BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009848
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/517 (42%), Positives = 319/517 (61%), Gaps = 5/517 (0%)
Query: 9 QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA 68
+ ID T++++ LK+EVR+MI + + + KL ID+VQRLGV+Y F KEIEDEL+ +
Sbjct: 42 KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY 101
Query: 69 NDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAA 128
++ ++LYT S+RFRLLR+ +SCDV +S+ ++VRG+L LY+A+
Sbjct: 102 HNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS 161
Query: 129 HLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNM 188
+L VHGE ILDEAI FTT HL S+ + + L+E++ H +YL++
Sbjct: 162 YLRVHGEDILDEAISFTTHHL-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSV 220
Query: 189 YSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT 248
Y + H++ LL+FAK+DFN+LQ H+KELS++ RWWKDLD KLPYARDR+VE YFW
Sbjct: 221 YQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW- 279
Query: 249 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPA 308
+ GVY EP+Y+ GR +++K+I + S++DDT+D+Y T+EEL +T A++RWD D +P
Sbjct: 280 ISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPE 339
Query: 309 CMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEE 368
MK Y LL VY E + +A+ GR Y + YAK M + Y EAKW + Y PS EE
Sbjct: 340 YMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEE 399
Query: 369 YKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFE 428
+K+ AL + + SF+ MGDI T E F+W PKII AS ICR +DDVA HKF+
Sbjct: 400 FKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFK 459
Query: 429 QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLN 488
+R SA+ECYM+++ V+ +EA + + WKDLN +E LN
Sbjct: 460 HRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLN 518
Query: 489 LARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 524
LAR+ + +Y +G D YT K K + +L +P+
Sbjct: 519 LARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/521 (39%), Positives = 316/521 (60%), Gaps = 11/521 (2%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +ID E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 31 SFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 90
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 91 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 149
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 150 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 208
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 209 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 268
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 269 ECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 327
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 328 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 387
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 388 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 446
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 447 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 505
Query: 483 XGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/521 (39%), Positives = 316/521 (60%), Gaps = 11/521 (2%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +I E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 33 SFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 92
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 93 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 151
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 152 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 210
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 211 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 270
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFWTL GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 271 ECYFWTL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 329
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+E++ Y E+ W EGY
Sbjct: 330 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGY 389
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 390 TPPVSEYLSNALATTTYYLLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 448
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 449 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 507
Query: 483 XGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 508 LTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/521 (39%), Positives = 316/521 (60%), Gaps = 11/521 (2%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +ID E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI++
Sbjct: 31 SFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEI 90
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 91 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 149
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 150 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 208
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 209 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 268
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 269 ECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 327
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 328 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 387
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 388 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 446
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 447 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 505
Query: 483 XGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/521 (39%), Positives = 315/521 (60%), Gaps = 11/521 (2%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +I E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 33 SFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 92
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 93 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 151
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 152 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 210
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 211 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 270
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 271 ECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 329
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 330 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 389
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 390 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 448
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 449 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 507
Query: 483 XGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 508 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/521 (39%), Positives = 315/521 (60%), Gaps = 11/521 (2%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +I E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 18 SFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 77
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 78 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 136
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 137 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 195
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 196 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 255
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 256 ECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 314
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 315 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 374
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 375 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 433
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 434 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 492
Query: 483 XGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPV 522
P+LNLAR+ E Y +D YT+ K +K + +L D +
Sbjct: 493 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 533
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/504 (40%), Positives = 308/504 (61%), Gaps = 10/504 (1%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +ID E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI++
Sbjct: 31 SFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEI 90
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 91 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 149
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 150 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 208
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 209 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 268
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 269 ECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 327
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 328 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 387
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 388 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 446
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 447 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 505
Query: 483 XGPVLNLARMSEFIYEDGVDRYTN 506
P+LNLAR+ E Y +D YT+
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/504 (40%), Positives = 307/504 (60%), Gaps = 10/504 (1%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +ID E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 31 SFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 90
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 91 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 149
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 150 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 208
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 209 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 268
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YFW L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 269 ECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 327
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 328 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 387
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS I R++DD
Sbjct: 388 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDT 446
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 447 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 505
Query: 483 XGPVLNLARMSEFIYEDGVDRYTN 506
P+LNLAR+ E Y +D YT+
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/504 (40%), Positives = 307/504 (60%), Gaps = 10/504 (1%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +ID E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 31 SFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 90
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 91 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 149
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 150 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 208
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 209 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 268
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YF L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 269 ECYFSAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 327
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 328 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 387
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS ICR++DD
Sbjct: 388 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDT 446
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 447 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 505
Query: 483 XGPVLNLARMSEFIYEDGVDRYTN 506
P+LNLAR+ E Y +D YT+
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTH 529
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/504 (40%), Positives = 306/504 (60%), Gaps = 10/504 (1%)
Query: 8 SQTIDTTTQEQY----DALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDE 63
S +ID E+Y +ALK++ R M+ + +++ L+LID ++RLG++Y FEKEI+D
Sbjct: 31 SFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDI 90
Query: 64 LQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLS 123
L ++ N S+ ++L T +L+FRLLRQ IS ++ S+ ++V G+L+
Sbjct: 91 LDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLN 149
Query: 124 LYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXX 183
LYEA+H+ H + IL++A+ F+T HL+S + S L EQ+ H
Sbjct: 150 LYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETR 208
Query: 184 YYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242
++++ +Y ++ + LL+FAKLDFNLLQ H++EL+ ++RWWKDLD T LPYARDR+V
Sbjct: 209 FFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVV 268
Query: 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNV 302
E YF L GVY EP+Y+ R+++ K I +IS++DDTFDAYGT +EL +T+A++RWD N
Sbjct: 269 ECYFSAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINE 327
Query: 303 TDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362
D LP MK Y +L +Y + E+EL+ GRS+ + +A + M+EV+ Y E+ W EGY
Sbjct: 328 IDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGY 387
Query: 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422
P V EY S AL + + T S+L M AT++ FEW+ K PKI+ AS I R++DD
Sbjct: 388 TPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDT 446
Query: 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
A+++ E+ RG I + +EC M+ + +S +EA WKD+N E
Sbjct: 447 ATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEF 505
Query: 483 XGPVLNLARMSEFIYEDGVDRYTN 506
P+LNLAR+ E Y +D YT+
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTH 529
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 283/528 (53%), Gaps = 14/528 (2%)
Query: 4 NFLCSQTIDTTTQEQYDALKQ---EVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEI 60
+FL S D + + D K+ EVRR I + E L LID VQRLG+ Y+FE +I
Sbjct: 28 DFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDI 87
Query: 61 EDELQKLANDLGSDS---DNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINN 117
L + + G D +L+ +L FRLLRQ ++S + ++ +
Sbjct: 88 RRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKED 147
Query: 118 VRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXX 177
+ +LSLYEA+ LA+ GE ILDEA VF +HLK + I LAEQ+ H
Sbjct: 148 TKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRT 207
Query: 178 XXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYA 237
+ + Y + + ++ LL+ A LD+N++Q+ +Q++L + +RWW+ + + TKL +A
Sbjct: 208 QRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFA 267
Query: 238 RDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR 297
RDR++E ++W VGV EP+Y+ R V+K+ +++IDD +D YGT +EL LFT+AV+R
Sbjct: 268 RDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVER 326
Query: 298 WDTNVTDTLPACMKFIYNKLLGVYNE-AEEELAKQGRSYGIPYAKQTMQEVILMYFTEAK 356
WD N + LP MK + L NE A + L +G + +PY + ++ + EAK
Sbjct: 327 WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI-LPYLTKAWADLCNAFLQEAK 385
Query: 357 WLKEGYVPSVEEYKSVALRSIA-VLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENI 415
WL P+ ++Y A +S + L ++ A F + +I +E+ E + K II+ +I
Sbjct: 386 WLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEI-ENLQKYHDIISRPSHI 444
Query: 416 CRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXX 475
RL +D+AS E RG ++V CYM+ +SEE A +++ I WK +N +E
Sbjct: 445 FRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMN-KEKLGG 503
Query: 476 XXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKM-KDQVALVLKDPV 522
+NLAR S Y +G D +T+ ++ + +V V+ +P+
Sbjct: 504 SLFAKPFVETAINLARQSHCTYHNG-DAHTSPDELTRKRVLSVITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/520 (32%), Positives = 268/520 (51%), Gaps = 11/520 (2%)
Query: 2 LSNFLCSQTIDTTTQEQYDALK-----QEVRRMITSAVDEISHKLHLIDAVQRLGVAYQF 56
L +F Q+ D+ +E+ ++ +V+ M+ VD I +L LID ++RLG++ F
Sbjct: 44 LWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSI-RRLELIDDLRRLGISCHF 102
Query: 57 EKEIEDELQ-KLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVXX-XXXXXXXXXXASM 114
E+EI + L K + D +LY+ +LRFRLLRQ +S +V S+
Sbjct: 103 EREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSL 162
Query: 115 INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHXXXXXXX 174
+++ RG+L LYEA+ L+ GE L A F T L+ + NL I+
Sbjct: 163 VDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTH 222
Query: 175 XXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKL 234
+++ Y R + T+L+ AKLDFN++QA Q+EL + +RWW + +L
Sbjct: 223 WRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHEL 282
Query: 235 PYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEA 294
P+ RDR+VE Y+WT GV ++ + RI+++KI L++ IDD FD YGT EEL LFT A
Sbjct: 283 PFVRDRIVECYYWT-TGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTA 341
Query: 295 VKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTE 354
++RWD LP M+ Y L NE + + PY ++ +I Y E
Sbjct: 342 IQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIE 401
Query: 355 AKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 414
AKW +G+ PS+EEY + SI +P+++ F + D +E E + K I+ AS
Sbjct: 402 AKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCT 461
Query: 415 ICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXX 474
I RL DD+ + E +RG +P +V+CYM + SEEEA + + I WK +N E
Sbjct: 462 ILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMTS 521
Query: 475 XXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKMKDQV 514
NLARM+++IY+ D + + + +++
Sbjct: 522 SFSKYFVEVSA--NLARMAQWIYQHESDGFGMQHSLVNKM 559
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 257 bits (657), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 273/533 (51%), Gaps = 17/533 (3%)
Query: 3 SNFLCSQTIDTTTQEQYD---ALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKE 59
SN++ S T + D L +VR ++ ++ + +L LI ++ LG++ F+ E
Sbjct: 18 SNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQ-QLELIHDLKYLGLSDFFQDE 76
Query: 60 IEDELQKLANDLGSDSDN------LYTVSLRFRLLRQQRVKISCDVXX-XXXXXXXXXXA 112
I++ L + N+ +N LY +L FRLLRQ IS DV A
Sbjct: 77 IKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKA 136
Query: 113 SMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMI---SRVISNNLAEQIQHXX 169
S+ + +GML LYEA+ L GE L+ A F T L+ + I NL I+H
Sbjct: 137 SLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSL 196
Query: 170 XXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLD 229
++++ Y+R + + + AKL+FN++QA HQ+EL D++RWW L
Sbjct: 197 DLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLC 256
Query: 230 IPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELT 289
P KLP+ RDR+VE +FW VG++ ++ + R + + II L ++IDD +D YGT +EL
Sbjct: 257 FPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELE 315
Query: 290 LFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVIL 349
LFT+ KRWDT LP M+ Y + ++A ++ K+ + + Y ++++ +++
Sbjct: 316 LFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVE 375
Query: 350 MYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIA-TKEVFEWVLKVPKI 408
YF EAKW GY PS++EY ++A S+A +++ ++ + + V + + + I
Sbjct: 376 AYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDI 435
Query: 409 ITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468
+ + I RL DD+ + FE RG +P ++CYMK+ SEEEA + + I WKD+N
Sbjct: 436 LCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMN 495
Query: 469 YEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDP 521
G N+ R+++FIY G K + +A +L +P
Sbjct: 496 TAIAAGYPFPDGMVAGAA-NIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/504 (30%), Positives = 254/504 (50%), Gaps = 10/504 (1%)
Query: 26 VRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKL-------ANDLGSDSDNL 78
V+ + D+I +L LID +QR+G++ F+ E ++ L + N + +L
Sbjct: 40 VKMELEKETDQI-RQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDL 98
Query: 79 YTVSLRFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVIL 138
Y+ SL FRLLR+ +++ +V S+ ++ RG+L LYEA+ L GE L
Sbjct: 99 YSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTL 158
Query: 139 DEAIVFTTTHLKSMISRV-ISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDE 197
+ A F T L+ ++ + +L +I + ++ Y + +
Sbjct: 159 ESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNP 218
Query: 198 TLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPK 257
+L+ A LD N++QA Q+EL + RWW++ KLP+ARDR+VE YFW G+ +
Sbjct: 219 VVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQ 277
Query: 258 YTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKL 317
+ RI++ K+ LI++IDD +D YGT EEL FT+ ++RWD N D LP M+ + L
Sbjct: 278 HASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLAL 337
Query: 318 LGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSI 377
++ ++ K+ IPY +Q+ ++ Y EA+W G+ PS+EEY + +SI
Sbjct: 338 NNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSI 397
Query: 378 AVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSA 437
+ ++T F + D TKE + + K ++ S + RL DD+ + E RG +P +
Sbjct: 398 SGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKS 457
Query: 438 VECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIY 497
++CYM + SE EA K + IA WK +N E G ++L RM++ +Y
Sbjct: 458 LQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMY 517
Query: 498 EDGVDRYTNSYKMKDQVALVLKDP 521
+G T + Q+ L +P
Sbjct: 518 HNGDGHGTQHPIIHQQMTRTLFEP 541
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 224 bits (571), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 163/521 (31%), Positives = 261/521 (50%), Gaps = 40/521 (7%)
Query: 40 KLHLIDAVQRLGVAYQFEKEIEDELQ---KLANDLG------SDSDNLYTVSLRFRLLRQ 90
+L ++D + RLG+ FEKEI++ L + N+ G + +L T +L FRLLR
Sbjct: 301 RLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRL 360
Query: 91 QRVKISCDVXXXXXXXXXXXXAS---MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTT 147
R +S + S +V ML+LY A+ LA GE ILDEA F T
Sbjct: 361 HRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATK 420
Query: 148 HL-----KSMISRVISN--NLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD------- 193
+L KS S +N NL+++I++ Y +Y D
Sbjct: 421 YLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCV 480
Query: 194 -----LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT 248
+++E L+ KLDFN++Q+ HQ+E+ ++T W++D +P +AR+R +E YF
Sbjct: 481 YKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLEFYFLV 539
Query: 249 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPA 308
G Y EP+Y R L +K+ CL +++DD +D YGT +EL LFTEAV+RWD + T+ LP
Sbjct: 540 AAGTY-EPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPD 598
Query: 309 CMKFIYNKLLGVYNEAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVE 367
MK Y + +E E K QGR + + ++ ++ +L Y+ EA+WL YVP+++
Sbjct: 599 YMKLCYQIYYDIVHEVAWEAEKEQGREL-VSFFRKGWEDYLLGYYEEAEWLAAEYVPTLD 657
Query: 368 EYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVLKVPKIITASEN--ICRLLDDVAS 424
EY + SI ++ + L M G + ++E E V + + N I RL DD +
Sbjct: 658 EYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKT 717
Query: 425 HKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXX 483
+K E+ RG + S++ECYMK H +EEEA ++ + K+L E
Sbjct: 718 YKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT-REFLKPDDVPFACK 776
Query: 484 GPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF 524
+ R++ I++DG + ++KD + L +P+
Sbjct: 777 KMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 148/522 (28%), Positives = 253/522 (48%), Gaps = 41/522 (7%)
Query: 36 EISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAN-----DLGSDSDN----LYTVSLRFR 86
++ +L +D V+RLG+ F++EI++ L + + +G +N + ++ R
Sbjct: 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLR 328
Query: 87 LLRQQRVKISCDVXXXXXXXXXXXXASMINNVRG---MLSLYEAAHLAVHGEVILDEAIV 143
+LR +S DV + RG ML++ +H++ GE I++EA +
Sbjct: 329 ILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKL 388
Query: 144 FTTTHLKSMISRV-------ISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD--- 193
T +L++ + V N+ ++++ Y+ Y DD
Sbjct: 389 CTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWL 448
Query: 194 ---------LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEV 244
+ +E L+ AKLDFN +Q+ HQ EL D+ RWWK T L + R+R+ E+
Sbjct: 449 GKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507
Query: 245 YFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTD 304
YF ++ EP+++ R + +K ++DD +DA+G+ ++L LFTE+VKRWD ++ D
Sbjct: 508 YFSPASFIF-EPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566
Query: 305 TLPACMKFIYNKLLGVYNE-AEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYV 363
+P MK + +N+ A+E +QGR + Y + + + Y EA+W + YV
Sbjct: 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRDV-LGYIQNVWKVQLEAYTKEAEWSEAKYV 625
Query: 364 PSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVA 423
PS EY A SIA+ VV S L G++ T EV + + + + RL++D
Sbjct: 626 PSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTK 685
Query: 424 SHKFEQKRGHIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXX 482
+++ E+ +G + SA++CYMK H +SEEEA + ++ + N ++LN E
Sbjct: 686 TYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIPDIYKR 745
Query: 483 XGPVLNLARMSEFIYEDGVDRYTNSYKM--KDQVALVLKDPV 522
V AR+ + Y G D T S+ M K+ V L PV
Sbjct: 746 L--VFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 238/512 (46%), Gaps = 35/512 (6%)
Query: 40 KLHLIDAVQRLGVAYQFEKEIEDEL-------QKLANDLGSDS--DNLYTVSLRFRLLRQ 90
+L L+D ++ LG+ F++EI+ L + G DS +L T +L R LR
Sbjct: 249 RLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRM 308
Query: 91 QRVKISCDVXXXXXXXXXXXXASMINN---VRGMLSLYEAAHLAVHGEVILDEAIVFTTT 147
+S DV +S +R +++L+ A+ LA E +D+A F
Sbjct: 309 HGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEP 368
Query: 148 HLKSMISRVISNN--LAEQIQHXXXXXXXXXXXXXXXXYYLN------------MYSRDD 193
+L+ ++ IS N L ++I++ Y++ +Y
Sbjct: 369 YLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPS 428
Query: 194 LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVY 253
L + L+ AKLDFN++Q+ HQ+EL +TRWWK+ + + + R R+ EVYF +
Sbjct: 429 LSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSAT--- 484
Query: 254 CEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFI 313
EP+Y+ RI +KI CL L DD D + T +EL FTE VKRWDT++ +P CM+
Sbjct: 485 FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTC 544
Query: 314 YNKLLGVYNEAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSV 372
+ + E ++ K QGR + + ++ + Y E +WL+ GY+P+ EEY
Sbjct: 545 FKVWFKLMEEVNNDVVKVQGRDM-LAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKT 603
Query: 373 ALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG 432
S+ + P L MG++ +V E V + RL +D +++ E+ RG
Sbjct: 604 YAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARG 663
Query: 433 HIPSAVECYMKQHV-VSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLAR 491
S + CYMK + +EE+A K + + K+ ++E + NL R
Sbjct: 664 QQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNL-R 722
Query: 492 MSEFIYEDGVDRYT-NSYKMKDQVALVLKDPV 522
+ I+ +D Y + ++KD + V DP+
Sbjct: 723 LCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 42/307 (13%)
Query: 5 FLCSQTIDTTTQEQYDALKQEVRRMITS-----AVDEISHKLHLIDAVQRLGVAYQFEKE 59
F QT D+ E L+ V+R VD H + ++D +QRLG++ FE+E
Sbjct: 212 FAFMQTRDSNCLEY---LRNAVKRFNGGVPNVFPVDLFEH-IWIVDRLQRLGISRYFEEE 267
Query: 60 IE---DELQKLANDLG------SDSDNLYTVSLRFRLLRQQRVKISCDVXXXXXXXXXXX 110
I+ D + + D G S ++ ++ FRLLRQ ++S DV
Sbjct: 268 IKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFF 327
Query: 111 XASMINN--VRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-------VISNNL 161
+N V GM +LY A+ LA E IL A F+ +L R +I +L
Sbjct: 328 CFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDL 387
Query: 162 AEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDD-------------LHDETLLKFAKLDFN 208
+I +Y++ Y ++ +++ L+ AK D+N
Sbjct: 388 PGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYN 447
Query: 209 LLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKI 268
QA HQ E +W+++ + ++ R ++E Y+ ++ E + + R++ +K
Sbjct: 448 NCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIF-ESERSHERMVWAKS 505
Query: 269 ICLISLI 275
L+ I
Sbjct: 506 SVLVKAI 512
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 278 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACM--KFIYNKLLGVYNEAEEELAKQGRSY 335
T D Y FE++TL + + + + LPA + F +LL + + EE+ +Y
Sbjct: 38 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID----TY 93
Query: 336 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIAT 395
YA T+Q+ + M F ++L P V +++V L ++ VL S L G
Sbjct: 94 AFAYA-HTIQK-LYMGFNAIRYLP----PHV--FQNVPLLTVLVLERNDLSSLPRG---- 141
Query: 396 KEVFEWVLKVPKIITASENICRLLDDV 422
+F K+ + ++ N+ R+ DD
Sbjct: 142 --IFHNTPKLTTLSMSNNNLERIEDDT 166
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 278 TFDAYGTFEELTLFTEAVKRWDTNVTDTLPACM--KFIYNKLLGVYNEAEEELAKQGRSY 335
T D Y FE++TL + + + + LPA + F +LL + + EE+ +Y
Sbjct: 32 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID----TY 87
Query: 336 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIAT 395
YA T+Q+ + M F ++L P V +++V L ++ VL S L G
Sbjct: 88 AFAYA-HTIQK-LYMGFNAIRYLP----PHV--FQNVPLLTVLVLERNDLSSLPRG---- 135
Query: 396 KEVFEWVLKVPKIITASENICRLLDD 421
+F K+ + ++ N+ R+ DD
Sbjct: 136 --IFHNTPKLTTLSMSNNNLERIEDD 159
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 5 FLCSQTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDEL 64
FL + + + + Y Q+VR +I + D++ ++ A+ +EI+D L
Sbjct: 360 FLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPL 419
Query: 65 QKLANDLGSDSDNL 78
ANDL + NL
Sbjct: 420 TMYANDLLTTPVNL 433
>pdb|4AE4|A Chain A, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
pdb|4AE4|B Chain B, The Ubap1 Subunit Of Escrt-I Interacts With Ubiquitin Via
A Novel Souba Domain
Length = 118
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 399 FEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWL 458
+E VL+ K A NI ++LD + +H ++G P VE ++ H SEE+ + +L
Sbjct: 22 YECVLRAXK--AAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEXHQCSEEKXXE--FL 77
Query: 459 EIANGWKDLNYE 470
++ + +K+ +E
Sbjct: 78 QLXSKFKEXGFE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,468,798
Number of Sequences: 62578
Number of extensions: 505255
Number of successful extensions: 1465
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 30
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)