Query 009845
Match_columns 524
No_of_seqs 412 out of 2836
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 4.8E-47 1.6E-51 333.9 12.7 175 3-179 27-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.3E-47 1.1E-51 330.3 11.4 169 7-179 4-172 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 4.3E-40 1.5E-44 347.1 22.2 296 190-499 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 9.8E-37 3.3E-41 353.2 25.7 303 181-498 118-452 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 8.9E-37 3.1E-41 326.1 22.5 326 181-522 118-495 (591)
6 1vt4_I APAF-1 related killer D 100.0 5.8E-35 2E-39 312.8 20.8 298 187-519 128-459 (1221)
7 3h16_A TIR protein; bacteria T 100.0 5.2E-31 1.8E-35 228.7 5.8 121 8-129 17-137 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 3.9E-27 1.3E-31 200.9 2.9 137 4-145 3-145 (146)
9 2js7_A Myeloid differentiation 99.9 2.3E-23 8E-28 180.6 5.5 103 6-110 11-117 (160)
10 2j67_A TOLL like receptor 10; 99.9 4.6E-23 1.6E-27 181.5 4.2 103 6-110 30-136 (178)
11 1fyx_A TOLL-like receptor 2; b 99.9 2.9E-23 9.8E-28 178.3 2.2 99 8-108 2-104 (149)
12 1t3g_A X-linked interleukin-1 99.9 5.2E-22 1.8E-26 171.9 7.3 102 10-111 1-115 (159)
13 2qen_A Walker-type ATPase; unk 99.8 1.3E-18 4.5E-23 172.9 22.4 288 181-492 6-349 (350)
14 2fna_A Conserved hypothetical 99.8 7.7E-18 2.6E-22 167.7 22.8 288 182-491 8-356 (357)
15 1w5s_A Origin recognition comp 99.7 7.4E-17 2.5E-21 164.0 22.3 293 184-487 19-387 (412)
16 2qby_B CDC6 homolog 3, cell di 99.6 8.7E-15 3E-19 147.2 21.8 270 187-476 20-339 (384)
17 1fnn_A CDC6P, cell division co 99.6 2.9E-14 9.7E-19 143.7 22.6 302 185-498 15-387 (389)
18 2qby_A CDC6 homolog 1, cell di 99.6 1.7E-14 5.9E-19 145.0 20.4 282 184-476 17-348 (386)
19 2v1u_A Cell division control p 99.6 7.6E-14 2.6E-18 140.3 22.0 278 185-476 17-351 (387)
20 3j0a_A TOLL-like receptor 5; m 99.6 1E-15 3.5E-20 169.7 7.7 103 7-111 666-775 (844)
21 1njg_A DNA polymerase III subu 99.5 3.9E-13 1.3E-17 125.8 13.8 200 184-396 20-231 (250)
22 2chg_A Replication factor C sm 99.4 1.8E-12 6.3E-17 119.4 13.9 188 183-394 13-205 (226)
23 1sxj_B Activator 1 37 kDa subu 99.3 1.4E-11 4.8E-16 120.5 13.5 187 184-393 18-210 (323)
24 1iqp_A RFCS; clamp loader, ext 99.2 7.1E-11 2.4E-15 115.7 13.3 190 184-396 22-215 (327)
25 1hqc_A RUVB; extended AAA-ATPa 99.1 4.7E-09 1.6E-13 102.6 21.7 255 183-480 8-302 (324)
26 2chq_A Replication factor C sm 99.1 1.3E-09 4.5E-14 106.2 15.7 188 184-394 14-205 (319)
27 1jr3_A DNA polymerase III subu 99.1 2.4E-09 8.2E-14 106.8 15.6 197 184-394 13-222 (373)
28 3pfi_A Holliday junction ATP-d 99.0 1.5E-08 5.3E-13 99.5 17.4 255 184-482 26-319 (338)
29 3te6_A Regulatory protein SIR3 99.0 9.1E-09 3.1E-13 98.9 14.9 165 188-362 21-212 (318)
30 1sxj_D Activator 1 41 kDa subu 98.9 2.6E-08 8.8E-13 98.5 15.5 197 184-393 34-235 (353)
31 1jbk_A CLPB protein; beta barr 98.9 1.5E-08 5.2E-13 90.5 12.2 50 184-235 19-68 (195)
32 3bos_A Putative DNA replicatio 98.8 9.4E-09 3.2E-13 95.6 10.4 176 185-395 26-219 (242)
33 1sxj_A Activator 1 95 kDa subu 98.8 3.3E-08 1.1E-12 102.8 15.4 189 184-392 36-252 (516)
34 3d8b_A Fidgetin-like protein 1 98.8 1.4E-07 4.9E-12 93.2 18.8 206 162-395 63-297 (357)
35 1d2n_A N-ethylmaleimide-sensit 98.8 1.3E-07 4.5E-12 89.8 17.9 170 187-384 33-228 (272)
36 3uk6_A RUVB-like 2; hexameric 98.8 1.5E-07 5.1E-12 93.6 18.5 203 186-394 43-304 (368)
37 2z4s_A Chromosomal replication 98.8 3.7E-08 1.3E-12 100.1 14.2 186 186-393 104-306 (440)
38 3h4m_A Proteasome-activating n 98.8 8.3E-08 2.8E-12 91.8 15.9 186 183-393 13-231 (285)
39 1sxj_E Activator 1 40 kDa subu 98.8 3.1E-08 1.1E-12 98.0 11.7 199 184-393 11-237 (354)
40 3b9p_A CG5977-PA, isoform A; A 98.7 4.2E-07 1.4E-11 87.5 18.0 196 171-395 5-235 (297)
41 3pvs_A Replication-associated 98.7 9.3E-08 3.2E-12 97.0 13.7 181 183-393 22-215 (447)
42 3eie_A Vacuolar protein sortin 98.7 4.5E-07 1.5E-11 88.3 17.9 186 183-395 14-230 (322)
43 2qp9_X Vacuolar protein sortin 98.7 2.8E-07 9.5E-12 91.0 16.2 185 184-395 48-263 (355)
44 2qz4_A Paraplegin; AAA+, SPG7, 98.7 5.6E-07 1.9E-11 84.7 17.3 187 186-395 5-224 (262)
45 3syl_A Protein CBBX; photosynt 98.7 2.2E-07 7.4E-12 90.0 14.7 150 188-363 32-219 (309)
46 1l8q_A Chromosomal replication 98.7 7.4E-07 2.5E-11 86.9 18.6 180 185-390 9-205 (324)
47 2zan_A Vacuolar protein sortin 98.7 3.6E-07 1.2E-11 92.9 16.8 191 182-395 129-347 (444)
48 1xwi_A SKD1 protein; VPS4B, AA 98.6 2E-06 6.7E-11 83.6 19.7 185 185-395 10-225 (322)
49 3vfd_A Spastin; ATPase, microt 98.6 9.8E-07 3.4E-11 88.3 17.2 189 182-395 110-328 (389)
50 3u61_B DNA polymerase accessor 98.6 1.2E-07 4.2E-12 92.5 10.3 181 184-390 23-213 (324)
51 2p65_A Hypothetical protein PF 98.6 2.6E-07 8.8E-12 81.9 10.3 50 185-236 20-69 (187)
52 3cf0_A Transitional endoplasmi 98.6 1.8E-06 6.2E-11 83.1 17.0 179 185-388 13-223 (301)
53 1sxj_C Activator 1 40 kDa subu 98.5 9.7E-07 3.3E-11 86.6 13.1 182 185-389 23-208 (340)
54 3pxg_A Negative regulator of g 98.5 1.4E-06 4.8E-11 89.2 14.8 151 184-361 177-338 (468)
55 1in4_A RUVB, holliday junction 98.5 8.3E-06 2.8E-10 79.7 19.6 256 185-484 23-318 (334)
56 1a5t_A Delta prime, HOLB; zinc 98.5 2.1E-06 7.3E-11 83.9 15.3 181 193-392 8-204 (334)
57 1qvr_A CLPB protein; coiled co 98.4 2.5E-06 8.6E-11 94.1 15.2 51 184-236 167-217 (854)
58 3hu3_A Transitional endoplasmi 98.4 8.9E-07 3.1E-11 90.7 10.3 183 187-394 204-416 (489)
59 3n70_A Transport activator; si 98.4 5.4E-07 1.8E-11 76.6 6.9 48 188-235 2-49 (145)
60 1ofh_A ATP-dependent HSL prote 98.3 1.8E-06 6.1E-11 83.4 10.7 48 188-235 16-75 (310)
61 4b4t_J 26S protease regulatory 98.3 1.5E-05 5E-10 78.6 16.9 173 186-386 147-354 (405)
62 3pxi_A Negative regulator of g 98.3 7.5E-06 2.6E-10 89.2 14.4 151 184-361 177-338 (758)
63 1lv7_A FTSH; alpha/beta domain 98.3 1.2E-05 4.1E-10 75.3 13.8 184 184-392 9-224 (257)
64 4b4t_L 26S protease subunit RP 98.2 3.1E-05 1.1E-09 77.5 17.3 175 186-386 180-387 (437)
65 4b4t_H 26S protease regulatory 98.2 5.3E-05 1.8E-09 75.7 18.8 172 187-386 209-415 (467)
66 2r62_A Cell division protease 98.2 1.1E-06 3.8E-11 83.0 6.1 158 183-362 7-197 (268)
67 1ojl_A Transcriptional regulat 98.2 1.6E-05 5.5E-10 76.4 14.0 48 187-234 2-49 (304)
68 1r6b_X CLPA protein; AAA+, N-t 98.2 1E-05 3.5E-10 88.3 14.0 156 184-361 183-362 (758)
69 4fcw_A Chaperone protein CLPB; 98.2 8E-06 2.7E-10 78.9 11.6 50 188-237 18-74 (311)
70 4b4t_M 26S protease regulatory 98.2 2E-05 7E-10 78.7 14.4 176 185-386 179-387 (434)
71 3ec2_A DNA replication protein 98.2 3.7E-06 1.3E-10 74.2 8.1 49 187-235 10-63 (180)
72 2bjv_A PSP operon transcriptio 98.2 8E-06 2.7E-10 77.0 10.5 49 187-235 6-54 (265)
73 2w58_A DNAI, primosome compone 98.2 6.5E-06 2.2E-10 74.1 9.3 60 185-244 23-88 (202)
74 4b4t_K 26S protease regulatory 98.1 2.2E-05 7.5E-10 78.4 13.7 174 186-386 171-379 (428)
75 2ce7_A Cell division protein F 98.1 4.7E-05 1.6E-09 77.3 15.7 176 186-386 15-221 (476)
76 4b4t_I 26S protease regulatory 98.1 9.5E-05 3.3E-09 73.1 16.2 175 186-386 181-388 (437)
77 2c9o_A RUVB-like 1; hexameric 98.0 0.00012 4E-09 74.7 17.0 50 186-235 36-88 (456)
78 3co5_A Putative two-component 98.0 2E-06 6.7E-11 72.9 2.8 49 187-235 4-52 (143)
79 2gno_A DNA polymerase III, gam 98.0 3.4E-05 1.2E-09 74.0 11.7 146 191-361 1-152 (305)
80 3cf2_A TER ATPase, transitiona 97.9 2.7E-05 9.1E-10 83.8 9.0 174 187-386 204-407 (806)
81 3pxi_A Negative regulator of g 97.8 7E-05 2.4E-09 81.6 11.6 150 187-361 491-675 (758)
82 3t15_A Ribulose bisphosphate c 97.8 0.00013 4.4E-09 69.7 11.9 27 209-235 35-61 (293)
83 1eiw_A Hypothetical protein MT 97.7 3.2E-05 1.1E-09 61.3 4.8 72 10-105 3-74 (111)
84 3m6a_A ATP-dependent protease 97.7 0.00028 9.6E-09 73.4 13.3 49 189-237 83-135 (543)
85 2kjq_A DNAA-related protein; s 97.7 2.7E-05 9.2E-10 66.2 4.2 28 209-236 35-62 (149)
86 1ixz_A ATP-dependent metallopr 97.7 0.00024 8.2E-09 66.2 10.9 51 185-235 14-74 (254)
87 1um8_A ATP-dependent CLP prote 97.6 0.00027 9.3E-09 70.1 11.6 26 210-235 72-97 (376)
88 1iy2_A ATP-dependent metallopr 97.6 0.00041 1.4E-08 65.6 12.1 174 185-386 38-245 (278)
89 1ypw_A Transitional endoplasmi 97.6 0.00036 1.2E-08 76.1 13.2 154 186-362 203-386 (806)
90 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00079 2.7E-08 68.8 14.8 173 185-386 29-236 (499)
91 2x8a_A Nuclear valosin-contain 97.5 0.0023 7.9E-08 60.2 15.6 124 213-361 47-191 (274)
92 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00018 6.3E-09 78.3 7.9 48 187-234 458-512 (758)
93 1qvr_A CLPB protein; coiled co 97.3 0.00078 2.7E-08 74.3 11.4 49 188-236 559-614 (854)
94 2qgz_A Helicase loader, putati 97.3 0.00037 1.3E-08 67.0 7.0 50 195-244 136-187 (308)
95 1ye8_A Protein THEP1, hypothet 97.2 0.0078 2.7E-07 52.5 13.8 24 212-235 2-25 (178)
96 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0005 1.7E-08 62.8 6.2 47 198-244 11-57 (235)
97 3jvv_A Twitching mobility prot 97.1 0.00023 8E-09 69.6 3.9 111 210-332 123-234 (356)
98 3cf2_A TER ATPase, transitiona 97.1 0.00049 1.7E-08 74.1 6.7 172 187-385 477-682 (806)
99 2eyu_A Twitching motility prot 97.1 0.0015 5.2E-08 60.9 9.2 112 209-331 24-135 (261)
100 2cvh_A DNA repair and recombin 97.1 0.0012 4E-08 59.8 8.1 35 198-232 8-42 (220)
101 3hr8_A Protein RECA; alpha and 97.0 0.0014 4.7E-08 63.9 7.8 51 195-245 45-96 (356)
102 1jr3_D DNA polymerase III, del 97.0 0.0099 3.4E-07 57.9 13.9 166 198-392 8-184 (343)
103 3hyn_A Putative signal transdu 96.9 0.0042 1.4E-07 52.8 9.3 99 19-122 27-134 (189)
104 1g5t_A COB(I)alamin adenosyltr 96.9 0.00083 2.8E-08 59.1 4.9 115 211-330 29-164 (196)
105 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0017 5.7E-08 61.8 7.2 25 209-233 122-146 (331)
106 1vma_A Cell division protein F 96.9 0.018 6.2E-07 54.8 14.4 36 209-245 103-138 (306)
107 2r44_A Uncharacterized protein 96.9 0.00061 2.1E-08 66.2 4.2 46 187-236 27-72 (331)
108 2b8t_A Thymidine kinase; deoxy 96.8 0.00099 3.4E-08 60.4 4.8 109 209-329 11-126 (223)
109 4a1f_A DNAB helicase, replicat 96.7 0.0074 2.5E-07 58.2 10.4 56 189-245 26-81 (338)
110 3dzd_A Transcriptional regulat 96.7 0.026 8.7E-07 55.5 14.3 49 186-234 128-176 (368)
111 1v5w_A DMC1, meiotic recombina 96.7 0.0065 2.2E-07 59.2 9.9 38 197-234 109-146 (343)
112 3dm5_A SRP54, signal recogniti 96.7 0.038 1.3E-06 55.2 15.4 29 209-237 99-127 (443)
113 1j8m_F SRP54, signal recogniti 96.7 0.022 7.7E-07 54.0 13.1 28 210-237 98-125 (297)
114 3hws_A ATP-dependent CLP prote 96.6 0.0012 4.2E-08 65.0 4.5 47 189-235 17-76 (363)
115 2ewv_A Twitching motility prot 96.6 0.0012 4.1E-08 65.1 4.2 111 209-330 135-245 (372)
116 2px0_A Flagellar biosynthesis 96.6 0.031 1E-06 53.0 13.7 28 209-236 104-131 (296)
117 1xp8_A RECA protein, recombina 96.6 0.014 4.6E-07 57.2 11.4 53 193-245 56-109 (366)
118 3io5_A Recombination and repai 96.6 0.0034 1.2E-07 59.5 6.7 48 197-245 12-65 (333)
119 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.002 6.8E-08 65.9 5.5 44 188-235 23-66 (500)
120 1qhx_A CPT, protein (chloramph 96.6 0.0011 3.9E-08 57.7 3.2 25 211-235 4-28 (178)
121 1rz3_A Hypothetical protein rb 96.5 0.0027 9.4E-08 56.6 5.5 44 192-235 3-47 (201)
122 2xxa_A Signal recognition part 96.5 0.057 1.9E-06 54.1 15.5 29 209-237 99-127 (433)
123 1ypw_A Transitional endoplasmi 96.5 0.00088 3E-08 73.1 2.5 153 187-361 477-661 (806)
124 1g8p_A Magnesium-chelatase 38 96.4 0.0014 4.8E-08 64.1 3.3 51 183-235 20-70 (350)
125 2z43_A DNA repair and recombin 96.4 0.0045 1.5E-07 59.8 6.9 39 197-235 94-132 (324)
126 1ex7_A Guanylate kinase; subst 96.4 0.0012 4.1E-08 58.0 2.4 28 211-238 2-29 (186)
127 3c8u_A Fructokinase; YP_612366 96.4 0.0023 8E-08 57.4 4.4 28 208-235 20-47 (208)
128 1zu4_A FTSY; GTPase, signal re 96.4 0.0078 2.7E-07 57.8 8.1 36 209-245 104-139 (320)
129 3bh0_A DNAB-like replicative h 96.4 0.0055 1.9E-07 58.9 7.0 54 191-245 50-103 (315)
130 3e70_C DPA, signal recognition 96.4 0.043 1.5E-06 52.8 13.2 29 209-237 128-156 (328)
131 3kb2_A SPBC2 prophage-derived 96.3 0.0019 6.6E-08 55.8 3.2 25 211-235 2-26 (173)
132 1tue_A Replication protein E1; 96.3 0.0027 9.3E-08 56.1 4.1 42 194-236 43-84 (212)
133 2cbz_A Multidrug resistance-as 96.2 0.024 8.1E-07 51.9 9.9 27 209-235 30-56 (237)
134 3trf_A Shikimate kinase, SK; a 96.2 0.0026 9E-08 55.8 3.3 26 210-235 5-30 (185)
135 2pze_A Cystic fibrosis transme 96.2 0.033 1.1E-06 50.7 10.7 27 209-235 33-59 (229)
136 2nq2_C Hypothetical ABC transp 96.2 0.017 5.8E-07 53.4 8.9 26 209-234 30-55 (253)
137 2dr3_A UPF0273 protein PH0284; 96.1 0.0032 1.1E-07 58.0 3.9 47 199-245 12-58 (247)
138 3vaa_A Shikimate kinase, SK; s 96.1 0.0029 9.8E-08 56.4 3.4 25 210-234 25-49 (199)
139 3sr0_A Adenylate kinase; phosp 96.1 0.0048 1.6E-07 55.2 4.8 23 212-234 2-24 (206)
140 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0028 9.6E-08 61.3 3.5 106 210-330 171-276 (330)
141 1kgd_A CASK, peripheral plasma 96.1 0.0029 1E-07 55.4 3.3 26 210-235 5-30 (180)
142 3kl4_A SRP54, signal recogniti 96.1 0.015 5.3E-07 58.0 8.8 29 209-237 96-124 (433)
143 1odf_A YGR205W, hypothetical 3 96.1 0.0048 1.6E-07 58.4 4.9 29 208-236 29-57 (290)
144 1ly1_A Polynucleotide kinase; 96.1 0.0031 1E-07 55.0 3.3 22 211-232 3-24 (181)
145 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0095 3.2E-07 59.8 7.2 37 211-247 152-188 (473)
146 3upu_A ATP-dependent DNA helic 96.1 0.026 9.1E-07 57.2 10.7 28 211-238 46-73 (459)
147 3uie_A Adenylyl-sulfate kinase 96.1 0.0048 1.7E-07 54.9 4.6 27 209-235 24-50 (200)
148 1nks_A Adenylate kinase; therm 96.1 0.0046 1.6E-07 54.5 4.4 26 211-236 2-27 (194)
149 2zts_A Putative uncharacterize 96.0 0.0054 1.8E-07 56.5 4.9 36 200-235 20-55 (251)
150 3lw7_A Adenylate kinase relate 96.0 0.0031 1.1E-07 54.5 3.0 20 211-230 2-21 (179)
151 2r2a_A Uncharacterized protein 96.0 0.014 4.6E-07 51.9 7.2 22 212-233 7-28 (199)
152 1zp6_A Hypothetical protein AT 96.0 0.0036 1.2E-07 55.2 3.5 25 209-233 8-32 (191)
153 2rhm_A Putative kinase; P-loop 96.0 0.0042 1.4E-07 54.8 3.7 25 210-234 5-29 (193)
154 1kag_A SKI, shikimate kinase I 96.0 0.003 1E-07 54.7 2.6 25 211-235 5-29 (173)
155 2yvu_A Probable adenylyl-sulfa 96.0 0.0067 2.3E-07 53.2 4.9 28 209-236 12-39 (186)
156 3tlx_A Adenylate kinase 2; str 95.9 0.0046 1.6E-07 57.0 4.0 26 209-234 28-53 (243)
157 2pjz_A Hypothetical protein ST 95.9 0.032 1.1E-06 51.9 9.7 25 210-234 30-54 (263)
158 3tau_A Guanylate kinase, GMP k 95.9 0.0037 1.3E-07 56.1 3.2 28 209-236 7-34 (208)
159 3ice_A Transcription terminati 95.9 0.0028 9.4E-08 61.7 2.4 31 209-239 173-203 (422)
160 2bbs_A Cystic fibrosis transme 95.9 0.043 1.5E-06 51.8 10.6 27 209-235 63-89 (290)
161 3a00_A Guanylate kinase, GMP k 95.9 0.0039 1.4E-07 54.8 3.2 28 211-238 2-29 (186)
162 2r6a_A DNAB helicase, replicat 95.9 0.064 2.2E-06 54.3 12.6 54 191-245 185-239 (454)
163 4eun_A Thermoresistant glucoki 95.9 0.006 2E-07 54.3 4.2 26 209-234 28-53 (200)
164 3iij_A Coilin-interacting nucl 95.9 0.0038 1.3E-07 54.5 2.8 25 210-234 11-35 (180)
165 1kht_A Adenylate kinase; phosp 95.8 0.0042 1.4E-07 54.6 3.1 25 211-235 4-28 (192)
166 2ze6_A Isopentenyl transferase 95.8 0.0047 1.6E-07 57.3 3.5 25 211-235 2-26 (253)
167 2yhs_A FTSY, cell division pro 95.8 0.04 1.4E-06 55.6 10.4 36 209-245 292-327 (503)
168 1knq_A Gluconate kinase; ALFA/ 95.8 0.0061 2.1E-07 52.9 4.0 26 209-234 7-32 (175)
169 1zuh_A Shikimate kinase; alpha 95.8 0.0049 1.7E-07 53.1 3.2 26 210-235 7-32 (168)
170 1n0w_A DNA repair protein RAD5 95.8 0.0071 2.4E-07 55.5 4.5 37 197-233 11-47 (243)
171 2zr9_A Protein RECA, recombina 95.8 0.0059 2E-07 59.5 4.0 51 195-245 45-96 (349)
172 4a74_A DNA repair and recombin 95.8 0.0081 2.8E-07 54.5 4.8 37 198-234 13-49 (231)
173 1q57_A DNA primase/helicase; d 95.8 0.031 1.1E-06 57.4 9.7 47 198-245 231-278 (503)
174 1u94_A RECA protein, recombina 95.8 0.0063 2.1E-07 59.4 4.1 52 194-245 46-98 (356)
175 1gvn_B Zeta; postsegregational 95.7 0.0079 2.7E-07 56.9 4.7 26 209-234 32-57 (287)
176 2q6t_A DNAB replication FORK h 95.7 0.027 9.4E-07 56.8 9.0 70 190-267 181-251 (444)
177 1ny5_A Transcriptional regulat 95.7 0.025 8.4E-07 56.0 8.5 47 187-233 137-183 (387)
178 3t61_A Gluconokinase; PSI-biol 95.7 0.0038 1.3E-07 55.7 2.4 25 210-234 18-42 (202)
179 2c95_A Adenylate kinase 1; tra 95.7 0.0057 1.9E-07 54.1 3.4 25 210-234 9-33 (196)
180 3tqc_A Pantothenate kinase; bi 95.7 0.01 3.4E-07 56.9 5.3 47 189-235 69-117 (321)
181 1via_A Shikimate kinase; struc 95.7 0.0051 1.7E-07 53.4 3.0 24 212-235 6-29 (175)
182 2qor_A Guanylate kinase; phosp 95.7 0.0044 1.5E-07 55.4 2.6 26 210-235 12-37 (204)
183 3e1s_A Exodeoxyribonuclease V, 95.7 0.038 1.3E-06 57.6 9.9 28 210-237 204-231 (574)
184 2iyv_A Shikimate kinase, SK; t 95.7 0.0045 1.5E-07 54.2 2.5 25 211-235 3-27 (184)
185 1tev_A UMP-CMP kinase; ploop, 95.6 0.0062 2.1E-07 53.7 3.4 25 210-234 3-27 (196)
186 3ney_A 55 kDa erythrocyte memb 95.6 0.0061 2.1E-07 53.9 3.2 27 209-235 18-44 (197)
187 2vli_A Antibiotic resistance p 95.6 0.0047 1.6E-07 53.9 2.6 26 210-235 5-30 (183)
188 3cm0_A Adenylate kinase; ATP-b 95.6 0.007 2.4E-07 53.0 3.6 25 210-234 4-28 (186)
189 3tr0_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 54.2 3.3 25 210-234 7-31 (205)
190 1y63_A LMAJ004144AAA protein; 95.6 0.0067 2.3E-07 53.2 3.4 24 210-233 10-33 (184)
191 2plr_A DTMP kinase, probable t 95.6 0.0071 2.4E-07 54.2 3.6 28 210-237 4-31 (213)
192 1ukz_A Uridylate kinase; trans 95.6 0.0077 2.6E-07 53.6 3.8 26 209-234 14-39 (203)
193 2bwj_A Adenylate kinase 5; pho 95.6 0.0063 2.1E-07 53.9 3.2 26 210-235 12-37 (199)
194 2jaq_A Deoxyguanosine kinase; 95.6 0.0065 2.2E-07 54.1 3.2 24 212-235 2-25 (205)
195 1xjc_A MOBB protein homolog; s 95.6 0.0093 3.2E-07 51.3 4.0 28 210-237 4-31 (169)
196 1uj2_A Uridine-cytidine kinase 95.6 0.0071 2.4E-07 56.1 3.6 27 209-235 21-47 (252)
197 1e6c_A Shikimate kinase; phosp 95.6 0.0054 1.8E-07 53.0 2.6 25 211-235 3-27 (173)
198 1aky_A Adenylate kinase; ATP:A 95.5 0.007 2.4E-07 54.8 3.4 26 210-235 4-29 (220)
199 2j37_W Signal recognition part 95.5 0.17 5.8E-06 51.6 13.9 29 209-237 100-128 (504)
200 1nn5_A Similar to deoxythymidy 95.5 0.0092 3.1E-07 53.6 4.0 28 210-237 9-36 (215)
201 3umf_A Adenylate kinase; rossm 95.5 0.0082 2.8E-07 54.0 3.6 27 208-234 27-53 (217)
202 2ehv_A Hypothetical protein PH 95.5 0.0073 2.5E-07 55.6 3.4 25 209-233 29-53 (251)
203 2cdn_A Adenylate kinase; phosp 95.5 0.0088 3E-07 53.2 3.8 25 210-234 20-44 (201)
204 4gp7_A Metallophosphoesterase; 95.5 0.0074 2.5E-07 52.2 3.1 23 209-231 8-30 (171)
205 2j41_A Guanylate kinase; GMP, 95.5 0.0077 2.6E-07 53.7 3.3 25 210-234 6-30 (207)
206 3bgw_A DNAB-like replicative h 95.4 0.018 6E-07 58.1 6.2 53 191-244 179-231 (444)
207 1qf9_A UMP/CMP kinase, protein 95.4 0.0083 2.9E-07 52.7 3.5 26 210-235 6-31 (194)
208 1g41_A Heat shock protein HSLU 95.4 0.0087 3E-07 59.9 3.9 49 188-236 16-76 (444)
209 3asz_A Uridine kinase; cytidin 95.4 0.0088 3E-07 53.6 3.6 27 209-235 5-31 (211)
210 1u0j_A DNA replication protein 95.4 0.013 4.4E-07 54.3 4.5 39 196-234 90-128 (267)
211 2bdt_A BH3686; alpha-beta prot 95.4 0.0084 2.9E-07 52.7 3.3 22 211-232 3-24 (189)
212 3k1j_A LON protease, ATP-depen 95.4 0.0072 2.5E-07 63.7 3.3 49 185-237 39-87 (604)
213 2pt5_A Shikimate kinase, SK; a 95.4 0.0087 3E-07 51.4 3.2 24 212-235 2-25 (168)
214 2wwf_A Thymidilate kinase, put 95.3 0.0084 2.9E-07 53.7 3.2 27 210-236 10-36 (212)
215 2qt1_A Nicotinamide riboside k 95.3 0.01 3.5E-07 53.0 3.8 26 209-234 20-45 (207)
216 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0081 2.8E-07 58.0 3.0 30 209-238 23-52 (359)
217 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0095 3.2E-07 55.5 3.5 26 210-235 4-29 (260)
218 1cke_A CK, MSSA, protein (cyti 95.3 0.0087 3E-07 54.3 3.1 24 211-234 6-29 (227)
219 2pez_A Bifunctional 3'-phospho 95.3 0.011 3.7E-07 51.5 3.6 27 209-235 4-30 (179)
220 3p32_A Probable GTPase RV1496/ 95.3 0.022 7.4E-07 55.7 6.1 40 198-237 67-106 (355)
221 1uf9_A TT1252 protein; P-loop, 95.3 0.01 3.6E-07 52.6 3.5 25 209-233 7-31 (203)
222 2pbr_A DTMP kinase, thymidylat 95.2 0.0093 3.2E-07 52.5 3.1 24 212-235 2-25 (195)
223 2p5t_B PEZT; postsegregational 95.2 0.014 4.7E-07 54.1 4.4 27 209-235 31-57 (253)
224 3fb4_A Adenylate kinase; psych 95.2 0.0097 3.3E-07 53.6 3.2 23 212-234 2-24 (216)
225 2ck3_D ATP synthase subunit be 95.2 0.061 2.1E-06 53.8 9.1 56 209-267 152-207 (482)
226 1lvg_A Guanylate kinase, GMP k 95.2 0.0077 2.6E-07 53.5 2.4 26 210-235 4-29 (198)
227 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 53.4 3.4 27 209-235 15-41 (219)
228 2bbw_A Adenylate kinase 4, AK4 95.1 0.011 3.7E-07 54.6 3.3 25 210-234 27-51 (246)
229 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.7E-07 52.3 3.2 25 212-236 2-26 (197)
230 1zak_A Adenylate kinase; ATP:A 95.1 0.0096 3.3E-07 53.9 2.9 26 210-235 5-30 (222)
231 2if2_A Dephospho-COA kinase; a 95.1 0.01 3.4E-07 52.9 2.9 21 212-232 3-23 (204)
232 3a8t_A Adenylate isopentenyltr 95.1 0.012 4.2E-07 56.4 3.6 26 210-235 40-65 (339)
233 3cmu_A Protein RECA, recombina 95.1 0.023 7.9E-07 66.7 6.6 48 198-245 1414-1462(2050)
234 1gtv_A TMK, thymidylate kinase 95.1 0.0088 3E-07 53.7 2.5 25 212-236 2-26 (214)
235 3dl0_A Adenylate kinase; phosp 95.1 0.011 3.6E-07 53.3 3.1 23 212-234 2-24 (216)
236 2v54_A DTMP kinase, thymidylat 95.1 0.011 3.8E-07 52.5 3.2 25 210-234 4-28 (204)
237 2j9r_A Thymidine kinase; TK1, 95.1 0.047 1.6E-06 48.7 7.1 36 209-244 27-62 (214)
238 1rj9_A FTSY, signal recognitio 95.1 0.016 5.6E-07 55.1 4.4 36 209-245 101-136 (304)
239 1zd8_A GTP:AMP phosphotransfer 95.1 0.01 3.6E-07 53.9 3.0 25 210-234 7-31 (227)
240 1jjv_A Dephospho-COA kinase; P 95.1 0.011 3.9E-07 52.6 3.2 22 211-232 3-24 (206)
241 1pzn_A RAD51, DNA repair and r 95.1 0.019 6.6E-07 55.9 5.0 37 198-234 119-155 (349)
242 2qmh_A HPR kinase/phosphorylas 95.1 0.013 4.5E-07 51.4 3.4 25 210-234 34-58 (205)
243 3fwy_A Light-independent proto 95.1 0.017 5.7E-07 55.3 4.5 37 208-244 46-82 (314)
244 1cr0_A DNA primase/helicase; R 95.0 0.021 7.3E-07 54.1 5.2 29 209-237 34-62 (296)
245 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.6E-07 55.4 3.5 25 210-234 3-27 (322)
246 3be4_A Adenylate kinase; malar 95.0 0.011 3.6E-07 53.5 2.7 24 211-234 6-29 (217)
247 3foz_A TRNA delta(2)-isopenten 95.0 0.015 5.2E-07 54.9 3.8 26 209-234 9-34 (316)
248 1m7g_A Adenylylsulfate kinase; 94.9 0.015 5.2E-07 52.1 3.6 27 209-235 24-50 (211)
249 3l0o_A Transcription terminati 94.9 0.043 1.5E-06 53.4 6.8 30 209-238 174-203 (427)
250 4e22_A Cytidylate kinase; P-lo 94.9 0.014 4.8E-07 54.0 3.5 27 209-235 26-52 (252)
251 1p9r_A General secretion pathw 94.9 0.062 2.1E-06 53.5 8.3 86 209-308 166-253 (418)
252 1znw_A Guanylate kinase, GMP k 94.9 0.013 4.5E-07 52.4 3.1 26 209-234 19-44 (207)
253 1fx0_B ATP synthase beta chain 94.9 0.025 8.5E-07 56.9 5.3 56 209-267 164-219 (498)
254 2v3c_C SRP54, signal recogniti 94.9 0.034 1.2E-06 55.7 6.4 28 210-237 99-126 (432)
255 1puj_A YLQF, conserved hypothe 94.9 0.22 7.6E-06 46.7 11.7 35 55-90 13-47 (282)
256 1z6g_A Guanylate kinase; struc 94.9 0.011 3.9E-07 53.3 2.6 26 209-234 22-47 (218)
257 2grj_A Dephospho-COA kinase; T 94.9 0.015 5.2E-07 51.3 3.3 26 209-234 11-36 (192)
258 2jeo_A Uridine-cytidine kinase 94.8 0.016 5.5E-07 53.3 3.6 26 209-234 24-49 (245)
259 3d3q_A TRNA delta(2)-isopenten 94.8 0.015 5E-07 56.0 3.4 25 211-235 8-32 (340)
260 3crm_A TRNA delta(2)-isopenten 94.8 0.015 5E-07 55.6 3.3 26 210-235 5-30 (323)
261 1a7j_A Phosphoribulokinase; tr 94.8 0.011 3.7E-07 56.1 2.2 27 209-235 4-30 (290)
262 2orw_A Thymidine kinase; TMTK, 94.8 0.022 7.4E-07 49.9 4.1 25 211-235 4-28 (184)
263 3aez_A Pantothenate kinase; tr 94.8 0.016 5.6E-07 55.4 3.5 28 208-235 88-115 (312)
264 1htw_A HI0065; nucleotide-bind 94.8 0.018 6.2E-07 49.0 3.5 26 209-234 32-57 (158)
265 1w36_D RECD, exodeoxyribonucle 94.7 0.13 4.5E-06 54.0 10.6 26 210-235 164-189 (608)
266 3r20_A Cytidylate kinase; stru 94.7 0.017 5.7E-07 52.6 3.3 26 210-235 9-34 (233)
267 3nwj_A ATSK2; P loop, shikimat 94.7 0.014 4.7E-07 53.9 2.8 26 210-235 48-73 (250)
268 2r8r_A Sensor protein; KDPD, P 94.7 0.031 1E-06 50.3 4.8 27 211-237 7-33 (228)
269 2i1q_A DNA repair and recombin 94.6 0.029 9.9E-07 54.0 5.0 38 196-233 84-121 (322)
270 3ake_A Cytidylate kinase; CMP 94.6 0.019 6.4E-07 51.2 3.3 24 212-235 4-27 (208)
271 3cmw_A Protein RECA, recombina 94.6 0.055 1.9E-06 62.8 7.7 55 191-245 712-767 (1706)
272 2xb4_A Adenylate kinase; ATP-b 94.6 0.018 6.1E-07 52.2 3.1 23 212-234 2-24 (223)
273 1e4v_A Adenylate kinase; trans 94.6 0.018 6.1E-07 51.8 3.1 23 212-234 2-24 (214)
274 3b9q_A Chloroplast SRP recepto 94.5 0.026 8.8E-07 53.7 4.3 28 209-236 99-126 (302)
275 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.2E-07 52.1 3.5 26 210-235 16-41 (233)
276 2ffh_A Protein (FFH); SRP54, s 94.5 0.099 3.4E-06 52.0 8.6 29 209-237 97-125 (425)
277 2hf9_A Probable hydrogenase ni 94.5 0.038 1.3E-06 49.8 5.2 29 209-237 37-65 (226)
278 1vht_A Dephospho-COA kinase; s 94.5 0.022 7.7E-07 51.2 3.6 23 210-232 4-26 (218)
279 2f6r_A COA synthase, bifunctio 94.5 0.021 7.3E-07 53.7 3.5 24 209-232 74-97 (281)
280 3lnc_A Guanylate kinase, GMP k 94.5 0.014 4.7E-07 53.3 2.1 25 210-234 27-52 (231)
281 1np6_A Molybdopterin-guanine d 94.4 0.028 9.7E-07 48.6 3.9 27 210-236 6-32 (174)
282 3lda_A DNA repair protein RAD5 94.4 0.018 6.2E-07 57.0 3.0 37 196-232 164-200 (400)
283 3vkw_A Replicase large subunit 94.4 0.17 5.8E-06 50.4 9.9 25 208-232 159-183 (446)
284 2wsm_A Hydrogenase expression/ 94.4 0.026 9E-07 50.8 3.8 41 195-237 17-57 (221)
285 2f1r_A Molybdopterin-guanine d 94.4 0.016 5.5E-07 50.0 2.2 27 211-237 3-29 (171)
286 1sq5_A Pantothenate kinase; P- 94.4 0.038 1.3E-06 52.8 5.0 28 208-235 78-105 (308)
287 3zvl_A Bifunctional polynucleo 94.3 0.024 8.2E-07 56.7 3.6 26 209-234 257-282 (416)
288 1svm_A Large T antigen; AAA+ f 94.3 0.03 1E-06 54.9 4.1 28 207-234 166-193 (377)
289 3tif_A Uncharacterized ABC tra 94.3 0.029 1E-06 51.2 3.8 25 209-233 30-54 (235)
290 1ltq_A Polynucleotide kinase; 94.2 0.025 8.5E-07 53.8 3.3 23 211-233 3-25 (301)
291 1g8f_A Sulfate adenylyltransfe 94.2 0.036 1.2E-06 56.6 4.6 48 189-236 374-421 (511)
292 4eaq_A DTMP kinase, thymidylat 94.2 0.03 1E-06 50.9 3.7 28 209-236 25-52 (229)
293 2i3b_A HCR-ntpase, human cance 94.1 0.021 7.2E-07 50.2 2.4 24 212-235 3-26 (189)
294 2og2_A Putative signal recogni 94.1 0.036 1.2E-06 54.0 4.3 28 209-236 156-183 (359)
295 3b5x_A Lipid A export ATP-bind 94.0 0.23 7.7E-06 52.0 10.6 25 209-233 368-392 (582)
296 1yrb_A ATP(GTP)binding protein 94.0 0.049 1.7E-06 50.5 4.9 26 210-235 14-39 (262)
297 3eph_A TRNA isopentenyltransfe 94.0 0.03 1E-06 55.0 3.5 25 211-235 3-27 (409)
298 1nlf_A Regulatory protein REPA 94.0 0.038 1.3E-06 51.9 4.1 27 209-235 29-55 (279)
299 3ozx_A RNAse L inhibitor; ATP 93.9 0.19 6.4E-06 51.9 9.4 26 209-234 24-49 (538)
300 2pcj_A ABC transporter, lipopr 93.8 0.036 1.2E-06 50.2 3.6 25 209-233 29-53 (224)
301 2qi9_C Vitamin B12 import ATP- 93.8 0.04 1.4E-06 50.8 3.9 27 210-236 26-52 (249)
302 3cmu_A Protein RECA, recombina 93.8 0.12 4E-06 61.0 8.5 57 189-245 361-418 (2050)
303 3end_A Light-independent proto 93.8 0.046 1.6E-06 52.1 4.5 29 209-237 40-68 (307)
304 1b0u_A Histidine permease; ABC 93.8 0.04 1.4E-06 51.3 3.8 26 209-234 31-56 (262)
305 2fz4_A DNA repair protein RAD2 93.8 0.48 1.7E-05 43.0 11.1 40 190-234 93-132 (237)
306 3b85_A Phosphate starvation-in 93.7 0.029 9.9E-07 50.2 2.7 24 210-233 22-45 (208)
307 1ls1_A Signal recognition part 93.7 0.051 1.8E-06 51.5 4.5 36 209-245 97-132 (295)
308 1cp2_A CP2, nitrogenase iron p 93.7 0.05 1.7E-06 50.6 4.4 27 211-237 2-28 (269)
309 1mv5_A LMRA, multidrug resista 93.7 0.05 1.7E-06 50.0 4.2 25 209-233 27-51 (243)
310 2onk_A Molybdate/tungstate ABC 93.7 0.042 1.4E-06 50.3 3.7 24 211-234 25-48 (240)
311 2olj_A Amino acid ABC transpor 93.7 0.043 1.5E-06 51.0 3.8 26 209-234 49-74 (263)
312 3tqf_A HPR(Ser) kinase; transf 93.6 0.043 1.5E-06 46.9 3.4 24 210-233 16-39 (181)
313 2v9p_A Replication protein E1; 93.6 0.034 1.2E-06 52.7 3.1 27 208-234 124-150 (305)
314 1q3t_A Cytidylate kinase; nucl 93.6 0.042 1.4E-06 50.2 3.5 26 209-234 15-40 (236)
315 4edh_A DTMP kinase, thymidylat 93.6 0.12 4E-06 46.4 6.3 28 210-237 6-33 (213)
316 1t9h_A YLOQ, probable GTPase E 93.5 0.11 3.7E-06 49.4 6.4 24 211-234 174-197 (307)
317 2ocp_A DGK, deoxyguanosine kin 93.5 0.041 1.4E-06 50.4 3.4 26 210-235 2-27 (241)
318 2p67_A LAO/AO transport system 93.5 0.082 2.8E-06 51.2 5.6 29 208-236 54-82 (341)
319 3cr8_A Sulfate adenylyltranfer 93.5 0.052 1.8E-06 56.1 4.4 28 209-236 368-395 (552)
320 2qm8_A GTPase/ATPase; G protei 93.5 0.087 3E-06 50.9 5.8 28 208-235 53-80 (337)
321 4g1u_C Hemin import ATP-bindin 93.5 0.046 1.6E-06 50.9 3.6 25 209-233 36-60 (266)
322 2ghi_A Transport protein; mult 93.4 0.04 1.4E-06 51.2 3.1 26 209-234 45-70 (260)
323 3gfo_A Cobalt import ATP-bindi 93.4 0.046 1.6E-06 51.2 3.6 24 210-233 34-57 (275)
324 4dzz_A Plasmid partitioning pr 93.4 0.094 3.2E-06 46.4 5.6 35 211-245 2-37 (206)
325 2ixe_A Antigen peptide transpo 93.4 0.051 1.7E-06 50.8 3.8 25 209-233 44-68 (271)
326 1g6h_A High-affinity branched- 93.4 0.05 1.7E-06 50.4 3.7 25 209-233 32-56 (257)
327 1sgw_A Putative ABC transporte 93.4 0.042 1.4E-06 49.3 3.1 25 210-234 35-59 (214)
328 2zu0_C Probable ATP-dependent 93.4 0.043 1.5E-06 51.2 3.2 25 209-233 45-69 (267)
329 2zej_A Dardarin, leucine-rich 93.3 0.036 1.2E-06 48.3 2.6 22 212-233 4-25 (184)
330 2ff7_A Alpha-hemolysin translo 93.3 0.051 1.8E-06 50.0 3.7 25 209-233 34-58 (247)
331 1vpl_A ABC transporter, ATP-bi 93.3 0.054 1.8E-06 50.1 3.8 25 209-233 40-64 (256)
332 1ji0_A ABC transporter; ATP bi 93.3 0.052 1.8E-06 49.7 3.7 25 209-233 31-55 (240)
333 3zq6_A Putative arsenical pump 93.3 0.063 2.2E-06 51.6 4.5 35 210-244 14-48 (324)
334 3f9v_A Minichromosome maintena 93.3 0.031 1E-06 58.6 2.4 49 187-235 295-352 (595)
335 2iw3_A Elongation factor 3A; a 93.3 0.22 7.5E-06 54.7 9.0 123 209-335 460-611 (986)
336 2d2e_A SUFC protein; ABC-ATPas 93.2 0.045 1.5E-06 50.5 3.1 25 209-233 28-52 (250)
337 1oix_A RAS-related protein RAB 93.2 0.044 1.5E-06 48.1 2.9 24 210-233 29-52 (191)
338 2yz2_A Putative ABC transporte 93.2 0.046 1.6E-06 50.9 3.1 25 209-233 32-56 (266)
339 2afh_E Nitrogenase iron protei 93.1 0.064 2.2E-06 50.6 4.2 27 211-237 3-29 (289)
340 2wji_A Ferrous iron transport 93.1 0.051 1.7E-06 46.3 3.1 23 211-233 4-26 (165)
341 2ged_A SR-beta, signal recogni 93.1 0.055 1.9E-06 47.3 3.4 25 209-233 47-71 (193)
342 2dyk_A GTP-binding protein; GT 93.1 0.054 1.8E-06 45.6 3.2 23 211-233 2-24 (161)
343 2vp4_A Deoxynucleoside kinase; 93.1 0.045 1.5E-06 49.8 2.9 25 209-233 19-43 (230)
344 2axn_A 6-phosphofructo-2-kinas 93.1 0.071 2.4E-06 54.8 4.6 29 209-237 34-62 (520)
345 3llm_A ATP-dependent RNA helic 93.0 0.6 2.1E-05 42.2 10.5 21 211-231 77-97 (235)
346 3nh6_A ATP-binding cassette SU 93.0 0.056 1.9E-06 51.4 3.5 25 209-233 79-103 (306)
347 2ihy_A ABC transporter, ATP-bi 93.0 0.059 2E-06 50.5 3.7 26 209-234 46-71 (279)
348 2f9l_A RAB11B, member RAS onco 93.0 0.046 1.6E-06 48.2 2.8 23 211-233 6-28 (199)
349 3lv8_A DTMP kinase, thymidylat 93.0 0.12 4.1E-06 47.0 5.5 28 210-237 27-54 (236)
350 3ld9_A DTMP kinase, thymidylat 93.0 0.15 5.1E-06 45.9 6.1 28 209-236 20-47 (223)
351 3ug7_A Arsenical pump-driving 92.9 0.1 3.6E-06 50.6 5.3 31 207-237 23-53 (349)
352 1p5z_B DCK, deoxycytidine kina 92.8 0.038 1.3E-06 51.4 2.1 27 209-235 23-49 (263)
353 3fdi_A Uncharacterized protein 92.8 0.058 2E-06 47.9 3.2 26 210-235 6-31 (201)
354 1m8p_A Sulfate adenylyltransfe 92.8 0.098 3.4E-06 54.4 5.3 28 209-236 395-422 (573)
355 2gks_A Bifunctional SAT/APS ki 92.8 0.1 3.5E-06 53.9 5.4 46 191-236 353-398 (546)
356 3v9p_A DTMP kinase, thymidylat 92.8 0.13 4.4E-06 46.6 5.4 28 210-237 25-52 (227)
357 2iut_A DNA translocase FTSK; n 92.8 0.5 1.7E-05 48.6 10.3 63 292-358 344-420 (574)
358 4hlc_A DTMP kinase, thymidylat 92.7 0.087 3E-06 46.9 4.2 29 211-239 3-31 (205)
359 3kjh_A CO dehydrogenase/acetyl 92.7 0.075 2.6E-06 48.7 3.8 34 213-247 3-36 (254)
360 1fzq_A ADP-ribosylation factor 92.6 0.083 2.8E-06 45.8 3.8 25 209-233 15-39 (181)
361 4tmk_A Protein (thymidylate ki 92.6 0.15 5.1E-06 45.6 5.5 28 210-237 3-30 (213)
362 3fvq_A Fe(3+) IONS import ATP- 92.6 0.062 2.1E-06 52.2 3.2 25 209-233 29-53 (359)
363 1tq4_A IIGP1, interferon-induc 92.5 0.052 1.8E-06 53.9 2.6 25 209-233 68-92 (413)
364 2ce2_X GTPase HRAS; signaling 92.5 0.06 2.1E-06 45.3 2.7 22 212-233 5-26 (166)
365 2www_A Methylmalonic aciduria 92.5 0.1 3.4E-06 50.8 4.6 27 209-235 73-99 (349)
366 2h92_A Cytidylate kinase; ross 92.5 0.058 2E-06 48.5 2.7 24 211-234 4-27 (219)
367 2wjg_A FEOB, ferrous iron tran 92.4 0.076 2.6E-06 46.1 3.4 24 210-233 7-30 (188)
368 3gmt_A Adenylate kinase; ssgci 92.4 0.065 2.2E-06 48.4 2.9 24 211-234 9-32 (230)
369 3cmw_A Protein RECA, recombina 92.4 0.15 5E-06 59.3 6.4 93 198-300 1418-1518(1706)
370 1svi_A GTP-binding protein YSX 92.4 0.049 1.7E-06 47.7 2.0 25 209-233 22-46 (195)
371 2orv_A Thymidine kinase; TP4A 92.3 0.19 6.5E-06 45.2 5.8 105 210-329 19-126 (234)
372 3ea0_A ATPase, para family; al 92.3 0.12 4.1E-06 47.1 4.7 38 210-247 4-42 (245)
373 2r9v_A ATP synthase subunit al 92.3 0.22 7.5E-06 50.2 6.8 52 210-266 175-227 (515)
374 3sop_A Neuronal-specific septi 92.2 0.067 2.3E-06 49.9 2.9 23 212-234 4-26 (270)
375 2lkc_A Translation initiation 92.2 0.085 2.9E-06 45.2 3.4 25 209-233 7-31 (178)
376 3iqw_A Tail-anchored protein t 92.2 0.12 4.2E-06 49.7 4.8 37 209-245 15-51 (334)
377 3vr4_D V-type sodium ATPase su 92.2 0.086 2.9E-06 52.4 3.7 54 210-266 151-207 (465)
378 3thx_A DNA mismatch repair pro 92.2 0.19 6.5E-06 55.2 6.8 23 209-231 661-683 (934)
379 2nzj_A GTP-binding protein REM 92.2 0.087 3E-06 45.0 3.4 24 210-233 4-27 (175)
380 3io3_A DEHA2D07832P; chaperone 92.2 0.12 4E-06 50.1 4.6 38 208-245 16-55 (348)
381 1z2a_A RAS-related protein RAB 92.2 0.088 3E-06 44.5 3.4 24 210-233 5-28 (168)
382 4gzl_A RAS-related C3 botulinu 92.2 0.081 2.8E-06 46.9 3.2 41 191-233 13-53 (204)
383 2yyz_A Sugar ABC transporter, 92.1 0.077 2.6E-06 51.6 3.3 25 209-233 28-52 (359)
384 3d31_A Sulfate/molybdate ABC t 92.1 0.072 2.4E-06 51.6 3.0 25 209-233 25-49 (348)
385 1kao_A RAP2A; GTP-binding prot 92.1 0.074 2.5E-06 44.9 2.8 22 212-233 5-26 (167)
386 1tf7_A KAIC; homohexamer, hexa 92.1 0.1 3.6E-06 53.8 4.4 40 198-237 269-308 (525)
387 2yv5_A YJEQ protein; hydrolase 92.1 0.1 3.5E-06 49.5 4.0 34 196-235 156-189 (302)
388 3rlf_A Maltose/maltodextrin im 92.1 0.079 2.7E-06 51.8 3.2 25 209-233 28-52 (381)
389 2gj8_A MNME, tRNA modification 92.1 0.072 2.5E-06 45.7 2.7 23 211-233 5-27 (172)
390 3kta_A Chromosome segregation 92.1 0.077 2.6E-06 46.0 2.9 23 212-234 28-50 (182)
391 3q85_A GTP-binding protein REM 92.1 0.072 2.5E-06 45.2 2.7 21 212-232 4-24 (169)
392 2it1_A 362AA long hypothetical 92.1 0.08 2.7E-06 51.6 3.2 25 209-233 28-52 (362)
393 2erx_A GTP-binding protein DI- 92.0 0.075 2.6E-06 45.1 2.8 23 211-233 4-26 (172)
394 1oxx_K GLCV, glucose, ABC tran 92.0 0.069 2.4E-06 51.9 2.7 25 209-233 30-54 (353)
395 3hdt_A Putative kinase; struct 92.0 0.1 3.5E-06 47.0 3.7 26 210-235 14-39 (223)
396 3con_A GTPase NRAS; structural 92.0 0.077 2.6E-06 46.2 2.8 23 211-233 22-44 (190)
397 1z08_A RAS-related protein RAB 91.9 0.078 2.7E-06 45.0 2.8 24 210-233 6-29 (170)
398 1bif_A 6-phosphofructo-2-kinas 91.9 0.12 4E-06 52.6 4.5 28 210-237 39-66 (469)
399 1nrj_B SR-beta, signal recogni 91.9 0.092 3.2E-06 46.9 3.3 26 209-234 11-36 (218)
400 1v43_A Sugar-binding transport 91.9 0.086 2.9E-06 51.5 3.2 24 209-232 36-59 (372)
401 1ek0_A Protein (GTP-binding pr 91.9 0.082 2.8E-06 44.8 2.8 22 212-233 5-26 (170)
402 1m7b_A RND3/RHOE small GTP-bin 91.8 0.078 2.7E-06 46.0 2.7 24 210-233 7-30 (184)
403 1z47_A CYSA, putative ABC-tran 91.8 0.083 2.9E-06 51.2 3.1 25 209-233 40-64 (355)
404 1c1y_A RAS-related protein RAP 91.8 0.083 2.8E-06 44.7 2.8 22 212-233 5-26 (167)
405 3pqc_A Probable GTP-binding pr 91.8 0.1 3.4E-06 45.5 3.4 25 209-233 22-46 (195)
406 3q72_A GTP-binding protein RAD 91.8 0.076 2.6E-06 44.9 2.6 21 212-232 4-24 (166)
407 1u8z_A RAS-related protein RAL 91.8 0.11 3.9E-06 43.7 3.7 23 211-233 5-27 (168)
408 2c61_A A-type ATP synthase non 91.8 0.17 6E-06 50.5 5.4 55 210-267 152-209 (469)
409 1z0j_A RAB-22, RAS-related pro 91.8 0.083 2.8E-06 44.8 2.8 23 211-233 7-29 (170)
410 1r8s_A ADP-ribosylation factor 91.8 0.084 2.9E-06 44.5 2.8 21 213-233 3-23 (164)
411 3ihw_A Centg3; RAS, centaurin, 91.8 0.082 2.8E-06 46.0 2.8 24 210-233 20-43 (184)
412 3gqb_B V-type ATP synthase bet 91.8 0.11 3.9E-06 51.6 4.0 27 210-236 147-173 (464)
413 1nij_A Hypothetical protein YJ 91.8 0.083 2.9E-06 50.6 3.0 26 209-234 3-28 (318)
414 1lw7_A Transcriptional regulat 91.8 0.091 3.1E-06 51.5 3.4 27 210-236 170-196 (365)
415 3tmk_A Thymidylate kinase; pho 91.8 0.1 3.6E-06 46.7 3.4 27 210-236 5-31 (216)
416 3tui_C Methionine import ATP-b 91.8 0.11 3.9E-06 50.4 3.9 25 209-233 53-77 (366)
417 1x6v_B Bifunctional 3'-phospho 91.7 0.11 3.7E-06 54.4 4.0 27 209-235 51-77 (630)
418 1c9k_A COBU, adenosylcobinamid 91.7 0.07 2.4E-06 46.2 2.2 21 213-233 2-22 (180)
419 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.085 2.9E-06 45.2 2.8 24 210-233 7-30 (177)
420 1g16_A RAS-related protein SEC 91.7 0.083 2.9E-06 44.8 2.7 23 211-233 4-26 (170)
421 1ky3_A GTP-binding protein YPT 91.7 0.085 2.9E-06 45.3 2.8 25 209-233 7-31 (182)
422 2hxs_A RAB-26, RAS-related pro 91.7 0.093 3.2E-06 45.0 3.0 24 210-233 6-29 (178)
423 2ck3_A ATP synthase subunit al 91.6 0.22 7.5E-06 50.2 5.9 55 209-266 161-222 (510)
424 2qe7_A ATP synthase subunit al 91.6 0.34 1.1E-05 48.8 7.2 53 209-266 161-214 (502)
425 3cio_A ETK, tyrosine-protein k 91.6 0.18 6.2E-06 47.7 5.1 37 209-245 103-140 (299)
426 2fn4_A P23, RAS-related protei 91.6 0.12 4.2E-06 44.3 3.7 25 209-233 8-32 (181)
427 3hjn_A DTMP kinase, thymidylat 91.6 0.26 8.9E-06 43.4 5.8 32 212-243 2-33 (197)
428 3bfv_A CAPA1, CAPB2, membrane 91.6 0.22 7.6E-06 46.4 5.6 37 209-245 81-118 (271)
429 1r2q_A RAS-related protein RAB 91.5 0.093 3.2E-06 44.4 2.8 22 211-232 7-28 (170)
430 2iwr_A Centaurin gamma 1; ANK 91.5 0.08 2.7E-06 45.5 2.4 24 210-233 7-30 (178)
431 2cxx_A Probable GTP-binding pr 91.5 0.086 2.9E-06 45.8 2.6 22 212-233 3-24 (190)
432 2gza_A Type IV secretion syste 91.5 0.098 3.3E-06 51.1 3.2 35 210-245 175-209 (361)
433 1g29_1 MALK, maltose transport 91.5 0.095 3.3E-06 51.3 3.1 25 209-233 28-52 (372)
434 3c5c_A RAS-like protein 12; GD 91.5 0.093 3.2E-06 45.7 2.8 24 210-233 21-44 (187)
435 2cjw_A GTP-binding protein GEM 91.5 0.092 3.2E-06 46.0 2.8 22 211-232 7-28 (192)
436 1m2o_B GTP-binding protein SAR 91.5 0.091 3.1E-06 45.9 2.7 23 211-233 24-46 (190)
437 1xx6_A Thymidine kinase; NESG, 91.4 0.18 6E-06 44.3 4.5 29 209-237 7-35 (191)
438 3fkq_A NTRC-like two-domain pr 91.4 0.16 5.4E-06 49.9 4.7 37 209-245 142-179 (373)
439 1fx0_A ATP synthase alpha chai 91.4 0.11 3.9E-06 52.2 3.6 86 209-301 162-265 (507)
440 3t1o_A Gliding protein MGLA; G 91.4 0.11 3.9E-06 45.2 3.3 28 210-237 14-41 (198)
441 1pui_A ENGB, probable GTP-bind 91.4 0.063 2.2E-06 47.7 1.6 25 209-233 25-49 (210)
442 1z0f_A RAB14, member RAS oncog 91.3 0.1 3.4E-06 44.7 2.8 24 210-233 15-38 (179)
443 3gd7_A Fusion complex of cysti 91.3 0.1 3.5E-06 51.3 3.2 25 209-233 46-70 (390)
444 3bc1_A RAS-related protein RAB 91.3 0.1 3.4E-06 45.4 2.8 24 210-233 11-34 (195)
445 1f6b_A SAR1; gtpases, N-termin 91.2 0.08 2.7E-06 46.7 2.1 23 210-232 25-47 (198)
446 3kkq_A RAS-related protein M-R 91.2 0.1 3.6E-06 45.0 2.8 24 210-233 18-41 (183)
447 2y8e_A RAB-protein 6, GH09086P 91.1 0.1 3.5E-06 44.6 2.7 22 211-232 15-36 (179)
448 4dsu_A GTPase KRAS, isoform 2B 91.1 0.11 3.6E-06 45.1 2.8 23 211-233 5-27 (189)
449 1upt_A ARL1, ADP-ribosylation 91.1 0.14 4.8E-06 43.4 3.5 24 210-233 7-30 (171)
450 2oil_A CATX-8, RAS-related pro 91.1 0.11 3.7E-06 45.4 2.8 24 210-233 25-48 (193)
451 3cbq_A GTP-binding protein REM 91.1 0.085 2.9E-06 46.4 2.1 23 210-232 23-45 (195)
452 3tw8_B RAS-related protein RAB 91.1 0.11 3.7E-06 44.6 2.8 24 210-233 9-32 (181)
453 2bme_A RAB4A, RAS-related prot 91.1 0.11 3.6E-06 45.0 2.7 24 210-233 10-33 (186)
454 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.11 3.8E-06 44.8 2.8 23 211-233 6-28 (186)
455 3ez2_A Plasmid partition prote 91.0 0.29 9.8E-06 48.5 6.1 28 209-236 107-135 (398)
456 4bas_A ADP-ribosylation factor 90.9 0.12 4.1E-06 45.2 3.0 25 209-233 16-40 (199)
457 2a9k_A RAS-related protein RAL 90.9 0.12 3.9E-06 44.7 2.8 24 210-233 18-41 (187)
458 2efe_B Small GTP-binding prote 90.9 0.11 3.9E-06 44.5 2.8 24 210-233 12-35 (181)
459 3bwd_D RAC-like GTP-binding pr 90.9 0.12 4E-06 44.5 2.8 23 211-233 9-31 (182)
460 2obl_A ESCN; ATPase, hydrolase 90.9 0.16 5.6E-06 49.1 4.1 29 209-237 70-98 (347)
461 1h65_A Chloroplast outer envel 90.8 0.19 6.5E-06 46.8 4.4 25 209-233 38-62 (270)
462 2atv_A RERG, RAS-like estrogen 90.8 0.12 4E-06 45.4 2.8 24 210-233 28-51 (196)
463 2g6b_A RAS-related protein RAB 90.8 0.12 4.1E-06 44.4 2.8 24 210-233 10-33 (180)
464 2oze_A ORF delta'; para, walke 90.8 0.12 4.1E-06 48.9 3.0 39 196-237 23-64 (298)
465 3def_A T7I23.11 protein; chlor 90.8 0.19 6.6E-06 46.5 4.4 25 209-233 35-59 (262)
466 2g3y_A GTP-binding protein GEM 90.8 0.12 4E-06 46.3 2.7 23 210-232 37-59 (211)
467 3t5g_A GTP-binding protein RHE 90.8 0.12 4E-06 44.6 2.7 23 210-232 6-28 (181)
468 3clv_A RAB5 protein, putative; 90.7 0.12 4.1E-06 45.3 2.8 24 210-233 7-30 (208)
469 2ew1_A RAS-related protein RAB 90.7 0.12 4E-06 45.8 2.7 24 210-233 26-49 (201)
470 1gwn_A RHO-related GTP-binding 90.7 0.12 4.1E-06 45.9 2.7 24 210-233 28-51 (205)
471 3dz8_A RAS-related protein RAB 90.7 0.12 4.2E-06 45.0 2.8 24 210-233 23-46 (191)
472 2woo_A ATPase GET3; tail-ancho 90.7 0.21 7.1E-06 48.1 4.6 36 209-244 18-53 (329)
473 1ksh_A ARF-like protein 2; sma 90.7 0.12 4.1E-06 44.7 2.7 25 209-233 17-41 (186)
474 1zd9_A ADP-ribosylation factor 90.7 0.12 4.3E-06 44.9 2.8 24 210-233 22-45 (188)
475 1zbd_A Rabphilin-3A; G protein 90.7 0.12 4.2E-06 45.4 2.8 24 210-233 8-31 (203)
476 3ch4_B Pmkase, phosphomevalona 90.6 0.19 6.4E-06 44.3 3.9 27 208-234 9-35 (202)
477 2bov_A RAla, RAS-related prote 90.6 0.12 4.2E-06 45.4 2.8 24 210-233 14-37 (206)
478 2fg5_A RAB-22B, RAS-related pr 90.6 0.12 4.2E-06 45.1 2.7 24 210-233 23-46 (192)
479 1vg8_A RAS-related protein RAB 90.6 0.12 4.3E-06 45.5 2.8 24 210-233 8-31 (207)
480 3llu_A RAS-related GTP-binding 90.6 0.12 4.2E-06 45.3 2.7 24 210-233 20-43 (196)
481 2gf9_A RAS-related protein RAB 90.6 0.13 4.4E-06 44.7 2.8 24 210-233 22-45 (189)
482 2qu8_A Putative nucleolar GTP- 90.6 0.16 5.6E-06 45.7 3.6 25 209-233 28-52 (228)
483 2fh5_B SR-beta, signal recogni 90.5 0.13 4.4E-06 45.8 2.8 24 210-233 7-30 (214)
484 1u0l_A Probable GTPase ENGC; p 90.5 0.16 5.6E-06 48.1 3.7 35 196-235 160-194 (301)
485 2a5j_A RAS-related protein RAB 90.5 0.13 4.5E-06 44.8 2.8 24 210-233 21-44 (191)
486 3reg_A RHO-like small GTPase; 90.5 0.13 4.5E-06 44.9 2.8 24 210-233 23-46 (194)
487 3oes_A GTPase rhebl1; small GT 90.4 0.13 4.4E-06 45.3 2.7 24 210-233 24-47 (201)
488 4dkx_A RAS-related protein RAB 90.4 0.13 4.5E-06 46.1 2.8 22 212-233 15-36 (216)
489 2b6h_A ADP-ribosylation factor 90.4 0.12 4E-06 45.3 2.3 23 210-232 29-51 (192)
490 1z06_A RAS-related protein RAB 90.3 0.14 4.7E-06 44.5 2.8 24 210-233 20-43 (189)
491 2qnr_A Septin-2, protein NEDD5 90.3 0.12 4E-06 49.2 2.4 21 212-232 20-40 (301)
492 3tkl_A RAS-related protein RAB 90.3 0.14 4.8E-06 44.7 2.8 24 210-233 16-39 (196)
493 4b3f_X DNA-binding protein smu 90.3 0.22 7.6E-06 52.8 4.8 36 195-234 194-229 (646)
494 2p5s_A RAS and EF-hand domain 90.3 0.14 4.8E-06 45.0 2.8 24 210-233 28-51 (199)
495 1ega_A Protein (GTP-binding pr 90.2 0.15 5.2E-06 48.3 3.2 24 210-233 8-31 (301)
496 1zj6_A ADP-ribosylation factor 90.2 0.14 4.7E-06 44.5 2.7 25 209-233 15-39 (187)
497 3la6_A Tyrosine-protein kinase 90.2 0.35 1.2E-05 45.4 5.7 37 209-245 91-128 (286)
498 2h17_A ADP-ribosylation factor 90.2 0.13 4.4E-06 44.4 2.5 24 210-233 21-44 (181)
499 1tf7_A KAIC; homohexamer, hexa 90.2 0.18 6.1E-06 52.0 3.9 37 209-245 38-75 (525)
500 2gf0_A GTP-binding protein DI- 90.2 0.14 4.7E-06 44.8 2.7 23 210-232 8-30 (199)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=4.8e-47 Score=333.90 Aligned_cols=175 Identities=42% Similarity=0.747 Sum_probs=161.0
Q ss_pred CCCCCCCCcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchh
Q 009845 3 STSSSSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKW 82 (524)
Q Consensus 3 ~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~ 82 (524)
+|++++.++|||||||+|+|+|++|+++|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 33445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhh-CCCeeeeeeeecCCcccccccCcchhhhhhhhhhccCChHHHHHHHHHhhhcccCCCCCCCCCch
Q 009845 83 CLNELVKILECKSM-NGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMNIRP 161 (524)
Q Consensus 83 ~~~El~~~~~~~~~-~~~~v~pv~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 161 (524)
|++||++|++|.+. ++++||||||+|+|++||+|+|.|+++|.++++++. .+++++|+.||+++++++||++.....
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~ 184 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDK 184 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSC
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCC
Confidence 99999999999864 678999999999999999999999999999998874 478999999999999999999999888
Q ss_pred hhHHHHHHHHHHHhhhhc
Q 009845 162 EAKLVDEIINDILKKLKA 179 (524)
Q Consensus 162 ~~~~i~~i~~~v~~~l~~ 179 (524)
+++++++|+.+|+.+++.
T Consensus 185 e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 185 QGAIADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999876
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.3e-47 Score=330.30 Aligned_cols=169 Identities=46% Similarity=0.762 Sum_probs=145.7
Q ss_pred CCCCcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhHHH
Q 009845 7 SSSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCLNE 86 (524)
Q Consensus 7 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~E 86 (524)
|.+++|||||||+|+|+|++|+++|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhCCCeeeeeeeecCCcccccccCcchhhhhhhhhhccCChHHHHHHHHHhhhcccCCCCCCCCCchhhHHH
Q 009845 87 LVKILECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEKQFKDVPEKVQKWRAALTEASNLSGWDSMNIRPEAKLV 166 (524)
Q Consensus 87 l~~~~~~~~~~~~~v~pv~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~~~~~i 166 (524)
|+++++|.+.+++.|+||||+|+|++||+|+|+|+++|.+++++ ...+++++|+.||+++++++|+++. .+|+++|
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 99999999889999999999999999999999999999999987 5568999999999999999999983 6799999
Q ss_pred HHHHHHHHhhhhc
Q 009845 167 DEIINDILKKLKA 179 (524)
Q Consensus 167 ~~i~~~v~~~l~~ 179 (524)
++|+++|.++|+.
T Consensus 160 ~~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 160 DKIANEISNKKTI 172 (176)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999987
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.3e-40 Score=347.05 Aligned_cols=296 Identities=16% Similarity=0.181 Sum_probs=226.6
Q ss_pred cccchhhhhHHHhhccC-CCCceEEEEeccCcchhhHHHHHHhh----hhcccccceEEEEeeccccccCcChHHHHHHH
Q 009845 190 VGLNSRIEEIKSLLCIG-LPDFRIVGIWGMGGTGKTTLAGAIFN----LISWEFEGKCFMANVREESEKGGGLVHLREQV 264 (524)
Q Consensus 190 vGR~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 264 (524)
+||+.++++|.++|... .+..++|+|+||||+||||||+++|+ +++.+|+..+|+. ++.... .+...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 49999999999999754 34579999999999999999999996 6888899888885 443321 3577888999
Q ss_pred HHhhccccc--ccCCC------CchHHHHHHHhcC-ccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHh
Q 009845 265 LSEVLDENI--KIRTP------DLPKYMRERLQQM-KIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDF 335 (524)
Q Consensus 265 ~~~l~~~~~--~~~~~------~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~ 335 (524)
+.+++.... ..... .+...+++.++++ |+||||||+|+.+++ .+.. .+||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 988765421 11111 2468888999996 999999999998876 3332 2799999999999887765
Q ss_pred CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHH-hhcC
Q 009845 336 GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQKSKLEWENALEN-LKMI 414 (524)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~-l~~~ 414 (524)
+.. ...|+|++|+.++|++||.+.++.... .+...+.+.+|+++|+|+||||+++|+.++.+. .+|...+.. +...
T Consensus 282 ~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQT-CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR 358 (549)
T ss_dssp CSC-EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH
T ss_pred CCC-CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc
Confidence 421 257999999999999999999876542 356778899999999999999999999997764 233333322 2222
Q ss_pred CCccHHHHHhhccccCChhhHhHhh-----------hhccccCCCCHHHHHHHHHhc--Cc---------------cHHH
Q 009845 415 SDPDIYDVLKISYNELKLEEKNIFL-----------DIACFFAGEDKDFVLRILEVS--NC---------------VLNV 466 (524)
Q Consensus 415 ~~~~i~~~l~~s~~~L~~~~~~~l~-----------~la~f~~~~~~~~l~~~~~~~--~~---------------~l~~ 466 (524)
....+..++..||+.||++.+.||. +||+||.+++.. ..+|.+. |+ +++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 3456777888888888878888877 999999886644 4455554 22 6999
Q ss_pred HhhCCCceecC---CCeEEccHHHHHHHHHHHhhhC
Q 009845 467 LVHKSLITLSY---SNKLQMHDLLQEMGREIVRQEF 499 (524)
Q Consensus 467 L~~~sLi~~~~---~~~~~mH~lvr~~a~~~~~~~~ 499 (524)
|+++|||+... ..+|.|||+||++|++++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999998753 3469999999999998776553
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.8e-37 Score=353.23 Aligned_cols=303 Identities=21% Similarity=0.302 Sum_probs=237.8
Q ss_pred cCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh---hcccccceEEEEeeccccccCcCh
Q 009845 181 SFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL---ISWEFEGKCFMANVREESEKGGGL 257 (524)
Q Consensus 181 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 257 (524)
.+|+.+..||||+.++++|.++|....++.++|+|+||||+||||||++++++ ....|+..+||..+..... ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHH
Confidence 56777888999999999999999766667899999999999999999999987 3556887776665654322 233
Q ss_pred HHHHHHHHHhhcccccccCC---C--CchHHHHHHHhcC--ccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 258 VHLREQVLSEVLDENIKIRT---P--DLPKYMRERLQQM--KIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~---~--~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
...+..++..+......... . .+...++..+.++ |+||||||+|+..+++.+ .+|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 44455566655443321111 1 4455666666666 999999999998776553 57899999999998
Q ss_pred hHHHh-CCCCcceEEeCC-CCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHH
Q 009845 331 VLDDF-GVLNTNIYEVNG-LEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQKSKLEWENAL 408 (524)
Q Consensus 331 ~~~~~-~~~~~~~~~l~~-L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l 408 (524)
++... +.. ..+++++ |+.+++++||...++... +...+.+.+|+++|+|+||||+++|++|+.++ ..|..++
T Consensus 269 ~~~~~~~~~--~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 269 VTDSVMGPK--HVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp TTTTCCSCB--CCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred HHHhhcCCc--eEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 76432 222 6789996 999999999998884332 33346789999999999999999999998766 4788888
Q ss_pred HHhhcCCC-----------ccHHHHHhhccccCChhhHhHhhhhccccCC--CCHHHHHHHHHhcCc----cHHHHhhCC
Q 009845 409 ENLKMISD-----------PDIYDVLKISYNELKLEEKNIFLDIACFFAG--EDKDFVLRILEVSNC----VLNVLVHKS 471 (524)
Q Consensus 409 ~~l~~~~~-----------~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~----~l~~L~~~s 471 (524)
+.+..... ..+..+|..||+.|++++|.||.++|+||.+ ++.+.+..+|..++. +++.|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 88754331 3488999999999999999999999999986 578889999975544 899999999
Q ss_pred CceecCCCe---EEccHHHHHHHHHHHhhh
Q 009845 472 LITLSYSNK---LQMHDLLQEMGREIVRQE 498 (524)
Q Consensus 472 Li~~~~~~~---~~mH~lvr~~a~~~~~~~ 498 (524)
||+...++. |+||++||+++++++.++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999876664 999999999999986654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=326.09 Aligned_cols=326 Identities=21% Similarity=0.283 Sum_probs=239.3
Q ss_pred cCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh---cccccceEEEEeeccccccCcCh
Q 009845 181 SFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI---SWEFEGKCFMANVREESEKGGGL 257 (524)
Q Consensus 181 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 257 (524)
+.|+.+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ...|+..++|..+..... ..+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~--~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK--SGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH--HHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch--HHH
Confidence 567778899999999999999997655568999999999999999999999864 667865555544443211 112
Q ss_pred HHHHHHHHHhhccccc--cc-CCC--CchHHHHHHHhc--CccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 258 VHLREQVLSEVLDENI--KI-RTP--DLPKYMRERLQQ--MKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~--~~-~~~--~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
...+..++..++.... .. ... .....+...+.+ +++||||||+|+...++.+ +++++||||||+..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 2222333334432111 11 111 345566666766 7899999999998766543 57899999999998
Q ss_pred hHHHhCCCCcceEEe---CCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHH
Q 009845 331 VLDDFGVLNTNIYEV---NGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQKSKLEWENA 407 (524)
Q Consensus 331 ~~~~~~~~~~~~~~l---~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~ 407 (524)
+...... ..+++ ++|+.+|+.+||...++.. .....+.+.+|+++|+|+||||+++|+.++..+ ..|...
T Consensus 269 ~~~~~~~---~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 269 VTDSVMG---PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGTTCCS---CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHhcCC---CceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 7654332 44555 5899999999999988542 222235788999999999999999999998764 368888
Q ss_pred HHHhhcCC-----------CccHHHHHhhccccCChhhHhHhhhhccccCC--CCHHHHHHHHHhcCc----cHHHHhhC
Q 009845 408 LENLKMIS-----------DPDIYDVLKISYNELKLEEKNIFLDIACFFAG--EDKDFVLRILEVSNC----VLNVLVHK 470 (524)
Q Consensus 408 l~~l~~~~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~----~l~~L~~~ 470 (524)
+..+.... ...+..++..||+.|+++.+.||.++|+||.+ ++.+.+..+|..... .++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 88776432 23688999999999999999999999999875 677888888875432 89999999
Q ss_pred CCceecCC---CeEEccHHHHHHHHHHHhhh-------------------CCCCCCCcccccChhhHHHHHhhC
Q 009845 471 SLITLSYS---NKLQMHDLLQEMGREIVRQE-------------------FVKEPGKRSRLWYHEDVYHVLKKN 522 (524)
Q Consensus 471 sLi~~~~~---~~~~mH~lvr~~a~~~~~~~-------------------~~~~~~~~~rl~~~~~~~~~l~~~ 522 (524)
|||....+ ..|+||+++|+++++....+ -...+.++.++|+.+.++|++.-+
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK 495 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence 99986543 26999999999998872211 012234566778788888877644
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.8e-35 Score=312.84 Aligned_cols=298 Identities=16% Similarity=0.149 Sum_probs=218.9
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhh--hhcccccceEEEEeeccccccCcChHHHHHHH
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFN--LISWEFEGKCFMANVREESEKGGGLVHLREQV 264 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 264 (524)
...|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+..++|.+++.. .....+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHH
Confidence 44599999999999999743 3478999999999999999999996 467889986655555443 3345555555
Q ss_pred HHhhccccc----ccCC--------CCchHHHHHHH---hcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 265 LSEVLDENI----KIRT--------PDLPKYMRERL---QQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 265 ~~~l~~~~~----~~~~--------~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
+..++.... .... ..+...+++.+ .++|+||||||+|+.++++.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 554322110 0000 02344556655 5799999999999998888762 689999999999
Q ss_pred hhHHHhCCCCcceEEeC------CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCC--CH
Q 009845 330 QVLDDFGVLNTNIYEVN------GLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQK--SK 401 (524)
Q Consensus 330 ~~~~~~~~~~~~~~~l~------~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~--~~ 401 (524)
.++..+... ..+.|+ +|+.+||++||++.... . . .++..+ .|+|+||||+++|+.|+.+ +.
T Consensus 276 ~Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYLDC-R--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHHCC-C--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCC--eEEEecCccccCCcCHHHHHHHHHHHcCC-C--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCH
Confidence 887533221 345666 89999999999998532 2 1 123333 3999999999999999876 67
Q ss_pred HHHHHHHHHhhcCCCccHHHHHhhccccCChhh-HhHhhhhccccCC--CCHHHHHHHHHhcCc-----cHHHHhhCCCc
Q 009845 402 LEWENALENLKMISDPDIYDVLKISYNELKLEE-KNIFLDIACFFAG--EDKDFVLRILEVSNC-----VLNVLVHKSLI 473 (524)
Q Consensus 402 ~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-~~~l~~la~f~~~--~~~~~l~~~~~~~~~-----~l~~L~~~sLi 473 (524)
..|... ....+..+|..||+.|++++ |.||+++|+||.+ ++.+.+..+|...+. +++.|+++|||
T Consensus 345 eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 345 DNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp HHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSS
T ss_pred HHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCE
Confidence 778653 35679999999999999999 9999999999986 567888899987642 89999999999
Q ss_pred eecC-CCeEEccHHHHHHHHHHHhhhCCCCCCCcccccChhhHHHHH
Q 009845 474 TLSY-SNKLQMHDLLQEMGREIVRQEFVKEPGKRSRLWYHEDVYHVL 519 (524)
Q Consensus 474 ~~~~-~~~~~mH~lvr~~a~~~~~~~~~~~~~~~~rl~~~~~~~~~l 519 (524)
+..+ .++|+||+++++++ ....+.+..+.|+.++..+.+++
T Consensus 418 q~d~~~~rYrMHDLllELr-----~~~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 418 EKQPKESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp SBCSSSSEEBCCCHHHHHH-----HHHSCCTTHHHHHHHHHHHHHHC
T ss_pred EEeCCCCEEEehHHHHHHh-----cCCCcHHHHHHHHHHHHHhhCcC
Confidence 9763 56799999998843 11113455566666665555443
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=5.2e-31 Score=228.69 Aligned_cols=121 Identities=23% Similarity=0.403 Sum_probs=113.4
Q ss_pred CCCcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhHHHH
Q 009845 8 SSCKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCLNEL 87 (524)
Q Consensus 8 ~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El 87 (524)
+.++|||||||+++| +..|+.+|+.+|+++|++||+|++++.+|+.|.+.|.++|++|+++|+|+|++|++|.||+.||
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 458899999999999 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhCCCeeeeeeeecCCcccccccCcchhhhhhhhh
Q 009845 88 VKILECKSMNGQMVVPVFYHVDPSDVRKQNGTFGDAFVKHEK 129 (524)
Q Consensus 88 ~~~~~~~~~~~~~v~pv~~~~~~~~~r~~~~~~~~~~~~~~~ 129 (524)
..++++...++++||||||+++|++|++|+|.|+++|.....
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 999988777788999999999999999999999988876544
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=3.9e-27 Score=200.86 Aligned_cols=137 Identities=19% Similarity=0.272 Sum_probs=95.5
Q ss_pred CCCCCCCcccEEEecccCcccccHHHHHHHHHhh--CCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccch
Q 009845 4 TSSSSSCKYDVFLSFRGEDTRDNFTSRLHAALCR--KKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSK 81 (524)
Q Consensus 4 ~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~ 81 (524)
+|+.....|||||||+++| ..|+.+|+.+|++ .|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|++|.
T Consensus 3 ~~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 3455677999999999999 5579999999998 59999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhHhhCCCeeeeeeeecCCccc----ccccCcchhhhhhhhhhccCChHHHHHHHHHh
Q 009845 82 WCLNELVKILECKSMNGQMVVPVFYHVDPSDV----RKQNGTFGDAFVKHEKQFKDVPEKVQKWRAAL 145 (524)
Q Consensus 82 ~~~~El~~~~~~~~~~~~~v~pv~~~~~~~~~----r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al 145 (524)
||..|+..++.+...+..+|||||++++++++ +.... -.+......+....+.|.+|+++|
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~---id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYY---VDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCC---EETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeee---eeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999998774444578899999886554 33322 111233455555566788887765
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.88 E-value=2.3e-23 Score=180.56 Aligned_cols=103 Identities=18% Similarity=0.359 Sum_probs=93.1
Q ss_pred CCCCCcccEEEecccCcccccHHHHHHHHHhhC--CCcEEecCCcCCCCCcchHHHHHHhh-hcceEEEEeccCcccchh
Q 009845 6 SSSSCKYDVFLSFRGEDTRDNFTSRLHAALCRK--KINTFIDDEELRRGDCISPAIFDAIQ-GSKISVIILSKDYASSKW 82 (524)
Q Consensus 6 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~~~~s~~ 82 (524)
.+.++.|||||||+++| ..||.+|+.+|+++ |+++|+|++++.||+++.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 44578999999999999 78999999999985 69999999999999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhH-hhCCCeeeeeeeecCC
Q 009845 83 CLNELVKILECK-SMNGQMVVPVFYHVDP 110 (524)
Q Consensus 83 ~~~El~~~~~~~-~~~~~~v~pv~~~~~~ 110 (524)
|..|+..++.+. ..++++||||||+..+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999865 3445689999998654
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=4.6e-23 Score=181.46 Aligned_cols=103 Identities=19% Similarity=0.349 Sum_probs=88.7
Q ss_pred CCCCCcccEEEecccCcccccHHHH-HHHHHhh--CCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchh
Q 009845 6 SSSSCKYDVFLSFRGEDTRDNFTSR-LHAALCR--KKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKW 82 (524)
Q Consensus 6 ~~~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~ 82 (524)
...++.|||||||+++| .+||.+ |+..|++ .|+++|+|++++.||+++.++|.++|++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45678899999999999 589986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhH-hhCCCeeeeeeeecCC
Q 009845 83 CLNELVKILECK-SMNGQMVVPVFYHVDP 110 (524)
Q Consensus 83 ~~~El~~~~~~~-~~~~~~v~pv~~~~~~ 110 (524)
|..|+..++.+. ..++++||||||+.-|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998644 4456789999988543
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=2.9e-23 Score=178.27 Aligned_cols=99 Identities=20% Similarity=0.332 Sum_probs=90.1
Q ss_pred CCCcccEEEecccCcccccHHHH-HHHHHhhC--CCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhH
Q 009845 8 SSCKYDVFLSFRGEDTRDNFTSR-LHAALCRK--KINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCL 84 (524)
Q Consensus 8 ~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~ 84 (524)
.++.|||||||+++| ..|+.+ |+..|++. |+++|+|++++.+|+++.++|.++|++|+++|+|+|++|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 467899999999999 479997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-hhCCCeeeeeeeec
Q 009845 85 NELVKILECK-SMNGQMVVPVFYHV 108 (524)
Q Consensus 85 ~El~~~~~~~-~~~~~~v~pv~~~~ 108 (524)
.|+..++.+. +.++++|||||++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999887533 55677899999973
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.85 E-value=5.2e-22 Score=171.88 Aligned_cols=102 Identities=20% Similarity=0.284 Sum_probs=90.1
Q ss_pred CcccEEEecccCcc---------cccHHHHHHH-HHh-hCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcc
Q 009845 10 CKYDVFLSFRGEDT---------RDNFTSRLHA-ALC-RKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYA 78 (524)
Q Consensus 10 ~~~dvFis~~~~D~---------~~~~~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 78 (524)
..|||||||+++|+ +.+|+.++.. .|+ ..|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 3568888665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhH-hhCCCeeeeeeeecCCc
Q 009845 79 -SSKWCLNELVKILECK-SMNGQMVVPVFYHVDPS 111 (524)
Q Consensus 79 -~s~~~~~El~~~~~~~-~~~~~~v~pv~~~~~~~ 111 (524)
.|.||..|+..++.+. ..++.+||||++...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999876 56678999998875543
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.81 E-value=1.3e-18 Score=172.87 Aligned_cols=288 Identities=16% Similarity=0.132 Sum_probs=175.4
Q ss_pred cCCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccc--ccCcChH
Q 009845 181 SFSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREES--EKGGGLV 258 (524)
Q Consensus 181 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~ 258 (524)
.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||+|++++++... .+|+. +.... ....+..
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHH
Confidence 34556678999999999999998742 6999999999999999999998752 34443 33221 0001334
Q ss_pred HHHHHHHHhhcc----------------cccccC-CC--CchHHHHHHHhc-CccEEEecCCCCHH--------H-HHHH
Q 009845 259 HLREQVLSEVLD----------------ENIKIR-TP--DLPKYMRERLQQ-MKIFIVLDDVNKVR--------Q-LEYL 309 (524)
Q Consensus 259 ~l~~~l~~~l~~----------------~~~~~~-~~--~~~~~l~~~l~~-~~~LlVlDdv~~~~--------~-~~~l 309 (524)
.+...+...+.. ...... .. ++...+.+.... ++++|||||++... . +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 445544443321 000000 11 233344444432 49999999996532 2 2222
Q ss_pred hcCCCCCCCCcEEEEEeCChhhHHHh----C----C--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHH
Q 009845 310 TGGLDQFGPGSRLIITTRDKQVLDDF----G----V--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVV 379 (524)
Q Consensus 310 ~~~~~~~~~~~~iliTsR~~~~~~~~----~----~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~ 379 (524)
..... ..++.++|+|++........ . . .....+++.||+.+|+.+++........... ..+.+..++
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAV 232 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 21111 12478899998876542221 0 1 1124799999999999999987653222111 235678999
Q ss_pred HHhCCChHHHHHHHHHhcC-CCHHHHH-HHHHHhhcCCCccHHHHHhhccccC---ChhhHhHhhhhccccCCCCHHHHH
Q 009845 380 KYANGNPLALRVLGSFLHQ-KSKLEWE-NALENLKMISDPDIYDVLKISYNEL---KLEEKNIFLDIACFFAGEDKDFVL 454 (524)
Q Consensus 380 ~~~~G~PLal~~~~~~l~~-~~~~~~~-~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~ 454 (524)
..|+|+|+++..++..+.. .+...+. ...+ .+...+...+..+ ++..+.++..+|+ ...+...+.
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE--------VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHH--------HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 9999999999998876532 2322221 1111 1122222223333 7888999999998 345666666
Q ss_pred HHHHhc--Cc-------cHHHHhhCCCceecCCCeEE-ccHHHHHHHH
Q 009845 455 RILEVS--NC-------VLNVLVHKSLITLSYSNKLQ-MHDLLQEMGR 492 (524)
Q Consensus 455 ~~~~~~--~~-------~l~~L~~~sLi~~~~~~~~~-mH~lvr~~a~ 492 (524)
..+... +. +++.|.+.+||... ++.|. .|++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 655211 11 79999999999876 46665 4889988754
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=7.7e-18 Score=167.73 Aligned_cols=288 Identities=19% Similarity=0.135 Sum_probs=168.4
Q ss_pred CCCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccc-ccCcChHHH
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREES-EKGGGLVHL 260 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l 260 (524)
++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++++++..... .+|+. +.... ....+....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDF 77 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHH
Confidence 44566789999999999999 763 599999999999999999999876432 34443 33210 000112233
Q ss_pred HHHHHHhhcc------------------cccc--cC------CCCchHHHHHHHhc---CccEEEecCCCCHH-----HH
Q 009845 261 REQVLSEVLD------------------ENIK--IR------TPDLPKYMRERLQQ---MKIFIVLDDVNKVR-----QL 306 (524)
Q Consensus 261 ~~~l~~~l~~------------------~~~~--~~------~~~~~~~l~~~l~~---~~~LlVlDdv~~~~-----~~ 306 (524)
...+...+.. .... .. .......+.+.+.. ++++|||||++... .+
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 3332222110 0000 00 11123333333432 48999999995432 11
Q ss_pred HHHhcCCCCCCCCcEEEEEeCChhhHHHh----C----CC--CcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHH
Q 009845 307 EYLTGGLDQFGPGSRLIITTRDKQVLDDF----G----VL--NTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLE 376 (524)
Q Consensus 307 ~~l~~~~~~~~~~~~iliTsR~~~~~~~~----~----~~--~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~ 376 (524)
..++..+....++.++|+|++........ . .. ....+.+.+|+.+|+.+++...+.......+. ..
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~ 233 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YE 233 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HH
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HH
Confidence 11111111112467899999986543221 0 11 12579999999999999998865321111222 27
Q ss_pred HHHHHhCCChHHHHHHHHHhcC-CCHHHHHHH-HHHhhcCCCccHHHHHhhcc---ccCChhhHhHhhhhccccCCCCHH
Q 009845 377 HVVKYANGNPLALRVLGSFLHQ-KSKLEWENA-LENLKMISDPDIYDVLKISY---NELKLEEKNIFLDIACFFAGEDKD 451 (524)
Q Consensus 377 ~i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~-l~~l~~~~~~~i~~~l~~s~---~~L~~~~~~~l~~la~f~~~~~~~ 451 (524)
.+++.|+|+|+++..++..+.. .+...|... .+... ..+...+...+ ..|++..+.++..+|+ . . +..
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~ 306 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWS 306 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHH
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHH
Confidence 8999999999999999877643 233333211 11110 01111121111 1688899999999998 3 3 666
Q ss_pred HHHHHHH-hcC----c-----cHHHHhhCCCceecCCCeEE-ccHHHHHHH
Q 009845 452 FVLRILE-VSN----C-----VLNVLVHKSLITLSYSNKLQ-MHDLLQEMG 491 (524)
Q Consensus 452 ~l~~~~~-~~~----~-----~l~~L~~~sLi~~~~~~~~~-mH~lvr~~a 491 (524)
.+...+. ..+ . +++.|.+.+||...+ +.|. .|++++++.
T Consensus 307 ~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 307 DVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 6664331 111 1 799999999998774 5565 689999874
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.75 E-value=7.4e-17 Score=164.03 Aligned_cols=293 Identities=14% Similarity=0.017 Sum_probs=171.7
Q ss_pred CCCCCccccchhhhhHHHhh-ccC--C--CCceEEEE--eccCcchhhHHHHHHhhhhcccc-----cceEEEEeecccc
Q 009845 184 SDFNGFVGLNSRIEEIKSLL-CIG--L--PDFRIVGI--WGMGGTGKTTLAGAIFNLISWEF-----EGKCFMANVREES 251 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L-~~~--~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~ 251 (524)
..+..|+||+.++++|..++ ... . ...+.+.| +|++|+|||+|++.+++.....+ ...+.+.++...
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA- 97 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-
Confidence 34578999999999999988 421 1 23567778 99999999999999998765532 222223222221
Q ss_pred ccCcChHHHHHHHHHhhcccccccCCC--CchHHHHHHHh--cCccEEEecCCCCH--------HHHHHHhcCCCCC---
Q 009845 252 EKGGGLVHLREQVLSEVLDENIKIRTP--DLPKYMRERLQ--QMKIFIVLDDVNKV--------RQLEYLTGGLDQF--- 316 (524)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~--- 316 (524)
.....++..++..++......... .....+...+. +++++|||||++.. +.+..+...+...
T Consensus 98 ---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 98 ---PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp ---CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred ---CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 456678888888775542211111 33445555554 67999999999653 3333333222111
Q ss_pred C--CCcEEEEEeCChhhHHHh--------CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhC---
Q 009845 317 G--PGSRLIITTRDKQVLDDF--------GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYAN--- 383 (524)
Q Consensus 317 ~--~~~~iliTsR~~~~~~~~--------~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~--- 383 (524)
+ ....+|+||+...+.... .... ..+.+++|+.+++.++|...+...........+.+..+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 1 344577788765432111 1111 3499999999999999976542111111122466788999999
Q ss_pred ---CChHHHHHHHHHhc------CC---CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcccc----CC
Q 009845 384 ---GNPLALRVLGSFLH------QK---SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFF----AG 447 (524)
Q Consensus 384 ---G~PLal~~~~~~l~------~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~----~~ 447 (524)
|+|..+..++.... +. +...+......... ...+..++..||+..+.++..++++. ..
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976665544321 11 23333333322110 34456678899999999999998753 23
Q ss_pred CCHHHHHH----HH-HhcC---c-------cHHHHhhCCCceecC-----CCeEEccHHH
Q 009845 448 EDKDFVLR----IL-EVSN---C-------VLNVLVHKSLITLSY-----SNKLQMHDLL 487 (524)
Q Consensus 448 ~~~~~l~~----~~-~~~~---~-------~l~~L~~~sLi~~~~-----~~~~~mH~lv 487 (524)
++...+.. +. ...+ . +++.|.+.|||.... .|+|.+|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 44443322 22 2211 1 789999999997642 3345555443
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=8.7e-15 Score=147.22 Aligned_cols=270 Identities=13% Similarity=0.052 Sum_probs=168.1
Q ss_pred CCccccchhhhhHHHhhcc--CCCCceEEEEeccCcchhhHHHHHHhhhhcccc-------cceEEEEeeccccccCc-C
Q 009845 187 NGFVGLNSRIEEIKSLLCI--GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF-------EGKCFMANVREESEKGG-G 256 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------~~~~~~~~~~~~~~~~~-~ 256 (524)
..|+||+.+++++..++.. .....+.+.|+|++|+|||+||+.+++.+.... ...+.+.++... . .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV----GGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH----CSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC----CCC
Confidence 7899999999999988753 233456899999999999999999998764432 222333323222 2 4
Q ss_pred hHHHHHHHHHhhccccccc-CC--CCchHHHHHHHhcCccEEEecCCCCHH------H-HHHHhcCCCCCCCCcEEEEEe
Q 009845 257 LVHLREQVLSEVLDENIKI-RT--PDLPKYMRERLQQMKIFIVLDDVNKVR------Q-LEYLTGGLDQFGPGSRLIITT 326 (524)
Q Consensus 257 ~~~l~~~l~~~l~~~~~~~-~~--~~~~~~l~~~l~~~~~LlVlDdv~~~~------~-~~~l~~~~~~~~~~~~iliTs 326 (524)
...+...++..+....... .. ......+...+..++.+|||||++... . +..+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 5667777777653221111 11 134556666676666699999996543 2 33444432 577888888
Q ss_pred CChhhH----HHh--CCCCcceEEeCCCCHHHHHHHHHhhhcC---CCCCCchHHHHHHHHHHHhC---CChHHH-HHHH
Q 009845 327 RDKQVL----DDF--GVLNTNIYEVNGLEYHEALELFCNFAFK---HDYCLDDLLVLLEHVVKYAN---GNPLAL-RVLG 393 (524)
Q Consensus 327 R~~~~~----~~~--~~~~~~~~~l~~L~~~ea~~ll~~~~~~---~~~~~~~~~~~~~~i~~~~~---G~PLal-~~~~ 393 (524)
+..... ... ... ..+.+++++.++..+++...+.. ..... .+....+++.++ |+|..+ ..+-
T Consensus 172 ~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp SSTTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 875321 111 112 48999999999999999987531 12122 245677888888 998743 3332
Q ss_pred HHh--c----CCCHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhccccC-CCCHHHHHHHHHhcC---c-
Q 009845 394 SFL--H----QKSKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFFA-GEDKDFVLRILEVSN---C- 462 (524)
Q Consensus 394 ~~l--~----~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~-~~~~~~l~~~~~~~~---~- 462 (524)
... . .-+...+..++.... ...+..++..|++.++.++..++.... +........+....+ .
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 222 1 124566666665542 244667778899999998888876111 111123333333221 1
Q ss_pred ------cHHHHhhCCCceec
Q 009845 463 ------VLNVLVHKSLITLS 476 (524)
Q Consensus 463 ------~l~~L~~~sLi~~~ 476 (524)
++..|.+.|+|+..
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 78999999999864
No 17
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=2.9e-14 Score=143.66 Aligned_cols=302 Identities=12% Similarity=0.070 Sum_probs=178.8
Q ss_pred CCCCccccchhhhhHHHhhccC----CCCceEEEEeccCcchhhHHHHHHhhhhccccc-ceEEEEeeccccccCcChHH
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIG----LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~ 259 (524)
.+..++||+.++++|..++... .+..+.+.|+|++|+|||||++.+++....... ..+++. +... .....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~~~----~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-GFIY----RNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TTTC----CSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-CccC----CCHHH
Confidence 3478999999999999988642 222348999999999999999999988755421 223332 2211 44567
Q ss_pred HHHHHHHhhcccccccCCC--CchHHHHHHHh--cCccEEEecCCCC--HHHHHHHhcCCCCCC----CCcEEEEEeCCh
Q 009845 260 LREQVLSEVLDENIKIRTP--DLPKYMRERLQ--QMKIFIVLDDVNK--VRQLEYLTGGLDQFG----PGSRLIITTRDK 329 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~--~~~~~l~~~l~--~~~~LlVlDdv~~--~~~~~~l~~~~~~~~----~~~~iliTsR~~ 329 (524)
+...++..++......... .....+...+. +++.+||||+++. ...+..+...+.... .+..+|++|+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 7777777765432211111 33344444443 5688999999965 344555544443211 366788888766
Q ss_pred hhHHHhC-----CCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHh---------CCChHHHHHHHHH
Q 009845 330 QVLDDFG-----VLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYA---------NGNPLALRVLGSF 395 (524)
Q Consensus 330 ~~~~~~~-----~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~~~~ 395 (524)
....... ......+.+++++.++..+++...+...........+....+++.+ +|+|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4322110 0001369999999999999998876321101122346778899999 7998666544433
Q ss_pred hc------C---CCHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcccc---C--CCCHHHHHHHHHh--
Q 009845 396 LH------Q---KSKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFF---A--GEDKDFVLRILEV-- 459 (524)
Q Consensus 396 l~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~---~--~~~~~~l~~~~~~-- 459 (524)
.. + -+............ .. .+...+..|+...+.++..++.+. . .++...+...+..
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~---~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL---FG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS---CC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh---hh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 21 1 12333333333321 11 223345678888898888888654 2 3444444433322
Q ss_pred -----cCc-------cHHHHhhCCCceecCC-------CeEE-------ccHHHHHHHHHHHhhh
Q 009845 460 -----SNC-------VLNVLVHKSLITLSYS-------NKLQ-------MHDLLQEMGREIVRQE 498 (524)
Q Consensus 460 -----~~~-------~l~~L~~~sLi~~~~~-------~~~~-------mH~lvr~~a~~~~~~~ 498 (524)
... ++..|...|+|..... |++. .|++++.+...++..|
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 111 8999999999987432 2222 3566666666655544
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.7e-14 Score=144.99 Aligned_cols=282 Identities=16% Similarity=0.081 Sum_probs=165.4
Q ss_pred CCCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEEeeccccccCcChHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 259 (524)
..+..|+||+.+++.|..++... ....+.+.|+|++|+|||||++.+++.....+ ...+.+.++... .....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~----~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI----DTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH----CSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC----CCHHH
Confidence 34578999999999999988742 34467899999999999999999998876543 222222222221 34455
Q ss_pred HHHHHHHhhcccccccCCC--CchHHHHHHHh--cCccEEEecCCCCH------HHHHHHhcCCCC-CCCCcEEEEEeCC
Q 009845 260 LREQVLSEVLDENIKIRTP--DLPKYMRERLQ--QMKIFIVLDDVNKV------RQLEYLTGGLDQ-FGPGSRLIITTRD 328 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~--~~~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~~~~-~~~~~~iliTsR~ 328 (524)
+...++..++......... .....+.+.+. +++.+||||+++.. ..+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 6666666554332211111 23444445554 34899999999543 233344322211 1335567888876
Q ss_pred hhhHHHh-----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhC---CChHHHHHHHHHhc---
Q 009845 329 KQVLDDF-----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYAN---GNPLALRVLGSFLH--- 397 (524)
Q Consensus 329 ~~~~~~~-----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~~l~--- 397 (524)
....... .......+.+++++.++..+++...+...........+....+++.++ |+|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5432111 011114799999999999999998653111011222355677777887 99985543333221
Q ss_pred ---C---CCHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhccccC----CCCHHHH----HHHHHh---c
Q 009845 398 ---Q---KSKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFFA----GEDKDFV----LRILEV---S 460 (524)
Q Consensus 398 ---~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~~~l----~~~~~~---~ 460 (524)
+ -+...+..++.... ...+...+.+|++..+.++..++.+.. .++...+ ..+... .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 13444555444431 245666778899999998888885421 2333222 222221 2
Q ss_pred Cc-------cHHHHhhCCCceec
Q 009845 461 NC-------VLNVLVHKSLITLS 476 (524)
Q Consensus 461 ~~-------~l~~L~~~sLi~~~ 476 (524)
.. +++.|.+.|+|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 21 78899999999764
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=7.6e-14 Score=140.35 Aligned_cols=278 Identities=13% Similarity=0.059 Sum_probs=165.4
Q ss_pred CCCCccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhcccc-----cceEEEEeeccccccCcCh
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF-----EGKCFMANVREESEKGGGL 257 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~ 257 (524)
.+..|+||+.+++++..++... ....+.+.|+|++|+|||+||+.+++...... ...+...++... .+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR----ETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS----CSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC----CCH
Confidence 4478999999999999988542 34467899999999999999999998765432 222222222221 456
Q ss_pred HHHHHHHHHhhcccccccCCC--CchHHHHHHHh--cCccEEEecCCCCHHH-------HHHHhcCCCCC--CCCcEEEE
Q 009845 258 VHLREQVLSEVLDENIKIRTP--DLPKYMRERLQ--QMKIFIVLDDVNKVRQ-------LEYLTGGLDQF--GPGSRLII 324 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~--~~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~~~~ili 324 (524)
..+...++..++......... .....+...+. +++.+||||+++.... +..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 677777777775533222211 33445555553 4578999999975432 22233222111 34556777
Q ss_pred EeCChhhH----HH-hCCCCcceEEeCCCCHHHHHHHHHhhhcC---CCCCCchHHHHHHHHHHHhC---CChHHHHHHH
Q 009845 325 TTRDKQVL----DD-FGVLNTNIYEVNGLEYHEALELFCNFAFK---HDYCLDDLLVLLEHVVKYAN---GNPLALRVLG 393 (524)
Q Consensus 325 TsR~~~~~----~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~---~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~ 393 (524)
||+..... .. ........+.+++++.++..+++...+.. ..... .+....+++.++ |+|..+..+.
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 77765221 11 11111147999999999999999987532 11112 245677888888 9994433222
Q ss_pred HHhc------C---CCHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhccccCC---CCHHHHHH----HH
Q 009845 394 SFLH------Q---KSKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFFAG---EDKDFVLR----IL 457 (524)
Q Consensus 394 ~~l~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~---~~~~~l~~----~~ 457 (524)
.... + -+...+..++.... ...+..++..|++.++.++..++.+..+ +....+.+ +.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 2211 1 14555555555432 2345667889999999888888754322 33332222 22
Q ss_pred Hhc---Cc-------cHHHHhhCCCceec
Q 009845 458 EVS---NC-------VLNVLVHKSLITLS 476 (524)
Q Consensus 458 ~~~---~~-------~l~~L~~~sLi~~~ 476 (524)
... .. +++.|...|+++..
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 221 11 78888889988763
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=169.69 Aligned_cols=103 Identities=21% Similarity=0.324 Sum_probs=92.2
Q ss_pred CCCCcccEEEecccCcccccHH-HHHHHHHhh-----CCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccc
Q 009845 7 SSSCKYDVFLSFRGEDTRDNFT-SRLHAALCR-----KKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASS 80 (524)
Q Consensus 7 ~~~~~~dvFis~~~~D~~~~~~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s 80 (524)
...+.|||||||+++| ..|| .+|...||. .|+++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 3567899999999999 5677 679999985 5899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhH-hhCCCeeeeeeeecCCc
Q 009845 81 KWCLNELVKILECK-SMNGQMVVPVFYHVDPS 111 (524)
Q Consensus 81 ~~~~~El~~~~~~~-~~~~~~v~pv~~~~~~~ 111 (524)
.||..|+..++.+. ++++++|||||++..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999887665 56677899999986554
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=3.9e-13 Score=125.77 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=118.5
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....|+||+.+++.|..++..+. ..+.+.|+|++|+|||+||+.+++.....+.....-+ ..... ...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC---------GVCDN-CRE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC---------SCSHH-HHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---------cccHH-HHH
Confidence 344679999999999999987543 2358999999999999999999987654321100000 00000 000
Q ss_pred HHHhhccccccc--CCCCchHHHHHHH--------hcCccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 264 VLSEVLDENIKI--RTPDLPKYMRERL--------QQMKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 264 l~~~l~~~~~~~--~~~~~~~~l~~~l--------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
+........... ........+...+ .+++.+|||||++. ...+..+...+.....+..+|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 000000000000 0000111111111 24678999999954 44555555444333457788888876532
Q ss_pred HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 332 LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
....-......+++++++.++..+++...+...... ...+....+++.|+|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211001112689999999999999999877543322 223567889999999999998776544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=1.8e-12 Score=119.41 Aligned_cols=188 Identities=15% Similarity=0.112 Sum_probs=115.1
Q ss_pred CCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEEeeccccccCcChHHHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
|.....++||+..++.+..++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+.... .+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE----RGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT----TCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc----cChHHHH
Confidence 3445679999999999999997543 2349999999999999999999876433 2222222211111 2222222
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-HH-hCC
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQVL-DD-FGV 337 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~-~~~ 337 (524)
..+..+..... ...+++.+|||||++.. ...+.+...+.....+..+|+||+..... .. ...
T Consensus 87 -~~~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 87 -HKIKEFARTAP-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp -HHHHHHHTSCC-------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred -HHHHHHhcccC-------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 11111111000 01246889999999653 33444443333334567888888765321 11 112
Q ss_pred CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 009845 338 LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGS 394 (524)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 394 (524)
. ..+.+++++.++..+++...+...+.. ...+....+++.++|+|..+..+..
T Consensus 153 ~--~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 153 C--AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp S--EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C--ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 579999999999999999877432221 2235677889999999997654443
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.4e-11 Score=120.54 Aligned_cols=187 Identities=15% Similarity=0.203 Sum_probs=112.5
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEEeeccccccCcChHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.....++|++..++.|..++..+.. +.+.|+|++|+|||++|+.+++.+... +...+...+... . .+.. ..+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---~-~~~~-~i~ 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---D-RGID-VVR 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---C-CSHH-HHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc---c-cChH-HHH
Confidence 3456799999999999999875432 238999999999999999999876432 222222221111 0 1222 222
Q ss_pred HHHHhhcccccccCCCCchHHHHHHH-hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-HHhCCC
Q 009845 263 QVLSEVLDENIKIRTPDLPKYMRERL-QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQVL-DDFGVL 338 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~~~~~ 338 (524)
.++..+..... .+ .+++.++||||++.. .....+...+....+++.+|+||+..... .... .
T Consensus 91 ~~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~-s 156 (323)
T 1sxj_B 91 NQIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ-S 156 (323)
T ss_dssp THHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-T
T ss_pred HHHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH-h
Confidence 22222110000 01 345789999999653 33333333332224567788888665321 1111 1
Q ss_pred CcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHH-HHHHH
Q 009845 339 NTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLA-LRVLG 393 (524)
Q Consensus 339 ~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~~ 393 (524)
....+++.+++.++..+++...+...+.. ...+.+..+++.++|+|.. +..+.
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12689999999999999999876432211 1235678899999999954 44443
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=7.1e-11 Score=115.69 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=114.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc-cceEEEEeeccccccCcChHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF-EGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.....++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+.... ...+...+.... .+.. ...
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~-~~~ 94 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE----RGIN-VIR 94 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH----HHHH-TTH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc----CchH-HHH
Confidence 445679999999999999987543 23499999999999999999998764332 111221111110 0011 111
Q ss_pred HHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-HHhCCCC
Q 009845 263 QVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQVL-DDFGVLN 339 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~~-~~~~~~~ 339 (524)
..+..+..... ...+++.++|+||++.. .....+...+.....++++|+||...... .... ..
T Consensus 95 ~~~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~-sr 160 (327)
T 1iqp_A 95 EKVKEFARTKP-------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SR 160 (327)
T ss_dssp HHHHHHHHSCC-------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-HT
T ss_pred HHHHHHHhhCC-------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH-hh
Confidence 11111000000 00256789999999643 34444444333334567888888765321 1110 11
Q ss_pred cceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHh
Q 009845 340 TNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFL 396 (524)
Q Consensus 340 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 396 (524)
...+.+.+++.++..+++...+...+. ....+....+++.++|+|..+..+...+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 257899999999999999987644332 1234667889999999998765544433
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.14 E-value=4.7e-09 Score=102.59 Aligned_cols=255 Identities=13% Similarity=0.060 Sum_probs=146.2
Q ss_pred CCCCCCccccchhhhhHHHhhccC---CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIG---LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|.....|+|++..++.+..++... ....+.+.|+|++|+|||+||+.+++..... +...+.... .....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~----~~~~~~~~~----~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN----LRVTSGPAI----EKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC----EEEECTTTC----CSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC----EEEEecccc----CChHH
Confidence 345578999999999998887521 2234678999999999999999999876432 122211111 11111
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--HHHHHhcCCCCC------------------CCC
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--QLEYLTGGLDQF------------------GPG 319 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~~ 319 (524)
+... +.. . ..++.+|+||+++... ....+...+... .+.
T Consensus 80 l~~~----l~~----------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 LAAI----LAN----------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp HHHH----HTT----------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred HHHH----HHH----------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111 100 0 1356799999996542 233332211100 123
Q ss_pred cEEEEEeCChhhH-HHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcC
Q 009845 320 SRLIITTRDKQVL-DDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLHQ 398 (524)
Q Consensus 320 ~~iliTsR~~~~~-~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 398 (524)
..+|.||...... ..+.......+.+++++.++..+++...+...... ...+....++++++|+|..+..+...+..
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 4566666544221 11111111579999999999999998877543322 22466788999999999988777665532
Q ss_pred C---------CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhccc--cCCCCHHHHHHHHHhcCc----c
Q 009845 399 K---------SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACF--FAGEDKDFVLRILEVSNC----V 463 (524)
Q Consensus 399 ~---------~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f--~~~~~~~~l~~~~~~~~~----~ 463 (524)
. +.......+.. +......++..++..+..+... ..++....+...++.... .
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 22223332222 1223345777777777665533 234566666665543322 2
Q ss_pred HH-HHhhCCCceecCCCe
Q 009845 464 LN-VLVHKSLITLSYSNK 480 (524)
Q Consensus 464 l~-~L~~~sLi~~~~~~~ 480 (524)
++ .+++.++|.....|+
T Consensus 285 l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp THHHHHHTTSEEEETTEE
T ss_pred HhHHHHHhcchhcCCccc
Confidence 33 388899998775443
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=1.3e-09 Score=106.18 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=114.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc-cccceEEEEeeccccccCcChHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW-EFEGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.....++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+.. .+...+...+....... ..+.....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 90 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI-DVVRHKIK 90 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT-TTSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh-HHHHHHHH
Confidence 344679999999999999987543 233899999999999999999987532 22221222211111000 11111111
Q ss_pred HHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-HHHhCCCC
Q 009845 263 QVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQV-LDDFGVLN 339 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~~-~~~~~~~~ 339 (524)
.+..... ...+++.++|+|+++.. .....+...+.....+..+|+||....- ..... ..
T Consensus 91 ~~~~~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~-sr 152 (319)
T 2chq_A 91 EFARTAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ-SR 152 (319)
T ss_dssp HHHHSCC-----------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH-TT
T ss_pred HHHhcCC-----------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH-hh
Confidence 1110000 00245789999999643 3445566655554567778887766532 11111 11
Q ss_pred cceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 009845 340 TNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGS 394 (524)
Q Consensus 340 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 394 (524)
...+++.+++.++..+++...+...+.. ...+....++..++|++..+.....
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2689999999999999999877443322 2345678889999999987654433
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.05 E-value=2.4e-09 Score=106.84 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=114.5
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|++..++.|...+..+. ..+.+.|+|++|+|||++|+.+++.+....... .. . .+.......
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--~~------~--~~~~~~~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--AT------P--CGVCDNCRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC--SS------C--CSSSHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--CC------C--CcccHHHHH
Confidence 345679999999999999987542 245789999999999999999998764332100 00 0 000001111
Q ss_pred HHHhhc-----ccccccCCCCchHHHHHHH-----hcCccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 264 VLSEVL-----DENIKIRTPDLPKYMRERL-----QQMKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 264 l~~~l~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
+..... ..............+.+.+ .+++.++|+||++. ......+...+.....+..+|++|.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 111000 0000000112222333332 24578999999954 33445554443333456667777765432
Q ss_pred -HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHH
Q 009845 332 -LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGS 394 (524)
Q Consensus 332 -~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 394 (524)
..... .....+++.+++.++..+++...+...+.. ...+.+..+++.++|+|..+..+..
T Consensus 162 l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 162 LPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11111 112789999999999999998776332211 1235678899999999998866543
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.97 E-value=1.5e-08 Score=99.53 Aligned_cols=255 Identities=15% Similarity=0.110 Sum_probs=143.9
Q ss_pred CCCCCccccchhhhhHHHhhccC---CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIG---LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHL 260 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 260 (524)
.....|+|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| ...+.... .....+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~----~~~~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI----EKSGDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC----CSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc----cchhHH
Confidence 34567999999999999988642 23356789999999999999999988764332 11111111 111111
Q ss_pred HHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCC------------------CCCCc
Q 009845 261 REQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQ------------------FGPGS 320 (524)
Q Consensus 261 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~------------------~~~~~ 320 (524)
...+.. ..++.+|+||+++.. .....+...+.. ..+..
T Consensus 98 -~~~~~~---------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 -AAILTN---------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -HHHHHT---------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -HHHHHh---------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111110 235679999999643 223333221110 01134
Q ss_pred EEEEEeCChhhH-HHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhc--
Q 009845 321 RLIITTRDKQVL-DDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLH-- 397 (524)
Q Consensus 321 ~iliTsR~~~~~-~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~-- 397 (524)
.+|.+|...... ..+.......+.+++++.++..+++...+.... .....+....+++.+.|+|-.+..+...+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 566555543221 111111116799999999999999988774332 122346677888899999976655443321
Q ss_pred ----CC---CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcccc-CCCCHHHHHHHHHhcCc----cHH
Q 009845 398 ----QK---SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIACFF-AGEDKDFVLRILEVSNC----VLN 465 (524)
Q Consensus 398 ----~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~-~~~~~~~l~~~~~~~~~----~l~ 465 (524)
+. +.......+.. +..+...++..++.++..++... .......+...+..... .++
T Consensus 234 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 11 22222222222 22233445555566666655542 22456666665543322 444
Q ss_pred -HHhhCCCceecCCCeEE
Q 009845 466 -VLVHKSLITLSYSNKLQ 482 (524)
Q Consensus 466 -~L~~~sLi~~~~~~~~~ 482 (524)
.|++.++|.....|+..
T Consensus 302 ~~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 302 PYLLANGYIERTAKGRIA 319 (338)
T ss_dssp HHHHHTTSEEEETTEEEE
T ss_pred HHHHHcCceecCCCcccc
Confidence 88999999887666544
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=9.1e-09 Score=98.89 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=97.7
Q ss_pred CccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhccccc-----c--eEEEEeeccccccCcChH
Q 009845 188 GFVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-----G--KCFMANVREESEKGGGLV 258 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~--~~~~~~~~~~~~~~~~~~ 258 (524)
.+.||+.|+++|...|... .+..+.+.|+|++|+|||++++.+++.+..... . .+.+. +... .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~~~----~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-ALEL----AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TTCC----C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-cccc----CCHH
Confidence 3889999999999877532 345678999999999999999999998754221 1 22222 2221 4456
Q ss_pred HHHHHHHHhhcccccccCCCCchHHHHHHH------hcCccEEEecCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 259 HLREQVLSEVLDENIKIRTPDLPKYMRERL------QQMKIFIVLDDVNKV---RQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
.++..++.++...... .......+...+ .+++++++||+++.. +.+-.+............||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 7777788776543221 112233333332 346789999999764 22333322100001122334444332
Q ss_pred hh----H-----HHhCCCCcceEEeCCCCHHHHHHHHHhhhc
Q 009845 330 QV----L-----DDFGVLNTNIYEVNGLEYHEALELFCNFAF 362 (524)
Q Consensus 330 ~~----~-----~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~ 362 (524)
.. + ..++ ...+.++|++.+|..+++.+++.
T Consensus 174 d~~~~~L~~~v~SR~~---~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSLKAH---FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHHHTT---EEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC---ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1 1221 25799999999999999998873
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=2.6e-08 Score=98.50 Aligned_cols=197 Identities=12% Similarity=0.135 Sum_probs=111.4
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc--ccceEEEEeeccccccCcChHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE--FEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
.....++|++..++.|..++..+... .+.|+|++|+|||++|+.+++.+... +...+...+.... .+... .
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~-~ 106 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE----RGISI-V 106 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC----CCHHH-H
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc----cchHH-H
Confidence 44577999999999999998754322 38999999999999999999876432 2222222211111 12222 2
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHHHhCCC
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ-VLDDFGVL 338 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~~~~~ 338 (524)
.+.+..+....... .... .....-..++.+|++|+++.. .....+...+.......++|++|.... +..... .
T Consensus 107 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~-s 182 (353)
T 1sxj_D 107 REKVKNFARLTVSK-PSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA-S 182 (353)
T ss_dssp TTHHHHHHHSCCCC-CCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-H
T ss_pred HHHHHHHhhhcccc-cchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh-c
Confidence 22222211110000 0000 000111234569999999543 333344433322234567777765442 111110 1
Q ss_pred CcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 339 NTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 339 ~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
....+.+.+++.++..+++...+...... ...+....|++.++|+|..+..+.
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11578999999999999999876443321 224667889999999998754443
No 31
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.87 E-value=1.5e-08 Score=90.49 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=42.1
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.....++||+.+++++.+.+... ..+.+.|+|++|+|||+||+.+++.+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999998743 346789999999999999999998764
No 32
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.85 E-value=9.4e-09 Score=95.60 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=101.6
Q ss_pred CCCCccccc---hhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH
Q 009845 185 DFNGFVGLN---SRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 185 ~~~~~vGR~---~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
....|+|.+ ..++.+..+...+ ..+.+.|+|++|+|||+||+.+++..........++. ....... .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI---S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---H----
Confidence 446788743 4556666666532 4568999999999999999999987665433333443 2211110 0
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHH----HHHHhcCCCCC-CCC-cEEEEEeCChh-----
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQ----LEYLTGGLDQF-GPG-SRLIITTRDKQ----- 330 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~l~~~~~~~-~~~-~~iliTsR~~~----- 330 (524)
. ... +. -.++.+|||||++.... .+.+...+... ..+ .++|+||+...
T Consensus 96 ----~------------~~~----~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----T------------ALL----EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----G------------GGG----TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----H------------HHH----Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 000 00 13467999999954321 22222211100 112 24777776432
Q ss_pred ----hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHH
Q 009845 331 ----VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSF 395 (524)
Q Consensus 331 ----~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 395 (524)
+...+.. ...+++++++.++..+++...+..... ....+....+++.++|++-.+..+...
T Consensus 155 ~~~~l~~r~~~--~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 155 VLPDLVSRMHW--GLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCHHHHHHHHH--SEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhhhhhHhhc--CceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 1111110 157999999999999999987743222 122466778999999998877655443
No 33
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=3.3e-08 Score=102.79 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=104.5
Q ss_pred CCCCCccccchhhhhHHHhhccC---------------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeec
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIG---------------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVR 248 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 248 (524)
.....++|++..+++|..++... .+..+.+.|+|++|+|||+||+.+++.... .+...+..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~----~~i~in~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY----DILEQNAS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----EEEEECTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----CEEEEeCC
Confidence 34567999999999999998641 013478999999999999999999988721 12222221
Q ss_pred cccccCcChHHHHHHHHHhhcccccccCCCCchHHHHH--HHhcCccEEEecCCCCH--------HHHHHHhcCCCCCCC
Q 009845 249 EESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRE--RLQQMKIFIVLDDVNKV--------RQLEYLTGGLDQFGP 318 (524)
Q Consensus 249 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~--~l~~~~~LlVlDdv~~~--------~~~~~l~~~~~~~~~ 318 (524)
.. .. .......+....... ... ........ ...+++.+|+||+++.. ..+..++.. .
T Consensus 112 ~~----~~-~~~~~~~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~ 178 (516)
T 1sxj_A 112 DV----RS-KTLLNAGVKNALDNM-SVV--GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----T 178 (516)
T ss_dssp SC----CC-HHHHHHTGGGGTTBC-CST--TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----C
T ss_pred Cc----ch-HHHHHHHHHHHhccc-cHH--HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----c
Confidence 11 11 122222222211100 000 00000000 01356789999999543 223333322 2
Q ss_pred CcEEEEEeCChh--hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHH-HHHH
Q 009845 319 GSRLIITTRDKQ--VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLA-LRVL 392 (524)
Q Consensus 319 ~~~iliTsR~~~--~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~~ 392 (524)
+..||+++.+.. .+.... .....+.+++++.++..+++...+....... ..+....|++.++|++-. +..+
T Consensus 179 ~~~iIli~~~~~~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 179 STPLILICNERNLPKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SSCEEEEESCTTSSTTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCEEEEEcCCCCccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 334555554322 111111 1126799999999999999987764322111 124577889999996654 4443
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.83 E-value=1.4e-07 Score=93.18 Aligned_cols=206 Identities=17% Similarity=0.153 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHhhhhcccCCCCCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHh
Q 009845 162 EAKLVDEIINDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 162 ~~~~i~~i~~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~ 231 (524)
+..+++.+...+... .++.....++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.++
T Consensus 63 ~~~~~~~i~~~i~~~----~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH----GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCC----SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccC----CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 334444444444332 2334456799999999999887642 11235689999999999999999999
Q ss_pred hhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--------
Q 009845 232 NLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------- 303 (524)
Q Consensus 232 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------- 303 (524)
+..... ++..+.........+. .... ....+......++.+|+||+++..
T Consensus 139 ~~~~~~----~~~i~~~~l~~~~~g~---~~~~---------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~ 196 (357)
T 3d8b_A 139 SQSGAT----FFSISASSLTSKWVGE---GEKM---------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGE 196 (357)
T ss_dssp HHTTCE----EEEEEGGGGCCSSTTH---HHHH---------------HHHHHHHHHHTCSEEEEEETHHHHTBC-----
T ss_pred HHcCCe----EEEEehHHhhccccch---HHHH---------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCc
Confidence 876322 2222222221110000 0000 111122222356789999999533
Q ss_pred -----HHHHHHhcCCC----CCCCCcEEEEEeCChhhH-HHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHH
Q 009845 304 -----RQLEYLTGGLD----QFGPGSRLIITTRDKQVL-DDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLV 373 (524)
Q Consensus 304 -----~~~~~l~~~~~----~~~~~~~iliTsR~~~~~-~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~ 373 (524)
.....++..+. ....+..||.||.....+ ..........+.++..+.++..+++...+...... ...+
T Consensus 197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~ 274 (357)
T 3d8b_A 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEE 274 (357)
T ss_dssp -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHH
Confidence 11222322211 112344556566544221 11111111578899999999999988776432211 1235
Q ss_pred HHHHHHHHhCC-ChHHHHHHHHH
Q 009845 374 LLEHVVKYANG-NPLALRVLGSF 395 (524)
Q Consensus 374 ~~~~i~~~~~G-~PLal~~~~~~ 395 (524)
....+++.+.| .+-.|..++..
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 67788999988 56667766554
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.83 E-value=1.3e-07 Score=89.79 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=92.2
Q ss_pred CCccccchhhhhHHH-------hhcc-CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChH
Q 009845 187 NGFVGLNSRIEEIKS-------LLCI-GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLV 258 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~-------~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 258 (524)
..++|.+..++.+.. .+.. .....+.+.|+|++|+|||+||+.+++.....| +.+. ....... ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~~~~g-~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPDKMIG-FSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGGGCTT-CCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHHHhcC-CchH
Confidence 457888877766665 2221 234567899999999999999999998743221 1121 1110000 0000
Q ss_pred HHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH------------HHHHHHhcCCC---CCCCCcEEE
Q 009845 259 HLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV------------RQLEYLTGGLD---QFGPGSRLI 323 (524)
Q Consensus 259 ~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~~~---~~~~~~~il 323 (524)
..... ....+......++.+|+||+++.. ..++.+...+. .......||
T Consensus 108 ~~~~~----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 108 AKCQA----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HHHHH----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HHHHH----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00000 111222233456889999998543 12233332222 122334567
Q ss_pred EEeCChhhHHHhCC--CCcceEEeCCCCH-HHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC
Q 009845 324 ITTRDKQVLDDFGV--LNTNIYEVNGLEY-HEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG 384 (524)
Q Consensus 324 iTsR~~~~~~~~~~--~~~~~~~l~~L~~-~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 384 (524)
.||.....+..... .-...+.+++++. ++..+++.... .. ..+....+++.+.|
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKG 228 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTT
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcC
Confidence 77777655443111 1126789999988 66666665532 11 13456778888887
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.82 E-value=1.5e-07 Score=93.61 Aligned_cols=203 Identities=14% Similarity=0.048 Sum_probs=108.4
Q ss_pred CCCccccchhhhhHH---HhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHH
Q 009845 186 FNGFVGLNSRIEEIK---SLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~---~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
...|+|++..++.+. ..+..+....+.+.|+|++|+|||+||+.+++.+....+ .+...................
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP--FTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC--EEEEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC--cccccchhhhhcccchhHHHH
Confidence 568999999977754 444444333578999999999999999999998764322 111111111111122333333
Q ss_pred HHHHh-hccc--------------------c------cccCC---C-CchHHHHHHH-----hcC----ccEEEecCCCC
Q 009845 263 QVLSE-VLDE--------------------N------IKIRT---P-DLPKYMRERL-----QQM----KIFIVLDDVNK 302 (524)
Q Consensus 263 ~l~~~-l~~~--------------------~------~~~~~---~-~~~~~l~~~l-----~~~----~~LlVlDdv~~ 302 (524)
+.+.. .+.. . ..... . .....+.... .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 33222 1100 0 00000 0 1112221111 122 46999999964
Q ss_pred H--HHHHHHhcCCCCCCCCcEEEEEeCC------------h-hhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCC
Q 009845 303 V--RQLEYLTGGLDQFGPGSRLIITTRD------------K-QVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYC 367 (524)
Q Consensus 303 ~--~~~~~l~~~~~~~~~~~~iliTsR~------------~-~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~ 367 (524)
. +....+...+...... .++++|.. . .+.... ......+.+++++.++..+++...+......
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l-~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDL-LDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHH-HTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHH-HhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3 3444444444322222 34444431 1 111111 0112568999999999999999877443321
Q ss_pred CchHHHHHHHHHHHhC-CChHHHHHHHH
Q 009845 368 LDDLLVLLEHVVKYAN-GNPLALRVLGS 394 (524)
Q Consensus 368 ~~~~~~~~~~i~~~~~-G~PLal~~~~~ 394 (524)
...+....+++.+. |+|-.+..+..
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 23456788899998 88877655443
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.82 E-value=3.7e-08 Score=100.09 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=105.2
Q ss_pred CCCcc-ccchhh--hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHH
Q 009845 186 FNGFV-GLNSRI--EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLRE 262 (524)
Q Consensus 186 ~~~~v-GR~~~l--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 262 (524)
.+.|+ |....+ ..+..+...+.. ...+.|+|++|+||||||+.+++.+...++..-++. .....+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~---------v~~~~~~~ 173 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY---------ITSEKFLN 173 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE---------EEHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE---------eeHHHHHH
Confidence 35566 655443 233333332222 568999999999999999999998766543322221 01112223
Q ss_pred HHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCChh-------
Q 009845 263 QVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----QLEYLTGGLDQ-FGPGSRLIITTRDKQ------- 330 (524)
Q Consensus 263 ~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsR~~~------- 330 (524)
.+...+... ....+...+..++.+|+|||++... ..+.+...+.. ...+..||+||.+..
T Consensus 174 ~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 174 DLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 333332211 1223334444367899999994332 22333322211 134678888887632
Q ss_pred --hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 331 --VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 331 --~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
+...+... ..+.+++++.++..+++.+.+...+... ..+....|++.++|++--+.-+.
T Consensus 246 ~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 246 DRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHH
Confidence 12222111 4689999999999999988764222111 12456778899999997665443
No 38
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.81 E-value=8.3e-08 Score=91.82 Aligned_cols=186 Identities=22% Similarity=0.259 Sum_probs=105.7
Q ss_pred CCCCCCccccchhhhhHHHhhccC-----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccc
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIG-----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREES 251 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 251 (524)
......++|.+..+++|...+... ....+.+.|+|++|+|||+||+.+++.....| +........
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHH
Confidence 344567999999999998877431 13456799999999999999999998764332 222121111
Q ss_pred ccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCC-
Q 009845 252 EKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLD- 314 (524)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~- 314 (524)
....+ .. .. .....+.......+.+|+||+++.. ..+..++..+.
T Consensus 89 ~~~~~--~~-~~---------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 KKFIG--EG-AS---------------LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CCSTT--HH-HH---------------HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred Hhccc--hH-HH---------------HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 11000 00 00 0112222333456789999999643 12222222211
Q ss_pred -CCCCCcEEEEEeCChhhHHH--hCC-CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC-ChHHH
Q 009845 315 -QFGPGSRLIITTRDKQVLDD--FGV-LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG-NPLAL 389 (524)
Q Consensus 315 -~~~~~~~iliTsR~~~~~~~--~~~-~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal 389 (524)
....+..||.||.....+.. ... .-...+.+++++.++..+++...+........ .....++..+.| .|-.|
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 11235567777765533211 110 11147899999999999999888744332211 124567777777 46556
Q ss_pred HHHH
Q 009845 390 RVLG 393 (524)
Q Consensus 390 ~~~~ 393 (524)
..+.
T Consensus 228 ~~l~ 231 (285)
T 3h4m_A 228 KAIC 231 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=3.1e-08 Score=97.99 Aligned_cols=199 Identities=14% Similarity=0.110 Sum_probs=106.6
Q ss_pred CCCCCccccchhhhhHHHhh-ccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEe----------------
Q 009845 184 SDFNGFVGLNSRIEEIKSLL-CIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMAN---------------- 246 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---------------- 246 (524)
.....++|.+..++.|.+++ ..+. ... +.|+|++|+|||||++.++..+.....+.+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34467999999999999988 5433 233 8999999999999999998854322111111110
Q ss_pred -------eccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCC
Q 009845 247 -------VREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFG 317 (524)
Q Consensus 247 -------~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~ 317 (524)
... ...........+.++..+..... .. ... .+ ..+.+++-++|||+++.. .....+...+....
T Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~--~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITP-SDMGNNDRIVIQELLKEVAQMEQ-VD--FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECC-C----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecH-hhcCCcchHHHHHHHHHHHHhcc-cc--ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 000 00000000011222222111000 00 000 00 002346779999999653 22333333332224
Q ss_pred CCcEEEEEeCChh-hHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchH-HHHHHHHHHHhCCChHHHHHHH
Q 009845 318 PGSRLIITTRDKQ-VLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDL-LVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 318 ~~~~iliTsR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~~ 393 (524)
.+..+|++|.+.. +..... .....+++++++.++..+++...+...+.. .. .+.+..|++.++|++..+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIK-SQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHH-hhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677887776642 222111 112789999999999999999876432211 11 2567889999999987665443
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.73 E-value=4.2e-07 Score=87.45 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=108.6
Q ss_pred HHHHhhhhcccCCCCCCCccccchhhhhHHHhhccC----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccc
Q 009845 171 NDILKKLKARSFSSDFNGFVGLNSRIEEIKSLLCIG----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEG 240 (524)
Q Consensus 171 ~~v~~~l~~~~~~~~~~~~vGR~~~l~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 240 (524)
+.+...+....++.....++|.+..++.|..++..+ ....+.+.|+|++|+|||+||+.++......|
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~-- 82 (297)
T 3b9p_A 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF-- 82 (297)
T ss_dssp HHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE--
T ss_pred HHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe--
Confidence 333434333234445578999999999998876321 12356899999999999999999998764322
Q ss_pred eEEEEeeccccccCcC-hHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-------------HHH
Q 009845 241 KCFMANVREESEKGGG-LVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------------RQL 306 (524)
Q Consensus 241 ~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~ 306 (524)
+..+.........+ .... ....+.......+.+|+||+++.. ...
T Consensus 83 --~~i~~~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~ 141 (297)
T 3b9p_A 83 --LNISAASLTSKYVGDGEKL-------------------VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLK 141 (297)
T ss_dssp --EEEESTTTSSSSCSCHHHH-------------------HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHH
T ss_pred --EEeeHHHHhhcccchHHHH-------------------HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHH
Confidence 22212111111000 0111 111122223456789999999543 111
Q ss_pred HHHhcC---CCC--CCCCcEEEEEeCChhh-----HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHH
Q 009845 307 EYLTGG---LDQ--FGPGSRLIITTRDKQV-----LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLE 376 (524)
Q Consensus 307 ~~l~~~---~~~--~~~~~~iliTsR~~~~-----~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~ 376 (524)
..++.. ... .+.+..||.||..... ... .. ..+.++..+.++...++...+....... ..+...
T Consensus 142 ~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~--~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~ 215 (297)
T 3b9p_A 142 TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FT--KRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALR 215 (297)
T ss_dssp HHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CC--EEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHH
T ss_pred HHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CC--eEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHH
Confidence 122211 111 1123456666665421 221 22 5678888888888888887664322211 234567
Q ss_pred HHHHHhCCChH-HHHHHHHH
Q 009845 377 HVVKYANGNPL-ALRVLGSF 395 (524)
Q Consensus 377 ~i~~~~~G~PL-al~~~~~~ 395 (524)
.+++.+.|++- .|..+...
T Consensus 216 ~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 216 RLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp HHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 88999999876 66555443
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=9.3e-08 Score=97.01 Aligned_cols=181 Identities=15% Similarity=0.227 Sum_probs=105.9
Q ss_pred CCCCCCccccchhh---hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 183 SSDFNGFVGLNSRI---EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 183 ~~~~~~~vGR~~~l---~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
|.....++|.+..+ ..|...+..+. .+.+.|+|++|+||||||+.+++.....|.. +. ... .+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~---a~~---~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---IS---AVT---SGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE---TTT---CCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE---ecc---CCHHH
Confidence 34557899999988 77777776443 3689999999999999999999876543321 11 111 22222
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH--HHHHHhcCCCCCCCCcEEEE-EeCChhh--HHH
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR--QLEYLTGGLDQFGPGSRLII-TTRDKQV--LDD 334 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ili-TsR~~~~--~~~ 334 (524)
+. .++.. .......+++.+|+||+++... +.+.|+..+.. ....+|. ||.+... ...
T Consensus 91 ir-~~~~~---------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IR-EAIER---------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HH-HHHHH---------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HH-HHHHH---------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 21 11111 0111124568899999996542 23333333221 2234443 5555421 111
Q ss_pred hCCCCcceEEeCCCCHHHHHHHHHhhhcCCC-----CCCchHHHHHHHHHHHhCCChHHHHHHH
Q 009845 335 FGVLNTNIYEVNGLEYHEALELFCNFAFKHD-----YCLDDLLVLLEHVVKYANGNPLALRVLG 393 (524)
Q Consensus 335 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~~ 393 (524)
. ......+.+.+++.++..+++.+.+.... .......+....+++.++|++-.+.-+.
T Consensus 153 L-~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 L-LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp H-HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred H-hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 11126789999999999999988764311 1122344677888999999987665433
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.72 E-value=4.5e-07 Score=88.29 Aligned_cols=186 Identities=13% Similarity=0.030 Sum_probs=106.8
Q ss_pred CCCCCCccccchhhhhHHHhhc----------cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccc
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLC----------IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESE 252 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 252 (524)
+..-..++|.+..++.|..++. ......+.+.|+|++|+|||+||+.+++..... ++..+......
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhh
Confidence 3445678999999999988762 122235679999999999999999999875433 22221111100
Q ss_pred cCc-ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-------------HHHHHhcCCC---C
Q 009845 253 KGG-GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-------------QLEYLTGGLD---Q 315 (524)
Q Consensus 253 ~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~---~ 315 (524)
... .... .....+......++.+|+||+++... ....++..+. .
T Consensus 90 ~~~g~~~~-------------------~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 90 KWMGESEK-------------------LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TTGGGHHH-------------------HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred cccchHHH-------------------HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 000 0000 01112222334567899999996431 1223322221 1
Q ss_pred CCCCcEEEEEeCChhhHHH---hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC-ChHHHHH
Q 009845 316 FGPGSRLIITTRDKQVLDD---FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG-NPLALRV 391 (524)
Q Consensus 316 ~~~~~~iliTsR~~~~~~~---~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 391 (524)
...+..||.||.....+.. .... ..+.++..+.++-.+++...+...... ........+++.+.| .+-.|..
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFE--RRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCC--EEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccC--eEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 2345556667765432110 0122 568899999999999999887543321 123456788888887 4556665
Q ss_pred HHHH
Q 009845 392 LGSF 395 (524)
Q Consensus 392 ~~~~ 395 (524)
++..
T Consensus 227 l~~~ 230 (322)
T 3eie_A 227 VVKD 230 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.71 E-value=2.8e-07 Score=90.96 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=104.5
Q ss_pred CCCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK 253 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 253 (524)
.....++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.+++..... ++..+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~----- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSS----- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHH-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHH-----
Confidence 3446799999999999876621 11224568999999999999999999876432 2222111
Q ss_pred CcChHHHHHHHHHhhcccccccCCCC-chHHHHHHHhcCccEEEecCCCCHH-------------HHHHHhcCCC---CC
Q 009845 254 GGGLVHLREQVLSEVLDENIKIRTPD-LPKYMRERLQQMKIFIVLDDVNKVR-------------QLEYLTGGLD---QF 316 (524)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~---~~ 316 (524)
.+. ..... .... ....+......++.+|+||+++... ....++..+. ..
T Consensus 119 -----~l~----~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 119 -----DLV----SKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp -----HHH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred -----HHh----hhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 110 00000 0001 1112222234578899999996432 1223322221 11
Q ss_pred CCCcEEEEEeCChhhHH---HhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC-ChHHHHHH
Q 009845 317 GPGSRLIITTRDKQVLD---DFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG-NPLALRVL 392 (524)
Q Consensus 317 ~~~~~iliTsR~~~~~~---~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 392 (524)
..+..||.||.....+. ..... ..+.++..+.++-.+++...+...... ........|++.+.| .+-.|..+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFE--RRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCC--EEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccC--EEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 23455665665442111 11222 678899999999999998877443211 123456788899988 45556665
Q ss_pred HHH
Q 009845 393 GSF 395 (524)
Q Consensus 393 ~~~ 395 (524)
+..
T Consensus 261 ~~~ 263 (355)
T 2qp9_X 261 VKD 263 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.69 E-value=5.6e-07 Score=84.74 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=101.5
Q ss_pred CCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 186 FNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
...++|.+..++.|.+++.. +....+.+.|+|++|+|||+||+.+++..... ++..+.........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhcc
Confidence 45688998888888765421 11235678999999999999999999876432 22222221111100
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-----------------HHHHHhcCCCC--C
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-----------------QLEYLTGGLDQ--F 316 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~ 316 (524)
+. ... .....+.......+.+|+||+++... .+..++..+.. .
T Consensus 81 ~~---~~~---------------~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 GL---GAA---------------RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp TH---HHH---------------HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred Ch---hHH---------------HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 000 01122333334567899999997541 12233322211 1
Q ss_pred CCCcEEEEEeCChhhHH-HhCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 009845 317 GPGSRLIITTRDKQVLD-DFGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL-ALRVL 392 (524)
Q Consensus 317 ~~~~~iliTsR~~~~~~-~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 392 (524)
..+..||.||.....+. .... .-...+.+++.+.++-.+++...+....... ........+++.+.|++- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHHH
Confidence 23455666666543221 1111 1115788999999999999988764333222 222234678888888754 55554
Q ss_pred HHH
Q 009845 393 GSF 395 (524)
Q Consensus 393 ~~~ 395 (524)
...
T Consensus 222 ~~~ 224 (262)
T 2qz4_A 222 CNE 224 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.69 E-value=2.2e-07 Score=89.99 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=88.7
Q ss_pred CccccchhhhhHHHhhccC-------------CCCceEEEEeccCcchhhHHHHHHhhhhccccc--c-eEEEEeecccc
Q 009845 188 GFVGLNSRIEEIKSLLCIG-------------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE--G-KCFMANVREES 251 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~ 251 (524)
.++|.+..++.|..++... ......+.|+|++|+|||+||+.+++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4899999998888765421 234567999999999999999999887643211 1 12222111111
Q ss_pred ccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH-hcCccEEEecCCC-----------CHHHHHHHhcCCCCCCCC
Q 009845 252 EKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL-QQMKIFIVLDDVN-----------KVRQLEYLTGGLDQFGPG 319 (524)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~~ 319 (524)
....+ .....+...+ ..++.+|+||+++ .......++..+.....+
T Consensus 112 ~~~~g----------------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQYIG----------------------HTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CSSTT----------------------CHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hhccc----------------------ccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00000 0111111111 1245699999997 334445555444333456
Q ss_pred cEEEEEeCChhh----------HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcC
Q 009845 320 SRLIITTRDKQV----------LDDFGVLNTNIYEVNGLEYHEALELFCNFAFK 363 (524)
Q Consensus 320 ~~iliTsR~~~~----------~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~ 363 (524)
..+|+||..... ...+ . ..+.+++++.++..+++...+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~--~--~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRI--A--HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHE--E--EEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhC--C--eEEEcCCcCHHHHHHHHHHHHHH
Confidence 677888764321 1111 1 67999999999999999887743
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.69 E-value=7.4e-07 Score=86.86 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=99.2
Q ss_pred CCCCcc-ccchh--hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH
Q 009845 185 DFNGFV-GLNSR--IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 185 ~~~~~v-GR~~~--l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
..+.|+ |.... ...+..++..+......+.|+|++|+|||+||+.+++.....-...+++. . ..+.
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~ 77 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFA 77 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHH
Confidence 345676 54433 33444544433223567999999999999999999987654311222332 1 1222
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCChhh-----
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----QLEYLTGGLDQ-FGPGSRLIITTRDKQV----- 331 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsR~~~~----- 331 (524)
..+...+... ....+...+ .++.+|+||+++... ..+.+...+.. ...+..||+||.+...
T Consensus 78 ~~~~~~~~~~--------~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 78 QAMVEHLKKG--------TINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHHT--------CHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHHcC--------cHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 2232222111 112222323 347899999995432 22222222110 1245678888764421
Q ss_pred ----HHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 332 ----LDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 332 ----~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
...+... ..+++++ +.++..+++...+...... ...+....+++.+ |++-.+.
T Consensus 149 ~~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 149 SDRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp CHHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHHH
T ss_pred hhHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHHH
Confidence 1122111 5689999 9999999999877433321 2235677888889 8876543
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.69 E-value=3.6e-07 Score=92.93 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=109.4
Q ss_pred CCCCCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccc
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREES 251 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 251 (524)
++.....++|.+...+.|...+.. .....+.+.|+|++|+|||+||+.+++.... ..++..+...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~-- 203 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD-- 203 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH--
Confidence 334457799999999998876621 1123578999999999999999999987621 1122221111
Q ss_pred ccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-------------HHHHHHhcCCCCC--
Q 009845 252 EKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------------RQLEYLTGGLDQF-- 316 (524)
Q Consensus 252 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~-- 316 (524)
+.... .+. ........+.......+.+|+||+++.. .....++..+...
T Consensus 204 --------l~~~~---~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 204 --------LVSKW---LGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp ------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred --------HHhhh---cch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 11111 010 0112222333333457889999999754 2344555554432
Q ss_pred -CCCcEEEEEeCChhhHH-HhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHHHH
Q 009845 317 -GPGSRLIITTRDKQVLD-DFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN-PLALRVLG 393 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 393 (524)
..+..||.||.....+. .........+.++..+.++-.+++...+..... .........|++.+.|. +-.|..++
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 24456666665543211 111111157888888999999999887743321 11234567888999884 55666655
Q ss_pred HH
Q 009845 394 SF 395 (524)
Q Consensus 394 ~~ 395 (524)
..
T Consensus 346 ~~ 347 (444)
T 2zan_A 346 RD 347 (444)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.64 E-value=2e-06 Score=83.62 Aligned_cols=185 Identities=15% Similarity=0.092 Sum_probs=103.7
Q ss_pred CCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
.-..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++..+........
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKW 86 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhh
Confidence 345678888888877765521 1223478999999999999999999987621 112222221111100
Q ss_pred c-ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-------------HHHHHhcCCC---CCC
Q 009845 255 G-GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-------------QLEYLTGGLD---QFG 317 (524)
Q Consensus 255 ~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~---~~~ 317 (524)
. ..... ....+......++.+|+||+++... ....++..+. ...
T Consensus 87 ~g~~~~~-------------------~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 87 LGESEKL-------------------VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp CCSCHHH-------------------HHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred hhHHHHH-------------------HHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 0 00111 1111222234578899999997541 1222322221 112
Q ss_pred CCcEEEEEeCChhhHH-H--hCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHHHH
Q 009845 318 PGSRLIITTRDKQVLD-D--FGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN-PLALRVLG 393 (524)
Q Consensus 318 ~~~~iliTsR~~~~~~-~--~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 393 (524)
.+..||.||.....+. . .... ..+.++..+.++-.+++...+...... ........|++.+.|. +-.|..++
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFE--KRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCC--EEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcC--eEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445555665442211 1 1222 578899999999999998877433211 1235577889999887 55566665
Q ss_pred HH
Q 009845 394 SF 395 (524)
Q Consensus 394 ~~ 395 (524)
..
T Consensus 224 ~~ 225 (322)
T 1xwi_A 224 RD 225 (322)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.61 E-value=9.8e-07 Score=88.31 Aligned_cols=189 Identities=17% Similarity=0.080 Sum_probs=104.5
Q ss_pred CCCCCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccc
Q 009845 182 FSSDFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREES 251 (524)
Q Consensus 182 ~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 251 (524)
++.....++|.+..++.|..++.. .....+.+.|+|++|+|||+||+.+++..... ++..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhh
Confidence 334457899999999999987721 11224689999999999999999998875432 2222221111
Q ss_pred ccCc-ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-------------HHHHHHhcCCC---
Q 009845 252 EKGG-GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------------RQLEYLTGGLD--- 314 (524)
Q Consensus 252 ~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~--- 314 (524)
.... .... .....+.......+.+|+||+++.. .....++..+.
T Consensus 186 ~~~~g~~~~-------------------~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SKYVGEGEK-------------------LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp ------CHH-------------------HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred ccccchHHH-------------------HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 1000 0000 0111222222345689999999644 11122221111
Q ss_pred -CCCCCcEEEEEeCChhhHH-HhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHH
Q 009845 315 -QFGPGSRLIITTRDKQVLD-DFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPL-ALRV 391 (524)
Q Consensus 315 -~~~~~~~iliTsR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 391 (524)
.......||.||.....+. .........+.++..+.++-.+++...+....... ..+....+++.+.|..- .|..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHH
Confidence 1122345565665432211 11111114688999999999999988774433221 23466788899988654 6666
Q ss_pred HHHH
Q 009845 392 LGSF 395 (524)
Q Consensus 392 ~~~~ 395 (524)
+...
T Consensus 325 L~~~ 328 (389)
T 3vfd_A 325 LAKD 328 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.61 E-value=1.2e-07 Score=92.46 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=102.8
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHH
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
.....++|.+..++.|.+++..+. ....+.++|++|+|||++|+.+++.+... .+.+. ... .+.. ..+.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~~~-----~~~~-~i~~ 91 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-GSD-----CKID-FVRG 91 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-TTT-----CCHH-HHHT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-ccc-----cCHH-HHHH
Confidence 445789999999999999998443 34678899999999999999999876322 12222 111 2222 2222
Q ss_pred HHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH---HHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCCCCc
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR---QLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGVLNT 340 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~~~~ 340 (524)
.+........ ..+++.+|+|||++... ....+...+.....+..+|+||....-....-....
T Consensus 92 ~~~~~~~~~~--------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 92 PLTNFASAAS--------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHHBCC--------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHHhhcc--------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 2221111000 02367899999997654 334444333222345678888776532110000012
Q ss_pred ceEEeCCCCHHHHHHHH-------HhhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 009845 341 NIYEVNGLEYHEALELF-------CNFAFKHDYCLDDLLVLLEHVVKYANGNPLALR 390 (524)
Q Consensus 341 ~~~~l~~L~~~ea~~ll-------~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 390 (524)
..+++++++.++-.+++ ...+.......+. .+....+++.++|++..+.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 57999999988843332 2222211111110 2567778888988876443
No 51
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.57 E-value=2.6e-07 Score=81.94 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=41.9
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....++||+.+++.+...+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999988642 3557899999999999999999987643
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.56 E-value=1.8e-06 Score=83.07 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=101.3
Q ss_pred CCCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK 253 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 253 (524)
....++|.+..+++|..++.. +-...+.+.|+|++|+|||+||+.++...... .+..+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIK------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEEC-------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEE-------
Confidence 345688999888888876642 12345689999999999999999999876422 11111
Q ss_pred CcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHH----------------HHHHhcCCCC--
Q 009845 254 GGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQ----------------LEYLTGGLDQ-- 315 (524)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~-- 315 (524)
...+..... +.. .......+.......+.+|+||+++.... ...++..+..
T Consensus 82 ---~~~l~~~~~---g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 ---GPELLTMWF---GES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp ---HHHHHHHHH---TTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred ---hHHHHhhhc---Cch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 112222221 111 11123334444456789999999975321 2233322211
Q ss_pred CCCCcEEEEEeCChhhHHH-h-CC-CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 009845 316 FGPGSRLIITTRDKQVLDD-F-GV-LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLA 388 (524)
Q Consensus 316 ~~~~~~iliTsR~~~~~~~-~-~~-~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 388 (524)
...+..||.||.....+.. . .. .-...+.++..+.++-.+++...+......... ....++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 1234566777765532211 1 10 111578999999999999988776432211111 134566677777654
No 53
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=9.7e-07 Score=86.64 Aligned_cols=182 Identities=13% Similarity=0.170 Sum_probs=103.8
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEEeeccccccCcChHHHHHH
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMANVREESEKGGGLVHLREQ 263 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (524)
....++|.+..++.|...+..+. .+.+.++|++|+||||+|+.++..+... +...+.-.+.. .. .+...+ +.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~---~~-~~~~~i-r~ 95 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS---DD-RGIDVV-RN 95 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT---SC-CSHHHH-HT
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc---cc-ccHHHH-HH
Confidence 34568899999999998887542 2238999999999999999999876432 22111111111 10 222222 12
Q ss_pred HHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHHHhCCCCc
Q 009845 264 VLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ-VLDDFGVLNT 340 (524)
Q Consensus 264 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~~~~~~~ 340 (524)
.+..+...... ..+.+-++|+|+++.. .....+...+........+|+++.... +..... ..+
T Consensus 96 ~i~~~~~~~~~-------------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~-sR~ 161 (340)
T 1sxj_C 96 QIKDFASTRQI-------------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL-SQC 161 (340)
T ss_dssp HHHHHHHBCCS-------------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-TTS
T ss_pred HHHHHHhhccc-------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH-hhc
Confidence 22221110000 0123678999999542 333334333222234566777665442 111111 112
Q ss_pred ceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 009845 341 NIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLAL 389 (524)
Q Consensus 341 ~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 389 (524)
..+.+.+++.++..+.+...+...... ...+....+++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 578999999999999888776332221 22356778899999998754
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.49 E-value=1.4e-06 Score=89.20 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=85.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc------cceEEEEeeccccccCcCh
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF------EGKCFMANVREESEKGGGL 257 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 257 (524)
...+.++||+.+++.+...+.... ..-+.|+|++|+|||+||+.+++.+...+ ...++..++.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 445679999999999999987532 34578999999999999999998864321 1112211111
Q ss_pred HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCC
Q 009845 258 VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGV 337 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~ 337 (524)
... .+.........+......++.+|++| ...+....+.+.+. ....++|.+|...........
T Consensus 246 --------~~~----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 --------TKY----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------ccc----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000 00000122333333444678899999 22333333444443 223556655554431111110
Q ss_pred -----CCcceEEeCCCCHHHHHHHHHhhh
Q 009845 338 -----LNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 338 -----~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
.....+.+++++.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 012579999999999999998765
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.49 E-value=8.3e-06 Score=79.68 Aligned_cols=256 Identities=18% Similarity=0.150 Sum_probs=134.8
Q ss_pred CCCCccccchhhhhHHHhhccC---CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHH
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIG---LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLR 261 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 261 (524)
....++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. .. ..... ....++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~-sg~~~---~~~~~l- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VT-SGPVL---VKQGDM- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EE-ETTTC---CSHHHH-
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EE-echHh---cCHHHH-
Confidence 3456889888888887776532 223457999999999999999999987643321 11 00000 011111
Q ss_pred HHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCC--------C----------CCcE
Q 009845 262 EQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQF--------G----------PGSR 321 (524)
Q Consensus 262 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~~~~ 321 (524)
..+. ..+ .++.++++|++... ...+.+...+... + +...
T Consensus 94 ~~~~--------------------~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 AAIL--------------------TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp HHHH--------------------HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred HHHH--------------------HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0110 011 23457778887432 1222222111000 0 1122
Q ss_pred EE-EEeCChhhHHHhCCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHHHhc---
Q 009845 322 LI-ITTRDKQVLDDFGVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVLGSFLH--- 397 (524)
Q Consensus 322 il-iTsR~~~~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~--- 397 (524)
++ .|++...+.............+++.+.++..+++.+.+..... ....+.+..|++++.|.|-.+..+...+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 22 3444332221111111145889999999999999887633222 22346688899999999976544433221
Q ss_pred ---CC---CHHHHHHHHHHhhcCCCccHHHHHhhccccCChhhHhHhhhhcc-c-cCCCCHHHHHHHHHhcCccHH----
Q 009845 398 ---QK---SKLEWENALENLKMISDPDIYDVLKISYNELKLEEKNIFLDIAC-F-FAGEDKDFVLRILEVSNCVLN---- 465 (524)
Q Consensus 398 ---~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~-f-~~~~~~~~l~~~~~~~~~~l~---- 465 (524)
+. +....+.++..+. ..-..++...+.++..++- | ..+...+.+......+...++
T Consensus 231 ~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 11 2233333333221 1113455555555554442 3 233556666665554322222
Q ss_pred -HHhhCCCceecCCCeEEcc
Q 009845 466 -VLVHKSLITLSYSNKLQMH 484 (524)
Q Consensus 466 -~L~~~sLi~~~~~~~~~mH 484 (524)
.|...|+|+....|++-..
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTE 318 (334)
T ss_dssp HHHHHTTSEEEETTEEEECH
T ss_pred HHHHHcCCeecccccHHhhH
Confidence 7889999998877776443
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.48 E-value=2.1e-06 Score=83.91 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=98.9
Q ss_pred chhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcc--
Q 009845 193 NSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLD-- 270 (524)
Q Consensus 193 ~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-- 270 (524)
+...+.|...+..+. -.+.+.++|++|+|||++|+.+++.+....... . . . .+.-.....+...-..
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~-~----~----c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-H-K----S----CGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-T-B----C----CSCSHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-C-C----C----CCCCHHHHHHhcCCCCCE
Confidence 344556666665332 356799999999999999999998754322100 0 0 0 0000001111110000
Q ss_pred --cccc-cCCC---CchHHHHHHH-----hcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHHHhC
Q 009845 271 --ENIK-IRTP---DLPKYMRERL-----QQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDKQ-VLDDFG 336 (524)
Q Consensus 271 --~~~~-~~~~---~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~~-~~~~~~ 336 (524)
-... .... +....+.+.+ .+++-++|+|+++.. +....++..+....++..+|++|.+.. +.....
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 0000 0000 0111111221 245679999999653 344555554443345667777776653 222221
Q ss_pred CCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 337 VLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
.....+++++++.++..+++.... .. ..+.+..+++.++|.|..+..+
T Consensus 157 -SRc~~~~~~~~~~~~~~~~L~~~~---~~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 157 -SRCRLHYLAPPPEQYAVTWLSREV---TM----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -TTSEEEECCCCCHHHHHHHHHHHC---CC----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred -hcceeeeCCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 123789999999999999998876 11 1245678999999999866443
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.41 E-value=2.5e-06 Score=94.13 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.1
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+.++||+.+++.+...+.... .+.+.|+|++|+|||+||+.+++.+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445779999999999999887432 345789999999999999999987643
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.39 E-value=8.9e-07 Score=90.72 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=102.4
Q ss_pred CCccccchhhhhHHHhhccC-----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
..++|.+..+++|.+++... ....+.+.|+|++|+|||+||+.+++..... ++..++........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhhhc
Confidence 56899999999998877532 3345679999999999999999998875322 22222211111100
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH-------------HHHHHHhcCCCC--CCCCc
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV-------------RQLEYLTGGLDQ--FGPGS 320 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~~~ 320 (524)
+ .... .....+.....+++.+|+||+++.. .....|+..+.. ...+.
T Consensus 280 g--~~~~----------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 280 G--ESES----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp T--HHHH----------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred c--hhHH----------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 0 0000 1223334444567889999999321 112223222211 12344
Q ss_pred EEEEEeCChhhH-HHhCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHHHHH
Q 009845 321 RLIITTRDKQVL-DDFGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN-PLALRVLGS 394 (524)
Q Consensus 321 ~iliTsR~~~~~-~~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 394 (524)
.||.||.....+ ..... .....+.++..+.++-.++|..++........ .....++..+.|+ +-.|..+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHHHH
Confidence 566666655321 11111 11146899999999999999987743221111 1235566777775 555555443
No 59
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.38 E-value=5.4e-07 Score=76.62 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=37.6
Q ss_pred CccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 188 GFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 589999999999987754333445688999999999999999987643
No 60
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.34 E-value=1.8e-06 Score=83.39 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=37.6
Q ss_pred CccccchhhhhHHHhhcc------------CCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 188 GFVGLNSRIEEIKSLLCI------------GLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|.+..++.+...+.. .......+.|+|++|+|||+||+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999888888876643 012245788999999999999999998763
No 61
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.5e-05 Score=78.60 Aligned_cols=173 Identities=22% Similarity=0.275 Sum_probs=99.8
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
-..+.|.+...++|.+.+.. +-...+-|.++||||+|||.||+++++.....| +...........
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 35678889888888775531 233467899999999999999999999865442 222222221110
Q ss_pred cC-hHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 009845 255 GG-LVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF- 316 (524)
Q Consensus 255 ~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 316 (524)
.+ .... +...+...-...+++|+||+++... .+..++..+..+
T Consensus 223 vGese~~-------------------vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRM-------------------VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHH-------------------HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHH-------------------HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 11 0111 1122223335679999999996321 123333332221
Q ss_pred -CCCcEEEEEeCChhhHH-Hh----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 -GPGSRLIITTRDKQVLD-DF----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~-~~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+. .+ ..+ ..+.++..+.++-.++|..++.+....... ....+++.|.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRID--RKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSC--CEEECCCCCHHHHHHHHHHHHTTSBCCSSC---CHHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCc--eEEEcCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHCCCCC
Confidence 23445566666553321 11 233 678999999999999998776433221111 1456778888764
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.26 E-value=7.5e-06 Score=89.22 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=86.2
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc------cceEEEEeeccccccCcCh
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF------EGKCFMANVREESEKGGGL 257 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 257 (524)
...+.++||+.+++.+...+.... ..-+.++|++|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 445679999999999999987532 34578999999999999999998763321 111111111
Q ss_pred HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHhCC
Q 009845 258 VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDFGV 337 (524)
Q Consensus 258 ~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~~~ 337 (524)
+....+.....+...+......++.+|++| ...+....+.+.+. ....++|.+|...........
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000111123344444445678999999 22333334444443 234566666654442111110
Q ss_pred C-----CcceEEeCCCCHHHHHHHHHhhh
Q 009845 338 L-----NTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 338 ~-----~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
+ ....+.+++++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 12579999999999999998655
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.25 E-value=1.2e-05 Score=75.34 Aligned_cols=184 Identities=18% Similarity=0.112 Sum_probs=95.0
Q ss_pred CCCCCccccchhhhhHHHhhcc---C-------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCI---G-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK 253 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 253 (524)
.....++|.+..++++...+.. . ....+.+.|+|++|+||||||+.+++.....| +..+.......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~i~~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE----EEECSCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE----EEEeHHHHHHH
Confidence 3456788988888877665421 0 11244689999999999999999998764322 22211111100
Q ss_pred CcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCCC--
Q 009845 254 GGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLDQ-- 315 (524)
Q Consensus 254 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~-- 315 (524)
.. + .........+.......+.++++|+++.. ..+..++..+..
T Consensus 85 ~~-------------~-----~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 85 FV-------------G-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp CC-------------C-----CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred hh-------------h-----hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00 0 00001112222333345779999998321 122233222111
Q ss_pred CCCCcEEEEEeCChhhH-HHhCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCC-ChHHHHH
Q 009845 316 FGPGSRLIITTRDKQVL-DDFGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANG-NPLALRV 391 (524)
Q Consensus 316 ~~~~~~iliTsR~~~~~-~~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 391 (524)
...+..||.||.....+ ..... .-...+.++..+.++-.+++..........++. ....++..+.| ++--|..
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHHH
Confidence 12345566666655322 11111 111567888888888888887765332211111 13446667777 6665554
Q ss_pred H
Q 009845 392 L 392 (524)
Q Consensus 392 ~ 392 (524)
+
T Consensus 224 l 224 (257)
T 1lv7_A 224 L 224 (257)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.1e-05 Score=77.52 Aligned_cols=175 Identities=23% Similarity=0.261 Sum_probs=99.7
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
-..+.|.+..+++|...+.. +-...+-|.++||||+|||.||+++++..... ++...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcccc
Confidence 45678999998888775531 23346889999999999999999999986543 2233222222111
Q ss_pred cCh-HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 009845 255 GGL-VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF- 316 (524)
Q Consensus 255 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 316 (524)
.+- ... +...+...-...+++|++|+++... .+..++..+..+
T Consensus 256 ~Gese~~-------------------ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARI-------------------IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHH-------------------HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHH-------------------HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 111 111 1112223334679999999996321 122333332211
Q ss_pred -CCCcEEEEEeCChhhHHH-hCCC--CcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 -GPGSRLIITTRDKQVLDD-FGVL--NTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~~-~~~~--~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+.. +-.. -...+.++..+.++-.++|..++......... ....+++.+.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 234566777765543321 1111 11568888888888888888776432211111 1456777787764
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.3e-05 Score=75.69 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=98.3
Q ss_pred CCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 187 NGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
..+.|.+...++|.+.+.. +-...+-|.++||||+|||.||+++++.....| +............
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 5688999999988875421 234578899999999999999999999865442 2222222211111
Q ss_pred Ch-HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC--
Q 009845 256 GL-VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF-- 316 (524)
Q Consensus 256 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 316 (524)
+- ... +...+...-...+++|++|+++... .+..++..+...
T Consensus 285 Gesek~-------------------ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 285 GEGARM-------------------VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SHHHHH-------------------HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHH-------------------HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 11 111 1122233335678999999995321 122223222211
Q ss_pred CCCcEEEEEeCChhhHH-Hh----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 GPGSRLIITTRDKQVLD-DF----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 ~~~~~iliTsR~~~~~~-~~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+. .+ ..+ ..+.++..+.++-.++|..++......... ....|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD--~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRID--RKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCC--EEECCCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhcccccc--EEEEeCCcCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCCC
Confidence 22344555665443221 11 233 678999889999899998776432211111 1456777888763
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.23 E-value=1.1e-06 Score=83.05 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCCCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccc
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESE 252 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 252 (524)
+.....++|.+..++.|...+.. +....+.+.|+|++|+|||+||+.+++.....| +..+......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF----FSMGGSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC----CCCCSCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEechHHHHH
Confidence 34457799999999888876541 112234588999999999999999998764322 1111111100
Q ss_pred cCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHHH-----------------HHHHhcCCCC
Q 009845 253 KGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVRQ-----------------LEYLTGGLDQ 315 (524)
Q Consensus 253 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~l~~~~~~ 315 (524)
... ..........+.......+.+|+||+++.... +..++..+..
T Consensus 83 --------------~~~----~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 83 --------------MFV----GLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp --------------SCS----SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred --------------hhc----chHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 000 00011122233334445678999999964421 2223333321
Q ss_pred CC---CCcEEEEEeCChhhHH-HhCC--CCcceEEeCCCCHHHHHHHHHhhhc
Q 009845 316 FG---PGSRLIITTRDKQVLD-DFGV--LNTNIYEVNGLEYHEALELFCNFAF 362 (524)
Q Consensus 316 ~~---~~~~iliTsR~~~~~~-~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~ 362 (524)
.. ....||.||.....+. .... .-...+.+++.+.++-.+++...+.
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 11 1245666666553221 1111 1114678888999998888887663
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.21 E-value=1.6e-05 Score=76.44 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++|++..+.++...+.........|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988876433344578899999999999999998854
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.21 E-value=1e-05 Score=88.29 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=88.0
Q ss_pred CCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc------ccceEEEEeeccccc---cC
Q 009845 184 SDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE------FEGKCFMANVREESE---KG 254 (524)
Q Consensus 184 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~---~~ 254 (524)
...+.++||+.+++.+...|... ....+.|+|++|+|||+||+.++..+... ....++..+...... ..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 260 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccccc
Confidence 34567999999999999988743 34567899999999999999999876322 122222221111100 00
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------HHHHHHhcCCCCCCCCcEEEE
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------RQLEYLTGGLDQFGPGSRLII 324 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~~~~ili 324 (524)
...... +...+......++.+|+||+++.. .....++..+.. .....+|.
T Consensus 261 g~~e~~-------------------l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~ 320 (758)
T 1r6b_X 261 GDFEKR-------------------FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIG 320 (758)
T ss_dssp SCHHHH-------------------HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEE
T ss_pred chHHHH-------------------HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEE
Confidence 000111 111122222335789999999644 222333333222 23456666
Q ss_pred EeCChhhHHHhC-----CCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 325 TTRDKQVLDDFG-----VLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 325 TsR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
+|.......... ......+.+++++.++..+++....
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 665443211110 0112468999999999999887654
No 69
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.20 E-value=8e-06 Score=78.89 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=39.2
Q ss_pred CccccchhhhhHHHhhccC-------CCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 188 GFVGLNSRIEEIKSLLCIG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.++......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 5889999988888877532 1123589999999999999999999876443
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2e-05 Score=78.72 Aligned_cols=176 Identities=17% Similarity=0.145 Sum_probs=98.9
Q ss_pred CCCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeecccccc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEK 253 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 253 (524)
.-..+.|.+...++|...+.. +-...+-|.++||||+|||.||+++++..... ++..........
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhc
Confidence 346788999998888775421 22346789999999999999999999976543 223322222211
Q ss_pred CcCh-HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC
Q 009845 254 GGGL-VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF 316 (524)
Q Consensus 254 ~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 316 (524)
..+- ....+ ..+...-...+++|++|+++... .+..++..+..+
T Consensus 255 ~vGese~~ir-------------------~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVR-------------------DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHH-------------------HHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHH-------------------HHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 1111 11111 11222334578999999994321 122344333322
Q ss_pred C--CCcEEEEEeCChhhHHH-hCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 G--PGSRLIITTRDKQVLDD-FGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 ~--~~~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
. .+..||.||.....+.. +-. .-...+.++..+.++-.++|..++......... ....|++.+.|+-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCC
Confidence 2 23455556665543221 111 112578898889888888887766332211111 1456777887753
No 71
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.18 E-value=3.7e-06 Score=74.25 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCcccc----chhhhhHHHhhccCC-CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGL----NSRIEEIKSLLCIGL-PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR----~~~l~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+.|++. ...++.+..++..-. +....+.|+|++|+|||||++.++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445543 334444444443211 2356899999999999999999998875
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.16 E-value=8e-06 Score=76.98 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=36.0
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..++|.+..+..+.+.+.........+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999988876653222345788999999999999999988654
No 73
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.15 E-value=6.5e-06 Score=74.11 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCCccccch----hhhhHHHhhccCCCC--ceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 185 DFNGFVGLNS----RIEEIKSLLCIGLPD--FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 185 ~~~~~vGR~~----~l~~l~~~L~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
....|++.+. .++.+..++...... .+.+.|+|++|+|||+||+.+++.........+++
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3456776553 334445555432221 26899999999999999999998876544334444
No 74
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.2e-05 Score=78.43 Aligned_cols=174 Identities=24% Similarity=0.279 Sum_probs=92.9
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
-..+.|.+...++|...+.. +-...+-+.++||||+|||.||+++++..... ++..+........
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~----~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA----FIRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE----EEEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eEEEecchhhccc
Confidence 35678899888888775531 23446789999999999999999999976543 2222222221111
Q ss_pred cCh-HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 009845 255 GGL-VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQF- 316 (524)
Q Consensus 255 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 316 (524)
.+- ... +...+...-...+++|++|+++... .+..++..+..+
T Consensus 247 ~Ge~e~~-------------------ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 247 LGEGPRM-------------------VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CSHHHHH-------------------HHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred cchhHHH-------------------HHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 110 111 1122223334678999999994221 123333222211
Q ss_pred -CCCcEEEEEeCChhhHH-Hh---CCCCcceEEeCCCCH-HHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 -GPGSRLIITTRDKQVLD-DF---GVLNTNIYEVNGLEY-HEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~-~~---~~~~~~~~~l~~L~~-~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+. .+ +.. ...+++++++. ++-.++|..++.+.....+. ....+++.+.|+-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRf-d~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~---dl~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRL-DRKIEFPSLRDRRERRLIFGTIASKMSLAPEA---DLDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSE-EEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC---CHHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcc-eEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHHCCCCC
Confidence 23445666776553221 11 111 14677876654 44455665555332211111 1456777787763
No 75
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.12 E-value=4.7e-05 Score=77.33 Aligned_cols=176 Identities=20% Similarity=0.193 Sum_probs=96.7
Q ss_pred CCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 186 FNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
...++|.+..++++.+.+.. +....+-+.|+|++|+|||+||+.++...... ++..+.........
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHHHHHHh
Confidence 35688888887777765431 11123458899999999999999999875432 22222222111101
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCCCC--C
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLDQF--G 317 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~ 317 (524)
+.. . ......+.....+.+.+|+||+++.. ..+..++..+..+ .
T Consensus 91 g~~---~---------------~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 GVG---A---------------ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp THH---H---------------HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ccc---H---------------HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 100 0 01223344444567899999999542 1233333222111 2
Q ss_pred CCcEEEEEeCChhhHHH-h-CC-CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 318 PGSRLIITTRDKQVLDD-F-GV-LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 318 ~~~~iliTsR~~~~~~~-~-~~-~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
.+..||.||.....+.. . .. .-...+.+++.+.++-.+++..++.......+. ....++..+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 34566667766543321 1 10 011478888888888888887766432211111 1345778888887
No 76
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=9.5e-05 Score=73.10 Aligned_cols=175 Identities=23% Similarity=0.244 Sum_probs=97.4
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
-..+.|.+...++|.+.+.. +-...+-|.++||||+|||.||+++++.....| +..+........
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 35677889888888775421 223467899999999999999999999865442 222222222111
Q ss_pred cCh-HHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCCCC-
Q 009845 255 GGL-VHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLDQF- 316 (524)
Q Consensus 255 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 316 (524)
.+- ....+ ..+...-...+++|++|+++.. ..+..++..+...
T Consensus 257 vGesek~ir-------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 257 LGDGPRLCR-------------------QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SSHHHHHHH-------------------HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHH-------------------HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 111 11111 1222233457899999998532 1122333222111
Q ss_pred -CCCcEEEEEeCChhhHHH-hCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 317 -GPGSRLIITTRDKQVLDD-FGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 317 -~~~~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..+..||.||.....+.. +-. .-...+.++..+.++-.++|..++......... ....|++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCC
Confidence 234456666665543322 111 001467888888888888888776432211111 1456777787763
No 77
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.04 E-value=0.00012 Score=74.70 Aligned_cols=50 Identities=32% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCCccccchhhhhHHHhh---ccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 186 FNGFVGLNSRIEEIKSLL---CIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...++|.+..++.+..++ ..+....+.+.++|++|+|||+||+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999999988766544 33333346799999999999999999998764
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.02 E-value=2e-06 Score=72.91 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=35.9
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
-.++|++..++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999999887753222334688999999999999999887644
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=3.4e-05 Score=74.01 Aligned_cols=146 Identities=10% Similarity=0.047 Sum_probs=86.1
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc---ccccceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS---WEFEGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
|-++.++.|...+..+. .+...++|++|+|||++|..+++... ..++....+. .. ....++..+ +.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~---~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PE---GENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CS---SSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CC---cCCCCHHHH-HHHHHH
Confidence 34566777888887544 67899999999999999999987521 1122333332 11 101233222 233333
Q ss_pred hcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHHHhCCCCcceEE
Q 009845 268 VLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQFGPGSRLIITTRDK-QVLDDFGVLNTNIYE 344 (524)
Q Consensus 268 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsR~~-~~~~~~~~~~~~~~~ 344 (524)
+.... ..+++-++|+|+++.. .....|+..+....+.+.+|++|.+. .+....... .++
T Consensus 74 ~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~ 135 (305)
T 2gno_A 74 LNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFR 135 (305)
T ss_dssp HTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEE
T ss_pred Hhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEe
Confidence 22111 0234668999999643 34455554444334567777766554 333332222 799
Q ss_pred eCCCCHHHHHHHHHhhh
Q 009845 345 VNGLEYHEALELFCNFA 361 (524)
Q Consensus 345 l~~L~~~ea~~ll~~~~ 361 (524)
+.+++.++..+++.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998876
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.88 E-value=2.7e-05 Score=83.79 Aligned_cols=174 Identities=21% Similarity=0.228 Sum_probs=97.5
Q ss_pred CCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 187 NGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
..+.|.+..+++|.+++.. +....+-|.++|++|+|||+||+.+++..... ++..+..+......
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 4578899999888876531 12346789999999999999999999976543 23332211111100
Q ss_pred C-hHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH-------------HHHHHhcCCCCC--CCC
Q 009845 256 G-LVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR-------------QLEYLTGGLDQF--GPG 319 (524)
Q Consensus 256 ~-~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~~ 319 (524)
+ ... .+...+.......+.+|+||+++... .+..++..+... ..+
T Consensus 280 gese~-------------------~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESES-------------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHHH-------------------HHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHHH-------------------HHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 0 001 12222333345678999999995421 122333222111 123
Q ss_pred cEEEEEeCChhhHH-HhCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 320 SRLIITTRDKQVLD-DFGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 320 ~~iliTsR~~~~~~-~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
..||.||.....+. .+.. .-...++++..+.++-.++|..++.+.....+ .....+++.+.|+-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 34555555543321 1111 11257899999999988998877633221111 12456788888774
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.83 E-value=7e-05 Score=81.55 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=83.3
Q ss_pred CCccccchhhhhHHHhhccCC-------CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHH
Q 009845 187 NGFVGLNSRIEEIKSLLCIGL-------PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVH 259 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 259 (524)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++.........+.+ ++..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 468999999988887765321 1123799999999999999999998764332222323 333332221111
Q ss_pred HHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH--HHHHHHhcCCCC-----------CCCCcEEEEEe
Q 009845 260 LREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV--RQLEYLTGGLDQ-----------FGPGSRLIITT 326 (524)
Q Consensus 260 l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~~~~iliTs 326 (524)
...+...++ .....+|+||+++.. +....|+..+.. ......||+||
T Consensus 568 -----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 001122221 234459999999543 333333322211 12345788888
Q ss_pred CChh-----h--------HHH--hCCCCcceEEeCCCCHHHHHHHHHhhh
Q 009845 327 RDKQ-----V--------LDD--FGVLNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 327 R~~~-----~--------~~~--~~~~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
.... . ... ...+ ..+.+++|+.++..+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~--~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRID--EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSS--EEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCC--eEEecCCCCHHHHHHHHHHHH
Confidence 7311 0 000 1122 578999999998888877655
No 82
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.82 E-value=0.00013 Score=69.73 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999999874
No 83
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.71 E-value=3.2e-05 Score=61.28 Aligned_cols=72 Identities=4% Similarity=-0.015 Sum_probs=53.9
Q ss_pred CcccEEEecccCcccccHHHHHHHHHhhCCCcEEecCCcCCCCCcchHHHHHHhhhcceEEEEeccCcccchhhHHHHHH
Q 009845 10 CKYDVFLSFRGEDTRDNFTSRLHAALCRKKINTFIDDEELRRGDCISPAIFDAIQGSKISVIILSKDYASSKWCLNELVK 89 (524)
Q Consensus 10 ~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~ 89 (524)
.+|.+||||+.+|. .+.|...|...|+.. .| ..|+.|.++|++.++...+|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 57999999999982 445555554556642 22 56889999999999999999999999876
Q ss_pred HHHhHhhCCCeeeeee
Q 009845 90 ILECKSMNGQMVVPVF 105 (524)
Q Consensus 90 ~~~~~~~~~~~v~pv~ 105 (524)
+. ..+++++-|.
T Consensus 63 A~----~~gkpIigV~ 74 (111)
T 1eiw_A 63 AR----KSSKPIITVR 74 (111)
T ss_dssp HT----TTTCCEEEEC
T ss_pred HH----HcCCCEEEEE
Confidence 64 3556666663
No 84
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.71 E-value=0.00028 Score=73.41 Aligned_cols=49 Identities=29% Similarity=0.298 Sum_probs=35.3
Q ss_pred ccccchhhhhHHHhhcc----CCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 189 FVGLNSRIEEIKSLLCI----GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+|.+...+.+...+.. .......++|+|++|+||||||+.++......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 67777766666543321 11245689999999999999999999877443
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=2.7e-05 Score=66.24 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....++|+|++|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999987654
No 86
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.66 E-value=0.00024 Score=66.24 Aligned_cols=51 Identities=29% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCCccccchhhhhHHHhhcc----------CCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....++|.+....++.+.... +-.-.+-+.|+|++|+|||||++.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677777666666554321 001123389999999999999999998764
No 87
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.64 E-value=0.00027 Score=70.09 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+.++|++|+|||+||+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998763
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.63 E-value=0.00041 Score=65.63 Aligned_cols=174 Identities=18% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCCCccccchhhhhHHHhhccC----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIG----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
....++|.+...+++.+....- -.-.+-+.|+|++|+|||||++.++..... ..+.+. ........
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~ 113 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 113 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHST
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHH
Confidence 3456788877776666543210 011223899999999999999999987642 122222 11100000
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHH-hcCccEEEecCCCCH----------------HHHHHHhcCCCCCC
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL-QQMKIFIVLDDVNKV----------------RQLEYLTGGLDQFG 317 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 317 (524)
.. ... .....+.+.. ...+.++++||++.. ..+..++..+....
T Consensus 114 ~~--~~~-----------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 114 VG--VGA-----------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp TT--HHH-----------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred hh--HHH-----------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 00 000 0111122222 245689999999422 11223332222111
Q ss_pred --CCcEEEEEeCChhhHHH-h----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 318 --PGSRLIITTRDKQVLDD-F----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 318 --~~~~iliTsR~~~~~~~-~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
....++.+|.....+.. . ... ..+.++..+.++-.+++...+.......+. ....++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFD--RQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSC--CEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCC--eEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 12234445555543221 1 122 578999999998888888765322211111 1345677777765
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.63 E-value=0.00036 Score=76.12 Aligned_cols=154 Identities=23% Similarity=0.282 Sum_probs=86.2
Q ss_pred CCCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 186 FNGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
...++|.+..+++|.+++.. +-.....|.|+|++|+||||||+.++......| +..+........
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhhh
Confidence 46799999999999887753 223456799999999999999999988764332 222111111100
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCCCCCC
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLDQFGP 318 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~ 318 (524)
.+ .... .....+.......+.++++|+++.. ..+-.++..... ..
T Consensus 279 ~g--~~~~----------------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 279 AG--ESES----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp TT--HHHH----------------HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred hh--hHHH----------------HHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 00 0000 1122233333456889999999321 112222222221 12
Q ss_pred CcEEEEEeCChhhHHH-hCC--CCcceEEeCCCCHHHHHHHHHhhhc
Q 009845 319 GSRLIITTRDKQVLDD-FGV--LNTNIYEVNGLEYHEALELFCNFAF 362 (524)
Q Consensus 319 ~~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~~ 362 (524)
...+|.||.....+.. ... .-...+.+...+.++-.+++...+.
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 3455556555422211 111 1114578888899999999887653
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.62 E-value=0.00079 Score=68.79 Aligned_cols=173 Identities=18% Similarity=0.159 Sum_probs=90.7
Q ss_pred CCCCccccchhhhhHHHhhcc---C-------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccC
Q 009845 185 DFNGFVGLNSRIEEIKSLLCI---G-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKG 254 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 254 (524)
....++|.+..+.++.+.... . ..-.+-+.|+|++|+|||+||+.++..... ..+..+........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHhh
Confidence 346688888877777664421 0 011334999999999999999999987642 22222222211110
Q ss_pred cChHHHHHHHHHhhcccccccCCCCchHHHHHHHh----cCccEEEecCCCCH----------------HHHHHHhcCCC
Q 009845 255 GGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ----QMKIFIVLDDVNKV----------------RQLEYLTGGLD 314 (524)
Q Consensus 255 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~----------------~~~~~l~~~~~ 314 (524)
.+ . ....+...++ ..+.++++|+++.. ..+..++..+.
T Consensus 105 ~g--~--------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 VG--V--------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp TT--H--------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred hh--h--------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 00 0 0111111111 24679999999422 12233433322
Q ss_pred CC--CCCcEEEEEeCChhhHHH-hCC--CCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 009845 315 QF--GPGSRLIITTRDKQVLDD-FGV--LNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNP 386 (524)
Q Consensus 315 ~~--~~~~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 386 (524)
.. .....++.+|.....+.. ... .....+.++..+.++-.+++..++.......+. ....++..+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 11 123345555655544321 110 111578899999998888888765332211111 1345677777776
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.52 E-value=0.0023 Score=60.20 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=66.2
Q ss_pred EEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHH-HhcC
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRER-LQQM 291 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~-l~~~ 291 (524)
++|+|++|+||||||+.++...... .+.+. ...... ......... ...+.+. ....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~--~~~~~~~~~-----------------i~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLN--MYVGESERA-----------------VRQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCS--STTHHHHHH-----------------HHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHh--hhhhHHHHH-----------------HHHHHHHHHhcC
Confidence 9999999999999999999875432 22222 111111 011111110 1111121 1345
Q ss_pred ccEEEecCCCCHH-------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHHHh-----CCCCcceEEeCCCCHH
Q 009845 292 KIFIVLDDVNKVR-------------QLEYLTGGLDQF--GPGSRLIITTRDKQVLDDF-----GVLNTNIYEVNGLEYH 351 (524)
Q Consensus 292 ~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~~~~iliTsR~~~~~~~~-----~~~~~~~~~l~~L~~~ 351 (524)
+.++++|+++... ....++..+... ....-++.+|.....+... ..+ ..+.++..+.+
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd--~~i~~~~P~~~ 181 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLD--KTLFVGLPPPA 181 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSC--EEEECCSCCHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCC--eEEEeCCcCHH
Confidence 7889999985421 112222222111 1233455566665443211 223 67889999999
Q ss_pred HHHHHHHhhh
Q 009845 352 EALELFCNFA 361 (524)
Q Consensus 352 ea~~ll~~~~ 361 (524)
+-.+++....
T Consensus 182 ~r~~il~~~~ 191 (274)
T 2x8a_A 182 DRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988766
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.44 E-value=0.00018 Score=78.34 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCccccchhhhhHHHhhccC-------CCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45889999998887766421 1123579999999999999999999877
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.34 E-value=0.00078 Score=74.25 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=38.5
Q ss_pred CccccchhhhhHHHhhccC-------CCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 188 GFVGLNSRIEEIKSLLCIG-------LPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.++|.+..++.+...+... ......+.|+|++|+|||+||+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999888776421 112358999999999999999999987643
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=0.00037 Score=66.95 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=33.3
Q ss_pred hhhhHHHhhccCCC-CceEEEEeccCcchhhHHHHHHhhhhc-ccccceEEE
Q 009845 195 RIEEIKSLLCIGLP-DFRIVGIWGMGGTGKTTLAGAIFNLIS-WEFEGKCFM 244 (524)
Q Consensus 195 ~l~~l~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~ 244 (524)
.++.+.+++....+ ..+.+.|+|++|+|||+||..+++... .......++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34445555553222 246899999999999999999999776 443333333
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.17 E-value=0.0078 Score=52.47 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|.|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999887653
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.0005 Score=62.85 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=31.0
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
.|..++..+-....+++|.|++|+|||||+..++......-....|+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 44444432222356999999999999999999987654432333443
No 97
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.14 E-value=0.00023 Score=69.57 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=67.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEE-EEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCF-MANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
..+++|+|+.|+|||||.+.++..+.......++ +.+..+.... .. ...+...............+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~--~~-------~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE--SK-------KCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC--CS-------SSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh--cc-------ccceeeeeeccccCCHHHHHHHHh
Confidence 3599999999999999999998876544223332 2211111000 00 000001111111124566888999
Q ss_pred hcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 009845 289 QQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQVL 332 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~ 332 (524)
...|=+|++|+..+.+..+.+.... ..|..||+|+......
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999999998877766654432 2466788888876554
No 98
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.13 E-value=0.00049 Score=74.09 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=77.5
Q ss_pred CCccccchhhhhHHHhhcc-----------CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 187 NGFVGLNSRIEEIKSLLCI-----------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
..+.|.+...++|.+.+.. +....+-+.++||+|+|||.||+.+++..... |+. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~---------v 542 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS---------I 542 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE---------C
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE---------e
Confidence 4566788777777765532 11235678899999999999999999986543 222 1
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCHH----------------HHHHHhcCCCCCCC-
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKVR----------------QLEYLTGGLDQFGP- 318 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~- 318 (524)
...+ +++..... ....+...+...-+..+.+|+||+++... .+..|+..+.....
T Consensus 543 ~~~~----l~s~~vGe----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 543 KGPE----LLTMWFGE----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp CHHH----HHTTTCSS----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred ccch----hhccccch----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1111 11110000 00012222333334578999999995321 12334433322222
Q ss_pred -CcEEEEEeCChhhH-HHh----CCCCcceEEeCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCC
Q 009845 319 -GSRLIITTRDKQVL-DDF----GVLNTNIYEVNGLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGN 385 (524)
Q Consensus 319 -~~~iliTsR~~~~~-~~~----~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 385 (524)
+.-||-||.....+ ..+ ..+ ..+.++..+.++-.++|..++.+...... .-...+++.+.|+
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd--~~i~v~lPd~~~R~~il~~~l~~~~~~~~---~dl~~la~~t~g~ 682 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLD--QLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGF 682 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSC--CEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcce--EEEEECCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHhCCCC
Confidence 22233344433221 111 223 67788777777777777766633221111 1134566666665
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.13 E-value=0.0015 Score=60.94 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...+++|+|+.|+|||||++.++..+...+.+.+++....-.... .... .+ +...........+...+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-~~~~----~~---v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK----SI---VNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSS----SE---EEEEEBTTTBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-CCcc----ee---eeHHHhCCCHHHHHHHHHHHH
Confidence 457999999999999999999887665433344444321100000 0000 00 000000111124566777788
Q ss_pred hcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 009845 289 QQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQV 331 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~~ 331 (524)
...+-+|++|+..+.+....++... ..|..|++|+.+...
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 8889999999998766655544322 246678888877653
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.10 E-value=0.0012 Score=59.83 Aligned_cols=35 Identities=31% Similarity=0.261 Sum_probs=26.9
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhh
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.|..++..+-+...++.|.|++|+|||||+..++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44455543334467999999999999999999988
No 101
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.00 E-value=0.0014 Score=63.88 Aligned_cols=51 Identities=29% Similarity=0.194 Sum_probs=37.1
Q ss_pred hhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 195 RIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 195 ~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
-...|...|. .+-+...++.|.|++|+|||||+.+++......-..++|+.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3456666675 44445789999999999999999999987654433445554
No 102
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.97 E-value=0.0099 Score=57.85 Aligned_cols=166 Identities=11% Similarity=-0.051 Sum_probs=99.6
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc-cccceEEEEeeccccccCcChHHHHHHHHHhhcccccccC
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW-EFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIR 276 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 276 (524)
++.+.+. + .-.++..++|+.|.||++.+..+...+.. .|... .+..... . .++..+...+-.
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~---~-~~~~~l~~~~~~---------- 70 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH-HTFSIDP---N-TDWNAIFSLCQA---------- 70 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEE-EEEECCT---T-CCHHHHHHHHHH----------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCee-EEEEecC---C-CCHHHHHHHhcC----------
Confidence 4444454 2 24679999999999999999999886543 23211 1111111 1 334333333211
Q ss_pred CCCchHHHHHHHhcCccEEEecCCCC-H--HHHHHHhcCCCCCCCCcEEEEEeCC-------hhhHHHhCCCCcceEEeC
Q 009845 277 TPDLPKYMRERLQQMKIFIVLDDVNK-V--RQLEYLTGGLDQFGPGSRLIITTRD-------KQVLDDFGVLNTNIYEVN 346 (524)
Q Consensus 277 ~~~~~~~l~~~l~~~~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~iliTsR~-------~~~~~~~~~~~~~~~~l~ 346 (524)
.-+-+++-++|+|+++. . ...+.+...+....+++.+|+++.. ..+...... .+..++..
T Consensus 71 ---------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~ 140 (343)
T 1jr3_D 71 ---------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQ 140 (343)
T ss_dssp ---------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEEC
T ss_pred ---------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEee
Confidence 11234566889999865 2 3445555444433456777666543 233433322 23789999
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 009845 347 GLEYHEALELFCNFAFKHDYCLDDLLVLLEHVVKYANGNPLALRVL 392 (524)
Q Consensus 347 ~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 392 (524)
+++.++..+++.+.+...+. ....+.+..+++.++|....+...
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHH
Confidence 99999999998887744331 233467888999999999877653
No 103
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.94 E-value=0.0042 Score=52.81 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=70.8
Q ss_pred ccCcccccHHHHHHHHHhhCCCcEEecCCcCC----C----CCcchHHHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 009845 19 RGEDTRDNFTSRLHAALCRKKINTFIDDEELR----R----GDCISPAIFDAIQGSKISVIILSKDYASSKWCLNELVKI 90 (524)
Q Consensus 19 ~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~----~----g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~ 90 (524)
+.+| ..+...|...-....+-.|.|.++.. - -+.|...+.+.|..|+.+|+++|++...|.|...|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 5556 54577777777777776678876552 2 345788888999999999999999999999999999887
Q ss_pred HHhHhhCCCeeeeeeeecC-CcccccccCcchh
Q 009845 91 LECKSMNGQMVVPVFYHVD-PSDVRKQNGTFGD 122 (524)
Q Consensus 91 ~~~~~~~~~~v~pv~~~~~-~~~~r~~~~~~~~ 122 (524)
+ ...+.+||-|..+-+ .+++.+..|++..
T Consensus 105 i---~~~~~PII~Vy~~~~~~~~i~~~~g~~~~ 134 (189)
T 3hyn_A 105 I---GTKGLPVIVIYPDYDKKSDIVDSNGNFKK 134 (189)
T ss_dssp T---TTTCCCEEEEETTCCSGGGTBCTTSCBCH
T ss_pred H---HhcCCcEEEEECCccccchhhhccccchh
Confidence 6 234577888766533 3344444455443
No 104
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.90 E-value=0.00083 Score=59.12 Aligned_cols=115 Identities=17% Similarity=0.062 Sum_probs=57.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh---hcccc-cccCC-----C---
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE---VLDEN-IKIRT-----P--- 278 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---l~~~~-~~~~~-----~--- 278 (524)
..|.|++..|.||||+|...+-+...+-..+.++.-.... ...+...++..+.-. ++..- ..... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~--~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT--WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS--SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC--CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4666777777999999999888766553334444322211 112223333333100 00000 00000 0
Q ss_pred CchHHHHHHHhcCc-cEEEecCCCC--------HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 279 DLPKYMRERLQQMK-IFIVLDDVNK--------VRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 279 ~~~~~l~~~l~~~~-~LlVlDdv~~--------~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
......++.+...+ =|||||++.. .+.+-.++.. ......||+|+|+..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCc
Confidence 12233334444444 4999999832 2333333322 246778999999873
No 105
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.89 E-value=0.0017 Score=61.81 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999886
No 106
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.87 E-value=0.018 Score=54.81 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=28.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...+++|+|++|+||||++..++..+... ...+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 46799999999999999999999877654 2334443
No 107
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.86 E-value=0.00061 Score=66.18 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=38.6
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++|++..++.+...+..+ ..+.++|++|+|||+||+.+++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46899999999988877643 36889999999999999999987643
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.82 E-value=0.00099 Score=60.36 Aligned_cols=109 Identities=17% Similarity=-0.008 Sum_probs=57.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
...++.|+|++|+||||++..++++...+.....++....... ...++++.++........ .....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r--------~~~~i~srlG~~~~~~~~-~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR--------SIRNIQSRTGTSLPSVEV-ESAPEILNYI 81 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG--------GCSSCCCCCCCSSCCEEE-SSTHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch--------HHHHHHHhcCCCcccccc-CCHHHHHHHH
Confidence 3579999999999999999999988765533333332111100 001222223322111111 1112233333
Q ss_pred hc-----CccEEEecCCCC--HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 289 QQ-----MKIFIVLDDVNK--VRQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 289 ~~-----~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
.. +.-+||+|.+.. .++++.+.. +. ..+..||+|.+..
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDK 126 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSB
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEeccc
Confidence 32 345999999943 234333322 11 1267899999853
No 109
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.72 E-value=0.0074 Score=58.24 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=37.2
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..|...-+..|..++. +-....++.|.|.+|+||||||..++......-..+.|+.
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3344444555555553 3344579999999999999999999887654333344443
No 110
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.69 E-value=0.026 Score=55.47 Aligned_cols=49 Identities=35% Similarity=0.268 Sum_probs=36.5
Q ss_pred CCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 186 FNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 186 ~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...++|....+.++...+..-......|.|+|.+|+||+++|+.+...-
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 3568999888888877664322233457899999999999999876643
No 111
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.68 E-value=0.0065 Score=59.17 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=29.6
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..|..+|..+-+...++.|+|++|+|||+||.+++...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555665444557899999999999999999998763
No 112
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.038 Score=55.21 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+|.++|++|+||||++..++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998876654
No 113
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.65 E-value=0.022 Score=53.99 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+++++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999877654
No 114
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.64 E-value=0.0012 Score=64.96 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=35.0
Q ss_pred ccccchhhhhHHHhhc-------------cCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 189 FVGLNSRIEEIKSLLC-------------IGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++|.+..++.+...+. ......+.+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6777777777766652 1111346789999999999999999998763
No 115
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.62 E-value=0.0012 Score=65.10 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=63.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERL 288 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l 288 (524)
....++|+|+.|+|||||++.++..+.......+.+.... . . ... .....-+.....+.........+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~-e--~~~----~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I-E--YVF----KHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-C-C--SCC----CCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-H-h--hhh----ccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 4568999999999999999999887654323344332110 0 0 000 000000000000111124566788888
Q ss_pred hcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 289 QQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 289 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
...+-+|++|+..+.+.+...+... ..|..|+.|+....
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 8889999999998777665544332 24556777776654
No 116
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.59 E-value=0.031 Score=53.04 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987763
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.59 E-value=0.014 Score=57.22 Aligned_cols=53 Identities=30% Similarity=0.265 Sum_probs=37.4
Q ss_pred chhhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 193 NSRIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 193 ~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..-+..|..+|. .+-+...++.|.|++|+||||||.+++......-..++|+.
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 344556666665 33344679999999999999999999887654434455655
No 118
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.58 E-value=0.0034 Score=59.48 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=32.9
Q ss_pred hhHHHhhc----cCCCCceEEEEeccCcchhhHHHHHHhhhhcccc--cceEEEE
Q 009845 197 EEIKSLLC----IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF--EGKCFMA 245 (524)
Q Consensus 197 ~~l~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 245 (524)
.+|...|. .+-+.. ++.|.|++|+|||||+.+++......+ ...+|++
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34555565 333334 789999999999999999988766542 3345554
No 119
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.56 E-value=0.002 Score=65.88 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=37.5
Q ss_pred CccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 188 GFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 5899999998888776533 4789999999999999999998764
No 120
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.55 E-value=0.0011 Score=57.73 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=22.7
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998764
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.51 E-value=0.0027 Score=56.64 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=32.1
Q ss_pred cchhhhhHHHhhccC-CCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 192 LNSRIEEIKSLLCIG-LPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 192 R~~~l~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
|+..++.|.+.+... .....+++|.|++|+|||||++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444556666555432 23467999999999999999999987654
No 122
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.50 E-value=0.057 Score=54.08 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++|.|+|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887665
No 123
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.50 E-value=0.00088 Score=73.06 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCccccchhhhhHHHhhccC-----------CCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCc
Q 009845 187 NGFVGLNSRIEEIKSLLCIG-----------LPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGG 255 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 255 (524)
..++|.+...+.|...+... ....+.+.++|++|+|||+||+.++......|- ..+.......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i----~v~~~~l~~~-- 550 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI----SIKGPELLTM-- 550 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC----CCCCSSSTTC--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE----EEechHhhhh--
Confidence 56778888888888766421 123457899999999999999999987643321 1111111000
Q ss_pred ChHHHHHHHHHhhcccccccCCCCchHHHHHHHhcCccEEEecCCCCH----------------HHHHHHhcCCCCCC--
Q 009845 256 GLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQQMKIFIVLDDVNKV----------------RQLEYLTGGLDQFG-- 317 (524)
Q Consensus 256 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~-- 317 (524)
............+...-...+.+|+||+++.. ..+..++..+....
T Consensus 551 ----------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 551 ----------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ----------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred ----------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 00000001112222222345679999998532 12355665554322
Q ss_pred CCcEEEEEeCChhhHHH-hCC--CCcceEEeCCCCHHHHHHHHHhhh
Q 009845 318 PGSRLIITTRDKQVLDD-FGV--LNTNIYEVNGLEYHEALELFCNFA 361 (524)
Q Consensus 318 ~~~~iliTsR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~ 361 (524)
.+..||.||.....+.. ... .-...+.++..+.++-.+++..++
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 23344555544322211 100 001467788888888888888776
No 124
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.44 E-value=0.0014 Score=64.06 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=36.3
Q ss_pred CCCCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 183 SSDFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 183 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+.....++|.+...+.+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 334567999988666554433322 123499999999999999999998654
No 125
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.43 E-value=0.0045 Score=59.79 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=29.1
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..|..+|..+-+...++.|+|++|+|||+||.+++....
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 345555543333467999999999999999999987643
No 126
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.41 E-value=0.0012 Score=58.04 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=23.5
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
|.|+|+||+|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999987755443
No 127
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.41 E-value=0.0023 Score=57.43 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=24.6
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+...+++|.|++|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999988765
No 128
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.38 E-value=0.0078 Score=57.83 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=28.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..++++|+|++|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46799999999999999999999877654 3334443
No 129
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.36 E-value=0.0055 Score=58.92 Aligned_cols=54 Identities=20% Similarity=0.107 Sum_probs=36.9
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
|...-+..|..++ .+-....++.|.|.+|+||||||.+++.....+...++|+.
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3344445555555 34445679999999999999999999876554434445554
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.36 E-value=0.043 Score=52.79 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=25.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+++|+|+.|+|||||++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999998866543
No 131
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.31 E-value=0.0019 Score=55.79 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+|+|.|++|+||||+++.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988754
No 132
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.31 E-value=0.0027 Score=56.11 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=31.6
Q ss_pred hhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 194 SRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 194 ~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.-+..|..++.. -+....+.|+|+||+|||++|..+++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346667777753 333457999999999999999999887643
No 133
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.18 E-value=0.024 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|+|||||++.++....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356999999999999999999987544
No 134
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.16 E-value=0.0026 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+.|+|+|++|+||||+|+.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988753
No 135
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.16 E-value=0.033 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|+|||||.+.++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999987554
No 136
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.15 E-value=0.017 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||.+.++--+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999988654
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.0032 Score=57.99 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=32.0
Q ss_pred HHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 199 IKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 199 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
|...|..+-....++.|.|++|+|||||+.+++......-...+|+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44444433334569999999999999999998876554433445544
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.0029 Score=56.40 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...|+|.|++|+||||+++.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 139
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0048 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+|.|.|+||+||||.|..+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998864
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.12 E-value=0.0028 Score=61.32 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=60.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhcccccccCCCCchHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKIRTPDLPKYMRERLQ 289 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~l~~~l~ 289 (524)
...++|+|+.|+|||||++.++..+... .+.+.+.+..+.... ... .....-. . ........+...+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~--~~~-------~~i~~~~-g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK--HHK-------NYTQLFF-G-GNITSADCLKSCLR 238 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS--SCS-------SEEEEEC-B-TTBCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc--cch-------hEEEEEe-C-CChhHHHHHHHHhh
Confidence 3489999999999999999998866542 445555433211100 000 0000000 0 12245667778888
Q ss_pred cCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 009845 290 QMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDKQ 330 (524)
Q Consensus 290 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~~ 330 (524)
.++-+|++|+..+.+..+.+. .+. ..+..+|+|+....
T Consensus 239 ~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcccH
Confidence 899999999997755444332 221 11223566665543
No 141
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.11 E-value=0.0029 Score=55.35 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987654
No 142
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.10 E-value=0.015 Score=57.97 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=25.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+++.++|++|+||||++..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999876654
No 143
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.10 E-value=0.0048 Score=58.45 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=25.0
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+...+|+|.|++|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34679999999999999999998887654
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.09 E-value=0.0031 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.6
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 145
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.09 E-value=0.0095 Score=59.77 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=27.6
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccccceEEEEee
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANV 247 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 247 (524)
+.++|+|++|+|||||+..++.....++...+.+..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~i 188 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGV 188 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeee
Confidence 3688999999999999999998766555444433333
No 146
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.08 E-value=0.026 Score=57.23 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=23.9
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
+.+.|.|++|+|||+++..++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999988765543
No 147
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.07 E-value=0.0048 Score=54.92 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|+|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998775
No 148
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.06 E-value=0.0046 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..|+|.|++|+||||+++.+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987653
No 149
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0054 Score=56.54 Aligned_cols=36 Identities=33% Similarity=0.343 Sum_probs=26.9
Q ss_pred HHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 200 KSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 200 ~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|..+-+...++.|.|.+|+|||+||.+++....
T Consensus 20 D~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344543333467999999999999999999876543
No 150
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.03 E-value=0.0031 Score=54.52 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.7
Q ss_pred eEEEEeccCcchhhHHHHHH
Q 009845 211 RIVGIWGMGGTGKTTLAGAI 230 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~ 230 (524)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 151
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.02 E-value=0.014 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=18.7
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
+..|+|++|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7789999999999999886443
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.01 E-value=0.0036 Score=55.15 Aligned_cols=25 Identities=40% Similarity=0.491 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999875
No 153
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.98 E-value=0.0042 Score=54.78 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998865
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.96 E-value=0.003 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988654
No 155
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.0067 Score=53.22 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+|+|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987654
No 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.95 E-value=0.0046 Score=56.99 Aligned_cols=26 Identities=19% Similarity=0.009 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....|+|.|++|+||||+|+.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 157
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.95 E-value=0.032 Score=51.91 Aligned_cols=25 Identities=48% Similarity=0.473 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|.|+.|+|||||.+.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 158
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.94 E-value=0.0037 Score=56.10 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+++|+|++|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4579999999999999999999887643
No 159
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.94 E-value=0.0028 Score=61.67 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=25.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFE 239 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 239 (524)
..+.++|+|++|+|||||++.+++.+...++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~ 203 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 203 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCC
Confidence 3568999999999999999999887655443
No 160
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.93 E-value=0.043 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|+|||||.+.++....
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456999999999999999999887543
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.92 E-value=0.0039 Score=54.80 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=23.8
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
++++|.|+.|+|||||++.+...+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999988765444
No 162
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.91 E-value=0.064 Score=54.26 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=35.9
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccccc-ceEEEE
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFE-GKCFMA 245 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 245 (524)
|...-+..|...+ .+-....++.|.|.+|+|||||+..++........ .++|+.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3333344555555 23345679999999999999999999987664322 344443
No 163
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.86 E-value=0.006 Score=54.31 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35699999999999999999998765
No 164
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.85 E-value=0.0038 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+.|+|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 165
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.85 E-value=0.0042 Score=54.64 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.7
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..|+|.|++|+||||+++.++..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 166
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.84 E-value=0.0047 Score=57.34 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++++|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988653
No 167
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.83 E-value=0.04 Score=55.62 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=28.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...+++|+|+.|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999998876543 3445543
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.82 E-value=0.0061 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999988764
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.79 E-value=0.0049 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+.|+|.|++|+||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 170
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.78 E-value=0.0071 Score=55.48 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=28.2
Q ss_pred hhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 197 EEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 197 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..|..+|..+-+...++.|.|++|+|||||+..++..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3455555433334679999999999999999999875
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.77 E-value=0.0059 Score=59.47 Aligned_cols=51 Identities=25% Similarity=0.223 Sum_probs=36.4
Q ss_pred hhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 195 RIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 195 ~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
-+..|..+|. .+-+..+++.|.|++|+||||||.+++......-...+|+.
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3445666665 44445679999999999999999999876654434455554
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.77 E-value=0.0081 Score=54.55 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=27.5
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|...|..+-....+++|.|++|+|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444453333346799999999999999999998743
No 173
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.76 E-value=0.031 Score=57.42 Aligned_cols=47 Identities=9% Similarity=-0.115 Sum_probs=33.1
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc-ccceEEEE
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE-FEGKCFMA 245 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 245 (524)
.|..++. +-....++.|.|.+|+|||+||.+++...... -..++|+.
T Consensus 231 ~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 231 GINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp THHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred hhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 3334443 44456799999999999999999999877654 23445554
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.75 E-value=0.0063 Score=59.40 Aligned_cols=52 Identities=31% Similarity=0.317 Sum_probs=36.9
Q ss_pred hhhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 194 SRIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 194 ~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
.-...|..+|. .+-+..+++.|.|++|+||||||.+++......-..++|+.
T Consensus 46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33445556665 34345679999999999999999999887654434455655
No 175
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.74 E-value=0.0079 Score=56.91 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...++.|.|++|+||||+|+.++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.74 E-value=0.027 Score=56.84 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=43.5
Q ss_pred cccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccc-cceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 190 VGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEF-EGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 190 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
.|...-+..|..++ .+-....++.|.|.+|+|||+||.+++....... ..++|+. .. .+...+...++..
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-lE------~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-LE------MPAAQLTLRMMCS 251 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-SS------SCHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-CC------CCHHHHHHHHHHH
Confidence 34444445565666 3444567999999999999999999998765432 2344443 21 3344566665543
No 177
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.74 E-value=0.025 Score=56.03 Aligned_cols=47 Identities=26% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..++|....++++.+.+..-.+....|.|+|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 46888888888888776543333345699999999999999887664
No 178
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.73 E-value=0.0038 Score=55.67 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 179
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.72 E-value=0.0057 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+|+|.|++|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 180
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.70 E-value=0.01 Score=56.89 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=33.4
Q ss_pred ccccchhhhhHHHhhccC--CCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 189 FVGLNSRIEEIKSLLCIG--LPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++|-...+..+...+... .....+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555566555444322 23467999999999999999999877654
No 181
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.70 E-value=0.0051 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.6
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|+|.|++|+||||+|+.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988754
No 182
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.67 E-value=0.0044 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++++|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999988763
No 183
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.67 E-value=0.038 Score=57.62 Aligned_cols=28 Identities=36% Similarity=0.383 Sum_probs=23.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+++.|+|++|+||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999998866544
No 184
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.66 E-value=0.0045 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+|+|+|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988653
No 185
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.65 E-value=0.0062 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999988764
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.65 E-value=0.0061 Score=53.94 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 187
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.64 E-value=0.0047 Score=53.92 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=18.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 188
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.61 E-value=0.007 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.59 E-value=0.0064 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999988764
No 190
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.59 E-value=0.0067 Score=53.20 Aligned_cols=24 Identities=38% Similarity=0.257 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 191
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.0071 Score=54.16 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|+|.|++|+||||+|+.++..+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999999999876543
No 192
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.59 E-value=0.0077 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998764
No 193
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.58 E-value=0.0063 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988753
No 194
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.57 E-value=0.0065 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 195
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.56 E-value=0.0093 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.++++|.|++|+|||||+..+...+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999999877644
No 196
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.56 E-value=0.0071 Score=56.05 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|+|.|++|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999988654
No 197
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.56 E-value=0.0054 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988653
No 198
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.55 E-value=0.007 Score=54.76 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999988653
No 199
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.54 E-value=0.17 Score=51.56 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++|.|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 36789999999999999999999876544
No 200
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.50 E-value=0.0092 Score=53.57 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=24.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+|+|.|++|+||||+++.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 201
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.49 E-value=0.0082 Score=54.04 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...++|.|.|+||+||||.|..+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998864
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.49 E-value=0.0073 Score=55.64 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998843
No 203
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.48 E-value=0.0088 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 204
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.46 E-value=0.0074 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.0
Q ss_pred CceEEEEeccCcchhhHHHHHHh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~ 231 (524)
...+++|.|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35699999999999999999754
No 205
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.45 E-value=0.0077 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|.|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 206
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.45 E-value=0.018 Score=58.11 Aligned_cols=53 Identities=21% Similarity=0.103 Sum_probs=36.3
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
|...-+..|..++. +-....++.|.|.||+||||||.+++.....+-..++|+
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 44444455555553 444567999999999999999999998765542334444
No 207
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.44 E-value=0.0083 Score=52.74 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 208
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.43 E-value=0.0087 Score=59.88 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=33.4
Q ss_pred CccccchhhhhHHHhhcc------------CCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 188 GFVGLNSRIEEIKSLLCI------------GLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 188 ~~vGR~~~l~~l~~~L~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.++|-+...+.|...+.. .....+-+.++|++|+|||++|+.++..+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456666666666544411 0112356899999999999999999987644
No 209
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.42 E-value=0.0088 Score=53.63 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999888654
No 210
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.38 E-value=0.013 Score=54.28 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=30.0
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..-+..|+....+....+.++||||+|||.||..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 345677776432445679999999999999999998853
No 211
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.38 E-value=0.0084 Score=52.71 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 212
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.38 E-value=0.0072 Score=63.72 Aligned_cols=49 Identities=31% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCCccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 185 DFNGFVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 185 ~~~~~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3456899999998888877643 479999999999999999999876544
No 213
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.36 E-value=0.0087 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 214
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.35 E-value=0.0084 Score=53.71 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=23.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..+|+|.|++|+||||+++.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 215
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.34 E-value=0.01 Score=53.00 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+|+|+|++|+|||||++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988754
No 216
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.29 E-value=0.0081 Score=58.00 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
....+.|.|++|+||||+++.++..+...|
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 356799999999999999999988765444
No 217
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.29 E-value=0.0095 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988754
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.29 E-value=0.0087 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.7
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 219
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.27 E-value=0.011 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....|+|+|++|+||||+++.+...+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988764
No 220
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.26 E-value=0.022 Score=55.72 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=29.4
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
++...+....+...+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3343343334467899999999999999999998776443
No 221
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.25 E-value=0.01 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+|+|+|++|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
No 222
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.25 E-value=0.0093 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.24 E-value=0.014 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...++.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988653
No 224
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.21 E-value=0.0097 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 225
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.20 E-value=0.061 Score=53.81 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=37.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
..+.++|.|.+|+|||+|+.++++.+.......+.+..+.+.. ....++.+.+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~---rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT---REGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCH---HHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcc---hHHHHHHHHhhhc
Confidence 3468999999999999999999987654433333333344332 3456666666554
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.18 E-value=0.0077 Score=53.53 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+.++|+|++|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45799999999999999999887543
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.16 E-value=0.011 Score=53.41 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+++|.|+.|+|||||.+.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356999999999999999999988665
No 228
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.14 E-value=0.011 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|.|++|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.13 E-value=0.011 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.2
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.|+|.|++|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999887643
No 230
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.13 E-value=0.0096 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.073 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988754
No 231
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.12 E-value=0.01 Score=52.91 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEeccCcchhhHHHHHHhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.|+|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.12 E-value=0.012 Score=56.39 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|+|.||.|+|||||+..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998754
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.11 E-value=0.023 Score=66.72 Aligned_cols=48 Identities=33% Similarity=0.371 Sum_probs=35.2
Q ss_pred hHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 198 EIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 198 ~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
.|..+|. .+-+..+.+.|+|++|+|||+||.+++.....+-....|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555554 33345679999999999999999999887665544555665
No 234
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.10 E-value=0.0088 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.2
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887643
No 235
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.10 E-value=0.011 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|+|+|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 236
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.09 E-value=0.011 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 237
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.09 E-value=0.047 Score=48.65 Aligned_cols=36 Identities=14% Similarity=-0.057 Sum_probs=27.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
...+.+++|+.|.||||.+...+++....-..++++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 357999999999999999999988765543333333
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.08 E-value=0.016 Score=55.14 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=27.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...+++|+|++|+|||||++.++..+... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35799999999999999999998766543 3334443
No 239
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.08 E-value=0.01 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998865
No 240
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.08 E-value=0.011 Score=52.63 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.+|+|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 241
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.07 E-value=0.019 Score=55.86 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=28.8
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|..+|..+-+...++.|+|++|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554344457899999999999999999998765
No 242
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.06 E-value=0.013 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.042 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999998864
No 243
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.06 E-value=0.017 Score=55.32 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
++.++|+|+|-||+||||.+..++.-+...-..+..+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3578999999999999999999988776553333333
No 244
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.04 E-value=0.021 Score=54.14 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+++|.|++|+|||||+..++..+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 45699999999999999999998876544
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.99 E-value=0.014 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.++|+|.||+|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998865
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.98 E-value=0.011 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.8
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..|+|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.96 E-value=0.015 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++++|.||+|+||||||..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998874
No 248
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.95 E-value=0.015 Score=52.13 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999988765
No 249
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.94 E-value=0.043 Score=53.35 Aligned_cols=30 Identities=27% Similarity=0.036 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEF 238 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 238 (524)
..+.++|.|++|+|||+|+.++++.+..++
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 356789999999999999999998766543
No 250
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.94 E-value=0.014 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|+|.|++|+|||||++.++..+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997654
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.93 E-value=0.062 Score=53.49 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE-eeccccccCcChHHHHHHHHHhhcccccccCC-CCchHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA-NVREESEKGGGLVHLREQVLSEVLDENIKIRT-PDLPKYMRE 286 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-~~~~~~l~~ 286 (524)
...+++|+|+.|+|||||.+.++..+... ...+++. +--+... .. .......... ......++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~--~~-----------~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDI--DG-----------IGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCC--SS-----------SEEEECBGGGTBCHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhcc--CC-----------cceEEEccccCcCHHHHHHH
Confidence 45699999999999999999998876544 3333332 1111000 00 0000000001 134566777
Q ss_pred HHhcCccEEEecCCCCHHHHHH
Q 009845 287 RLQQMKIFIVLDDVNKVRQLEY 308 (524)
Q Consensus 287 ~l~~~~~LlVlDdv~~~~~~~~ 308 (524)
.++..+-++++.++.+......
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~ 253 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQI 253 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHH
T ss_pred HhccCCCeEEEcCcCCHHHHHH
Confidence 8888888999999877655443
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.92 E-value=0.013 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||++.++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35699999999999999999988765
No 253
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.91 E-value=0.025 Score=56.88 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=37.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
..+.++|.|.+|+|||+|+.++++.+.......+.+..+.+.. ....++.+.+...
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~---rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERT---REGNDLYMEMKES 219 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCS---HHHHHHHHHHHHT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCc---HHHHHHHHhhhcc
Confidence 3567899999999999999999998654433344343444433 3466667666653
No 254
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.90 E-value=0.034 Score=55.71 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.++|.|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877654
No 255
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.89 E-value=0.22 Score=46.66 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=25.0
Q ss_pred chHHHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 009845 55 ISPAIFDAIQGSKISVIILSKDYASSKWCLNELVKI 90 (524)
Q Consensus 55 ~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~ 90 (524)
....+.+.++++++.|.|++-.-..+..+ .++...
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~ 47 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDI 47 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHH
Confidence 45678889999999999998765555544 234443
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.86 E-value=0.011 Score=53.34 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|+|+.|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999988755
No 257
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.86 E-value=0.015 Score=51.30 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998763
No 258
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.84 E-value=0.016 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999988754
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.84 E-value=0.015 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988754
No 260
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.80 E-value=0.015 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++|+|+|++|+||||||..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998753
No 261
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.78 E-value=0.011 Score=56.08 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|+|+|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.78 E-value=0.022 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.7
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.++.|+|++|+||||++.+++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999988877654
No 263
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.78 E-value=0.016 Score=55.39 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....+++|.|+.|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999887654
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.78 E-value=0.018 Score=49.00 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45699999999999999999998865
No 265
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.73 E-value=0.13 Score=54.03 Aligned_cols=26 Identities=38% Similarity=0.392 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
.+.+.|+|++|+||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988876554
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.72 E-value=0.017 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.71 E-value=0.014 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998654
No 268
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.66 E-value=0.031 Score=50.28 Aligned_cols=27 Identities=19% Similarity=-0.066 Sum_probs=23.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
-.|.+.|.||+||||+|..++......
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 358899999999999999999887654
No 269
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.64 E-value=0.029 Score=53.96 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=29.0
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...|..+|..+-+...++.|+|++|+|||+||.+++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455556433345689999999999999999999875
No 270
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.59 E-value=0.019 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+|+|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.58 E-value=0.055 Score=62.83 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=37.9
Q ss_pred ccchhhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 191 GLNSRIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 191 GR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
+...-..+|..+|. .+-....++.|.|++|+||||||.+++......-....|+.
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33344456666664 33345679999999999999999999987665433344544
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.58 E-value=0.018 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 273
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.56 E-value=0.018 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.55 E-value=0.026 Score=53.72 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+++|+|+.|+|||||++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999886554
No 275
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.54 E-value=0.021 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|+|.|++|+||||+|+.+++.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.54 E-value=0.099 Score=52.02 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...++.|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999876654
No 277
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.49 E-value=0.038 Score=49.83 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
....|+|.|.+|+|||||+..++......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 45788999999999999999998765433
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.49 E-value=0.022 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 279
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.48 E-value=0.021 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.46 E-value=0.014 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=16.6
Q ss_pred ceEEEEeccCcchhhHHHHHHh-hhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIF-NLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 234 (524)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 643
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.43 E-value=0.028 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.++++|+|++|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999887643
No 282
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.43 E-value=0.018 Score=57.02 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=28.1
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhh
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
+..|..+|..+-....++.|.|++|+|||||+..++-
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4455566654434467999999999999999998764
No 283
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.41 E-value=0.17 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCceEEEEeccCcchhhHHHHHHhh
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
...++..|.|++|.||||+..+.+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999998875
No 284
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.026 Score=50.76 Aligned_cols=41 Identities=29% Similarity=0.229 Sum_probs=29.4
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..+.+...+.. ...+.++|+|.+|+|||||+..+.......
T Consensus 17 ~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444444432 246789999999999999999998875444
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.016 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
++++|+|++|+|||||+..+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 479999999999999999998876543
No 286
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.35 E-value=0.038 Score=52.76 Aligned_cols=28 Identities=32% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....+++|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999887654
No 287
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.30 E-value=0.024 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+|.|+|++|+||||+|+.++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.25 E-value=0.03 Score=54.92 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 207 LPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 207 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
-+....++|+|++|+|||||++.++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456799999999999999999998754
No 289
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.25 E-value=0.029 Score=51.21 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4569999999999999999998763
No 290
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.17 E-value=0.025 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.+|.|.|++|+||||+|+.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 291
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.17 E-value=0.036 Score=56.57 Aligned_cols=48 Identities=4% Similarity=-0.112 Sum_probs=33.9
Q ss_pred ccccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 189 FVGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...|.+..+.+.+......+...+|.+.|++|+||||+|+.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344444455555554222234578999999999999999999998764
No 292
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.16 E-value=0.03 Score=50.89 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999988765
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.12 E-value=0.021 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhc
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999987654
No 294
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.10 E-value=0.036 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+++|+|+.|+|||||++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4679999999999999999999886654
No 295
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.04 E-value=0.23 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....++|+|+.|+|||||++.++.-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 296
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.02 E-value=0.049 Score=50.46 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..++++.|.||+|||||+..++..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999997766
No 297
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.99 E-value=0.03 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++|+|.|++|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999988753
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.99 E-value=0.038 Score=51.92 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...++.|.|++|+|||||+..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356999999999999999999987544
No 299
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.88 E-value=0.19 Score=51.86 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||.+.++-.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46799999999999999999987643
No 300
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.85 E-value=0.036 Score=50.20 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 301
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.84 E-value=0.04 Score=50.75 Aligned_cols=27 Identities=30% Similarity=0.360 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
..+++|.|+.|+|||||.+.++--...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 458999999999999999998875543
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.84 E-value=0.12 Score=60.98 Aligned_cols=57 Identities=28% Similarity=0.294 Sum_probs=41.1
Q ss_pred ccccchhhhhHHHhhc-cCCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 189 FVGLNSRIEEIKSLLC-IGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 189 ~vGR~~~l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..+...-...|..+|. .+-+...++.|+|++|+||||||.+++......-...+|+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555667777775 34445679999999999999999999987765434455554
No 303
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.83 E-value=0.046 Score=52.10 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++|+|+|-||+||||+|..++..+...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 46788888999999999999999887665
No 304
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.80 E-value=0.04 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||.+.++--.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987643
No 305
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.78 E-value=0.48 Score=43.03 Aligned_cols=40 Identities=23% Similarity=0.050 Sum_probs=28.3
Q ss_pred cccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 190 VGLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 190 vGR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
-=|+.+.+.+..++.. . -+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~----~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD----K-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT----S-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC----C-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3355555556665542 1 38899999999999999887765
No 306
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.74 E-value=0.029 Score=50.16 Aligned_cols=24 Identities=42% Similarity=0.196 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..+++|.|+.|+|||||++.++-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999998765
No 307
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.71 E-value=0.051 Score=51.46 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=27.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...+++|+|++|+||||++..++..+... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 45789999999999999999999877654 3344444
No 308
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.70 E-value=0.05 Score=50.65 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.5
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 477889999999999999999887655
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.69 E-value=0.05 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999998763
No 310
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.68 E-value=0.042 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+++|.|+.|+|||||.+.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999987643
No 311
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.67 E-value=0.043 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||++.++--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999987643
No 312
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.63 E-value=0.043 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.183 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.+.|.|.|++|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999999874
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.63 E-value=0.034 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+....++|+|++|+|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999988754
No 314
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.59 E-value=0.042 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+|+|.|++|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 315
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.55 E-value=0.12 Score=46.36 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=24.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|+|.|+.|+||||++..+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999887654
No 316
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.55 E-value=0.11 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+++|.|++|+|||||.+.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 589999999999999999987643
No 317
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.51 E-value=0.041 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...|+|.|+.|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 318
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.49 E-value=0.082 Score=51.24 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....+++|.|++|+|||||+..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999876543
No 319
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.47 E-value=0.052 Score=56.06 Aligned_cols=28 Identities=32% Similarity=0.255 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+++|.|++|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3578999999999999999999988754
No 320
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.47 E-value=0.087 Score=50.91 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....+++|.|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3567999999999999999999986544
No 321
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.45 E-value=0.046 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3569999999999999999998763
No 322
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.45 E-value=0.04 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||++.++.-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35699999999999999999987644
No 323
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.43 E-value=0.046 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..+++|.|+.|+|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998763
No 324
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.43 E-value=0.094 Score=46.36 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=25.3
Q ss_pred eEEEEe-ccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 211 RIVGIW-GMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 211 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
++|+|+ +-||+||||+|..++..+...-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 466666 78999999999999988776433334443
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.41 E-value=0.051 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999998764
No 326
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.37 E-value=0.05 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998764
No 327
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.37 E-value=0.042 Score=49.29 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+++|.|+.|+|||||++.++--.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987643
No 328
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.36 E-value=0.043 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999998774
No 329
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.35 E-value=0.036 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 330
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.33 E-value=0.051 Score=49.99 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 331
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.33 E-value=0.054 Score=50.11 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999998764
No 332
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.32 E-value=0.052 Score=49.73 Aligned_cols=25 Identities=44% Similarity=0.508 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998763
No 333
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.32 E-value=0.063 Score=51.61 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=27.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
.+++...|-||+||||+|..++..+...-..+..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 67888999999999999999998877653333333
No 334
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.29 E-value=0.031 Score=58.62 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCccccchhhhhHHHhhccCCC---------CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 187 NGFVGLNSRIEEIKSLLCIGLP---------DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 187 ~~~vGR~~~l~~l~~~L~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+.++|.+...+.+...+..+.. +...|.++|++|+|||+||+.+++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence 4688998877666555543310 011589999999999999999887653
No 335
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.27 E-value=0.22 Score=54.75 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=62.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh-hccccc-----ceEEEEe-eccccccCcCh-----------HHHHHHHHHhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL-ISWEFE-----GKCFMAN-VREESEKGGGL-----------VHLREQVLSEVLD 270 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~f~-----~~~~~~~-~~~~~~~~~~~-----------~~l~~~l~~~l~~ 270 (524)
...+++|.|+.|+|||||++.++.- +. .++ ...++.. ....... .+. ..-...++..++.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~~~~~~~~~~~v~q~~~~~~~~-ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVD-GFPTQEECRTVYVEHDIDGTHSD-TSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCST-TCCCTTTSCEEETTCCCCCCCTT-SBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCccccceeEEEEcccccccccC-CcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 3468999999999999999999831 10 010 1112110 0000000 111 1223344444443
Q ss_pred cc----cccCCC----CchHHHHHHHhcCccEEEecCCC---CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHHHh
Q 009845 271 EN----IKIRTP----DLPKYMRERLQQMKIFIVLDDVN---KVRQLEYLTGGLDQFGPGSRLIITTRDKQVLDDF 335 (524)
Q Consensus 271 ~~----~~~~~~----~~~~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~~iliTsR~~~~~~~~ 335 (524)
.. ...... ...-.+.+.+-.++-+|+||+-. +....+.+...+.. .|..||++|.+...+...
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 10 111111 23345566677889999999873 22222333222222 366788899887766543
No 336
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.21 E-value=0.045 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||++.++--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998874
No 337
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.20 E-value=0.044 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.-.++|.|++|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 338
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.17 E-value=0.046 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3569999999999999999998764
No 339
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.13 E-value=0.064 Score=50.57 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.6
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
++|+|+|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999877654
No 340
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.11 E-value=0.051 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999763
No 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.055 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 342
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.09 E-value=0.054 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.08 E-value=0.045 Score=49.76 Aligned_cols=25 Identities=32% Similarity=0.150 Sum_probs=22.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+|+|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999998775
No 344
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.07 E-value=0.071 Score=54.83 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...+|.++|++|.||||+|+.+++.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35689999999999999999998876433
No 345
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.05 E-value=0.6 Score=42.22 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=17.8
Q ss_pred eEEEEeccCcchhhHHHHHHh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~ 231 (524)
+.+.|.|+.|+||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 589999999999998776654
No 346
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.04 E-value=0.056 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....++|+|+.|+|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4569999999999999999998763
No 347
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.04 E-value=0.059 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.2
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
...+++|.|+.|+|||||++.++-..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987643
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.03 E-value=0.046 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.6
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-.|+|.|++|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 349
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.96 E-value=0.12 Score=47.01 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=24.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|+|.|++|+||||++..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999887654
No 350
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.96 E-value=0.15 Score=45.91 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3679999999999999999999988765
No 351
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.87 E-value=0.1 Score=50.63 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=26.2
Q ss_pred CCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 207 LPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 207 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+..+++.+.|-||+||||+|..++..+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 3457788899999999999999998877655
No 352
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.85 E-value=0.038 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
....|+|.|+.|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999888763
No 353
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.84 E-value=0.058 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|+.|+||||+++.+++++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999874
No 354
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.82 E-value=0.098 Score=54.39 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...+|.|+|++|+||||+|+.+...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999987653
No 355
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.82 E-value=0.1 Score=53.95 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=31.1
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
-|....+.+.+......+...+|.++|++|+||||+|+.+...+..
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3333444445544211223578999999999999999999887643
No 356
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.79 E-value=0.13 Score=46.56 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 5689999999999999999999887654
No 357
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.77 E-value=0.5 Score=48.55 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=38.7
Q ss_pred ccEEEecCCCCHH-----H----HHHHhcCCCCCCCCcEEEEEeCChh--hHH---HhCCCCcceEEeCCCCHHHHHHHH
Q 009845 292 KIFIVLDDVNKVR-----Q----LEYLTGGLDQFGPGSRLIITTRDKQ--VLD---DFGVLNTNIYEVNGLEYHEALELF 357 (524)
Q Consensus 292 ~~LlVlDdv~~~~-----~----~~~l~~~~~~~~~~~~iliTsR~~~--~~~---~~~~~~~~~~~l~~L~~~ea~~ll 357 (524)
.++||+|++.+.- . +..+...- ...|.++|++|.... ... ..... ..+.+..-+..++..++
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~--~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKANIP--TRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHHTCC--EEEEECCSCHHHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHhhhc--cEEEEEcCCHHHHHHhc
Confidence 3699999997542 1 22333221 146889999888764 111 11222 56778888888888877
Q ss_pred H
Q 009845 358 C 358 (524)
Q Consensus 358 ~ 358 (524)
-
T Consensus 420 d 420 (574)
T 2iut_A 420 D 420 (574)
T ss_dssp S
T ss_pred C
Confidence 4
No 358
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.75 E-value=0.087 Score=46.90 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=24.7
Q ss_pred eEEEEeccCcchhhHHHHHHhhhhccccc
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLISWEFE 239 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 239 (524)
+.|+|-|+-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999998865443
No 359
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.68 E-value=0.075 Score=48.69 Aligned_cols=34 Identities=26% Similarity=0.627 Sum_probs=25.4
Q ss_pred EEEeccCcchhhHHHHHHhhhhcccccceEEEEee
Q 009845 213 VGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANV 247 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 247 (524)
|+|+|-||+||||+|..++..+...-. .+.+.+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~-~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD-KIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS-CEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 566999999999999999998776533 3444333
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.62 E-value=0.083 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998865
No 361
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.60 E-value=0.15 Score=45.62 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|+|.|+.|+||||+++.+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999887654
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.55 E-value=0.062 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3569999999999999999998763
No 363
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.49 E-value=0.052 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....++|.|++|+|||||.+.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 364
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.48 E-value=0.06 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998764
No 365
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.48 E-value=0.1 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+..+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999987544
No 366
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.46 E-value=0.058 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.+|+|+|++|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999988764
No 367
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.43 E-value=0.076 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999863
No 368
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.40 E-value=0.065 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.4
Q ss_pred eEEEEeccCcchhhHHHHHHhhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
-.++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 369
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.39 E-value=0.15 Score=59.32 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=55.4
Q ss_pred hHHHhhcc-CCCCceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccccc-
Q 009845 198 EIKSLLCI-GLPDFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENIKI- 275 (524)
Q Consensus 198 ~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~- 275 (524)
.|..+|.. +-+..++|-|+|+.|+||||||.++.......-...+|+. .... .+ .. ++..++....+.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~-~e~~----~~--~~---~~~~~Gv~~~~l~ 1487 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHA----LD--PI---YARKLGVDIDNLL 1487 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-TTSC----CC--HH---HHHHTTCCGGGCE
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-cCCC----CC--HH---HHHHcCCCHHHeE
Confidence 34445542 3345789999999999999999999987766666666775 2111 11 11 144444432221
Q ss_pred ---CCC--CchHHHHHHHh-cCccEEEecCC
Q 009845 276 ---RTP--DLPKYMRERLQ-QMKIFIVLDDV 300 (524)
Q Consensus 276 ---~~~--~~~~~l~~~l~-~~~~LlVlDdv 300 (524)
+.. +....+...++ +..-+||+|-|
T Consensus 1488 ~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1488 CSQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred EeCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 111 23344444444 45669999988
No 370
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.37 E-value=0.049 Score=47.68 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 371
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.33 E-value=0.19 Score=45.22 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=52.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHhhccccc--ccCCC-CchHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSEVLDENI--KIRTP-DLPKYMRE 286 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~-~~~~~l~~ 286 (524)
..+..++|+-|.||||-+...+++....-..++++.-..+ . . .+ ..+...+ +.... ..... ++..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~-R-yg-~~i~sr~----G~~~~a~~i~~~~di~~---- 86 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-T-R-YS-SSFCTHD----RNTMEALPACLLRDVAQ---- 86 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-C-C-C----------------CEEEEESSGGGGHH----
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-c-c-ch-HHHHhhc----CCeeEEEecCCHHHHHH----
Confidence 5799999999999999888887776544333333321111 1 1 22 2332222 22111 11111 2222
Q ss_pred HHhcCccEEEecCCCCHHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 009845 287 RLQQMKIFIVLDDVNKVRQLEYLTGGLDQFGPGSRLIITTRDK 329 (524)
Q Consensus 287 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iliTsR~~ 329 (524)
.. +.--+|++|++.-...+..+...+. ..|..||+|.++.
T Consensus 87 ~~-~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 87 EA-LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp HH-TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred Hh-ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 22 3334999999822112444433332 1467899999983
No 372
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.32 E-value=0.12 Score=47.13 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=26.5
Q ss_pred ceEEEEe-ccCcchhhHHHHHHhhhhcccccceEEEEee
Q 009845 210 FRIVGIW-GMGGTGKTTLAGAIFNLISWEFEGKCFMANV 247 (524)
Q Consensus 210 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 247 (524)
.++|+|+ +-||+||||+|..++..+.......+.+.+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 4566665 6699999999999999887652333444333
No 373
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.30 E-value=0.22 Score=50.19 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=32.3
Q ss_pred ceEEEEeccCcchhhHHHH-HHhhhhcccccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAG-AIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
.+.++|.|.+|+|||+||. .+++... .+..+.+..+.+.. ....++.+.+..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~---~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKK---SAIARIIDKLRQ 227 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCH---HHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCc---HHHHHHHHHHHh
Confidence 4578999999999999965 5666542 33334444344332 345566666554
No 374
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.23 E-value=0.067 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988753
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.23 E-value=0.085 Score=45.22 Aligned_cols=25 Identities=40% Similarity=0.337 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998763
No 376
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.22 E-value=0.12 Score=49.73 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678999999999999999999988776544444443
No 377
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.21 E-value=0.086 Score=52.45 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=33.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc---ccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE---FEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
.+.++|.|.+|+|||+|+.++++....+ -+..+.+..+.+.. ....++.+.+..
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~---~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITF---EEAEFFMEDFRQ 207 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECH---HHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCc---HHHHHHHHHHhh
Confidence 3457899999999999999988875542 12233333343332 345556665544
No 378
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.19 E-value=0.19 Score=55.19 Aligned_cols=23 Identities=22% Similarity=-0.038 Sum_probs=20.7
Q ss_pred CceEEEEeccCcchhhHHHHHHh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIF 231 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~ 231 (524)
...+++|+|+.|.|||||.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999883
No 379
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.19 E-value=0.087 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998763
No 380
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.19 E-value=0.12 Score=50.13 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhhc--ccccceEEEE
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLIS--WEFEGKCFMA 245 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 245 (524)
+..+++.+.|-||+||||+|..++..+. ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3468999999999999999999998877 4433333333
No 381
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.17 E-value=0.088 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 382
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.16 E-value=0.081 Score=46.88 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=20.7
Q ss_pred ccchhhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhh
Q 009845 191 GLNSRIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 191 GR~~~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
|+..-.+.+.++... ...--|+|.|.+|+|||||...+...
T Consensus 13 ~~~~~~~~m~~~~~~--~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ--GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhc--CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333444444443331 23457889999999999999998753
No 383
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.13 E-value=0.077 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3568999999999999999998763
No 384
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.10 E-value=0.072 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3469999999999999999998764
No 385
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.10 E-value=0.074 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998753
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.09 E-value=0.1 Score=53.79 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=29.2
Q ss_pred hHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 198 EIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 198 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.+...|..+-....+++|.|++|+|||||++.++......
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3444554333345699999999999999999998765543
No 387
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.08 E-value=0.1 Score=49.54 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=26.4
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
+++|...+. ..+++|.|++|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 455655553 3589999999999999999998 543
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.08 E-value=0.079 Score=51.85 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 3569999999999999999999763
No 389
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.06 E-value=0.072 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 390
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.06 E-value=0.077 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEeccCcchhhHHHHHHhhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
+.+|+|+.|+|||||+..++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999987654
No 391
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.06 E-value=0.072 Score=45.24 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEEeccCcchhhHHHHHHhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~ 232 (524)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999864
No 392
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.05 E-value=0.08 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3569999999999999999998763
No 393
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.04 E-value=0.075 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999763
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.97 E-value=0.069 Score=51.87 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3569999999999999999998763
No 395
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.97 E-value=0.1 Score=47.03 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
..+|+|.|+.|+||||+|+.+++.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46999999999999999999998764
No 396
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.97 E-value=0.077 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 397
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.93 E-value=0.078 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 398
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.91 E-value=0.12 Score=52.56 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
...|.++|++|+||||+++.++..+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4689999999999999999998875533
No 399
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.90 E-value=0.092 Score=46.91 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....|+|.|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998753
No 400
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.86 E-value=0.086 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchhhHHHHHHhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
...+++|.|+.|+|||||.+.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 356999999999999999999875
No 401
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.86 E-value=0.082 Score=44.79 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.85 E-value=0.078 Score=45.96 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 403
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.84 E-value=0.083 Score=51.23 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999998763
No 404
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.84 E-value=0.083 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998763
No 405
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.84 E-value=0.1 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998764
No 406
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.84 E-value=0.076 Score=44.94 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEeccCcchhhHHHHHHhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~ 232 (524)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999865
No 407
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.83 E-value=0.11 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998763
No 408
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.82 E-value=0.17 Score=50.53 Aligned_cols=55 Identities=11% Similarity=-0.058 Sum_probs=34.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccc---cceEEEEeeccccccCcChHHHHHHHHHh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEF---EGKCFMANVREESEKGGGLVHLREQVLSE 267 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 267 (524)
.+.++|.|.+|+|||+|+.++++....+. +..+.+..+.+.. ....++.+.+...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~---~Ev~e~~~~~~~~ 209 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN---EEAQYFMSDFEKT 209 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH---HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc---HHHHHHHHHHHhc
Confidence 45677889999999999999988754322 1234443344332 3355666666543
No 409
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.81 E-value=0.083 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999998764
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.79 E-value=0.084 Score=44.52 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=19.0
Q ss_pred EEEeccCcchhhHHHHHHhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~ 233 (524)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998763
No 411
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.79 E-value=0.082 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999988764
No 412
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.78 E-value=0.11 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
.+.++|.|.+|+|||+|+.++++....
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 446788999999999999999886543
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.77 E-value=0.083 Score=50.62 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36799999999999999999988653
No 414
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.77 E-value=0.091 Score=51.46 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...++|.|+.|+|||||++.++..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999998876543
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.76 E-value=0.1 Score=46.75 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 236 (524)
...|+|.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 416
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.76 E-value=0.11 Score=50.38 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4569999999999999999998763
No 417
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.74 E-value=0.11 Score=54.36 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
...+|.|+|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.74 E-value=0.07 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=19.5
Q ss_pred EEEeccCcchhhHHHHHHhhh
Q 009845 213 VGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 213 v~I~G~~GiGKTtLa~~~~~~ 233 (524)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999876
No 419
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.73 E-value=0.085 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998753
No 420
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.73 E-value=0.083 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999998753
No 421
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.71 E-value=0.085 Score=45.31 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 422
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.70 E-value=0.093 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998764
No 423
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.62 E-value=0.22 Score=50.24 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=33.4
Q ss_pred CceEEEEeccCcchhhHHHH-HHhhhhcc------cccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAG-AIFNLISW------EFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
..+.++|.|.+|+|||+||. .+++.... +.+..+.+..+.+.. ....++.+.+..
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~---~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR---STVAQLVKRLTD 222 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH---HHHHHHHHHHHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc---HHHHHHHHHHHh
Confidence 34578899999999999965 55665542 133344444444332 335566666554
No 424
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.61 E-value=0.34 Score=48.79 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=32.5
Q ss_pred CceEEEEeccCcchhhHHHH-HHhhhhcccccceEEEEeeccccccCcChHHHHHHHHH
Q 009845 209 DFRIVGIWGMGGTGKTTLAG-AIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLS 266 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 266 (524)
..+.++|.|.+|+|||+||. .+++... .+..+.+..+.+.. ....++.+.+..
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~---~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQ---STVAGVVETLRQ 214 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCH---HHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCcc---hHHHHHHHHHhh
Confidence 34578899999999999965 5666542 23334444344332 335566666554
No 425
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.59 E-value=0.18 Score=47.75 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=27.7
Q ss_pred CceEEEEecc-CcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGM-GGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..++|.|+|. ||+||||+|..++..+...-..++.++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678888886 899999999999988765533344443
No 426
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.59 E-value=0.12 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 427
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.56 E-value=0.26 Score=43.43 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=25.4
Q ss_pred EEEEeccCcchhhHHHHHHhhhhcccccceEE
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNLISWEFEGKCF 243 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 243 (524)
.|+|-|+-|+||||.++.+++.+.......++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999999987765433333
No 428
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.55 E-value=0.22 Score=46.39 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=27.5
Q ss_pred CceEEEEecc-CcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWGM-GGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..++|.|+|. ||+||||+|..++..+...-..++.++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4678888865 899999999999988775433444443
No 429
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.53 E-value=0.093 Score=44.42 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.8
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4688999999999999999876
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.52 E-value=0.08 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||+|...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998864
No 431
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.50 E-value=0.086 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.6
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 432
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.49 E-value=0.098 Score=51.11 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
...++|+|+.|+|||||++.++..+... .+.+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 4589999999999999999998866542 3445554
No 433
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.48 E-value=0.095 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3468999999999999999998764
No 434
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.47 E-value=0.093 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999998764
No 435
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.46 E-value=0.092 Score=46.03 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999874
No 436
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.45 E-value=0.091 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998863
No 437
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.44 E-value=0.18 Score=44.26 Aligned_cols=29 Identities=14% Similarity=-0.142 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
..++.+++|+.|.||||.+...+++...+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35799999999999999999998876543
No 438
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.43 E-value=0.16 Score=49.85 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=27.1
Q ss_pred CceEEEEe-ccCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIW-GMGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
+.++|+|+ |-||+||||+|..++..+...-..+..++
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46777776 59999999999999988766533334443
No 439
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.42 E-value=0.11 Score=52.23 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=46.7
Q ss_pred CceEEEEeccCcchhhHHHH-HHhhhhcccccceEEEEeeccccccCcChHHHHHHHHHh--hcc-----cccccCCC--
Q 009845 209 DFRIVGIWGMGGTGKTTLAG-AIFNLISWEFEGKCFMANVREESEKGGGLVHLREQVLSE--VLD-----ENIKIRTP-- 278 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~-----~~~~~~~~-- 278 (524)
..+.++|.|.+|+|||+||. .+++... .+..+.+..+.+.. ....++.+.+... +.. ...+.+..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~---~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKA---SSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCH---HHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCc---hHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 34678899999999999965 5666543 33344444444332 2344555554432 110 00111111
Q ss_pred --------CchHHHHHHHhcCccEEEecCCC
Q 009845 279 --------DLPKYMRERLQQMKIFIVLDDVN 301 (524)
Q Consensus 279 --------~~~~~l~~~l~~~~~LlVlDdv~ 301 (524)
...++++. .++.+||++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11233333 4789999999983
No 440
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.39 E-value=0.11 Score=45.24 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
.--|+|.|.+|+|||||++.+.......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 4568899999999999997666554433
No 441
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.36 E-value=0.063 Score=47.66 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|++|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988754
No 442
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.32 E-value=0.1 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 443
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.31 E-value=0.1 Score=51.32 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...+++|.|+.|+|||||.+.++--
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4569999999999999999998763
No 444
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.26 E-value=0.1 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999863
No 445
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.24 E-value=0.08 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999875
No 446
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.18 E-value=0.1 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998864
No 447
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.14 E-value=0.1 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred eEEEEeccCcchhhHHHHHHhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
--|+|.|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999875
No 448
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.13 E-value=0.11 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999763
No 449
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.12 E-value=0.14 Score=43.43 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999753
No 450
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.10 E-value=0.11 Score=45.42 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998763
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.09 E-value=0.085 Score=46.40 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999853
No 452
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.08 E-value=0.11 Score=44.62 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998763
No 453
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.06 E-value=0.11 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 454
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.01 E-value=0.11 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998753
No 455
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.99 E-value=0.29 Score=48.48 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=22.5
Q ss_pred CceEEEEe-ccCcchhhHHHHHHhhhhcc
Q 009845 209 DFRIVGIW-GMGGTGKTTLAGAIFNLISW 236 (524)
Q Consensus 209 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~ 236 (524)
..++|+|+ |-||+||||+|..++..+..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 35666665 89999999999999987763
No 456
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.91 E-value=0.12 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999998763
No 457
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.90 E-value=0.12 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998763
No 458
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.90 E-value=0.11 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.88 E-value=0.12 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=20.0
Q ss_pred eEEEEeccCcchhhHHHHHHhhh
Q 009845 211 RIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 211 ~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 460
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.87 E-value=0.16 Score=49.14 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhccc
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 237 (524)
....++|.|+.|+|||||.+.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35699999999999999999999876543
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.84 E-value=0.19 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998864
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.83 E-value=0.12 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 463
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.81 E-value=0.12 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446889999999999999998764
No 464
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.81 E-value=0.12 Score=48.89 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=26.6
Q ss_pred hhhHHHhhccCCCCceEEEEec---cCcchhhHHHHHHhhhhccc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWG---MGGTGKTTLAGAIFNLISWE 237 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~ 237 (524)
+.++.+.+.. ..++++|++ -||+||||+|..++..+...
T Consensus 23 ~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 23 LEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 4444444432 234566665 99999999999999877654
No 465
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.80 E-value=0.19 Score=46.48 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.79 E-value=0.12 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999874
No 467
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.75 E-value=0.12 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
..-|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999999984
No 468
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.75 E-value=0.12 Score=45.30 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999874
No 469
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.74 E-value=0.12 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 470
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.69 E-value=0.12 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 471
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.68 E-value=0.12 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999998864
No 472
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=90.67 E-value=0.21 Score=48.08 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.8
Q ss_pred CceEEEEeccCcchhhHHHHHHhhhhcccccceEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNLISWEFEGKCFM 244 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 244 (524)
..+++++.|-||+||||+|..++..+...-..+..+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 467888999999999999999998877653333333
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.67 E-value=0.12 Score=44.74 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999864
No 474
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.67 E-value=0.12 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999863
No 475
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.66 E-value=0.12 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998764
No 476
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.64 E-value=0.19 Score=44.29 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 208 PDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 208 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
....+|+|+|++|+||+++|..+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 346799999999999999999887654
No 477
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.64 E-value=0.12 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998753
No 478
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.61 E-value=0.12 Score=45.09 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999764
No 479
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.60 E-value=0.12 Score=45.49 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 480
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.57 E-value=0.12 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||+|...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999877664
No 481
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.56 E-value=0.13 Score=44.74 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998764
No 482
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.56 E-value=0.16 Score=45.73 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999764
No 483
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.53 E-value=0.13 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=20.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999864
No 484
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.53 E-value=0.16 Score=48.13 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=26.6
Q ss_pred hhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhhc
Q 009845 196 IEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLIS 235 (524)
Q Consensus 196 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 235 (524)
++++...+. ..+++|.|++|+|||||.+.+.....
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccccc
Confidence 445555553 24899999999999999999887543
No 485
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.49 E-value=0.13 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998763
No 486
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.48 E-value=0.13 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998864
No 487
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.44 E-value=0.13 Score=45.33 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999998864
No 488
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.43 E-value=0.13 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEeccCcchhhHHHHHHhhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.36 E-value=0.12 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.--|+|.|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999875
No 490
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.34 E-value=0.14 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998753
No 491
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.32 E-value=0.12 Score=49.16 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEEeccCcchhhHHHHHHhh
Q 009845 212 IVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 212 ~v~I~G~~GiGKTtLa~~~~~ 232 (524)
-|+|.|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999764
No 492
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.30 E-value=0.14 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998864
No 493
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.29 E-value=0.22 Score=52.78 Aligned_cols=36 Identities=31% Similarity=0.210 Sum_probs=24.7
Q ss_pred hhhhHHHhhccCCCCceEEEEeccCcchhhHHHHHHhhhh
Q 009845 195 RIEEIKSLLCIGLPDFRIVGIWGMGGTGKTTLAGAIFNLI 234 (524)
Q Consensus 195 ~l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 234 (524)
..+.+...|.. ..+..|+||||+|||+.+.++...+
T Consensus 194 Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 194 QKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 34455555642 2378999999999997766665543
No 494
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.29 E-value=0.14 Score=45.00 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
..-|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 467899999999999999998754
No 495
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.25 E-value=0.15 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999764
No 496
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.25 E-value=0.14 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhHHHHHHhhh
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
...-|+|.|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999853
No 497
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.25 E-value=0.35 Score=45.40 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=26.7
Q ss_pred CceEEEEec-cCcchhhHHHHHHhhhhcccccceEEEE
Q 009845 209 DFRIVGIWG-MGGTGKTTLAGAIFNLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 245 (524)
..++|.|+| -||+||||+|..++..+...-..++.++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 356776665 5899999999999988776544444443
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.24 E-value=0.13 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhHHHHHHhhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFNL 233 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~~ 233 (524)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.23 E-value=0.18 Score=52.04 Aligned_cols=37 Identities=30% Similarity=0.148 Sum_probs=25.8
Q ss_pred CceEEEEeccCcchhhHHHHHHh-hhhcccccceEEEE
Q 009845 209 DFRIVGIWGMGGTGKTTLAGAIF-NLISWEFEGKCFMA 245 (524)
Q Consensus 209 ~~~~v~I~G~~GiGKTtLa~~~~-~~~~~~f~~~~~~~ 245 (524)
...+++|.|++|+|||||++.++ .-+...-...+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45699999999999999999963 33322123455554
No 500
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.20 E-value=0.14 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhHHHHHHhh
Q 009845 210 FRIVGIWGMGGTGKTTLAGAIFN 232 (524)
Q Consensus 210 ~~~v~I~G~~GiGKTtLa~~~~~ 232 (524)
.--|+|.|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45688999999999999999876
Done!