-++|+|+++.. +....|+..+....+++.+|++|.+.. +..
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 0000 0000000 1111122221 234558999999644 345566666655456777777776653 222
Q ss_pred HhCCCCcceEEeCCCCHHHHHHHHHhh
Q 009845 334 DFGVLNTNIYEVNGLEYHEALELFCNF 360 (524)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~ea~~ll~~~ 360 (524)
.. ...+..+++.+++.++..+.+...
T Consensus 156 TI-rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TI-LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HH-HhhceeeeCCCCCHHHHHHHHHHc
Confidence 21 222378999999999998888754
No 138
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=5.6e-05 Score=71.80 Aligned_cols=28 Identities=29% Similarity=0.168 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+.|+|++|+|||+||..++......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3468899999999999999998775443
No 139
>PRK12377 putative replication protein; Provisional
Probab=97.84 E-value=7.2e-05 Score=70.11 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=28.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...+.++|++|+|||+||..+++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999998776544444443
No 140
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00064 Score=66.95 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=94.6
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccc----
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDE---- 271 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~---- 271 (524)
-++|.+.+..+ .-...+.++|+.|+||+++|..++..+-..-+..- ..+ +.-...+.+......+
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~--~~C--------g~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH--KSC--------GHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCC--------CCCHHHHHHHcCCCCCEEEE
Confidence 34455555432 23668889999999999999999886432110000 000 0000111111000000
Q ss_pred ccccC-C-C--CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCC
Q 009845 272 NIKIR-T-P--DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLN 339 (524)
Q Consensus 272 ~~~~~-~-~--~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~ 339 (524)
.+... . . +.+..+.+.+ .++.-++|+|+++.. .....|+..+....++..+|++|.+. .++... ...
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI-rSR 158 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL-RSR 158 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH-Hhc
Confidence 00000 0 0 1222222322 245568999999654 45566666665545666666666654 344332 122
Q ss_pred cceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 340 TNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 340 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
+..+.+.+++.+++.+.+....+ . + .+.+..++..++|.|...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~---~-~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT---M-S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC---C-C---HHHHHHHHHHcCCCHHHH
Confidence 37799999999999998876431 1 1 234667889999999643
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.82 E-value=0.00016 Score=79.59 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=98.0
Q ss_pred CCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 187 NGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
..+.|.+...++|...+.. +-...+-+.++|++|+|||+||+.+++.....| +....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~-------- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG-------- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh--------
Confidence 4567888887777765531 112345689999999999999999999765432 11111
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--------------HHHHHHhcCCCCC--CCC
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--------------RQLEYLTGGLDQF--GPG 319 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~~ 319 (524)
.++.... .+.. ...+...+...-...+.+|+||+++.. ..+..++..+... ..+
T Consensus 521 --~~l~~~~---vGes-----e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 --PEILSKW---VGES-----EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred --HHHhhcc---cCcH-----HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1111110 0000 001222233333567899999999533 1223344433321 233
Q ss_pred cEEEEEeCChhhHHH-hCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHH
Q 009845 320 SRLIITTRDKQVLDD-FGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP-LALRVL 392 (524)
Q Consensus 320 ~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 392 (524)
.-||.||.....+.. .-. .-...+.++..+.++-.++|..+..+...... .....+++.|.|.- -.|..+
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCCHHHHHHH
Confidence 445556655543321 111 11267889999999999998776533221111 12456777787764 334443
No 142
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.82 E-value=0.00038 Score=70.40 Aligned_cols=149 Identities=22% Similarity=0.161 Sum_probs=87.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcC
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQM 291 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~ 291 (524)
++.|.||-++|||||++.+....... .+++......... ..+.+.... +...-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~--------------------~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRA--------------------YIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHH--------------------HHHhhccC
Confidence 99999999999999997777665544 4444422211111 111111111 11111116
Q ss_pred ccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHh----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCC
Q 009845 292 KIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDF----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYC 367 (524)
Q Consensus 292 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~ 367 (524)
+.+++||.|.....|...+..+...++. +|++|+-+....... -......+++-||+..|-..+-.... .
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~-----~ 168 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI-----E 168 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----c
Confidence 7899999999999988887776654555 788888776543221 11123789999999998776543100 0
Q ss_pred CchHHHHHHHHHHHhCCChHHHHH
Q 009845 368 LDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 368 ~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
.... +..-+-.-.+||.|.++..
T Consensus 169 ~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 PSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred hhHH-HHHHHHHHHhCCCcHHHhC
Confidence 0011 1122234457899988754
No 143
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.0001 Score=75.43 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=111.6
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc-cceEEEEeeccccccCcChHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF-EGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.....++|-+.....|.+.+..+. -......+|+-|+||||+|+-++..+-..- ...- - .+--...+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e---P--------C~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE---P--------CGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC---c--------chhhhhhH
Confidence 344678999999999999987432 255678999999999999999988542211 0000 0 00111112
Q ss_pred HHHHhhcccccccCCC--CchHHHHHHHh--------cCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 263 QVLSEVLDENIKIRTP--DLPKYMRERLQ--------QMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~--~~~~~l~~~l~--------~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
.+...-..+...++.. ..++.+++... ++.=+.|+|+|... ..+..|+..+....+....|+.|.+..
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 2211100111111111 23444444432 34558999999644 567788877765455666666666653
Q ss_pred hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC
Q 009845 331 VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN 385 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 385 (524)
-...--...++.+.+..++.++....+...+...... ...+...-|++..+|-
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGS 213 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCC
Confidence 3222223334889999999999999999888554422 2345566677777774
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.80 E-value=0.0004 Score=66.24 Aligned_cols=24 Identities=42% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+.+.|.|++|+|||+||+.+++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999855
No 145
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.77 E-value=8.2e-05 Score=63.32 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=24.9
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
+.+.|+|++|+||||+++.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999999877654
No 146
>PRK06526 transposase; Provisional
Probab=97.77 E-value=4.9e-05 Score=71.73 Aligned_cols=28 Identities=32% Similarity=0.121 Sum_probs=23.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+-+.|+|++|+|||+||..++......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999998876543
No 147
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0001 Score=76.54 Aligned_cols=161 Identities=18% Similarity=0.203 Sum_probs=88.6
Q ss_pred CccccchhhhhHHHhhcc----CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 188 GFVGLNSRIEEIKSLLCI----GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
+-+|.+...+++.+.|.- ..-..++++++||||+|||+|++.+++.+...|-.. .+++..+. ..+....+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~----sLGGvrDE-AEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI----SLGGVRDE-AEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE----ecCccccH-HHhcccccc
Confidence 567999999999988852 223468999999999999999999999887665311 12222111 111111111
Q ss_pred HHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH------HHHHHhcCCCCCC-------------CCcEE-E
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR------QLEYLTGGLDQFG-------------PGSRL-I 323 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~-------------~~~~i-l 323 (524)
.+..+.. .+++.+++ ...++-|++||.++... ...+++..+..-. .=|.| .
T Consensus 399 YIGamPG--------rIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIGAMPG--------KIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccCCh--------HHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 1111111 12222222 23466789999996432 1223332221100 11444 3
Q ss_pred EEeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhc
Q 009845 324 ITTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAF 362 (524)
Q Consensus 324 iTsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~ 362 (524)
|+|-|. +-.+..-.+.-.++++.+.+.+|-.++-.+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 444443 211111112227899999999999988887763
No 148
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.73 E-value=0.0014 Score=68.06 Aligned_cols=204 Identities=13% Similarity=0.085 Sum_probs=122.4
Q ss_pred CCCCccccchhhhhHHHhhcc---CCCCceEEEEeccCcchhhHHHHHHhhhhc-----ccccceEE--EEeeccccccC
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI---GLPDFRIVGIWGMGGTGKTTLAGAIFNLIS-----WEFEGKCF--MANVREESEKG 254 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~~--~~~~~~~~~~~ 254 (524)
.+..+-+|+.|..+|...+.. .......+-|+|.||+|||..+..+.+.+. ..-+...| +.... .
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~-----l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR-----L 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee-----e
Confidence 567788999999999998753 223356899999999999999999998644 12222233 33211 1
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHh-----cCccEEEecCCCCHHH--HHHHhcCCCCC-CCCcEEEEEe
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ-----QMKIFIVLDDVNKVRQ--LEYLTGGLDQF-GPGSRLIITT 326 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~~~~iliTs 326 (524)
....+++..|...+........ ...+.+..+.. .+++++++|+++.+-. -+-+...+.|. .++++++|.+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 4577888888888766543221 23344444433 4578999999964422 12222223332 4677765543
Q ss_pred CCh--hhHHH------hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCC-CCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 009845 327 RDK--QVLDD------FGVLNTNIYEVNGLEYHEALELFCNFAFKHDY-CLDDLLVLLEHVVKYANGNPLALRVLGSF 395 (524)
Q Consensus 327 R~~--~~~~~------~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 395 (524)
=.. +.... ....+...+...|.+.++-.+++..++.+... .....+-.++.++...|..-.|+...-+.
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 222 11110 01112367899999999999999988855432 22333344566666666666666555444
No 149
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.003 Score=61.45 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=93.9
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccc----c
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDE----N 272 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~ 272 (524)
+.|...+..+ .-...+.++|+.|+||+++|..++..+-..-+.. ..+ +.-...+.+...-..+ .
T Consensus 13 ~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~---~~C--------g~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 13 QNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS---EAC--------GFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC---CCC--------CCCHHHHHHHcCCCCCEEEEe
Confidence 3444554422 2356899999999999999999987542211100 000 0001111111110000 0
Q ss_pred cc--cCCC--CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCCc
Q 009845 273 IK--IRTP--DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLNT 340 (524)
Q Consensus 273 ~~--~~~~--~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~~ 340 (524)
+. .... +.+..+.+.+ .++.-++|+|+++.. .....++..+....++..+|++|.+. .++... ...+
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI-~SRC 159 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI-VSRC 159 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH-Hhcc
Confidence 00 0000 1122222222 234458899999654 44566666665545666666666654 444332 2234
Q ss_pred ceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 341 NIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 341 ~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
..+.+.+++.+++.+.+.... .+ ....++..++|.|+....+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~------~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG------IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC------Cc----hHHHHHHHcCCCHHHHHHH
Confidence 789999999999999997642 11 1346788899999966544
No 150
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.71 E-value=0.00014 Score=66.33 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=64.9
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEE-eeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA-NVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.++.|+|++|+||||++..++..+.......++.. +-.+... ... ..+ +...............++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~----~~~---i~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESK----RSL---INQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCc----cce---eeecccCCCccCHHHHHHHHhc
Confidence 47999999999999999998887654434343332 1111000 000 000 1111111112246667788888
Q ss_pred cCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 009845 290 QMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVL 332 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~ 332 (524)
..+=++++|++.+.+.....+... ..|..++.|+......
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 889999999998887766555432 2355577777665443
No 151
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00044 Score=64.32 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=36.5
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+.+|......+..++.. ...+.+.|++|+|||+||..++..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 35577888888888888863 349999999999999999998874
No 152
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.67 E-value=5.5e-05 Score=67.44 Aligned_cols=36 Identities=33% Similarity=0.232 Sum_probs=26.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..-+.++|++|+|||.||..+++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456999999999999999999987665444445554
No 153
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00017 Score=74.68 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=88.1
Q ss_pred CCccccchhhhhHHHhhc----cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHH
Q 009845 187 NGFVGLNSRIEEIKSLLC----IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
..-+|.++..+++.+++. .++-+.++++.+||||+|||.+|+.++..+...|. -..+++..+. ..+....+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDv-AeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDV-AEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccH-Hhhcccce
Confidence 356799999999988875 23455789999999999999999999998766542 2223333221 11111111
Q ss_pred HHHHhhcccccccCCCCchHHHHHHHh---cCccEEEecCCCCHH------HHHHHhcCCC------------C-CCCCc
Q 009845 263 QVLSEVLDENIKIRTPDLPKYMRERLQ---QMKIFIVLDDVNKVR------QLEYLTGGLD------------Q-FGPGS 320 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~------~~~~l~~~~~------------~-~~~~~ 320 (524)
.... .+...+.+.|+ -.+-|+.||.++... ...+++..+. + .-.-|
T Consensus 486 TYVG------------AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 486 TYVG------------AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred eeec------------cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 1111 22333444443 345688899995331 1112221111 1 01235
Q ss_pred EEEE-EeCCh-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 321 RLII-TTRDK-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 321 ~ili-TsR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
+|++ .|-|. ...+..-.+.-..+++.+...+|-..+-.+++
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6654 33332 11111001112789999999999888877766
No 154
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0012 Score=68.48 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=88.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
..+.|.|.|+.|+|||+||+++++.+.....+.+-+.++..... ..+..++.- +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~--~~~e~iQk~----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG--SSLEKIQKF----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc--hhHHHHHHH----------------HHHHHHHHH
Confidence 35689999999999999999999987754433333333332211 223333222 223345566
Q ss_pred hcCccEEEecCCCCHHH---------------HHHHh-cCCCC-CCCCcE--EEEEeCChhhHHHhCC---CCcceEEeC
Q 009845 289 QQMKIFIVLDDVNKVRQ---------------LEYLT-GGLDQ-FGPGSR--LIITTRDKQVLDDFGV---LNTNIYEVN 346 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~---------------~~~l~-~~~~~-~~~~~~--iliTsR~~~~~~~~~~---~~~~~~~l~ 346 (524)
...|-+|||||++.... +..++ ..... ...+.+ +|.|......+...-. .-.....|+
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 77899999999953311 11111 00000 012333 4445444322211111 112567899
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHHH
Q 009845 347 GLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN-PLALRVL 392 (524)
Q Consensus 347 ~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 392 (524)
++..++-.++++....... .....+...-+..+|+|. |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 9999888888877653221 111223334477778776 4444433
No 155
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00051 Score=70.03 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=93.9
Q ss_pred CCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 186 FNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
...+=|.+..+.+|..++.. +-...+-|.++||||+|||.||++++.++.-.| +. + +
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~-i---s---- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS-I---S---- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee-e---c----
Confidence 35677999999999887632 223468899999999999999999999865432 22 0 0
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-------------HHHHHhcCCCCC------
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-------------QLEYLTGGLDQF------ 316 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~------ 316 (524)
. .++.+.+..+. ...+.+.+.+.-..-+++++||+++... -+..|+..+...
T Consensus 256 -A----peivSGvSGES----EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 256 -A----PEIVSGVSGES----EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -c----hhhhcccCccc----HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 0 11222211110 1123344444555679999999995331 123344333221
Q ss_pred CCCcEEEE-EeCChhhHHHh---CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC
Q 009845 317 GPGSRLII-TTRDKQVLDDF---GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN 385 (524)
Q Consensus 317 ~~~~~ili-TsR~~~~~~~~---~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 385 (524)
+.+.-||- |+|...+-..+ |.. .+.|.|.--+...-.+++...+.+-..... -...+|++.+-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRF-drEI~l~vP~e~aR~~IL~~~~~~lrl~g~---~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRF-DREICLGVPSETAREEILRIICRGLRLSGD---FDFKQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccc-cceeeecCCchHHHHHHHHHHHhhCCCCCC---cCHHHHHhcCCCc
Confidence 12222232 45544332222 221 155777766666666666655532221111 1145566666665
No 156
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0028 Score=62.39 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=57.9
Q ss_pred CccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-hhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCC
Q 009845 291 MKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRD-KQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYC 367 (524)
Q Consensus 291 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~ 367 (524)
+.-++|+|+++.. .....|+..+....++..+|++|.+ ..++... ...+..+.+.+++.++..+.+.... .+
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI-~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTI-LSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHH-HhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 4458889999643 4556666666554566666655555 4444332 2223789999999999999998752 11
Q ss_pred CchHHHHHHHHHHHhCCChHHHHH
Q 009845 368 LDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 368 ~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
. ...++..++|.|+....
T Consensus 207 ~------~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 207 D------ADALLAEAGGAPLAALA 224 (342)
T ss_pred h------HHHHHHHcCCCHHHHHH
Confidence 1 22356778999975443
No 157
>PRK04132 replication factor C small subunit; Provisional
Probab=97.63 E-value=0.0018 Score=70.77 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=91.5
Q ss_pred Eec--cCcchhhHHHHHHhhhhcc-cccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcC
Q 009845 215 IWG--MGGTGKTTLAGAIFNLISW-EFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQM 291 (524)
Q Consensus 215 I~G--~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~ 291 (524)
+.| |.++||||+|..+++.+-. .+...+.-.+.... .+.. ..++++..+....+- -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~----rgid-~IR~iIk~~a~~~~~-------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE----RGIN-VIREKVKEFARTKPI-------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc----ccHH-HHHHHHHHHHhcCCc-------------CCCC
Confidence 447 8899999999999998632 23322333222221 2333 333333332111000 0123
Q ss_pred ccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCC
Q 009845 292 KIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ-VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCL 368 (524)
Q Consensus 292 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~ 368 (524)
.-++|||+++.. ++...|+..+......+++|+++.+.. +.... ...+..+++.+++.++..+.+...+-..+..
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI-rSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~- 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI-QSRCAIFRFRPLRDEDIAKRLRYIAENEGLE- 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH-hhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-
Confidence 469999999755 355566655554455677777666553 22221 2234889999999999998888776433221
Q ss_pred chHHHHHHHHHHHhCCChHHHH
Q 009845 369 DDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 369 ~~~~~~~~~i~~~~~G~PLal~ 390 (524)
...+....|+..++|.+....
T Consensus 709 -i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 -LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -CCHHHHHHHHHHcCCCHHHHH
Confidence 124578889999999985543
No 158
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00032 Score=66.10 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=49.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc----ccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS----WEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMR 285 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~ 285 (524)
.|+|.++||||.|||+|++++++.+. +.|.....+. -....++...+++-+.-.. .+...+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE---------inshsLFSKWFsESgKlV~-----kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE---------INSHSLFSKWFSESGKLVA-----KMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE---------EehhHHHHHHHhhhhhHHH-----HHHHHHH
Confidence 68999999999999999999999643 3354444444 1122344444433221100 2445556
Q ss_pred HHHhcCc--cEEEecCCCCHH
Q 009845 286 ERLQQMK--IFIVLDDVNKVR 304 (524)
Q Consensus 286 ~~l~~~~--~LlVlDdv~~~~ 304 (524)
+.+..+. +.+.+|+|+...
T Consensus 243 ELv~d~~~lVfvLIDEVESLa 263 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLA 263 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHH
Confidence 6666655 456689996543
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=0.0011 Score=73.60 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCccccchhhhhHHHhhccC-------CCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999988877521 111347889999999999999999986643
No 160
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.61 E-value=0.0003 Score=77.60 Aligned_cols=50 Identities=28% Similarity=0.352 Sum_probs=39.0
Q ss_pred CccccchhhhhHHHhhcc----CCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 188 GFVGLNSRIEEIKSLLCI----GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+|.+...+.+..++.. +....+.+.++|++|+|||++|+.+++.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 477888888888876642 22235689999999999999999999987544
No 161
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.59 E-value=0.0013 Score=72.17 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCccccchhhhhHHHhhccC-----C--CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-----L--PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-----~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..++|-+..++.+...+... + .....+.++||+|+|||.||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46889999999888876521 1 1234688999999999999999998763
No 162
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.59 E-value=0.00043 Score=62.18 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=40.4
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....+||-++-++.|.-....+ +.+-+.|.||||+||||-+..+++.+-.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3456899999999888776643 4678899999999999999999987543
No 163
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0019 Score=64.84 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=75.1
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
.+...+.+.|++|+|||+||.+++.. ..|+.+-.+. ...- -++.+-.+-. .+.......
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe~m--iG~sEsaKc~--------------~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PEDM--IGLSESAKCA--------------HIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hHHc--cCccHHHHHH--------------HHHHHHHHh
Confidence 34678889999999999999999874 4465333322 1000 1111110000 011122223
Q ss_pred HhcCccEEEecCCCCHHH------------HHHHh---cCCCCCCCCcEEEEEeCChhhHHHhCCCC--cceEEeCCCCH
Q 009845 288 LQQMKIFIVLDDVNKVRQ------------LEYLT---GGLDQFGPGSRLIITTRDKQVLDDFGVLN--TNIYEVNGLEY 350 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~~------------~~~l~---~~~~~~~~~~~iliTsR~~~~~~~~~~~~--~~~~~l~~L~~ 350 (524)
-+..--.||+||++..-+ ++.|+ ...+.-+...-|+-||....++..++... ...+.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 344556899999965433 23333 22222122233455777778888776432 25789999987
Q ss_pred -HHHHHHHHhhh
Q 009845 351 -HEALELFCNFA 361 (524)
Q Consensus 351 -~ea~~ll~~~~ 361 (524)
++..+.++..-
T Consensus 675 ~~~~~~vl~~~n 686 (744)
T KOG0741|consen 675 GEQLLEVLEELN 686 (744)
T ss_pred hHHHHHHHHHcc
Confidence 77777777654
No 164
>PTZ00494 tuzin-like protein; Provisional
Probab=97.56 E-value=0.0042 Score=61.58 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=113.5
Q ss_pred CCCCCCCCchh--hHHHHHHHHHHHhhhhcc-----cCCCCCCCccccchhhhhHHHhhccCC-CCceEEEEeccCcchh
Q 009845 152 SGWDSMNIRPE--AKLVDEIINDILKKLKAR-----SFSSDFNGFVGLNSRIEEIKSLLCIGL-PDFRIVGIWGMGGTGK 223 (524)
Q Consensus 152 ~g~~~~~~~~~--~~~i~~i~~~v~~~l~~~-----~~~~~~~~~vGR~~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGK 223 (524)
.||.+.++..+ +..+.-.++.+.+.+++. ..+.....+|.|+.|-..+...|.+.. ..+|+++++|.-|+||
T Consensus 329 FgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGK 408 (664)
T PTZ00494 329 FTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGR 408 (664)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCc
Confidence 46666665543 233344555555554441 234567889999999999999887543 3489999999999999
Q ss_pred hHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH-------HhcCccEEE
Q 009845 224 TTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER-------LQQMKIFIV 296 (524)
Q Consensus 224 TtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~-------l~~~~~LlV 296 (524)
|+|.+.....- .-..+|++ ++. ..+-++.+.+.++.++.+.-.+ +.+.+.+. ..++.-+||
T Consensus 409 SslcRsAvrkE---~~paV~VD-VRg-------~EDtLrsVVKALgV~nve~CGD-lLdFI~ea~~~A~~~~~g~~P~lV 476 (664)
T PTZ00494 409 CVPCRRAVRVE---GVALVHVD-VGG-------TEDTLRSVVRALGVSNVEVCGD-LLGFVEEAMRGATVKASDGVPFLV 476 (664)
T ss_pred hHHHHHHHHHc---CCCeEEEE-ecC-------CcchHHHHHHHhCCCChhhhcc-HHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999876542 22345555 332 3345666777777665443222 33333332 234444555
Q ss_pred ec--CCCCHHH-HHHHhcCCCCCCCCcEEEEEeCChhhHH-HhCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 297 LD--DVNKVRQ-LEYLTGGLDQFGPGSRLIITTRDKQVLD-DFGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 297 lD--dv~~~~~-~~~l~~~~~~~~~~~~iliTsR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
+- +-.+..- ..+.. .+.....-|+|++----+.+.. ....+.-..|.+++++.++|.++.+...
T Consensus 477 lkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 477 MRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred EEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 43 2222221 11111 1111134577776433322111 1112222679999999999999888766
No 165
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0023 Score=63.20 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+.++|+|+|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35799999999999999999999876544
No 166
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00027 Score=72.82 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=84.4
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
...+-|.++||||+|||++|+.+++.-...|-.+ .-.+++.... +.. ...+.+.+.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv--------------kgpEL~sk~v---GeS-----Er~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV--------------KGPELFSKYV---GES-----ERAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec--------------cCHHHHHHhc---Cch-----HHHHHHHHHHH
Confidence 4578899999999999999999999766554211 0111111111 100 00122223333
Q ss_pred HhcCccEEEecCCCCHH-------------HHHHHhcCCCCCCCCcEEEE---EeCChhhHHHh----CCCCcceEEeCC
Q 009845 288 LQQMKIFIVLDDVNKVR-------------QLEYLTGGLDQFGPGSRLII---TTRDKQVLDDF----GVLNTNIYEVNG 347 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~~ili---TsR~~~~~~~~----~~~~~~~~~l~~ 347 (524)
-+-.+.+|+||+++... .+..++..+........|+| |.|...+-..+ ..+ ..+.+++
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD--~iiyVpl 601 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLD--RIIYVPL 601 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccc--eeEeecC
Confidence 34467999999996442 24455555554444434433 33433332221 123 5677877
Q ss_pred CCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 348 LEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 348 L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
-+.+.-.++|..++.+-..... -...+|++++.|.-
T Consensus 602 PD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 602 PDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred ccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 7777778888888743322221 12456777777664
No 167
>PRK04296 thymidine kinase; Provisional
Probab=97.55 E-value=0.00013 Score=65.99 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=59.8
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc--cCCC-CchHHHHHH
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK--IRTP-DLPKYMRER 287 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~-~~~~~l~~~ 287 (524)
.++.|+|++|.||||++..++.+...+....+++. . ..... .. ...+++.++..... .... ++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~-~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDR-YG----EGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccc-cc----CCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 47889999999999999999988765543333332 1 00000 11 11223333321111 1111 22223333
Q ss_pred HhcCccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 288 LQQMKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 288 l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
..++.-+||+|.+.- .+++..+...+. ..|..|++|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 233556999999943 344555544432 45788999999853
No 168
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0012 Score=65.21 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=80.4
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc---------------------ceEEEEee
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE---------------------GKCFMANV 247 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~ 247 (524)
++|-+....++..+..........+.++||+|+||||+|..+++.+....+ ....+. .
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-P 81 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-c
Confidence 566677777787777643334556999999999999999999997653321 111111 0
Q ss_pred ccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEEE
Q 009845 248 REESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLIIT 325 (524)
Q Consensus 248 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iliT 325 (524)
...... ....+..+.+........ ..++.-++++|+++... ....+...+........+|++
T Consensus 82 s~~~~~-~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKI-DIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCC-cchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 000000 001222222222211110 02456799999997654 344555444444567778777
Q ss_pred eCChh-hHHHhCCCCcceEEeCCCCHHHHHH
Q 009845 326 TRDKQ-VLDDFGVLNTNIYEVNGLEYHEALE 355 (524)
Q Consensus 326 sR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~ 355 (524)
|.+.. +.... ...+..+++.+.+..+...
T Consensus 146 ~n~~~~il~tI-~SRc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 146 TNDPSKILPTI-RSRCQRIRFKPPSRLEAIA 175 (325)
T ss_pred cCChhhccchh-hhcceeeecCCchHHHHHH
Confidence 77442 22211 2223677787744444333
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=0.0012 Score=73.68 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCccccchhhhhHHHhhccC-------CCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++|.+..++.+...+... ......+.++|++|+|||++|+.++..+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999998877532 1124578899999999999999999876543
No 170
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.53 E-value=0.0004 Score=67.49 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=56.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.+-+.|+|++|+|||.||..+++.+...-..+.|+. ...+...+-...... .....+. .+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-------~~~~~l~-~l- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-------SVKEKID-AV- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-------cHHHHHH-Hh-
Confidence 467999999999999999999998875544444444 234444443333211 1112222 22
Q ss_pred cCccEEEecCCC--CHHHHH--HHhcCC-C-CCCCCcEEEEEeCCh
Q 009845 290 QMKIFIVLDDVN--KVRQLE--YLTGGL-D-QFGPGSRLIITTRDK 329 (524)
Q Consensus 290 ~~~~LlVlDdv~--~~~~~~--~l~~~~-~-~~~~~~~iliTsR~~ 329 (524)
.+-=||||||+. ....|. .++..+ . ....+..+|+||.-.
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 245689999993 222222 233222 1 112455678888643
No 171
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.52 E-value=0.00023 Score=71.57 Aligned_cols=46 Identities=28% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567778888888888763 346889999999999999999987653
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00067 Score=72.52 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=73.7
Q ss_pred CCccccchhhhhHHHhhcc-------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 187 NGFVGLNSRIEEIKSLLCI-------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
...+|-+..+..+.+.+.. ++.+.......||.|+|||-||++++..+...-...+-++ .++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~-------- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYM-------- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHH--------
Confidence 4688999999988877642 2233567888999999999999999998764433333333 22221
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCcc-EEEecCCC--CHHHHHHHhcCCC
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKI-FIVLDDVN--KVRQLEYLTGGLD 314 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~~~ 314 (524)
-+.-.+.+-...++--.-+--..+.+..+++|+ +|.||+++ .++...-|++.+.
T Consensus 562 -EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 562 -EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred -HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 122222332222221111224456677778887 88899994 5666777776664
No 173
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.50 E-value=0.00037 Score=68.46 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=60.1
Q ss_pred HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccce-EEEEeeccccccCcChHHHHHHHHHhhcccccccCC
Q 009845 199 IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGK-CFMANVREESEKGGGLVHLREQVLSEVLDENIKIRT 277 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 277 (524)
+.+.+.. -+..+.+.|+|++|+|||||++.+++.+..+.+.. +++..+.+. .....++.+.+...+.....+.+.
T Consensus 123 vID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 123 VVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCCH
Confidence 4555542 12345679999999999999999999876654333 344333332 256778888887765543322211
Q ss_pred C---Cch---HHHHHHH--hcCccEEEecCCCC
Q 009845 278 P---DLP---KYMRERL--QQMKIFIVLDDVNK 302 (524)
Q Consensus 278 ~---~~~---~~l~~~l--~~~~~LlVlDdv~~ 302 (524)
. ... ..+.+.+ .+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 111 1111112 47899999999943
No 174
>PRK06921 hypothetical protein; Provisional
Probab=97.50 E-value=0.00036 Score=66.44 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=28.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
...+.++|++|+|||+||..+++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4679999999999999999999987665 33445554
No 175
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.49 E-value=0.0013 Score=69.28 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=38.2
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999876533 3456789999999999999998764
No 176
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.49 E-value=0.0034 Score=63.89 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=25.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999877654
No 177
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.46 E-value=0.0041 Score=61.30 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=38.8
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..++|+...++++.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46999999999998877654444567999999999999999987653
No 178
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.46 E-value=0.00022 Score=69.82 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=28.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..+.++|++|+|||.||..+++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57999999999999999999998765544445554
No 179
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.46 E-value=0.00014 Score=62.17 Aligned_cols=45 Identities=29% Similarity=0.250 Sum_probs=33.4
Q ss_pred cccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 190 VGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 190 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
||....++++.+.+..-......|.|+|.+|+||+++|+.+.+.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577888888888776444455678999999999999999877643
No 180
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.44 E-value=0.00025 Score=66.14 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=37.5
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|..+|..+-+...++.|+|++|+|||+||.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455666555556789999999999999999999987665555566665
No 181
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.00091 Score=65.61 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=50.6
Q ss_pred CccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCC
Q 009845 291 MKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCL 368 (524)
Q Consensus 291 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~ 368 (524)
++-++|+|+++.. .....++..+.....+..+|++|.+.......-...+..+.+.+++.+++.+.+.... . .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 3445567888543 3444444433332345667777777643221112223789999999999999987642 1 1
Q ss_pred chHHHHHHHHHHHhCCChHHH
Q 009845 369 DDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 369 ~~~~~~~~~i~~~~~G~PLal 389 (524)
.. . .....++|-|+..
T Consensus 188 ~~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLFD 203 (325)
T ss_pred cH-H----HHHHHhCCChhhh
Confidence 11 1 1235688999643
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0021 Score=65.80 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=77.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
..-|.+|||||+|||-||+++++.-..+| +. +. + .+++.....+ .. ......+.+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK-------G-PELlNkYVGE---SE-----rAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK-------G-PELLNKYVGE---SE-----RAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec-------C-HHHHHHHhhh---HH-----HHHHHHHHHhhc
Confidence 45688999999999999999999876654 22 11 1 1222222211 10 012233334445
Q ss_pred cCccEEEecCCCCH-------------HHHHHHhcCCCCCC--CCcEEEEEeCChhhH-HHh----CCCCcceEEeCCCC
Q 009845 290 QMKIFIVLDDVNKV-------------RQLEYLTGGLDQFG--PGSRLIITTRDKQVL-DDF----GVLNTNIYEVNGLE 349 (524)
Q Consensus 290 ~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~~~~iliTsR~~~~~-~~~----~~~~~~~~~l~~L~ 349 (524)
..+++|+||.++.. ..+..|+..+.... .|..||-.|..+++. ..+ ..+ ..+-|+.-+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlD--k~LyV~lPn 680 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLD--KLLYVGLPN 680 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccC--ceeeecCCC
Confidence 67999999999543 23455665555332 344555544444332 221 123 567788888
Q ss_pred HHHHHHHHHhhhcC
Q 009845 350 YHEALELFCNFAFK 363 (524)
Q Consensus 350 ~~ea~~ll~~~~~~ 363 (524)
.+|-.+++......
T Consensus 681 ~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 681 AEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999888753
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0024 Score=68.47 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=86.6
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccc-----eEEEEeeccccccCcChH
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEG-----KCFMANVREESEKGGGLV 258 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~-----~~~~~~~~~~~~~~~~~~ 258 (524)
..++.+||+.|++++...|.....+.+ .++|.+|+|||+++.-++.++... .+. .++-.++ .
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~----------g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL----------G 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH----------H
Confidence 346799999999999999985544333 367999999999999999876443 221 1221111 1
Q ss_pred HHHHHHHHhhcccccccCCC-CchHHHHHHHhcCccEEEecCCCC-----------HHHHHHHhcCCCCCCCCcEEEEEe
Q 009845 259 HLREQVLSEVLDENIKIRTP-DLPKYMRERLQQMKIFIVLDDVNK-----------VRQLEYLTGGLDQFGPGSRLIITT 326 (524)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~~~~iliTs 326 (524)
.+. ........-. .+...+.+.-+..+++|++|.+.. .+...-+.+.+.. +.--.|-.||
T Consensus 236 ~Lv-------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 236 SLV-------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred HHh-------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 110 0010111111 122223333334589999999832 2222333344331 2222345566
Q ss_pred CChhh--HHH-h-CCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 327 RDKQV--LDD-F-GVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 327 R~~~~--~~~-~-~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
-++.- ... . -....+.+.|...+.+++.++++-..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 55521 100 0 00112789999999999998887543
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.42 E-value=0.00095 Score=58.57 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=69.9
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc--------------------ccceEEEEeeccc
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE--------------------FEGKCFMANVREE 250 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~ 250 (524)
|-+...+.|...+..+ .-...+.++|+.|+||+++|..+++.+-.. ++...++... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4455667777777633 225678999999999999999998864322 1222222100 00
Q ss_pred cccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC
Q 009845 251 SEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRD 328 (524)
Q Consensus 251 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~ 328 (524)
. ..-...++. .+...+.... ..++.=++||||++.. +....|+..+.....++.+|++|.+
T Consensus 79 ~-~~i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 K-KSIKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp S-SSBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred c-chhhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0 001111111 2222211110 0234558999999653 4455565555444578888888887
Q ss_pred hhh-HHHhCCCCcceEEeCCCC
Q 009845 329 KQV-LDDFGVLNTNIYEVNGLE 349 (524)
Q Consensus 329 ~~~-~~~~~~~~~~~~~l~~L~ 349 (524)
..- +... ......+.+.+|+
T Consensus 142 ~~~il~TI-~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTI-RSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHH-HTTSEEEEE----
T ss_pred hHHChHHH-HhhceEEecCCCC
Confidence 743 2221 1223677777764
No 185
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.41 E-value=0.0004 Score=69.00 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=64.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
...+.|+|++|+||||++..+...+.......++.. .. ............................++..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti--Ed------p~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI--ED------PIEYVHRNKRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE--cC------ChhhhccCccceEEccccCCCCcCHHHHHHHhhc
Confidence 468999999999999999998887665444444433 00 0000000000001111111112246677888899
Q ss_pred cCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 290 QMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
..+=+|++|++.+.+.....+... ..|..++.|.....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 999999999998887766544332 23545666655543
No 186
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.41 E-value=0.00095 Score=73.98 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCccccchhhhhHHHhhcc-------CCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCI-------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++|-+..++.+.+.+.. +.....++.++||+|+|||.||+.+++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4688999999888877632 1222457899999999999999999887643
No 187
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0015 Score=71.08 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCccccchhhhhHHHhhccC-------CCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..++|-+..++.|...+... ......+.++||+|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999998877521 12245789999999999999999988773
No 188
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.40 E-value=0.0024 Score=62.94 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=35.9
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
++|....++++.+.+..-......|.|+|.+|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 578888888888777644444567999999999999999988764
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.40 E-value=0.0024 Score=67.65 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=41.7
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.....++|.+..++++.+.+..-......|.|+|++|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999998776444445678999999999999999988754
No 190
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00061 Score=64.40 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=45.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...-+.++|++|+|||.||.++++.+......+.|+. ..++...+....... .....+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~~-------~~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDEG-------RLEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcC-------chHHHHHHHh
Confidence 4457999999999999999999999883323333443 445555554443321 1222233322
Q ss_pred hcCccEEEecCC
Q 009845 289 QQMKIFIVLDDV 300 (524)
Q Consensus 289 ~~~~~LlVlDdv 300 (524)
. +-=||||||+
T Consensus 166 ~-~~dlLIiDDl 176 (254)
T COG1484 166 K-KVDLLIIDDI 176 (254)
T ss_pred h-cCCEEEEecc
Confidence 2 2348999999
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.39 E-value=0.00016 Score=61.88 Aligned_cols=22 Identities=50% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEeccCcchhhHHHHHHhhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 192
>PRK14974 cell division protein FtsY; Provisional
Probab=97.38 E-value=0.0043 Score=60.92 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+..++.++|++|+||||++..+++.+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998876654
No 193
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.37 E-value=0.00088 Score=63.81 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=61.8
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK 274 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 274 (524)
.++.|..++.. ....+.|+|+.|+||||++..+...+.......+.+.+..+... .+ ..+.... .
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~--------~~q~~v~--~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PG--------INQVQVN--E 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CC--------ceEEEeC--C
Confidence 34445555542 24589999999999999999988776542222333332222110 00 0011100 1
Q ss_pred cCCCCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcC
Q 009845 275 IRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 275 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
.........++..++..+-.|+++++.+.+....++..
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 11124677888889999999999999988876655544
No 194
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.34 E-value=0.00033 Score=61.38 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=26.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
++.|+|++|+|||+++..++......-...+|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765444445554
No 195
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.34 E-value=0.00065 Score=63.76 Aligned_cols=49 Identities=24% Similarity=0.195 Sum_probs=35.7
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|...|..+-+...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 4455666655566789999999999999999999776444434455554
No 196
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.34 E-value=0.0047 Score=59.08 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+.+++.++|++|+||||++..++..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 197
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.33 E-value=0.00031 Score=61.94 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=43.0
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhc-
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQ- 290 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~- 290 (524)
++.|.|.+|+|||++|.+++... .....++... .. .+ .++.+.+..............+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~---~~~~~y~at~-~~----~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL---GGPVTYIATA-EA----FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEcc-Cc----CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 36799999999999999998652 2234444311 11 11 233333333222222222222444445555532
Q ss_pred -CccEEEecCC
Q 009845 291 -MKIFIVLDDV 300 (524)
Q Consensus 291 -~~~LlVlDdv 300 (524)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 3457999987
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.33 E-value=0.00061 Score=61.70 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=48.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC-CchHHHHHH-
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP-DLPKYMRER- 287 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~- 287 (524)
++++.++|+.|+||||.+.+++.+...+-....+++ .. ....+..+-++.+...++.+....... +-.+.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D---~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-AD---TYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-ES---TSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-CC---CCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 368999999999999999999988766633344443 21 111344455566666666543322221 222222222
Q ss_pred --Hhc-CccEEEecCC
Q 009845 288 --LQQ-MKIFIVLDDV 300 (524)
Q Consensus 288 --l~~-~~~LlVlDdv 300 (524)
.+. +-=++++|-.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 222 3348888876
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0023 Score=57.97 Aligned_cols=56 Identities=30% Similarity=0.399 Sum_probs=42.2
Q ss_pred CCCCCccccchhhhhHHHhh---ccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccc
Q 009845 184 SDFNGFVGLNSRIEEIKSLL---CIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG 240 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 240 (524)
.....++|-+...+.|.+-. ..+- ..--|.+||..|+|||+|++++.+.+......
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 34467899999988886532 2222 24468899999999999999999988776554
No 200
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.32 E-value=0.0061 Score=66.96 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=40.7
Q ss_pred CCccccchhhhhHHHhhcc----CCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 187 NGFVGLNSRIEEIKSLLCI----GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+|.+...+++..+|.. ......+++++|++|+||||+++.++..+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3588999999999887763 12245689999999999999999999876544
No 201
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.31 E-value=0.0077 Score=63.33 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....++|+...++++.+.+..-......|.|+|.+|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 356799999999999988875555567899999999999999999887543
No 202
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.30 E-value=0.0014 Score=68.04 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=38.0
Q ss_pred CCccccchhhhhHHHhhcc---CCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSRIEEIKSLLCI---GLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..++--...++++..||.. +....+++.++||+|+||||.++.+++.+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444556678888888864 233467999999999999999999998764
No 203
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.30 E-value=0.00043 Score=64.19 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=37.4
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
+..|..+|..+-+...++.|+|++|+|||||+.+++......-...+|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666655556789999999999999999999987655544555664
No 204
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.30 E-value=0.00069 Score=62.37 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.0
Q ss_pred HhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 201 SLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 201 ~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
++|..+-+...++.|+|++|+|||+|+.+++..........+|+.
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345545556789999999999999999999887655555567776
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.29 E-value=0.00018 Score=70.23 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=41.7
Q ss_pred CCccccchhhhhHHHhhccC----CCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG----LPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++|.++.++++.+++... ....++++|+||+|+||||||..+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999999988632 224689999999999999999999987644
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.0026 Score=58.94 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=29.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
-.++|.|.+|+|||+|+..+.......|.....+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36889999999999999999998888886555443
No 207
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.28 E-value=0.0034 Score=59.78 Aligned_cols=176 Identities=17% Similarity=0.150 Sum_probs=99.8
Q ss_pred CCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc-CcChHHHH
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK-GGGLVHLR 261 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~ 261 (524)
+-..|+|-.++...+..++.+. -+....|.|.||.|.|||.|......+ .+.+.....++.+.+.... ...+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3467999999999999988642 123457889999999999998887766 4445555556555444321 01233344
Q ss_pred HHHHHhhccccccc-CCCCchHHHHHHHhc------CccEEEecCCCCHHH------HHHHhcC-CCCCCCCcEEEEEeC
Q 009845 262 EQVLSEVLDENIKI-RTPDLPKYMRERLQQ------MKIFIVLDDVNKVRQ------LEYLTGG-LDQFGPGSRLIITTR 327 (524)
Q Consensus 262 ~~l~~~l~~~~~~~-~~~~~~~~l~~~l~~------~~~LlVlDdv~~~~~------~~~l~~~-~~~~~~~~~iliTsR 327 (524)
+++..++....... +..+....+...|+. .++++|+|+++.-.. +-.+... -....|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44444332221111 111344455555543 368999998853211 1111111 111245566778998
Q ss_pred ChhhH--HH-h--CCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 328 DKQVL--DD-F--GVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 328 ~~~~~--~~-~--~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
-...- .. . ....-.++-+++++.++-.+++++.+
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 76321 11 0 11111356667788888888888876
No 208
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.28 E-value=0.011 Score=64.56 Aligned_cols=49 Identities=29% Similarity=0.319 Sum_probs=39.7
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...++|+...++.+.+.+..-......|.|+|++|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4579999999999887665433445689999999999999999987754
No 209
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.27 E-value=0.0012 Score=65.93 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=55.7
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 275 (524)
+.+|...|..+-....++.|.|++|+|||||+.+++..........+|+. .. .....+.. .+..++......
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs-~E------Es~~qi~~-Ra~rlg~~~~~l 139 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS-GE------ESPEQIKL-RADRLGISTENL 139 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-CC------cCHHHHHH-HHHHcCCCcccE
Confidence 34566666555455779999999999999999999987765544455554 11 11222221 122333222111
Q ss_pred --CCCCchHHHHHHH-hcCccEEEecCC
Q 009845 276 --RTPDLPKYMRERL-QQMKIFIVLDDV 300 (524)
Q Consensus 276 --~~~~~~~~l~~~l-~~~~~LlVlDdv 300 (524)
........+.+.+ ..++-+||+|.+
T Consensus 140 ~l~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 140 YLLAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EEEccCcHHHHHHHHHhcCCcEEEEcch
Confidence 1111223333333 347789999998
No 210
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0015 Score=63.92 Aligned_cols=97 Identities=23% Similarity=0.200 Sum_probs=59.2
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK 274 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 274 (524)
-+.++...|..+--...++.|-|.||||||||..+++.++.... ...++. .+.+ ..+ .+--+..++....+
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEES-----~~Q-iklRA~RL~~~~~~ 148 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEES-----LQQ-IKLRADRLGLPTNN 148 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC-----HHH-HHHHHHHhCCCccc
Confidence 34566677764433467999999999999999999999988776 445554 1111 111 12222334433222
Q ss_pred c--CCC-CchHHHHHHHhcCccEEEecCC
Q 009845 275 I--RTP-DLPKYMRERLQQMKIFIVLDDV 300 (524)
Q Consensus 275 ~--~~~-~~~~~l~~~l~~~~~LlVlDdv 300 (524)
. -.. .+...+...-+.++-++|+|-+
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 2 122 3333444444568899999998
No 211
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.24 E-value=0.00093 Score=60.41 Aligned_cols=127 Identities=22% Similarity=0.218 Sum_probs=56.6
Q ss_pred cchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh--cccccceEEEEeecccccc-CcChHHHHHH-----
Q 009845 192 LNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI--SWEFEGKCFMANVREESEK-GGGLVHLREQ----- 263 (524)
Q Consensus 192 R~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~----- 263 (524)
+..+.....+.|. ...++.+.|++|+|||.||.+.+-+. ...|...++....-..... .+-.-++.+.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3444555555554 34599999999999999999887643 3445555554322211110 0000111111
Q ss_pred --HHHhhcccccccCCCCchHHHHH----------HHhcC---ccEEEecCCC--CHHHHHHHhcCCCCCCCCcEEEEEe
Q 009845 264 --VLSEVLDENIKIRTPDLPKYMRE----------RLQQM---KIFIVLDDVN--KVRQLEYLTGGLDQFGPGSRLIITT 326 (524)
Q Consensus 264 --l~~~l~~~~~~~~~~~~~~~l~~----------~l~~~---~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iliTs 326 (524)
+...+..-. .....+.+.+ .++++ ..+||+|++. +..++..++... +.+|++|++-
T Consensus 81 ~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE
T ss_pred HHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEec
Confidence 110110000 0011111111 12332 5699999994 456777777654 6899999987
Q ss_pred CCh
Q 009845 327 RDK 329 (524)
Q Consensus 327 R~~ 329 (524)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 643
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.23 E-value=0.00023 Score=59.13 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 213
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.23 E-value=0.0041 Score=62.96 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=34.6
Q ss_pred chhhhhHHHhhc-----cCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 193 NSRIEEIKSLLC-----IGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 193 ~~~l~~l~~~L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+.++..||. ...-+.+++.|+||+|+||||-++.++..+.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 456778888887 4455688999999999999999999887643
No 214
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.22 E-value=0.00072 Score=58.48 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=59.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh-----hccccc-ccCCC------
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE-----VLDENI-KIRTP------ 278 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----l~~~~~-~~~~~------ 278 (524)
..|-|++..|.||||+|...+-+...+-..+.++--+.... . .+-...++.+ .. .+.... .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888899999999998887655533344433222211 1 2233333333 11 010000 00000
Q ss_pred --CchHHHHHHHhcC-ccEEEecCCCCH-----HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 279 --DLPKYMRERLQQM-KIFIVLDDVNKV-----RQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 279 --~~~~~l~~~l~~~-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
+..+..++.+... -=|||||++-.. -..+.+...+....++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333334433 459999999322 122333333333346779999999874
No 215
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.22 E-value=0.0018 Score=60.43 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=35.4
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc------cceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF------EGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 245 (524)
..|..+|..+-+...++.|+|++|+|||+|+.+++....... ...+|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 345556654555678999999999999999999987654443 3455655
No 216
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00031 Score=59.53 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=27.8
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc-ccceEEE
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFM 244 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 244 (524)
--|+|+|+||+|||||+..+++.++.. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 468999999999999999999988766 6544443
No 217
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.21 E-value=0.0023 Score=71.25 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=65.1
Q ss_pred CCccccchhhhhHHHhhcc-------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 187 NGFVGLNSRIEEIKSLLCI-------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
..++|-+..++.+...+.. ++.....+.++||+|+|||+||+.+++.+.......+ ..+..+.... .....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~-~~d~s~~~~~-~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMI-RLDMSEYMEK-HTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceE-EEEchhcccc-ccHHH
Confidence 5688999999999877642 1112346779999999999999999987643322222 2222222211 11111
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCc-cEEEecCCCC--HHHHHHHhcCCC
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMK-IFIVLDDVNK--VRQLEYLTGGLD 314 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~--~~~~~~l~~~~~ 314 (524)
+ .+.+...... .....+.+.++.++ .+++||+++. .+....|+..+.
T Consensus 587 ----l---~g~~~gyvg~-~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 ----L---IGSPPGYVGY-NEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred ----h---cCCCCcccCc-CccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 1111100111 11224555566666 4899999953 444555555443
No 218
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0064 Score=64.80 Aligned_cols=179 Identities=20% Similarity=0.187 Sum_probs=102.2
Q ss_pred CCCCccccchhhhhHHHh---hcc-------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 185 DFNGFVGLNSRIEEIKSL---LCI-------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~---L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
...++.|-++..++|++. |.. +..-++-+.++||||+|||-||++++-... +-|+....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSG------ 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSG------ 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeeech------
Confidence 345778887776666654 432 223367899999999999999999987643 23333111
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-----------------HHHHHHhcCCCCCC
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-----------------RQLEYLTGGLDQFG 317 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~ 317 (524)
.+..+.+.. .+ ...........-.+.|+++.+|+++.. ..+..++..+..+.
T Consensus 378 ---SEFvE~~~g-~~-------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 378 ---SEFVEMFVG-VG-------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ---HHHHHHhcc-cc-------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 111111110 00 001222233333457889999988532 12455555555444
Q ss_pred CCcEE--EEEeCChhhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 318 PGSRL--IITTRDKQVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 318 ~~~~i--liTsR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
.+..| +-+|+..+++... ..+ ..+.++.-+...-.++|.-++...... ....++.+ ++..+-|++=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfd--r~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFD--RQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccc--cceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 33333 3344444443221 122 567888888888889998888544432 34445555 899999988554
No 219
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.20 E-value=0.0011 Score=61.28 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=112.5
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc------cccceEEEEeecc---------c-
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW------EFEGKCFMANVRE---------E- 250 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~---------~- 250 (524)
..+.++++.-..|.++.. .++-+-..++||+|.||-|.+..+.+++-. +-+...|...... .
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 347777777777777665 234678999999999999999888775432 1122233221111 0
Q ss_pred ------cccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCcc-EEEecCCCCH--HHHHHHhcCCCCCCCCcE
Q 009845 251 ------SEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKI-FIVLDDVNKV--RQLEYLTGGLDQFGPGSR 321 (524)
Q Consensus 251 ------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ 321 (524)
++....-..+.+.+++++.+..+-. ....+++ ++|+-.++.. +.-..+..........+|
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie-----------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE-----------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh-----------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 0000111223334444433221100 0012333 6667666543 222223322222246788
Q ss_pred EEEEeCChh--hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhc--
Q 009845 322 LIITTRDKQ--VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLH-- 397 (524)
Q Consensus 322 iliTsR~~~--~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~-- 397 (524)
+|+...+-. +... ...+-.++++..+++|....+++.+-+.+...+ .+++.+|+++++|+---.-++....+
T Consensus 160 lIl~cns~SriIepI--rSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPI--RSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred EEEEecCcccchhHH--hhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 877543321 1111 111256899999999999999998855543222 57899999999998533323322222
Q ss_pred C---------CCHHHHHHHHHHh
Q 009845 398 Q---------KSKLEWENALENL 411 (524)
Q Consensus 398 ~---------~~~~~~~~~l~~l 411 (524)
+ -+.-+|+.++.+.
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred cccccccCCCCCCccHHHHHHHH
Confidence 1 1345788887764
No 220
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.20 E-value=0.0011 Score=62.64 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=41.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
..+.++|.|.+|+|||+|+..+++.++.+|...+++..+.+.. ....++.+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHh
Confidence 3568999999999999999999999887777777777565543 335555555544
No 221
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.16 E-value=0.0013 Score=61.77 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=29.0
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|..+|..+-+...++.|+|++|+|||+|+.+++...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3445565555567899999999999999999998553
No 222
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0011 Score=66.68 Aligned_cols=49 Identities=31% Similarity=0.247 Sum_probs=34.5
Q ss_pred CCccccchh---hhhHHHhhccCC-------CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSR---IEEIKSLLCIGL-------PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~---l~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+.-|-|+. ++++.++|..+. .=++-|.++||||.|||-||++++-+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 345566654 555556665332 1167899999999999999999987643
No 223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0077 Score=55.31 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=93.7
Q ss_pred CCccccchhhhh---HHHhhccC----CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 187 NGFVGLNSRIEE---IKSLLCIG----LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 187 ~~~vGR~~~l~~---l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
+..||.+..... |...|..+ .-..+-|..+|++|.|||.+|+++++..... ++. -....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-----~l~---------vkat~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-----LLL---------VKATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-----eEE---------echHH
Confidence 456666554332 33444322 2347889999999999999999999875432 221 01111
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--------------HHHHHhcCCCCC--CCCcEEE
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--------------QLEYLTGGLDQF--GPGSRLI 323 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~~~~il 323 (524)
+.... .+... .+..+...+.-+.-+++++||.++... .+..|+..+... +.|...|
T Consensus 187 liGeh---VGdga-----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 187 LIGEH---VGDGA-----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHH---hhhHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 21111 11110 012222233334579999999986432 245555555422 3344445
Q ss_pred EEeCChhhHHH-hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC
Q 009845 324 ITTRDKQVLDD-FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN 385 (524)
Q Consensus 324 iTsR~~~~~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 385 (524)
-.|.+...+.. ........++..--+.+|-..++...+-.-..+.. .-.+.++.+++|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 55555544322 11111156777777889999988887733222221 1245667777776
No 224
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.12 E-value=0.033 Score=55.04 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=35.0
Q ss_pred hhhhhHHHhhccCC-CCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 194 SRIEEIKSLLCIGL-PDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 194 ~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.-.+.|.+.+...+ +...+|+|.|.=|+|||++.+.+.+.+...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556666666443 568899999999999999999999887776
No 225
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.11 E-value=0.018 Score=58.43 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+.++.++|++|+||||++..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999988764
No 226
>PRK04328 hypothetical protein; Provisional
Probab=97.09 E-value=0.0033 Score=59.46 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=35.9
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|.++|..+-+...++.|.|++|+|||+|+.+++......-..++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455666655556789999999999999999998876444444455554
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.09 E-value=0.0022 Score=57.72 Aligned_cols=33 Identities=27% Similarity=0.127 Sum_probs=26.2
Q ss_pred EEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999887655545555654
No 228
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.08 E-value=0.0053 Score=66.24 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=78.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQ 290 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~ 290 (524)
+-+.|+|++|+|||++|+.++......| +..... ++..... +. ........+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~----------~~~~~~~---g~-----~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGS----------DFVEMFV---GV-----GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehH----------HhHHhhh---cc-----cHHHHHHHHHHHHhc
Confidence 4599999999999999999988764332 111110 1111000 00 000122233333445
Q ss_pred CccEEEecCCCCHH----------------HHHHHhcCCCCCC--CCcEEEEEeCChhhHHH-hCC--CCcceEEeCCCC
Q 009845 291 MKIFIVLDDVNKVR----------------QLEYLTGGLDQFG--PGSRLIITTRDKQVLDD-FGV--LNTNIYEVNGLE 349 (524)
Q Consensus 291 ~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~~~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~ 349 (524)
.+.+|+||+++... .+..++..+..+. .+.-+|.||.....+.. ... .-...+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 78999999996541 1233333333222 23344556665543221 111 011568888888
Q ss_pred HHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC
Q 009845 350 YHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN 385 (524)
Q Consensus 350 ~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 385 (524)
.++-.+++..+.......... ....+++.+.|.
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~---d~~~la~~t~G~ 356 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDI---DAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcC---CHHHHHhhCCCC
Confidence 888888888776443211111 123466666653
No 229
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.06 E-value=0.011 Score=61.82 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=68.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccccc-------c-eEEEEeeccccccCcCh------------HHHHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-------G-KCFMANVREESEKGGGL------------VHLREQVLSEV 268 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~-~~~~~~~~~~~~~~~~~------------~~l~~~l~~~l 268 (524)
....|+|.|+.|+|||||.+.+.......-. . ..++.--.........+ ..-.+.++..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 3457999999999999999999654432210 0 11111111000000011 23333344443
Q ss_pred ccccccc-------CCC-CchHHHHHHHhcCccEEEecCCC------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHH
Q 009845 269 LDENIKI-------RTP-DLPKYMRERLQQMKIFIVLDDVN------KVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 269 ~~~~~~~-------~~~-~~~~~l~~~l~~~~~LlVlDdv~------~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~ 334 (524)
+-..... +.. ...-.+...+-.++=+||||+-. +.+.++..+..+ + +.||+.|.++..+..
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~-Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----E-GTVLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----C-CeEEEEeCCHHHHHh
Confidence 2221111 011 12234445556788899999763 233444444443 2 458999999988776
Q ss_pred hCCCCcceEEeCC
Q 009845 335 FGVLNTNIYEVNG 347 (524)
Q Consensus 335 ~~~~~~~~~~l~~ 347 (524)
... .++.+.+
T Consensus 502 va~---~i~~~~~ 511 (530)
T COG0488 502 VAT---RIWLVED 511 (530)
T ss_pred hcc---eEEEEcC
Confidence 542 5666664
No 230
>PRK07667 uridine kinase; Provisional
Probab=97.06 E-value=0.00099 Score=60.40 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=32.4
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
++.+.+.+....+...+|+|.|++|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555555445556899999999999999999999877543
No 231
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.05 E-value=0.0016 Score=63.31 Aligned_cols=49 Identities=31% Similarity=0.295 Sum_probs=36.6
Q ss_pred hhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|..+|. .+-+..+++.|+|++|+||||||.+++......-...+|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555665 45566889999999999999999998877655544555664
No 232
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.05 E-value=0.0023 Score=57.07 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=30.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...+|++.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3569999999999999999999998876666666653
No 233
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.05 E-value=0.0016 Score=63.23 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=36.8
Q ss_pred hhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|..+|. .+-+..+++-|+|++|+||||||.+++..........+|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555665 45556789999999999999999999877655545556665
No 234
>PRK06696 uridine kinase; Validated
Probab=97.05 E-value=0.0008 Score=62.58 Aligned_cols=45 Identities=27% Similarity=0.252 Sum_probs=34.5
Q ss_pred cchhhhhHHHhhcc-CCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 192 LNSRIEEIKSLLCI-GLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 192 R~~~l~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
|...+++|...+.. ..+...+|+|.|++|+||||||+.++..+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45566666665542 3345789999999999999999999988754
No 235
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.012 Score=58.04 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=27.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
+.+++.|+|+.|+||||++..++..+...-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999887644433334443
No 236
>PHA00729 NTP-binding motif containing protein
Probab=97.04 E-value=0.0017 Score=59.38 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
-..++|+|.+|+||||||..+++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999998754
No 237
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0016 Score=59.16 Aligned_cols=50 Identities=34% Similarity=0.421 Sum_probs=36.7
Q ss_pred CccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 188 GFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..=|.+-..+++++.... +-+..+-|.++||+|+|||.||+++++.-...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 344667666777665421 23457889999999999999999999975544
No 238
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.02 E-value=0.002 Score=58.48 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 275 (524)
.+.+...+.. +.+++.|.|++|+|||+++..+...+...- ..+.+. +. -......+....+.....
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~-----ap----T~~Aa~~L~~~~~~~a~T- 72 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGL-----AP----TNKAAKELREKTGIEAQT- 72 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEE-----ES----SHHHHHHHHHHHTS-EEE-
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEE-----CC----cHHHHHHHHHhhCcchhh-
Confidence 3444445442 346899999999999999999887666542 233333 11 112222222222211100
Q ss_pred CCCCchHHHHHHH---------hcCccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 276 RTPDLPKYMRERL---------QQMKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 276 ~~~~~~~~l~~~l---------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
+...+.... ..+.-+||+|++.. ...+..++.... ..+.++|+.--..
T Consensus 73 ----i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 73 ----IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp ----HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred ----HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 000000000 22346999999954 445666665544 2477888776544
No 239
>PRK10867 signal recognition particle protein; Provisional
Probab=97.02 E-value=0.026 Score=57.41 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...++.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998876655
No 240
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0071 Score=60.07 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=46.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccccc--ceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC-CchHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFE--GKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP-DLPKYMRE 286 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~ 286 (524)
..+++++|++|+||||++..++......+. .+.++. .... . .+..+-+..+...++......... ++...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~--R-~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~- 211 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSY--R-IGGHEQLRIFGKILGVPVHAVKDGGDLQLALA- 211 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccc--c-ccHHHHHHHHHHHcCCceEecCCcccHHHHHH-
Confidence 579999999999999999999987644432 233333 1111 0 222333344444444433222222 3333332
Q ss_pred HHhcCccEEEecCC
Q 009845 287 RLQQMKIFIVLDDV 300 (524)
Q Consensus 287 ~l~~~~~LlVlDdv 300 (524)
.+.+ +-++++|..
T Consensus 212 ~l~~-~DlVLIDTa 224 (374)
T PRK14722 212 ELRN-KHMVLIDTI 224 (374)
T ss_pred HhcC-CCEEEEcCC
Confidence 3344 456779998
No 241
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.02 E-value=0.0042 Score=53.36 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=58.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC-CchHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP-DLPKYMRER 287 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~ 287 (524)
...+++|.|+.|.|||||++.++..... ..+.+++.......-. .. .+.. ...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~-~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYF-EQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEE-cc------------------CCHHHHHHHHHHHH
Confidence 4569999999999999999998876543 2344444321100000 00 1111 122335566
Q ss_pred HhcCccEEEecCCC---CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHH
Q 009845 288 LQQMKIFIVLDDVN---KVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 288 l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~ 334 (524)
+..++-++++|+-. +....+.+...+... +..||++|.+......
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 67788899999983 333323332222211 2468888887765543
No 242
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.02 E-value=0.0029 Score=65.02 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=56.0
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc-
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK- 274 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~- 274 (524)
+.+|...|..+-....++.|.|++|+|||||+.+++......-...+|+. .. .....+... +..++.....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~E------es~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GE------ESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cc------ccHHHHHHH-HHHcCCChhcE
Confidence 45666777655455779999999999999999999987764433445554 21 122233222 2333321111
Q ss_pred -cCCCCchHHHHHHH-hcCccEEEecCCC
Q 009845 275 -IRTPDLPKYMRERL-QQMKIFIVLDDVN 301 (524)
Q Consensus 275 -~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 301 (524)
.........+.+.+ +.++-++|+|.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 11111223333333 3467799999983
No 243
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.00 E-value=0.0024 Score=59.62 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=32.5
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
.|...+..+-+...++.|.|++|+||||||.+++.....+-...+++.
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 344444433345669999999999999999888776543334445554
No 244
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.97 E-value=0.00052 Score=59.08 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=29.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..+|.|+|.+|+||||||+.+.+++........++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358999999999999999999999887765555554
No 245
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0042 Score=65.29 Aligned_cols=151 Identities=21% Similarity=0.171 Sum_probs=83.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
..+.+.++||+|+|||.||++++......|-.... . ++....+ +.. .......+....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~----------~l~sk~v---Ges-----ek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG----S----------ELLSKWV---GES-----EKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----H----------HHhcccc---chH-----HHHHHHHHHHHH
Confidence 45689999999999999999999965544321110 0 1111111 000 001233334444
Q ss_pred hcCccEEEecCCCCH-------------HHHHHHhcCCCCCC--CCcEEEEEeCChhhHHH-h----CCCCcceEEeCCC
Q 009845 289 QQMKIFIVLDDVNKV-------------RQLEYLTGGLDQFG--PGSRLIITTRDKQVLDD-F----GVLNTNIYEVNGL 348 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~~~~iliTsR~~~~~~~-~----~~~~~~~~~l~~L 348 (524)
+..+++|++|+++.. ..+..++..+.... .+..||-+|.....+.. + ..+ ..+.+++-
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd--~~i~v~~p 410 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFD--RLIYVPLP 410 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccc--eEeecCCC
Confidence 578999999999532 22334444333222 23334445544433321 1 123 67899999
Q ss_pred CHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC
Q 009845 349 EYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG 384 (524)
Q Consensus 349 ~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 384 (524)
+.++..+.|..+......+ -...-....+++.+.|
T Consensus 411 d~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 411 DLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred CHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 9999999999988533322 0112234455555665
No 246
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.95 E-value=0.0061 Score=54.57 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=64.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChH------HHHHHHHHhhccccc------ccC
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLV------HLREQVLSEVLDENI------KIR 276 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~------~l~~~l~~~l~~~~~------~~~ 276 (524)
...+++|.|+.|.|||||++.++-.... ..+.+++.... ... .... ....+++..++.... ..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4569999999999999999999876543 34445443211 110 0111 111123333332210 011
Q ss_pred CC-CchHHHHHHHhcCccEEEecCCC---CHHHHHHHhcCCCCC-CC-CcEEEEEeCChhhHHH
Q 009845 277 TP-DLPKYMRERLQQMKIFIVLDDVN---KVRQLEYLTGGLDQF-GP-GSRLIITTRDKQVLDD 334 (524)
Q Consensus 277 ~~-~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-~~~iliTsR~~~~~~~ 334 (524)
.. ...-.+.+.+...+-++++|+-. +....+.+...+... .. +..||++|.+......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11 22334556677789999999983 233333332222211 12 5678888888765433
No 247
>PRK09354 recA recombinase A; Provisional
Probab=96.95 E-value=0.0022 Score=62.82 Aligned_cols=49 Identities=33% Similarity=0.298 Sum_probs=37.5
Q ss_pred hhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|..+|. .+-+..+++-|+|++|+||||||.+++......-...+|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34556676 55566889999999999999999999877665555566665
No 248
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.95 E-value=0.00064 Score=60.03 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+.|.|++|+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 249
>PRK07261 topology modulation protein; Provisional
Probab=96.94 E-value=0.0034 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|.|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 250
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.022 Score=51.93 Aligned_cols=147 Identities=22% Similarity=0.319 Sum_probs=80.7
Q ss_pred ccchhhhhHHHhhccC-----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 191 GLNSRIEEIKSLLCIG-----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|.+..++++++.+..+ -..++-+.++|++|.|||-||+.+++.-. ||+..+++ .+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsg--------se 216 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSG--------SE 216 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEech--------HH
Confidence 3466677766655322 13456789999999999999999998532 33332221 12
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHH----------------HHHHhcCCCCC--CCCcE
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQ----------------LEYLTGGLDQF--GPGSR 321 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~--~~~~~ 321 (524)
+.+..+.+ . .....+.+.-.-.+.+.+|+.|++++... .-+++..+..+ ....+
T Consensus 217 lvqk~ige---g-----srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 217 LVQKYIGE---G-----SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHHHhhh---h-----HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 33332221 0 00011111122246788999999864321 22344444433 24567
Q ss_pred EEEEeCChhhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 322 LIITTRDKQVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 322 iliTsR~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
||..|..-+++... ..+ ..++.++-+.+.-.+++.-+.
T Consensus 289 vimatnridild~allrpgrid--rkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRID--RKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCccc--ccccCCCCCHHHHHHHHHHhh
Confidence 77766555443321 122 557778877777677766544
No 251
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0094 Score=54.80 Aligned_cols=52 Identities=31% Similarity=0.485 Sum_probs=35.9
Q ss_pred cccchhhhhHHHhhc-----------cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEe
Q 009845 190 VGLNSRIEEIKSLLC-----------IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMAN 246 (524)
Q Consensus 190 vGR~~~l~~l~~~L~-----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 246 (524)
=|-.++++.|++... .+-+..+-|.++||+|.|||-+|++++++-. .+|+..
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirv 242 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRV 242 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEee
Confidence 355556666655332 2234567899999999999999999999743 466653
No 252
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.91 E-value=0.0039 Score=64.13 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=38.5
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
-+.+|..+|..+-....++.|.|.+|+|||||+.+++......-...+|+.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 355677777655556789999999999999999999887665434455554
No 253
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.91 E-value=0.0057 Score=54.34 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=58.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEee-cccccc-CcChHHHHHHHHHhhcccc--ccc--CCC----
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANV-REESEK-GGGLVHLREQVLSEVLDEN--IKI--RTP---- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~-~~~~~~-~~~~~~l~~~l~~~l~~~~--~~~--~~~---- 278 (524)
...+++|.|+.|+|||||.+.+... .+.+.+... ...... ..-+.. .+.+..++... ... ...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccCCCcCcCCHHH
Confidence 4569999999999999999987531 111111100 000000 000111 34445444321 111 111
Q ss_pred CchHHHHHHHhcC--ccEEEecCCC---CHHHHHHHhcCCCCC-CCCcEEEEEeCChhhHH
Q 009845 279 DLPKYMRERLQQM--KIFIVLDDVN---KVRQLEYLTGGLDQF-GPGSRLIITTRDKQVLD 333 (524)
Q Consensus 279 ~~~~~l~~~l~~~--~~LlVlDdv~---~~~~~~~l~~~~~~~-~~~~~iliTsR~~~~~~ 333 (524)
...-.+.+.+..+ +-++++|+.. +....+.+...+... ..|..||++|.+.....
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223344556667 8899999982 233223222222111 24667888898876643
No 254
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.91 E-value=0.0048 Score=54.44 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=60.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEe---eccccccC-cChHHHHHHHHHhhcccccccCCC-CchHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMAN---VREESEKG-GGLVHLREQVLSEVLDENIKIRTP-DLPKY 283 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~ 283 (524)
....++|.|+.|.|||||++.++...... .+.+++.. +.-..+.. .....+.+.+.-. .....+.. ...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 35689999999999999999998765432 22232221 00001110 0011222222110 11111111 23344
Q ss_pred HHHHHhcCccEEEecCCC---CHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 009845 284 MRERLQQMKIFIVLDDVN---KVRQLEYLTGGLDQFGPGSRLIITTRDKQVL 332 (524)
Q Consensus 284 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~ 332 (524)
+.+.+..++-++++|+-. +....+.+...+... +..+|++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 556677788999999873 223233332222211 35688888876543
No 255
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.011 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988765
No 256
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.88 E-value=0.0047 Score=54.93 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=58.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEee--ccccccCcChHHHHHHHHHhhcccccccCCC-CchHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANV--REESEKGGGLVHLREQVLSEVLDENIKIRTP-DLPKYMR 285 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~l~ 285 (524)
...+++|.|+.|+|||||++.++...... .+.+.+... .-..+. .. .+.. ...-.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~-~~------------------LSgGq~qrv~la 83 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQY-ID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEccc-CC------------------CCHHHHHHHHHH
Confidence 34699999999999999999988755432 333443211 000000 00 1111 2233455
Q ss_pred HHHhcCccEEEecCCC---CHHHHHHHhcCCCCC-CC-CcEEEEEeCChhhHHH
Q 009845 286 ERLQQMKIFIVLDDVN---KVRQLEYLTGGLDQF-GP-GSRLIITTRDKQVLDD 334 (524)
Q Consensus 286 ~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-~~~iliTsR~~~~~~~ 334 (524)
+.+..++-++++|+-. +....+.+...+... .. +..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 6667788999999983 222222222211111 12 3578888888766554
No 257
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.86 E-value=0.046 Score=59.43 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=39.4
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+.++|.+..+.++...+..-......|.|+|.+|+||+++|+.+.+.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 35679999999988887775433344568999999999999999987653
No 258
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.0083 Score=53.17 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.4
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
+.|.++|.||+||||+|++++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4788999999999999999999776653
No 259
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.83 E-value=0.026 Score=59.51 Aligned_cols=49 Identities=24% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhh
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.....++|....++++...+..-......|.|+|.+|+||+.||+.+..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 4556899999998888876653333345688999999999999999654
No 260
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.82 E-value=0.0073 Score=52.92 Aligned_cols=116 Identities=16% Similarity=0.007 Sum_probs=59.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh---hcccc--cccCCC------
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE---VLDEN--IKIRTP------ 278 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---l~~~~--~~~~~~------ 278 (524)
...|-|++..|.||||.|..++.+...+-..++++--+.... . .+-...++.+.-. ++... ...+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-P-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-c-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 357888888999999999998887655433332221111110 1 2222333332001 11100 000000
Q ss_pred -CchHHHHHHHhcCc-cEEEecCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 279 -DLPKYMRERLQQMK-IFIVLDDVN--------KVRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 279 -~~~~~l~~~l~~~~-~LlVlDdv~--------~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
+..+..++.+...+ =|||||++. +.+.+-.++.. ..++..||+|.|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 12233344444444 499999983 22333334333 356779999999873
No 261
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.81 E-value=0.0021 Score=63.93 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=56.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccc---eEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEG---KCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRE 286 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~ 286 (524)
...|.|+|+.|+||||++..+...+....+. .+.+.+..+. ....... ....................++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~~-~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIET-ISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----ecccccc-ccceeeeeeccccccCHHHHHHH
Confidence 4699999999999999999998876543321 2222211111 1111000 00000111111111245677888
Q ss_pred HHhcCccEEEecCCCCHHHHHHHhcC
Q 009845 287 RLQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 287 ~l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
.|+..|-.+++..+.+.+.....+..
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 89999999999999988877655543
No 262
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.026 Score=57.53 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+++.++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987765
No 263
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.80 E-value=0.036 Score=54.13 Aligned_cols=48 Identities=31% Similarity=0.229 Sum_probs=33.7
Q ss_pred eEEeCCCCHHHHHHHHHhhhcCCCCCC-chHHHHHHHHHHHhCCChHHH
Q 009845 342 IYEVNGLEYHEALELFCNFAFKHDYCL-DDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 342 ~~~l~~L~~~ea~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 389 (524)
.+++++++.+|+..++....-..-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763322111 233345566777779999755
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.79 E-value=0.0082 Score=53.64 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=59.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhh---ccc------------cc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEV---LDE------------NI 273 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~~------------~~ 273 (524)
...+++|.|+.|+|||||++.++-..... .+.+++... . +......+-..+ ... ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~-~-------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~ 97 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGV-P-------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCE-E-------HHHHHHHHHhhEEEEccCCeeecccHHHhhcc
Confidence 35689999999999999999998754332 333433311 0 000000000000 000 00
Q ss_pred ccCCC-CchHHHHHHHhcCccEEEecCCC---CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHH
Q 009845 274 KIRTP-DLPKYMRERLQQMKIFIVLDDVN---KVRQLEYLTGGLDQFGPGSRLIITTRDKQVLD 333 (524)
Q Consensus 274 ~~~~~-~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~ 333 (524)
..+.. ...-.+.+.+-.++-++++|+.. +....+.+...+.....+..||++|.+.....
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 00111 22234455567788999999983 22222222222211123677888888887654
No 265
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.79 E-value=0.00087 Score=64.41 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=70.3
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
..+.-.....+.+.++|...-...+.+.|+|+.|+||||++..+...+...-...+-+.+..+..-. . ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~---------~-~~ 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP---------G-PN 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S---------C-SS
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec---------c-cc
Confidence 3343334444555555553323467999999999999999999988766551222333322111100 0 00
Q ss_pred hhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEE-EEEeCCh
Q 009845 267 EVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRL-IITTRDK 329 (524)
Q Consensus 267 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~i-liTsR~~ 329 (524)
....... .........+...|+..+=.++++++.+.+....+... ..|..+ +-|....
T Consensus 174 ~~~~~~~-~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 174 QIQIQTR-RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEEEEE-TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred eEEEEee-cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0000000 12226778888899999999999999888777663332 345566 5554433
No 266
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.79 E-value=0.017 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999887654
No 267
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.041 Score=50.55 Aligned_cols=50 Identities=28% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..+=|.+..+++|.+.+-. +-..++-+..+||||.|||-+|++.+.+-..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 3455667777777654421 2234567899999999999999998776443
No 268
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.78 E-value=0.0098 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred EEEEeccCcchhhHHHHHHhhhhccc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 269
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=0.0039 Score=65.18 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 207 LPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 207 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+..+++.++|++|+||||||.-++++.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 4558999999999999999999998863
No 270
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.025 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|+|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.77 E-value=0.0013 Score=67.88 Aligned_cols=51 Identities=27% Similarity=0.312 Sum_probs=42.0
Q ss_pred CCccccchhhhhHHHhh----ccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 187 NGFVGLNSRIEEIKSLL----CIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L----~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++|.+..+++|.+.| .......+++.++||+|+|||+||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 46899999999999888 2234457899999999999999999998865443
No 272
>PRK08118 topology modulation protein; Reviewed
Probab=96.77 E-value=0.001 Score=58.76 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|.|.|++|+||||||+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998754
No 273
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.77 E-value=0.0053 Score=63.68 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=61.1
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 275 (524)
++.+..++.. ...++.|+|+.|+||||+...+.+.+.......+-+.+-.+..- .++ .+.. ...
T Consensus 231 ~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~---v~~ 294 (486)
T TIGR02533 231 LSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQ---VNP 294 (486)
T ss_pred HHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEE---Ecc
Confidence 4445554432 34589999999999999999888776543223333332111110 010 1110 011
Q ss_pred CC-CCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcC
Q 009845 276 RT-PDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 276 ~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
.. ......++..|+..+=.|++.++.+.+........
T Consensus 295 ~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 295 KIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred ccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHH
Confidence 11 24667888999999999999999988876655443
No 274
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.76 E-value=0.0047 Score=54.32 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=62.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC-CchHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP-DLPKYMRER 287 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~ 287 (524)
....++|.|+.|.|||||.+.++-.... ..+.+++.... ... ......... .++.- ...+.. ...-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~~~--~~~~~~~~~---~i~~~-~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-VSF--ASPRDARRA---GIAMV-YQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-CCc--CCHHHHHhc---CeEEE-EecCHHHHHHHHHHHH
Confidence 3569999999999999999999876543 34445544211 110 111111111 11110 001111 233345566
Q ss_pred HhcCccEEEecCCC---CHHHHHHHhcCCCCC-CCCcEEEEEeCChhhHHH
Q 009845 288 LQQMKIFIVLDDVN---KVRQLEYLTGGLDQF-GPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 288 l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~~~~iliTsR~~~~~~~ 334 (524)
+-..+-++++|+-. +....+.+...+... ..+..||++|.+......
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67788999999983 222222222222111 236678889988765443
No 275
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0068 Score=53.76 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=60.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc---------cCCC-
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK---------IRTP- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---------~~~~- 278 (524)
...+++|.|+.|.|||||.+.++..... ..+.+++.... ... ...... .....-+.....- .+..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~--~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD--LDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh--cCHHHH-HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 4569999999999999999999876543 23444443211 000 000010 0000000000000 0001
Q ss_pred CchHHHHHHHhcCccEEEecCCC---CHH---HHHHHhcCCCCCCCCcEEEEEeCChhhHH
Q 009845 279 DLPKYMRERLQQMKIFIVLDDVN---KVR---QLEYLTGGLDQFGPGSRLIITTRDKQVLD 333 (524)
Q Consensus 279 ~~~~~l~~~l~~~~~LlVlDdv~---~~~---~~~~l~~~~~~~~~~~~iliTsR~~~~~~ 333 (524)
...-.+...+..++-+++||+-. +.. .+..++..+. .+..||++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHH
Confidence 12233555667788999999983 222 2333333332 3467888888876654
No 276
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.75 E-value=0.0024 Score=66.62 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=40.2
Q ss_pred hhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 194 SRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 194 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
.-+.+|..+|..+-....++.|.|++|+|||||+.+++.....+-..++++.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456777788766666889999999999999999999988765544455554
No 277
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.75 E-value=0.0079 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 278
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.021 Score=55.60 Aligned_cols=71 Identities=27% Similarity=0.335 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHh
Q 009845 162 EAKLVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 162 ~~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~ 231 (524)
++.+.+.+-.+|..+ ++-..=+.+.|..+..+-|++..-. ....=+-|.++||||.|||-||++++
T Consensus 191 d~~Lve~lerdIl~~----np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 191 DADLVEALERDILQR----NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred hHHHHHHHHHHHhcc----CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHH
Confidence 445554444444433 3333446778888877777764421 11234679999999999999999999
Q ss_pred hhhcc
Q 009845 232 NLISW 236 (524)
Q Consensus 232 ~~~~~ 236 (524)
-.-..
T Consensus 267 TEc~t 271 (491)
T KOG0738|consen 267 TECGT 271 (491)
T ss_pred HhhcC
Confidence 87553
No 279
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.73 E-value=0.054 Score=54.82 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+|.++|++|+||||++..++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998766544
No 280
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.72 E-value=0.0045 Score=60.34 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.6
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhh
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
...|..+|..+-+...++-|+|++|+|||+|+.+++-
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 3456667765555678999999999999999999875
No 281
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.72 E-value=0.0022 Score=65.16 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=38.6
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 36999999999998877633 36899999999999999999986543
No 282
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.71 E-value=0.0035 Score=62.26 Aligned_cols=102 Identities=15% Similarity=0.265 Sum_probs=58.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
..+-+=|||+.|.|||.|+-.+++.+...-..++.+. .-..++...+-..- ........+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~-------~~~~~l~~va~~l 124 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLR-------GQDDPLPQVADEL 124 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHh-------CCCccHHHHHHHH
Confidence 4678999999999999999999997654322222222 11222333322211 1112345556667
Q ss_pred hcCccEEEecCC--CCHHH---HHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 289 QQMKIFIVLDDV--NKVRQ---LEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 289 ~~~~~LlVlDdv--~~~~~---~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
.++-.||+||++ .+..+ +..++..+. ..|. +||+|.|.
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 778889999998 33332 444444432 3455 55555554
No 283
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.70 E-value=0.0033 Score=62.60 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=56.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccccc-ceE-EEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKC-FMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
...+.|+|+.|+||||++..+...+....+ ..+ -+.+-.+..-. ....+.. ..+ .....+.......++..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~--~~q---~evg~~~~~~~~~l~~a 221 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLP--PAQ---SQIGRDVDSFANGIRLA 221 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeec--ccc---cccCCCccCHHHHHHHh
Confidence 347899999999999999998877654322 222 22221111100 0000000 000 01111112456778889
Q ss_pred HhcCccEEEecCCCCHHHHHHHhcC
Q 009845 288 LQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
|+..|=.|+++++.+.+..+..+..
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHHH
Confidence 9999999999999998887765443
No 284
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.69 E-value=0.013 Score=68.20 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+-|.++||+|+|||.||+++|....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999998643
No 285
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.68 E-value=0.0012 Score=55.25 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.5
Q ss_pred EEEeccCcchhhHHHHHHhhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 286
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0097 Score=55.50 Aligned_cols=51 Identities=39% Similarity=0.445 Sum_probs=38.5
Q ss_pred CccccchhhhhHHHhhccC-----------CCCceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 188 GFVGLNSRIEEIKSLLCIG-----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
..=|.+..+++|.+....+ -...+-|.++|+||.|||-||++++++-...|
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3447888888888765422 23467788999999999999999999765543
No 287
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.68 E-value=0.0033 Score=59.61 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=28.6
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..|.++|..+-....+.=|+|++|+|||+|+.+++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 3566667544444679999999999999999988754
No 288
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.013 Score=54.92 Aligned_cols=174 Identities=17% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcC
Q 009845 187 NGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGG 256 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 256 (524)
...-|.+...+.|.+.... ....-+-|.++||+|.|||.||++++-.... .|+.. .
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFSv---------S 198 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFSV---------S 198 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEEe---------e
Confidence 4567788888877765421 1223678999999999999999999876432 23321 1
Q ss_pred hHHHHHHHHHhhcccccccCCCCchHHHHHHH-hcCccEEEecCCCCH---------HHHHH----HhcCCC---CCCCC
Q 009845 257 LVHLREQVLSEVLDENIKIRTPDLPKYMRERL-QQMKIFIVLDDVNKV---------RQLEY----LTGGLD---QFGPG 319 (524)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~~----l~~~~~---~~~~~ 319 (524)
..++....+ +.. ..+...+.+.. ++++.+|++|.++.. +..+. ++-... ....|
T Consensus 199 SSDLvSKWm---GES------EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 199 SSDLVSKWM---GES------EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred hHHHHHHHh---ccH------HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 112222221 111 11333333322 468999999999533 22222 221221 12234
Q ss_pred cEEEEEeCChhhHHHhCC-CCcceEEeCCCCHHHHH-HHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 320 SRLIITTRDKQVLDDFGV-LNTNIYEVNGLEYHEAL-ELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 320 ~~iliTsR~~~~~~~~~~-~~~~~~~l~~L~~~ea~-~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..||-.|.-+.++...-. .....+.+ ||+...|+ .+|.-+++.. +.....+-.+++.+++.|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 444445555544332110 00023333 55555555 4555555332 23333445677788887764
No 289
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0043 Score=58.91 Aligned_cols=48 Identities=31% Similarity=0.335 Sum_probs=37.3
Q ss_pred HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEe
Q 009845 199 IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMAN 246 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 246 (524)
|..+|..+-+..+++=|+|+.|+||||||.+++-.....-...+|++.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 444555555668899999999999999999988776666667788873
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.64 E-value=0.0064 Score=58.61 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++++|+|++|+||||++..++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999998876543
No 291
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.63 E-value=0.0014 Score=53.86 Aligned_cols=28 Identities=39% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEeccCcchhhHHHHHHhhhhcccccc
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWEFEG 240 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 240 (524)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6899999999999999999988877754
No 292
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.62 E-value=0.017 Score=52.83 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=36.3
Q ss_pred CchHHHHHHHhcCccEEEecCC----C--CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHh
Q 009845 279 DLPKYMRERLQQMKIFIVLDDV----N--KVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDF 335 (524)
Q Consensus 279 ~~~~~l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~ 335 (524)
+....+.+.+-..|-+|+.|+- + +...+-.++..+.. ..|..||+.|.+..++..+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC
Confidence 4455677888899999999976 2 12223333332211 2367899999999887754
No 293
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.014 Score=51.81 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=60.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc-----------cCC
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK-----------IRT 277 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-----------~~~ 277 (524)
....++|.|+.|.|||||++.++..... ..+.+++.... ... .. ...... ..-+.....- .+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~~--~~-~~~~~~-i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKD-IKK--EP-EEVKRR-IGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-ccc--ch-Hhhhcc-EEEEecCCccccCCcHHHHhhcCH
Confidence 3569999999999999999998875432 23334433110 000 00 000000 0000000000 011
Q ss_pred C-CchHHHHHHHhcCccEEEecCCC---CHHH---HHHHhcCCCCCCCCcEEEEEeCChhhHHH
Q 009845 278 P-DLPKYMRERLQQMKIFIVLDDVN---KVRQ---LEYLTGGLDQFGPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 278 ~-~~~~~l~~~l~~~~~LlVlDdv~---~~~~---~~~l~~~~~~~~~~~~iliTsR~~~~~~~ 334 (524)
. ...-.+...+..++-++++|+-. +... +..++..+. ..|..+|++|.+......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHH
Confidence 1 12334556677889999999983 2222 222222222 235678888888765553
No 294
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.62 E-value=0.014 Score=51.26 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=37.2
Q ss_pred CchHHHHHHHhcCccEEEecCC----CCHHHHH--HHhcCCCCCCCCcEEEEEeCChhhHHHhC
Q 009845 279 DLPKYMRERLQQMKIFIVLDDV----NKVRQLE--YLTGGLDQFGPGSRLIITTRDKQVLDDFG 336 (524)
Q Consensus 279 ~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~--~l~~~~~~~~~~~~iliTsR~~~~~~~~~ 336 (524)
+....+.+.+-++|-+|+-|+- +..-.++ .++..+. ..|..||++|.+..+...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 4455677777889999999965 3322222 2223332 45889999999998877653
No 295
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.61 E-value=0.015 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+..|.|++|+|||+|+.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999987643
No 296
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0085 Score=53.37 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+++|.|++|+||||+|+.++..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35699999999999999999999887543
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.60 E-value=0.0028 Score=60.27 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=31.2
Q ss_pred cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 205 IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 205 ~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
.+-+...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34445789999999999999999999876544444556665
No 298
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.60 E-value=0.0011 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.1
Q ss_pred EEEeccCcchhhHHHHHHhhhhcccc
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
|.|+|++|+|||+||..++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999988766543
No 299
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.59 E-value=0.012 Score=59.66 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=70.0
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 275 (524)
.+.+.+++. ....++.++||.|+||||....+...+.......+-+.+--+... .++ .+-..+.
T Consensus 247 ~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~--~gI-----------~Q~qVN~ 310 (500)
T COG2804 247 LARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL--PGI-----------NQVQVNP 310 (500)
T ss_pred HHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec--CCc-----------ceeeccc
Confidence 344444444 346799999999999999999988877665554443332111110 111 1111111
Q ss_pred CCC-CchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeC
Q 009845 276 RTP-DLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTR 327 (524)
Q Consensus 276 ~~~-~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR 327 (524)
... .....++..|++-|=+|++..+.|.+..+...... -.++.++||=
T Consensus 311 k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlSTl 359 (500)
T COG2804 311 KIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLSTL 359 (500)
T ss_pred ccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeeec
Confidence 112 56778899999999999999999988877666552 2345665553
No 300
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.59 E-value=0.0016 Score=59.11 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=23.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhccc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987644
No 301
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.59 E-value=0.0089 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+|.|.|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.58 E-value=0.007 Score=57.62 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=63.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc-----CCCCchHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI-----RTPDLPKYM 284 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~~~~~~~~l 284 (524)
.+.++|.|++|+|||||.+.++..+... .+.+++... ..... ....++... ...+....... +......-+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~-d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV-DERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc-hhHHHHHHH-hcccccccccccccccccchHHHHH
Confidence 4689999999999999999999877644 223333211 11000 011122111 11111111111 001111223
Q ss_pred HHHH-hcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 285 RERL-QQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 285 ~~~l-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
...+ ...+-++++|+....+.+..+...+. .|..+|+||.+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 3333 36789999999987777776665543 47789999987655
No 303
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.46 Score=46.02 Aligned_cols=167 Identities=10% Similarity=0.035 Sum_probs=91.2
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc---------cc-ceEEEEeeccccccCcChHHHHHHHH
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE---------FE-GKCFMANVREESEKGGGLVHLREQVL 265 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~l~ 265 (524)
++.+.+.+..+ .-.++..++|+.|+||+++|..+++.+-.. .+ ...++. ..+ ..-.+.++. ++.
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g---~~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD---KDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC---CcCCHHHHH-HHH
Confidence 34455555422 236788899999999999999998875211 12 111121 001 101222222 222
Q ss_pred HhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCCcce
Q 009845 266 SEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLNTNI 342 (524)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~~~~ 342 (524)
..+..... -.+.+-++|+|+++.. .....++..+...++.+.+|++|.+. .+++.. ...+..
T Consensus 79 ~~~~~~~~--------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI-~SRc~~ 143 (299)
T PRK07132 79 NKLYFSSF--------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI-VSRCQV 143 (299)
T ss_pred HHhccCCc--------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH-HhCeEE
Confidence 22211110 0135668889998654 33555666655545667776655443 333322 122388
Q ss_pred EEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 009845 343 YEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRV 391 (524)
Q Consensus 343 ~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 391 (524)
+++.+++.++..+.+.... . + .+.+..++..++|.=-|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999998887641 1 1 13355566666662244444
No 304
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0095 Score=55.55 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=70.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccc-cCcChHHHHHHHHHhhcccc-------cccCCC-C
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESE-KGGGLVHLREQVLSEVLDEN-------IKIRTP-D 279 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~l~~~~-------~~~~~~-~ 279 (524)
...+++|+|.+|+|||||++.+..-...... .+++.... ... ......+...+++..++... ...+.. .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~-i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKD-ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcc-hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3569999999999999999999886654433 33333111 100 01223344455555544221 111222 3
Q ss_pred chHHHHHHHhcCccEEEecCCCCH------HHHHHHhcCCCCCCCCcEEEEEeCChhhHHHh
Q 009845 280 LPKYMRERLQQMKIFIVLDDVNKV------RQLEYLTGGLDQFGPGSRLIITTRDKQVLDDF 335 (524)
Q Consensus 280 ~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~ 335 (524)
..-.+.+.+.-++-++|.|+..+. .++-.++..+.. ..|...++.|.+-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 344577788899999999998332 222333322221 2356677778877666553
No 305
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.011 Score=55.75 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
.+..++|||++|.|||-||+.++..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 367899999999999999999999876554
No 306
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.56 E-value=0.0027 Score=57.22 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=53.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccc--ccc-cCCCCchHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDE--NIK-IRTPDLPKYMRE 286 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~-~~~~~~~~~l~~ 286 (524)
...++|.|+.|+|||||++.++..+... ...+.+.+..+.... . .... ++... ... .......+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999988766533 223333221111100 0 0000 01100 000 111245667777
Q ss_pred HHhcCccEEEecCCCCHHHHHHH
Q 009845 287 RLQQMKIFIVLDDVNKVRQLEYL 309 (524)
Q Consensus 287 ~l~~~~~LlVlDdv~~~~~~~~l 309 (524)
.++..+-.++++++.+.+.+..+
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHH
Confidence 88888999999999888765533
No 307
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.56 E-value=0.038 Score=57.90 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=39.4
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...++|....++++.+.+..-......|.|+|.+|+||+.+|+.+.+.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 356999999999998877543344568999999999999999998764
No 308
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.013 Score=56.69 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=27.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG 240 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 240 (524)
..+-|.++||+|+|||-||+.++.+....|-+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 35679999999999999999999987766643
No 309
>PRK10436 hypothetical protein; Provisional
Probab=96.53 E-value=0.011 Score=60.85 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=60.7
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK 274 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 274 (524)
.++.+..++.. ....|.|+|+.|+||||....+...+.......+-+.+--+. .+. . ..+.. .+
T Consensus 206 ~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~-----~l~----g-i~Q~~---v~ 269 (462)
T PRK10436 206 QLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI-----PLA----G-INQTQ---IH 269 (462)
T ss_pred HHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc-----cCC----C-cceEe---eC
Confidence 34455555542 345999999999999998877766654332222222211111 000 0 01111 11
Q ss_pred cCC-CCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcC
Q 009845 275 IRT-PDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 275 ~~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
... ......++..|+..|=.|++.++.+.+..+..+..
T Consensus 270 ~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 270 PKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred CccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 111 25778889999999999999999988877654443
No 310
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.032 Score=55.57 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=81.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.|--.++||||.|||++..++++.+. |+ ++.-.+.+... -.+ ++.++.. .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~----n~d-Lr~LL~~---------------------t 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKL----DSD-LRHLLLA---------------------T 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccC----cHH-HHHHHHh---------------------C
Confidence 57788999999999999999998764 22 33332222211 112 3333322 1
Q ss_pred cCccEEEecCCCCHH--------------------HHHHHhcCCCC---CCCCcEEE-EEeCChhhHHH----h-CCCCc
Q 009845 290 QMKIFIVLDDVNKVR--------------------QLEYLTGGLDQ---FGPGSRLI-ITTRDKQVLDD----F-GVLNT 340 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~--------------------~~~~l~~~~~~---~~~~~~il-iTsR~~~~~~~----~-~~~~~ 340 (524)
..+-+|||.|++..- .+.-|+..+.. ...+-||| +||...+-+.. . ..+
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD-- 362 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD-- 362 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce--
Confidence 235567777774221 01223333321 11133564 56655533211 1 122
Q ss_pred ceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 341 NIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 341 ~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
..+.+.--+.+.-..|+.+.+.... +. .++.+|.+...+.-+.=..++..|
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 4678888889988999998885433 22 345555555556555445555444
No 311
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.52 E-value=0.013 Score=57.80 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=29.0
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..|..+|..+-+...+.-|+|++|+|||+|+.+++-.
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHH
Confidence 3455667655556789999999999999999998743
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.51 E-value=0.004 Score=58.47 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=37.2
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
+..|.++|..+-+...++.|.|++|+|||+||.+++.....+-..++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34556667666566889999999999999999998876544445556665
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.51 E-value=0.0019 Score=47.51 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 314
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.50 E-value=0.042 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+++.|++|+||||++..++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 469999999999999999999877654
No 315
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.04 Score=57.79 Aligned_cols=175 Identities=18% Similarity=0.134 Sum_probs=92.1
Q ss_pred ccccchhhhhHHHhhccCC-----------CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcCh
Q 009845 189 FVGLNSRIEEIKSLLCIGL-----------PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGL 257 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 257 (524)
+=|..+..+.|++.+..++ .-..-|.++|++|+|||-||.+++....-+ |+. + .+.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v-------KGP 735 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V-------KGP 735 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e-------cCH
Confidence 3355555555555554322 113468899999999999999988764322 333 1 111
Q ss_pred HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-------------HHHHHHhcCCCCC--CCCcEE
Q 009845 258 VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------------RQLEYLTGGLDQF--GPGSRL 322 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~~~~i 322 (524)
+++...+ |... ........+...-+|++|++|++++. ..+..++..+... -.|..|
T Consensus 736 -ElL~KyI---GaSE-----q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 -ELLSKYI---GASE-----QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred -HHHHHHh---cccH-----HHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 2222222 2211 12334445555679999999999654 2355666555421 234455
Q ss_pred E-EEeCChhhHHHhCCCC-c-ceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 009845 323 I-ITTRDKQVLDDFGVLN-T-NIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLA 388 (524)
Q Consensus 323 l-iTsR~~~~~~~~~~~~-~-~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 388 (524)
+ .|||...+-..+-.++ . ..+.-+.-+..+-.++|....-....+. ....+.++.++.|..-|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 4 4666654333221111 0 2333334455666666665542211111 12356678888887654
No 316
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.48 E-value=0.002 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.1
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987644
No 317
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.47 E-value=0.007 Score=59.19 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=61.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
....++|+|+.|+|||||++.+...+.... ..+.+.+..+.......... +. ..............+.+...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~----l~--~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH----LF--YSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE----EE--ecCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999987765432 23333322221111000000 00 000001111225667788888
Q ss_pred hcCccEEEecCCCCHHHHHHHhcCCCCCCCCcE-EEEEeCChh
Q 009845 289 QQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSR-LIITTRDKQ 330 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~-iliTsR~~~ 330 (524)
+..+-.+++|++...+.++. +.... .|.. ++.|+....
T Consensus 216 r~~pd~ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDF-IRAVN---TGHPGSITTLHAGS 254 (308)
T ss_pred cCCCCeEEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeCCC
Confidence 99999999999988766543 33322 2322 466665543
No 318
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.47 E-value=0.0054 Score=56.85 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=29.5
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.++...+....++..+|+|+|+||.|||||..++...+...
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444334567899999999999999999998887654
No 319
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.0099 Score=55.34 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=35.7
Q ss_pred chHHHHHHHhcCccEEEecCC----C--CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHH
Q 009845 280 LPKYMRERLQQMKIFIVLDDV----N--KVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 280 ~~~~l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~ 334 (524)
....+.+.|..++=|++||+- | ....+-.++..+. ..|..||++|.+-.....
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 345677888999999999986 2 1223344444444 238899999998766544
No 320
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.47 E-value=0.0098 Score=49.14 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=51.8
Q ss_pred cEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccC
Q 009845 13 DVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKD 76 (524)
Q Consensus 13 dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 76 (524)
.|||.|+ .| ..++..+...|+..|+.+.+=......|..+.+.+.+.+.++..+|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899998 66 5679999999998888765444456899999999999999999999999984
No 321
>PRK08233 hypothetical protein; Provisional
Probab=96.46 E-value=0.0023 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 322
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.46 E-value=0.0069 Score=53.91 Aligned_cols=119 Identities=14% Similarity=0.013 Sum_probs=60.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHH--Hh--hccccc-ccCCC------
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVL--SE--VLDENI-KIRTP------ 278 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~--l~~~~~-~~~~~------ 278 (524)
...|.|+|..|-||||.|...+.+...+-..+.++--+..... .+-...+..+. .- .+.... .....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 4689999999999999999988775544333333322221111 22223333211 00 111000 00000
Q ss_pred --CchHHHHHHHhcCc-cEEEecCCCCH-----HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 279 --DLPKYMRERLQQMK-IFIVLDDVNKV-----RQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 279 --~~~~~l~~~l~~~~-~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
+..+..++.+...+ -|||||++... -..+.+...+....++..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233344444444 49999999321 122333333333356779999999873
No 323
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.45 E-value=0.013 Score=61.24 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=39.6
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...++|....++++.+.+..-......|.|+|.+|+||+.+|+.+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999999887543344568999999999999999998875
No 324
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.44 E-value=0.0035 Score=52.51 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=29.4
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++.++-..|...-+...++.+.|..|.|||||++.+++.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444443223456899999999999999999998754
No 325
>PRK06762 hypothetical protein; Provisional
Probab=96.44 E-value=0.0025 Score=56.24 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+|+|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 326
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.42 E-value=0.0061 Score=58.05 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+.|.|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 479999999999999999999876653
No 327
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.40 E-value=0.014 Score=51.94 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=59.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccc---------cCCC-
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIK---------IRTP- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---------~~~~- 278 (524)
...+++|.|+.|.|||||.+.++-.... ..+.+.+... .... .........+ .-+.....- .+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGA-DISQ--WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCE-Eccc--CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHH
Confidence 3569999999999999999999875433 2333444311 0000 0111111100 000000000 0111
Q ss_pred CchHHHHHHHhcCccEEEecCCC---CHHH---HHHHhcCCCCCCCCcEEEEEeCChhhHH
Q 009845 279 DLPKYMRERLQQMKIFIVLDDVN---KVRQ---LEYLTGGLDQFGPGSRLIITTRDKQVLD 333 (524)
Q Consensus 279 ~~~~~l~~~l~~~~~LlVlDdv~---~~~~---~~~l~~~~~~~~~~~~iliTsR~~~~~~ 333 (524)
...-.+.+.+..++-+++||+-. +... +..++..+. ..+..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 22334555666788899999983 2222 223332222 23667888888876553
No 328
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.40 E-value=0.084 Score=54.22 Aligned_cols=71 Identities=25% Similarity=0.286 Sum_probs=46.6
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc-ccccceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS-WEFEGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
..|...-+..|..++. +-....++.|.|.||+|||++|..++.... .+-..++|++ +. .+...+...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-lE------m~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-LE------MSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-CC------CCHHHHHHHHHHH
Confidence 4555555666666665 444567999999999999999999997654 2222344443 21 3455666666654
No 329
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.39 E-value=0.011 Score=55.55 Aligned_cols=93 Identities=12% Similarity=0.207 Sum_probs=59.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH---HHHHHhhcccccccCCCCchHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR---EQVLSEVLDENIKIRTPDLPKYMR 285 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~l~~~~~~~~~~~~~~~l~ 285 (524)
....|.|+||.|+||||-.....+.+-.+++..+.-. . ..+.-+. +.++.+ .....+.......++
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-----E---DPIE~vh~skkslI~Q---REvG~dT~sF~~aLr 192 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-----E---DPIEYVHESKKSLINQ---REVGRDTLSFANALR 192 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-----c---CchHhhhcchHhhhhH---HHhcccHHHHHHHHH
Confidence 3569999999999999777666665555555444332 0 1122221 223222 122222335677899
Q ss_pred HHHhcCccEEEecCCCCHHHHHHHhcC
Q 009845 286 ERLQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 286 ~~l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
..|+.-|=+|++-+..+.+.+..-+..
T Consensus 193 aALReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 193 AALREDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred HHhhcCCCEEEEeccccHHHHHHHHHH
Confidence 999999999999999998887765544
No 330
>PTZ00301 uridine kinase; Provisional
Probab=96.39 E-value=0.0028 Score=57.95 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=24.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+|+|.|++|+||||||+.+..++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876443
No 331
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.38 E-value=0.0039 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 332
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.37 E-value=0.0032 Score=57.95 Aligned_cols=27 Identities=41% Similarity=0.610 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+..+|+|.|++|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 333
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.36 E-value=0.032 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+++|.|+.|+|||||++.++....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56999999999999999999987543
No 334
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.36 E-value=0.044 Score=57.23 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=39.5
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...++|....+.++...+.........|.|+|.+|+|||++|+.+.+..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 3569999999998888776444456679999999999999999877753
No 335
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.35 E-value=0.011 Score=57.53 Aligned_cols=55 Identities=31% Similarity=0.262 Sum_probs=39.1
Q ss_pred CCCCccccchhhhhH---HHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc
Q 009845 185 DFNGFVGLNSRIEEI---KSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE 239 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l---~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 239 (524)
....+||.....+.. .+++..+.-..+.+.+.|++|.|||+||..+++.+....|
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~P 79 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVP 79 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCC
Confidence 357899988776654 3455544445789999999999999999999999987655
No 336
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.34 E-value=0.0047 Score=58.97 Aligned_cols=47 Identities=32% Similarity=0.292 Sum_probs=37.3
Q ss_pred HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 199 IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
|...|..+-+..+++.|+|.+|+|||+++.+++.........++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444445566889999999999999999999998877766667765
No 337
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.02 Score=58.93 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++++|+|++|+||||++..++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 36799999999999999999998876543
No 338
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.028 Score=61.41 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=67.8
Q ss_pred CccccchhhhhHHHhhccCC------CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH
Q 009845 188 GFVGLNSRIEEIKSLLCIGL------PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
..+|-+..+..+.+.+.... .+...+.+.||.|+|||.||++++..+....+..+-++ . ....
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-m----------se~~ 631 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-M----------SEFQ 631 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-h----------hhhh
Confidence 56777777888777664221 13567889999999999999999998876666555554 1 1222
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCcc-EEEecCCCCH
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKI-FIVLDDVNKV 303 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 303 (524)
+ .+.+...++..-..+....+.+.++++|+ +|+|||++..
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2 33333333333333556678888888886 7779999543
No 339
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.30 E-value=0.011 Score=57.31 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=53.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
.+.+.|+|++|+||||+++.++..+.... ...+.+.+..+........ -.+.. ..........++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~--------v~~~~---~~~~~~~~~~l~~a 200 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV--------VQLRT---SDDAISMTRLLKAT 200 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE--------EEEEe---cCCCCCHHHHHHHH
Confidence 35788999999999999999998775432 2222233222211000000 00100 00111566788888
Q ss_pred HhcCccEEEecCCCCHHHHHHH
Q 009845 288 LQQMKIFIVLDDVNKVRQLEYL 309 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~l 309 (524)
|+..+=.||+.++.+.+.++.+
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHH
Confidence 9999999999999888765543
No 340
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.29 E-value=0.0036 Score=58.36 Aligned_cols=49 Identities=31% Similarity=0.255 Sum_probs=35.6
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
..|.++|..+-+...++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 34556665555557899999999999999999998776555 44555655
No 341
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.034 Score=58.14 Aligned_cols=176 Identities=20% Similarity=0.201 Sum_probs=92.3
Q ss_pred CCCccccchhhhhHHHhh---ccCC-------CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 186 FNGFVGLNSRIEEIKSLL---CIGL-------PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L---~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
.....|.+...+++.+.+ ..+. .-++-|.++||||.|||.||++++-...-.| +.. +
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~i----S---- 215 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSI----S---- 215 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----eec----c----
Confidence 456778887777666544 3222 2267899999999999999999988654332 110 0
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCCCCCCC
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLDQFGPG 319 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~~ 319 (524)
-.+..+... ............+..++-|+++++|.++.. ..+..++.....+..+
T Consensus 216 -GS~FVemfV--------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 216 -GSDFVEMFV--------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -chhhhhhhc--------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 001111110 011112334455556677999999988532 1345566555555432
Q ss_pred c-EEEE--EeCChhhHHHh----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 009845 320 S-RLII--TTRDKQVLDDF----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLA 388 (524)
Q Consensus 320 ~-~ili--TsR~~~~~~~~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 388 (524)
. -|++ |.|.....+.+ ..+ ..+.++..+...-.+++.-++........ .+ ...|++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFD--RqI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFD--RQILVELPDIKGREQILKVHAKNKPLAED--VD-LKKIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcc--eeeecCCcchhhHHHHHHHHhhcCCCCCc--CC-HHHHhhhCCCcccc
Confidence 2 2333 33332221221 122 45666666656666666655432221111 11 22377777776543
No 342
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.28 E-value=0.007 Score=66.37 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.+.++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 479999999999999999998754
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.012 Score=51.41 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=62.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC-CchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP-DLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~~l~~~l 288 (524)
..+++|.|+.|.|||||++.++..+.. ..+.+++.... ... ..... ....+.--. ..+.. ...-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~--~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK--LPLEE----LRRRIGYVP-QLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc--CCHHH----HHhceEEEe-eCCHHHHHHHHHHHHH
Confidence 469999999999999999999876543 34445544221 100 00111 111111000 01111 2233455566
Q ss_pred hcCccEEEecCCC---CHHHHHHHhcCCCCC-CCCcEEEEEeCChhhHHHh
Q 009845 289 QQMKIFIVLDDVN---KVRQLEYLTGGLDQF-GPGSRLIITTRDKQVLDDF 335 (524)
Q Consensus 289 ~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~~~~iliTsR~~~~~~~~ 335 (524)
...+-++++|+.. +......+...+... ..+..++++|.+.......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6778999999983 333333332222111 1246788888887666553
No 344
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.26 E-value=0.0056 Score=53.03 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=44.4
Q ss_pred EeccCcchhhHHHHHHhhhhcccccceEEEEe---eccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcC
Q 009845 215 IWGMGGTGKTTLAGAIFNLISWEFEGKCFMAN---VREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQM 291 (524)
Q Consensus 215 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~ 291 (524)
|.|+||+||||+|..++.++. + ..++. ++................+. .....+..-....+...+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s~~g~~i~~~l~----~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDSELGKQIQEYLD----NGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTSHHHHHHHHHHH----TTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhhHHHHHHHHHHH----hhccchHHHHHHHHHHHHhhh
Confidence 689999999999999998742 1 22220 01111110111111111111 111112223445555555533
Q ss_pred --ccEEEecCC-CCHHHHHHHhc
Q 009845 292 --KIFIVLDDV-NKVRQLEYLTG 311 (524)
Q Consensus 292 --~~LlVlDdv-~~~~~~~~l~~ 311 (524)
..-+|||++ .+.++.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 567899999 66666666554
No 345
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.25 E-value=0.0046 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEeccCcchhhHHHHHHhhhhcc
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+.|+|++|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999988754
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.24 E-value=0.021 Score=54.91 Aligned_cols=38 Identities=13% Similarity=-0.073 Sum_probs=29.0
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
....++.|.|++|+|||+|+.+++...... -..++|+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 345699999999999999999998876544 33445554
No 347
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.24 E-value=0.0037 Score=55.50 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999863
No 348
>PRK04040 adenylate kinase; Provisional
Probab=96.23 E-value=0.0042 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.9
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+|+|+|++|+||||+++.++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 349
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.017 Score=51.58 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=26.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
...+++|.|+.|.|||||++.++..... ..+.+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~ 59 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILI 59 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 3569999999999999999999865432 3344444
No 350
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.22 E-value=0.0059 Score=57.04 Aligned_cols=31 Identities=39% Similarity=0.408 Sum_probs=26.7
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
+...+++|.|++|.|||||++.+...+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 4578999999999999999999998776543
No 351
>PRK03839 putative kinase; Provisional
Probab=96.22 E-value=0.0036 Score=56.04 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|.|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 352
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.22 E-value=0.0042 Score=57.03 Aligned_cols=28 Identities=43% Similarity=0.655 Sum_probs=24.4
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+...+|+|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999987654
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.21 E-value=0.039 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++.|++|+|||||...+...
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 456789999999999999998763
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.027 Score=50.92 Aligned_cols=109 Identities=21% Similarity=0.128 Sum_probs=56.9
Q ss_pred EEEeccCcchhhHHHHHHhhhhccc---c-cceEEEEeec-cccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWE---F-EGKCFMANVR-EESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~---f-~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
..|.|+||+|||||.+.+++-++.. | +..+-+.+-+ +......+........ .+...+... .....+...
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~--R~dVld~cp---k~~gmmmaI 214 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGR--RMDVLDPCP---KAEGMMMAI 214 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhh--hhhhcccch---HHHHHHHHH
Confidence 7789999999999999999876554 2 2233333221 1111111111111111 000000000 111222222
Q ss_pred HhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 288 LQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
-...|=++|+|++-..++..++...+ ..|.+++.|..-.
T Consensus 215 rsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 215 RSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 23468899999997776666665544 4677887776543
No 355
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0035 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998764
No 356
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.18 E-value=0.098 Score=54.23 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=36.7
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..++|....++.+...+..-......+.|+|.+|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899999988888777543333456779999999999999998764
No 357
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.18 E-value=0.011 Score=56.34 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=32.4
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceE
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKC 242 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 242 (524)
+.+.++. ..+..++.|.|.+|.|||||+..+...+.......+
T Consensus 94 ~~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 94 RNRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred HHHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 3444554 235789999999999999999999998776644333
No 358
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.17 E-value=0.0083 Score=56.03 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=34.9
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|.++|..+-+....+.|.|++|+|||+|+.+++..........+|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455556544455789999999999999999998765444444556665
No 359
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.17 E-value=0.017 Score=56.88 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=29.9
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...|..+|..+-....++-|+|++|+|||+|+..++-.
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 44566666655556789999999999999999988754
No 360
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.025 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|.|||||++.++-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999854
No 361
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.16 E-value=0.02 Score=60.79 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=59.7
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI 275 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 275 (524)
++.+..++.. ...+|.|+|+.|+||||+...+.+.+...-...+-+.+--+. .+.. ..+.. .+.
T Consensus 305 ~~~l~~~~~~---~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~-----~~~~-----~~q~~---v~~ 368 (564)
T TIGR02538 305 KALFLEAIHK---PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI-----NLPG-----INQVN---VNP 368 (564)
T ss_pred HHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee-----cCCC-----ceEEE---ecc
Confidence 4445554432 346999999999999999987777653321111222211111 0100 01111 011
Q ss_pred CC-CCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcC
Q 009845 276 RT-PDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 276 ~~-~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
.. ......++..|+..|=.|++.++.+.+.....+..
T Consensus 369 ~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~a 406 (564)
T TIGR02538 369 KIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA 406 (564)
T ss_pred ccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHH
Confidence 11 25677889999999999999999998877655544
No 362
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.15 E-value=0.0044 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|.++|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35899999999999999999988753
No 363
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.15 E-value=0.008 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998865
No 364
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.0056 Score=55.42 Aligned_cols=29 Identities=38% Similarity=0.522 Sum_probs=26.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+.+|+|.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46799999999999999999999988755
No 365
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.14 E-value=0.17 Score=48.03 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=25.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh--hcccccceEEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL--ISWEFEGKCFMA 245 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~ 245 (524)
.-+.+|+||.|+|||+|.+.+... +..--+.++|+.
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFIt 124 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFIT 124 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEEC
Confidence 456778999999999999988653 333334445553
No 366
>PTZ00035 Rad51 protein; Provisional
Probab=96.13 E-value=0.017 Score=57.13 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=30.8
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...|..+|..+-+...++.|+|++|+|||+|+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345666776555567899999999999999999987543
No 367
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.033 Score=48.91 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+.|.|+.|+|||||.+.++--.+..
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 4589999999999999999987654443
No 368
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.057 Score=49.28 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|+|||||++.++-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 456999999999999999999887654
No 369
>PRK05973 replicative DNA helicase; Provisional
Probab=96.11 E-value=0.0078 Score=55.90 Aligned_cols=38 Identities=18% Similarity=0.008 Sum_probs=29.3
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
....++.|.|.+|+|||+|+.+++.....+...++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34679999999999999999999887655544455554
No 370
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.10 E-value=0.0082 Score=52.90 Aligned_cols=45 Identities=29% Similarity=0.263 Sum_probs=34.0
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
+||.+..+.++.+.+..-......|.|+|.+|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877644334467889999999999999998874
No 371
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.10 E-value=0.011 Score=59.69 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|.+.|++|+||||+|.+++.++.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999998753
No 372
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.10 E-value=0.0028 Score=57.02 Aligned_cols=21 Identities=29% Similarity=0.142 Sum_probs=18.6
Q ss_pred EEEEeccCcchhhHHHHHHhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~ 232 (524)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999873
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=96.09 E-value=0.011 Score=57.32 Aligned_cols=29 Identities=34% Similarity=0.300 Sum_probs=24.8
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+..-+|+|.|++|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44789999999999999999998886643
No 374
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0071 Score=52.31 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=28.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCF 243 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 243 (524)
...+|.++|.+|.||||+|..+...+.........
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 46799999999999999999999988766443333
No 375
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.09 E-value=0.024 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999988755
No 376
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.09 E-value=0.0089 Score=57.45 Aligned_cols=56 Identities=30% Similarity=0.226 Sum_probs=43.4
Q ss_pred CCCCCccccchhhhh---HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc
Q 009845 184 SDFNGFVGLNSRIEE---IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE 239 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 239 (524)
...+.|||-....+. +..++.++.-..+.|.|.||+|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 456789998766553 34566656556899999999999999999999998876544
No 377
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.09 E-value=0.025 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|++|+||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 378
>PRK06547 hypothetical protein; Provisional
Probab=96.09 E-value=0.0054 Score=54.26 Aligned_cols=27 Identities=44% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....+|+|.|++|+||||+|..+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998864
No 379
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.08 E-value=0.055 Score=48.48 Aligned_cols=27 Identities=48% Similarity=0.657 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....++|.|+.|.|||||++.++....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999987543
No 380
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.07 E-value=0.0049 Score=55.54 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.++|+|.|++|+||||+++.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998764
No 381
>PF13245 AAA_19: Part of AAA domain
Probab=96.06 E-value=0.0055 Score=45.96 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=18.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.+++.|.|+||.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457888999999999666555444
No 382
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.062 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....++|.|+.|.|||||++.++-.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999764
No 383
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.05 E-value=0.0093 Score=63.59 Aligned_cols=76 Identities=24% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEEeeccccccCcChHHHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
+.....++|.+..++.|...+..+ +.+.++|++|+||||+|+.+++.+... +....|+.+.. .....++
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~------~~~~~~~ 96 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPE------DPNNPKI 96 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCC------cchHHHH
Confidence 344567999999999888877633 479999999999999999999876543 35566665411 3445555
Q ss_pred HHHHHhh
Q 009845 262 EQVLSEV 268 (524)
Q Consensus 262 ~~l~~~l 268 (524)
+.++.++
T Consensus 97 ~~v~~~~ 103 (637)
T PRK13765 97 RTVPAGK 103 (637)
T ss_pred HHHHHhc
Confidence 5555443
No 384
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.026 Score=56.99 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=69.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccc-----eEEEEeeccccccC---------------c-ChHHHHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEG-----KCFMANVREESEKG---------------G-GLVHLREQVLSEV 268 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~~~~~~---------------~-~~~~l~~~l~~~l 268 (524)
.|.-+++|..|+|||||.+++++..-..|+. .+++.......... . ...++...++..+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl 185 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL 185 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC
Confidence 5788999999999999999999843333432 22222111111110 0 2223333344443
Q ss_pred ccccc-------ccCCC-CchHHHHHHHhcCccEEEecCCCCHH---HHHHHhcCCCCCCCCcEEEEEeCChhhHHH
Q 009845 269 LDENI-------KIRTP-DLPKYMRERLQQMKIFIVLDDVNKVR---QLEYLTGGLDQFGPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 269 ~~~~~-------~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~iliTsR~~~~~~~ 334 (524)
+-... ..+.. ...-.+.+.+-.++=||.||+-.+.- .+.+|-..+.. -...+||.|.++..+..
T Consensus 186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WKITSLIVSHDRNFLNT 260 (582)
T ss_pred CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CCceEEEEeccHHHHHH
Confidence 32211 11111 44556777777889999999874433 33444444332 23678999999877654
No 385
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.03 E-value=0.02 Score=55.78 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=43.5
Q ss_pred CCCccccchhhhhHHHhhccC----CCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 186 FNGFVGLNSRIEEIKSLLCIG----LPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|+|.++.+++|.+.+... ....+++.+.||.|.|||||+..+.+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 458999999999999988643 2347999999999999999999988766654
No 386
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.02 E-value=0.0061 Score=54.46 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.2
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999987653
No 387
>PRK00625 shikimate kinase; Provisional
Probab=96.02 E-value=0.005 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 388
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.98 E-value=0.0089 Score=55.22 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..++++|+|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 389
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.97 E-value=0.069 Score=50.58 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|.|||||++.++-..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998654
No 390
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.96 E-value=0.0085 Score=53.81 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=29.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
.++++|+||+|+|||||+..+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999888777543333
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.94 E-value=0.017 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.6
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 392
>PHA02244 ATPase-like protein
Probab=95.94 E-value=0.0065 Score=59.68 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=32.4
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|+|....+......+..--.....|.|+|++|+|||+||+.+++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577766655433332221111233588899999999999999998754
No 393
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.0095 Score=54.25 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=28.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
...+++|+|++|+||||||+.+...+.......+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 467999999999999999999998775443334454
No 394
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.92 E-value=0.015 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEeccCcchhhHHHHHHhhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 395
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.91 E-value=0.012 Score=55.52 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=31.5
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
+|...+....+...+|+|+|+||+|||||.-.+...+..+-
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 44444444455678999999999999999999988876553
No 396
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.90 E-value=0.073 Score=55.69 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=35.5
Q ss_pred hHHHHHHHhcCccEEEecCCCC---HHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhC
Q 009845 281 PKYMRERLQQMKIFIVLDDVNK---VRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFG 336 (524)
Q Consensus 281 ~~~l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~ 336 (524)
...+.+.|-.++=+|+||+-.+ .+.+.+|-..+.. -+| .+||+|.++..+....
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHh
Confidence 4456667778899999998743 3333333333322 245 7999999998877653
No 397
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.90 E-value=0.013 Score=56.88 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=36.1
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
.+.++=.......+..++.. .+.|.|.|++|+|||++|+.++..+...+
T Consensus 44 d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 34455555556667766652 34699999999999999999999876543
No 398
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.87 E-value=0.0078 Score=55.17 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=25.1
Q ss_pred hhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 202 LLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 202 ~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
|+.......+.++|+|++|+|||||+..+...
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 33333445789999999999999999998754
No 399
>PRK15115 response regulator GlrR; Provisional
Probab=95.85 E-value=0.2 Score=51.89 Aligned_cols=48 Identities=27% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++|....+..+......-......+.|.|.+|+|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888887777666544323334578899999999999999877643
No 400
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.83 E-value=0.013 Score=58.57 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=35.2
Q ss_pred CccccchhhhhHHHhhccC------------CCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 188 GFVGLNSRIEEIKSLLCIG------------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.++|.+...+.+.-.+... ....+-|.++|++|+|||+||+.++..+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4677777766665443311 1124678999999999999999999876544
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.83 E-value=0.014 Score=54.33 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=34.4
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
.|.+.|..+-+...++.|.|.+|+|||+++.+++.....+-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455556545455789999999999999999999876544433444544
No 402
>PRK13947 shikimate kinase; Provisional
Probab=95.83 E-value=0.0066 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.2
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.|.|.|++|+||||+|+.+++.+.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988643
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.82 E-value=0.028 Score=51.11 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=29.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVRE 249 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 249 (524)
.|+|+|-||+||||+|..++.++..+-...+.+.+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999999988777666545566665443
No 404
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.82 E-value=0.024 Score=55.28 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=51.9
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccccc-ceEE-EEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCF-MANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
.-+.|+|+.|+||||+++.+...+....+ ..+. +.+..+....... ..... ..........++..|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n----------~v~l~--~~~~~~~~~lv~~aL 212 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAEN----------AVALH--TSDTVDMARLLKSTM 212 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCC----------EEEec--cCCCcCHHHHHHHHh
Confidence 46889999999999999999887642211 2222 2211111100000 00000 011225667788889
Q ss_pred hcCccEEEecCCCCHHHHHHH
Q 009845 289 QQMKIFIVLDDVNKVRQLEYL 309 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~l 309 (524)
+..+-.||+.++.+.+.+..+
T Consensus 213 R~~PD~IivGEiRg~ea~~~l 233 (323)
T PRK13833 213 RLRPDRIIVGEVRDGAALTLL 233 (323)
T ss_pred CCCCCEEEEeecCCHHHHHHH
Confidence 999999999999888766543
No 405
>PRK15453 phosphoribulokinase; Provisional
Probab=95.82 E-value=0.011 Score=55.83 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....+|+|.|.+|+||||+|+.+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999876654
No 406
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.81 E-value=0.0058 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 407
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.054 Score=56.41 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=92.6
Q ss_pred CccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcC
Q 009845 188 GFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGG 256 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 256 (524)
.+-|-...+..+..+... +-...+-+.++|++|+|||-|+++++++.. ..+|..+.
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~--------- 251 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLING--------- 251 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEeccc---------
Confidence 445555666665554321 123467899999999999999999998755 33444321
Q ss_pred hHHHHHHHHHhhcccccccCCCCchHHHHHHHhcC-ccEEEecCCCCHH------------HHHHHhcCCCCCCCCcEE-
Q 009845 257 LVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQM-KIFIVLDDVNKVR------------QLEYLTGGLDQFGPGSRL- 322 (524)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~------------~~~~l~~~~~~~~~~~~i- 322 (524)
..+...++ .+ ....+...+.+..+.+ |.++.+|+++... ....++..+.+..+.+++
T Consensus 252 -peli~k~~----gE----te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 252 -PELISKFP----GE----TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred -HHHHHhcc----cc----hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 12222221 11 1113556666667777 9999999985432 122233323333333333
Q ss_pred -EEEeCChhhHHH-hC-CCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 323 -IITTRDKQVLDD-FG-VLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 323 -liTsR~~~~~~~-~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
|-+|++...+.. .. ......+.+.-.+..+-.++++...-.-+.. .......++..+.|+-
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 445555533221 11 0111556676667666666666655332222 1233455666666664
No 408
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.062 Score=56.91 Aligned_cols=93 Identities=24% Similarity=0.331 Sum_probs=55.3
Q ss_pred ccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChH
Q 009845 189 FVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLV 258 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 258 (524)
.=|.+....+|.+-+.. +-.+..-|.++||||.|||-||++++-+..-. |+. +. + .
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-VK-------G-P 739 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-VK-------G-P 739 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-ec-------C-H
Confidence 33566666666654432 21224568899999999999999999865433 232 11 1 1
Q ss_pred HHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH
Q 009845 259 HLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV 303 (524)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 303 (524)
+++.... |... ....+...+.-..+|++|+||++++.
T Consensus 740 ELLNMYV---GqSE-----~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYV---GQSE-----ENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHh---cchH-----HHHHHHHHHhhccCCeEEEecccccc
Confidence 2333322 1111 12444555555668999999999754
No 409
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.79 E-value=0.038 Score=53.66 Aligned_cols=49 Identities=33% Similarity=0.285 Sum_probs=35.7
Q ss_pred hhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 197 EEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|...|. .+-+..+++-|+|++|+||||||..+...........+|++
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 34555554 33445789999999999999999999887655555566665
No 410
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.79 E-value=0.0065 Score=51.66 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred EEEEeccCcchhhHHHHHHhhhhccc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
+++|+|++|+|||||++.++..+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998875443
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.77 E-value=0.037 Score=54.77 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+++.++||.|+||||-...++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999987777776654
No 412
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.76 E-value=0.0074 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999888654
No 413
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0072 Score=52.17 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEeccCcchhhHHHHHHh
Q 009845 212 IVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~ 231 (524)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 414
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.25 Score=47.39 Aligned_cols=127 Identities=8% Similarity=0.038 Sum_probs=67.4
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-------------ccceEEEEeeccccccCcChHHHHHH
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-------------FEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
++|...+..+ .-.....++|+.|+||+++|..++..+-.. ++...++...... ..-++
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~--~~I~i------ 77 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG--RLHSI------ 77 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--CcCcH------
Confidence 4455555432 225688899999999999999998864321 1222222100000 00001
Q ss_pred HHHhhcccccccCCCCchHHHHHHHh-----cCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHh
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQ-----QMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDF 335 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~ 335 (524)
+.+..+.+.+. ++.-++|+|+++.. +....++..+....++..+|++|.+. .++...
T Consensus 78 ---------------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 78 ---------------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred ---------------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 11222222222 34458899999643 45666666655445666666666664 333332
Q ss_pred CCCCcceEEeCCC
Q 009845 336 GVLNTNIYEVNGL 348 (524)
Q Consensus 336 ~~~~~~~~~l~~L 348 (524)
...+..+.+.++
T Consensus 143 -~SRcq~~~~~~~ 154 (290)
T PRK05917 143 -RSRSLSIHIPME 154 (290)
T ss_pred -HhcceEEEccch
Confidence 122367777765
No 415
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.75 E-value=0.0063 Score=54.48 Aligned_cols=23 Identities=48% Similarity=0.706 Sum_probs=21.1
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998875
No 416
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.094 Score=52.58 Aligned_cols=29 Identities=38% Similarity=0.332 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+-+.+.||+|.|||.|++.++-+....
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce
Confidence 36778899999999999999999875543
No 417
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.75 E-value=0.032 Score=56.87 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=53.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhc--c-----cccccCCC---
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVL--D-----ENIKIRTP--- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~-----~~~~~~~~--- 278 (524)
..+.++|.|.+|+|||+|+..++.....+.+..+.+..+.+.. ....++.+.+...-. . ...+.+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3568999999999999999999887665544444444343332 445566666654311 0 00011110
Q ss_pred ---CchHHHHHHH---hcCccEEEecCCCC
Q 009845 279 ---DLPKYMRERL---QQMKIFIVLDDVNK 302 (524)
Q Consensus 279 ---~~~~~l~~~l---~~~~~LlVlDdv~~ 302 (524)
...-.+.+++ +++++||++|++..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 0111233444 57899999999943
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.75 E-value=0.031 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999998775
No 419
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.74 E-value=0.0099 Score=58.85 Aligned_cols=51 Identities=29% Similarity=0.157 Sum_probs=39.9
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccce
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGK 241 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 241 (524)
..++|.+..+..+...+.. .+.+.+.|++|+|||+||+.++..+...|...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~----~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 24 KVVVGDEEVIELALLALLA----GGHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CeeeccHHHHHHHHHHHHc----CCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 3488988888877766653 34689999999999999999999887554433
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.74 E-value=0.015 Score=58.19 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=36.4
Q ss_pred CccccchhhhhHHHhhcc---------C---CCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 188 GFVGLNSRIEEIKSLLCI---------G---LPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~---------~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.++|.+...+.+..++.. + ....+.+.+.|++|+|||+||+.++..+...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 577887777777665532 0 0113678999999999999999999876443
No 421
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.74 E-value=0.14 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|.|||||.+.++-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 422
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.74 E-value=0.068 Score=49.61 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|.|||||++.++-..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35699999999999999999987643
No 423
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.74 E-value=0.007 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+|.|+|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.73 E-value=0.008 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.212 Sum_probs=20.5
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 425
>PHA02774 E1; Provisional
Probab=95.70 E-value=0.026 Score=58.54 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=31.7
Q ss_pred hhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 194 SRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 194 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.-+..|+.++. +.++...++|+||+|+|||.+|..+++-+.
T Consensus 419 ~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34556666665 334456899999999999999999998764
No 426
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.70 E-value=0.026 Score=61.11 Aligned_cols=50 Identities=26% Similarity=0.241 Sum_probs=36.8
Q ss_pred hhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 196 IEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 196 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...|..+|. .+-+..+++-|+|++|+|||||+.+++......-...+|+.
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 345666775 45556889999999999999999998776544444556665
No 427
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.70 E-value=0.0068 Score=55.19 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=21.0
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 428
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.69 E-value=0.03 Score=55.04 Aligned_cols=130 Identities=21% Similarity=0.204 Sum_probs=65.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccccc-------ceEEEE------eeccccccCcChHHHHHHHHHhhcc-----
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-------GKCFMA------NVREESEKGGGLVHLREQVLSEVLD----- 270 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~------~~~~~~~~~~~~~~l~~~l~~~l~~----- 270 (524)
..-++.|+|.+|+||||+.+.+......... +.+-+. ......+...+-..+++++.+..+.
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av 487 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV 487 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence 3568999999999999999998764332211 111110 0011111112222444444433222
Q ss_pred --------ccc--------ccCCC-CchHHHHHHHhcCccEEEecCCCCH---HHHHHHhcCCCCC--CCCcEEEEEeCC
Q 009845 271 --------ENI--------KIRTP-DLPKYMRERLQQMKIFIVLDDVNKV---RQLEYLTGGLDQF--GPGSRLIITTRD 328 (524)
Q Consensus 271 --------~~~--------~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~--~~~~~iliTsR~ 328 (524)
.+. +.... .-...+...++.++-++++|.+... .....++..+... ..|..+++.|++
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr 567 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 110 01111 1233566777888899999998432 1111122111111 246778887887
Q ss_pred hhhHHHhCCC
Q 009845 329 KQVLDDFGVL 338 (524)
Q Consensus 329 ~~~~~~~~~~ 338 (524)
+++...+..+
T Consensus 568 pEv~~AL~PD 577 (593)
T COG2401 568 PEVGNALRPD 577 (593)
T ss_pred HHHHhccCCc
Confidence 7777665443
No 429
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.68 E-value=0.02 Score=59.08 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=49.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccccc-ceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCC------Cch
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTP------DLP 281 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~------~~~ 281 (524)
..+..+|+|++|+|||+|+..+++.+...++ ..+++..+.+-. ..+.++.+.+-.++-....+.+.. .+.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 4567899999999999999999997755433 333444343332 223333333211111111111110 111
Q ss_pred HHHHHHH--hcCccEEEecCCCCH
Q 009845 282 KYMRERL--QQMKIFIVLDDVNKV 303 (524)
Q Consensus 282 ~~l~~~l--~~~~~LlVlDdv~~~ 303 (524)
-.+.+++ .++.+||++|++...
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchHH
Confidence 1122223 578999999999544
No 430
>PRK06217 hypothetical protein; Validated
Probab=95.67 E-value=0.0081 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|+|.|.+|+||||||++++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 431
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.65 E-value=0.014 Score=49.67 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=26.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
++|.|+|+.|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999987754 34333433
No 432
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.11 Score=48.50 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35699999999999999999998754
No 433
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.64 E-value=0.019 Score=61.39 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=42.6
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
...++|.++.++.+...+..+ +.+.++|++|+|||+||+.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 356889999888888877633 367799999999999999999887654 23344444
No 434
>PRK14529 adenylate kinase; Provisional
Probab=95.64 E-value=0.047 Score=50.33 Aligned_cols=91 Identities=22% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEeccCcchhhHHHHHHhhhhcccc-cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcC
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWEF-EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQM 291 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~ 291 (524)
|+|.|++|+||||+++.++..+.-.+ ..+-.+ ++.......+....+.++.. ..-.+.......+.+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhcc
Confidence 78899999999999999988764321 111111 11111112222333333322 11222223455566666432
Q ss_pred -ccEEEecCC-CCHHHHHHHh
Q 009845 292 -KIFIVLDDV-NKVRQLEYLT 310 (524)
Q Consensus 292 -~~LlVlDdv-~~~~~~~~l~ 310 (524)
.--+|||.+ .+..+.+.|.
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHH
Confidence 345999999 6666665553
No 435
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.64 E-value=0.05 Score=58.97 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
....|+|+|..|+|||||++-+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999865
No 436
>PRK13764 ATPase; Provisional
Probab=95.63 E-value=0.037 Score=58.43 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=50.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
.+.+.|+|++|+||||+++.+++.+..+......+.+..+.... . ...+... . ...........|+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~-----~----~i~q~~~----~-~~~~~~~~~~lLR 322 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVP-----P----EITQYSK----L-EGSMEETADILLL 322 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCC-----C----cceEEee----c-cccHHHHHHHHHh
Confidence 34689999999999999999998775442222234322222110 0 0011100 0 0012223334467
Q ss_pred cCccEEEecCCCCHHHHHHH
Q 009845 290 QMKIFIVLDDVNKVRQLEYL 309 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~l 309 (524)
.+|=.+++|++.+.+.++.+
T Consensus 323 ~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hCCCEEEECCCCCHHHHHHH
Confidence 78999999999988887754
No 437
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.63 E-value=0.035 Score=56.70 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=51.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhh--ccc-----ccccCCC---
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEV--LDE-----NIKIRTP--- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~-----~~~~~~~--- 278 (524)
..+.++|.|.+|+|||+|+.++++....++...+.+..+.+.. ....++.+.+...- ... ..+.+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3568999999999999999999987764433333333333322 44556666655431 110 0011000
Q ss_pred ---CchHHHHHHH---hcCccEEEecCCC
Q 009845 279 ---DLPKYMRERL---QQMKIFIVLDDVN 301 (524)
Q Consensus 279 ---~~~~~l~~~l---~~~~~LlVlDdv~ 301 (524)
...-.+.+++ .++++||++|++.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1111233333 3789999999994
No 438
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.61 E-value=0.0074 Score=55.86 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+|+|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998775
No 439
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.13 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|.|||||.+.++-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998764
No 440
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.61 E-value=0.17 Score=46.26 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|.|||||++.++....
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 456999999999999999999887543
No 441
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.0091 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+-|.|+|.||+|||||+.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3458899999999999999998653
No 442
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.59 E-value=0.021 Score=55.98 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=29.6
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+.+.+....+...+|+|+|++|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3333333223457899999999999999999998877654
No 443
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.59 E-value=0.039 Score=59.44 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....++|+|+.|.|||||++-+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999987765
No 444
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.58 E-value=0.015 Score=51.40 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=32.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEee
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANV 247 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 247 (524)
...|.|-|++|+|||+|..+.++.++++|+..+.-.++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 47899999999999999999999999888876665544
No 445
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.57 E-value=0.067 Score=48.88 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=18.9
Q ss_pred EEEEeccCcchhhHHHHHHh
Q 009845 212 IVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~ 231 (524)
+++|.|+.|.|||||...++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999984
No 446
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.52 E-value=0.011 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+.++++|+||+|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998764
No 447
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.52 E-value=0.01 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEeccCcchhhHHHHHHhhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 448
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.52 E-value=0.048 Score=58.18 Aligned_cols=27 Identities=37% Similarity=0.345 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.++..|+|.+|+||||++..+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999998876543
No 449
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.52 E-value=0.12 Score=47.29 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999998754
No 450
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.50 E-value=0.032 Score=54.53 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=52.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
.+.+.|+|++|+|||||++.++..+.... ...+.+.+..+..-...... ++. ..........++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v--------~~~----~~~~~~~~~ll~~a 215 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYV--------QYH----TSIDVNMTALLKTT 215 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEE--------EEe----cCCCCCHHHHHHHH
Confidence 45799999999999999999987642111 12222222221110000000 000 00112567788888
Q ss_pred HhcCccEEEecCCCCHHHHHH
Q 009845 288 LQQMKIFIVLDDVNKVRQLEY 308 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~ 308 (524)
|+..+=.||+.++.+.+.+..
T Consensus 216 LR~~PD~IivGEiR~~Ea~~~ 236 (319)
T PRK13894 216 LRMRPDRILVGEVRGPEALDL 236 (319)
T ss_pred hcCCCCEEEEeccCCHHHHHH
Confidence 999999999999988876654
No 451
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.50 E-value=0.045 Score=55.57 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=53.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh--hcc-----cccccCCC-C-
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE--VLD-----ENIKIRTP-D- 279 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~-----~~~~~~~~-~- 279 (524)
..+.++|.|.+|+|||+|+..++.....+....+.+..+.+.. ....++.+.+... +.. ...+.+.. .
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4568999999999999999999887665544444444444332 3455666666443 111 00111110 0
Q ss_pred ----chHHHHHHH---hcCccEEEecCCCC
Q 009845 280 ----LPKYMRERL---QQMKIFIVLDDVNK 302 (524)
Q Consensus 280 ----~~~~l~~~l---~~~~~LlVlDdv~~ 302 (524)
..-.+.+++ +++++||++|++..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 112233444 46899999999943
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.50 E-value=0.018 Score=60.05 Aligned_cols=49 Identities=27% Similarity=0.196 Sum_probs=36.0
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
..|.++|..+-+..+.+.|.|++|+|||+||.+++..-..+ -..++|+.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34556666555668899999999999999999997764333 34555665
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.49 E-value=0.01 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.8
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998854
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.49 E-value=0.015 Score=51.22 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=25.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++++|+|+.|+|||||+..+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 35699999999999999999999887653
No 455
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.48 E-value=0.02 Score=55.33 Aligned_cols=101 Identities=23% Similarity=0.411 Sum_probs=62.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh-hccc------ccccCCC----
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE-VLDE------NIKIRTP---- 278 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~------~~~~~~~---- 278 (524)
..-+++.|-+|+|||.|.+++.+.+...+.+...+..+++.+.. -.+++.++... +... ..+.+..
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 45799999999999999999999988777777666666665533 44566665544 1110 0111111
Q ss_pred ------CchHHHHHHHhcCccEEEecCCCCH----HHHHHHhcCCC
Q 009845 279 ------DLPKYMRERLQQMKIFIVLDDVNKV----RQLEYLTGGLD 314 (524)
Q Consensus 279 ------~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~~~ 314 (524)
...++++.. .++.+|+++||+..- ..+..++...+
T Consensus 224 ValtGlT~AEyfRD~-~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 224 VALTGLTMAEYFRDE-EGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred ehhhhhhHHHHhhcc-cCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 233344332 367999999999432 23455555443
No 456
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.48 E-value=0.21 Score=48.80 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|.|||||.+.++-.
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999998764
No 457
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.48 E-value=0.012 Score=53.22 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++.|.|++|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 458
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.47 E-value=0.019 Score=56.59 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=54.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc-CcChHHHHHHHHHhhccc-ccccCCCCchHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK-GGGLVHLREQVLSEVLDE-NIKIRTPDLPKYMRE 286 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~l~~ 286 (524)
..+.|.|+|+.|+|||||++.+...+.... ..+-+.+..+.... ..+... + +... ............++.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~-ri~tiEd~~El~l~~~~n~~~----~---~~~~~~~~~~~~~~~~ll~~ 230 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHPNRVH----L---LASKGGQGRAKVTTQDLIEA 230 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCC-eEEEecCCCccccccCCCEEE----E---EecCCCCCcCcCcHHHHHHH
Confidence 345799999999999999999988765432 22223222221100 000000 0 0000 001111256678888
Q ss_pred HHhcCccEEEecCCCCHHHHHHH
Q 009845 287 RLQQMKIFIVLDDVNKVRQLEYL 309 (524)
Q Consensus 287 ~l~~~~~LlVlDdv~~~~~~~~l 309 (524)
.|+..+=.||+.++.+.+.+..+
T Consensus 231 ~LR~~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 231 CLRLRPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred HhccCCCeEEEEecCCHHHHHHH
Confidence 89999999999999888766543
No 459
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.46 E-value=0.039 Score=54.29 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=30.1
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+..+|..+-+...++-|+|++|+|||+|+.+++...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 45556665555567899999999999999999998764
No 460
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.46 E-value=0.018 Score=51.83 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..++|-+.....|.-... +..-+.+.|++|+|||+||+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 457787777776665554 235799999999999999999876
No 461
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.46 E-value=0.086 Score=56.10 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.++..|+|.+|.||||++..+...+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999998776543
No 462
>PRK13949 shikimate kinase; Provisional
Probab=95.46 E-value=0.012 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|.|.|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 463
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.01 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999873
No 464
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.46 E-value=0.019 Score=53.53 Aligned_cols=36 Identities=39% Similarity=0.370 Sum_probs=24.4
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+.+...+.. ..+..|+||||.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34555555542 2279999999999998888877766
No 465
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.46 E-value=0.02 Score=52.50 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=33.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
.+.++|.|.+|+|||+|+.++++....... +++. +.+.. ....++.+.+..
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~--V~~~-iGer~---~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDADVV--VYAL-IGERG---REVTEFIEELKG 65 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTTEE--EEEE-ESECH---HHHHHHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcccccce--eeee-ccccc---hhHHHHHHHHhh
Confidence 457899999999999999999988754322 3333 32222 345555555543
No 466
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.45 E-value=0.0087 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEeccCcchhhHHHHHHhhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
++|.|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 467
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.45 E-value=0.07 Score=58.64 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHhhCCCcEEecCCc
Q 009845 24 RDNFTSRLHAALCRKKINTFIDDEE 48 (524)
Q Consensus 24 ~~~~~~~l~~~L~~~g~~~~~d~~~ 48 (524)
|..|++....+|+++|+..-+|++.
T Consensus 177 R~~wa~~~N~~l~~~g~~~rid~rS 201 (744)
T TIGR02768 177 REQWAELANEHLAEAGLDLRIDHRS 201 (744)
T ss_pred HHHHHHHHHHHHHHcCCCceEcccc
Confidence 6789999999999999999999873
No 468
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.45 E-value=0.078 Score=55.30 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=37.3
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++|....+.++...+.........+.|.|.+|+||+++|+.+...-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 458898888888877765433445578899999999999999887643
No 469
>PRK14526 adenylate kinase; Provisional
Probab=95.45 E-value=0.031 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEeccCcchhhHHHHHHhhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
++|.|++|+||||+++.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988654
No 470
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.44 E-value=0.018 Score=49.90 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=29.4
Q ss_pred hhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 194 SRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 194 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..+++|..++. + +++++.|++|+|||||...+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45777888885 2 69999999999999999998775
No 471
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.22 Score=45.30 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..-+-+|-||.|.||||||..+.-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999864
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.43 E-value=0.012 Score=53.90 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356899999999999999999988643
No 473
>PRK14530 adenylate kinase; Provisional
Probab=95.43 E-value=0.012 Score=54.41 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+.|+|.|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 474
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.016 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|+||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999876
No 475
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.42 E-value=0.15 Score=43.50 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=24.4
Q ss_pred HHHHHHhhhcceEEEEeccCcccchhhHHHHHHHHH
Q 009845 57 PAIFDAIQGSKISVIILSKDYASSKWCLNELVKILE 92 (524)
Q Consensus 57 ~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~ 92 (524)
..+.++|+.++..++|++..-..+.+. .++...+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~ 37 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVK 37 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHH
Confidence 467889999999999999765555442 24555444
No 476
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.015 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.141 Sum_probs=21.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..++++|+|+.|.||||+.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998764
No 477
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.40 E-value=0.027 Score=62.86 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=97.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccc----cceEEEEeeccccccCcChH--HHHHHHHHhhcccccccCCCCchHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEF----EGKCFMANVREESEKGGGLV--HLREQVLSEVLDENIKIRTPDLPKY 283 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~ 283 (524)
..-+.|+|.+|.||||+...++-....+. +..+++. +........... .+...+...+..... .......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQGI---AKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccCC---cchhhHH
Confidence 34788999999999999999876543332 1222222 111100000001 222222222221111 1123333
Q ss_pred HHHHHhcCccEEEecCCCCHHH------HHHHhcCCCCCCCCcEEEEEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHH
Q 009845 284 MRERLQQMKIFIVLDDVNKVRQ------LEYLTGGLDQFGPGSRLIITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELF 357 (524)
Q Consensus 284 l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll 357 (524)
..+.++..++++++|.++.... +..+-..++. -+.+++|+|+|....-..... ....++..+.++.-.+.+
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~--f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKG--FAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhh--hhhccchhhhHHHHHHHH
Confidence 3578889999999999975532 2222222222 357899999987744332211 155666666666555444
Q ss_pred Hhhh--------cCCCCCC-chHH-H---HHHHHHHHhCCChHHHHHHHHHhcC------CCHHHHHHHHHHhh
Q 009845 358 CNFA--------FKHDYCL-DDLL-V---LLEHVVKYANGNPLALRVLGSFLHQ------KSKLEWENALENLK 412 (524)
Q Consensus 358 ~~~~--------~~~~~~~-~~~~-~---~~~~i~~~~~G~PLal~~~~~~l~~------~~~~~~~~~l~~l~ 412 (524)
.... ++..... .... . -...-.+....+|+.|.+.+..... ....-++.+++.+-
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 3111 1111101 0011 1 1122334448889999888755431 23455666666543
No 478
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.40 E-value=0.02 Score=60.71 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+..+-|.+..+.|.++.........+|+|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45667777777777777655555679999999999999999999998764
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.40 E-value=0.064 Score=59.16 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
+.+++.|+||.+.||||+.+.++-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 467899999999999999998864
No 480
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.39 E-value=0.023 Score=57.62 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=33.1
Q ss_pred CccccchhhhhHHHhhc-------cC-------CCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 188 GFVGLNSRIEEIKSLLC-------IG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~-------~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|.+..++.|...+. .. ......+.++|++|+|||+||+.++..+.
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36777777766644331 00 01235789999999999999999987654
No 481
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.39 E-value=0.35 Score=50.29 Aligned_cols=47 Identities=23% Similarity=0.086 Sum_probs=36.1
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..++|....+..+...+.........+.|.|.+|+||+++|+.+.+.
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 189 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN 189 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHh
Confidence 35788888887777766543334567889999999999999998664
No 482
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.38 E-value=0.13 Score=45.14 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=21.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..++-.|+|..|+|||||...++-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 356899999999999999998865
No 483
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.012 Score=52.58 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 484
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.38 E-value=0.013 Score=55.60 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+|.++|++|+||||+|++++..+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987654
No 485
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.37 E-value=0.067 Score=56.81 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....++|+|+.|+|||||++.+...+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999987643
No 486
>PRK14527 adenylate kinase; Provisional
Probab=95.36 E-value=0.014 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|++|+||||+|+.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 487
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.35 E-value=0.012 Score=51.71 Aligned_cols=21 Identities=43% Similarity=0.355 Sum_probs=17.8
Q ss_pred EEEeccCcchhhHHHHHHhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~ 233 (524)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 488
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.35 E-value=0.051 Score=53.32 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=30.3
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+..+|..+-+...++-|+|++|+|||+|+.+++....
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345566655545578999999999999999999987643
No 489
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.34 E-value=0.044 Score=50.64 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=61.4
Q ss_pred CceEEEEeccCcchhh-HHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKT-TLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER 287 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKT-tLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~ 287 (524)
+...|.|+|..|+||| |+|..+-++.+..+.+.+-+.+ .+.-+.+.--.-+.....+.+.......+++.
T Consensus 126 kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIED---------PIEfih~h~~CIvTQREvGvDTesw~~AlkNt 196 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIED---------PIEFIHKHKRCIVTQREVGVDTESWEVALKNT 196 (375)
T ss_pred cCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecC---------hHHHHhcccceeEEeeeeccchHHHHHHHHHH
Confidence 3568999999999997 5666666777766666655542 12221111100122233334444567788899
Q ss_pred HhcCccEEEecCCCCHHHHHHHhcC
Q 009845 288 LQQMKIFIVLDDVNKVRQLEYLTGG 312 (524)
Q Consensus 288 l~~~~~LlVlDdv~~~~~~~~l~~~ 312 (524)
|++.+-+|++-++.+.+..+.-...
T Consensus 197 lRQapDvI~IGEvRsretMeyAi~f 221 (375)
T COG5008 197 LRQAPDVILIGEVRSRETMEYAIQF 221 (375)
T ss_pred HhcCCCeEEEeecccHhHHHHHHHH
Confidence 9999999999999888877765543
No 490
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.34 E-value=0.021 Score=52.02 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+.++.|.|.+|.||||++..+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 3578899999999999999999887664
No 491
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.33 E-value=0.079 Score=44.42 Aligned_cols=25 Identities=24% Similarity=-0.074 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.+.|.|++|+|||+.+..++.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4789999999999999988776543
No 492
>PRK13948 shikimate kinase; Provisional
Probab=95.32 E-value=0.015 Score=51.86 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+.|++.|+.|+||||+++.++..+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 493
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.28 E-value=0.017 Score=46.23 Aligned_cols=23 Identities=39% Similarity=0.260 Sum_probs=20.6
Q ss_pred CceEEEEeccCcchhhHHHHHHh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~ 231 (524)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35689999999999999999976
No 494
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.42 Score=47.26 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=36.8
Q ss_pred ceEEeCCCCHHHHHHHHHhhhcC----CCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 341 NIYEVNGLEYHEALELFCNFAFK----HDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 341 ~~~~l~~L~~~ea~~ll~~~~~~----~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
.++++++++.+|+.+++...... ...+. ++.-+++.-..+|||--++.++..+
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 56899999999999887665421 11221 3445677788899997777776654
No 495
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.27 E-value=0.082 Score=58.16 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....++|+|+.|+|||||++-++...
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999987643
No 496
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.047 Score=55.20 Aligned_cols=86 Identities=17% Similarity=0.316 Sum_probs=48.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccc-------ccccCCC---
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDE-------NIKIRTP--- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~~~~~--- 278 (524)
....++|.|+.|+|||||++.++..... +..++ ..+++.. ....++.+.++..-+.. ..+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 3468999999999999999998865433 23333 3233322 33445555544331100 0000000
Q ss_pred -------CchHHHHHHHhcCccEEEecCCCC
Q 009845 279 -------DLPKYMRERLQQMKIFIVLDDVNK 302 (524)
Q Consensus 279 -------~~~~~l~~~l~~~~~LlVlDdv~~ 302 (524)
...++++. +++++||++||+..
T Consensus 235 ~a~~~A~tiAEyfrd--~G~~VLl~~DslTR 263 (444)
T PRK08972 235 KGCETATTIAEYFRD--QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEEcChHH
Confidence 12233332 57899999999943
No 497
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.27 E-value=0.2 Score=51.69 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=44.9
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
..|-..-+..|..++. +-....+++|.|.+|+|||+++.+++...... -..++|+. +. .+...+...++..
T Consensus 175 ~~gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S-lE------m~~~~i~~R~~~~ 246 (434)
T TIGR00665 175 ITGVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS-LE------MSAEQLAMRMLSS 246 (434)
T ss_pred CCcccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe-Cc------CCHHHHHHHHHHH
Confidence 3444555555656553 44456799999999999999999998875532 22344443 21 3445566666554
No 498
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.074 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-...|+|+||.|+|||||...+.-.
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcC
Confidence 3457999999999999999988754
No 499
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.5 Score=46.28 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+..+|.++|.-|+||||.+..+++.++.+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkk 128 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKK 128 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhc
Confidence 356799999999999999999988876655
No 500
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.15 Score=45.84 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHhcCccEEEecCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHHH
Q 009845 282 KYMRERLQQMKIFIVLDDVNK------VRQLEYLTGGLDQFGPGSRLIITTRDKQVLDD 334 (524)
Q Consensus 282 ~~l~~~l~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~ 334 (524)
-.+.+.+.-+|=+|.+|+-.+ ...++++...+. ....|+|.|.+..-+..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaR 213 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHH
Confidence 345566677888999998732 234666665553 45678888888755443
Done!