Query 009848
Match_columns 524
No_of_seqs 196 out of 901
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 8E-160 3E-164 1294.8 48.0 512 9-524 42-554 (554)
2 3m00_A Aristolochene synthase; 100.0 8E-159 3E-163 1286.1 48.4 509 11-524 40-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2E-158 7E-163 1285.4 46.5 510 9-523 36-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 6E-153 2E-157 1248.6 51.1 511 9-523 23-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-152 8E-157 1243.6 47.8 509 11-523 29-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 4E-152 1E-156 1245.4 43.4 510 10-523 57-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 6E-142 2E-146 1193.7 49.2 484 34-524 243-756 (764)
8 3sdr_A Alpha-bisabolene syntha 100.0 2E-142 7E-147 1204.8 45.6 487 34-524 295-817 (817)
9 3s9v_A Abietadiene synthase, c 100.0 7E-142 2E-146 1196.1 47.9 484 34-523 267-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 1E-106 4E-111 899.9 34.9 449 16-523 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 6.5E-51 2.2E-55 420.3 18.7 251 211-472 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2.3E-49 7.9E-54 401.9 19.7 242 213-472 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 1E-47 3.5E-52 393.7 20.3 244 211-472 25-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 3.4E-46 1.2E-50 392.4 18.1 242 221-471 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.4E-33 4.8E-38 299.9 18.6 246 217-472 130-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 2.6E-18 9E-23 179.2 16.1 244 219-491 33-293 (374)
17 4hd1_A Squalene synthase HPNC; 88.9 19 0.00065 35.4 19.3 187 262-483 41-239 (294)
18 3ipi_A Geranyltranstransferase 88.7 2.5 8.4E-05 42.1 10.8 142 335-492 127-278 (295)
19 3acx_A Dehydrosqualene synthas 87.5 23 0.00077 34.8 18.8 195 260-483 38-244 (293)
20 3lmd_A Geranylgeranyl pyrophos 86.9 5 0.00017 41.0 12.1 103 335-445 160-275 (360)
21 3oyr_A Trans-isoprenyl diphosp 81.9 24 0.00081 35.7 14.5 90 332-427 148-239 (345)
22 3rmg_A Octaprenyl-diphosphate 81.3 20 0.0007 36.0 13.7 91 332-427 130-221 (334)
23 3ts7_A Geranyltranstransferase 81.2 17 0.00057 36.6 12.9 111 345-468 158-281 (324)
24 3mzv_A Decaprenyl diphosphate 80.6 35 0.0012 34.4 15.2 108 332-445 136-255 (341)
25 1rtr_A Geranyltranstransferase 79.4 10 0.00035 37.6 10.6 110 345-468 148-270 (301)
26 3lsn_A Geranyltranstransferase 77.6 20 0.00068 35.7 12.0 123 347-491 154-289 (304)
27 3p8r_A Geranyltranstransferase 76.0 12 0.00041 37.2 9.9 111 345-468 158-281 (302)
28 3lom_A Geranyltranstransferase 75.8 23 0.0008 35.3 12.0 113 345-468 158-282 (313)
29 3m0g_A Farnesyl diphosphate sy 75.2 16 0.00053 36.3 10.5 109 345-468 147-268 (297)
30 2h8o_A Geranyltranstransferase 73.6 22 0.00074 35.9 11.2 110 345-468 192-314 (335)
31 1wy0_A Geranylgeranyl pyrophos 73.2 30 0.001 34.8 12.3 86 336-427 138-225 (342)
32 4f62_A Geranyltranstransferase 71.8 26 0.0009 35.0 11.2 110 346-468 152-274 (317)
33 2ftz_A Geranyltranstransferase 71.7 30 0.001 34.0 11.5 120 335-468 134-263 (284)
34 3pko_A Geranylgeranyl pyrophos 70.7 53 0.0018 32.9 13.3 103 335-444 143-258 (334)
35 3p8l_A Geranyltranstransferase 69.4 26 0.00087 34.8 10.5 109 346-468 157-278 (302)
36 3nf2_A Putative polyprenyl syn 67.5 87 0.003 31.6 14.2 86 336-426 144-230 (352)
37 4dhd_A Polyprenyl synthetase; 66.8 48 0.0016 33.6 12.1 88 336-427 133-232 (358)
38 3apz_A Geranyl diphosphate syn 65.9 61 0.0021 32.5 12.7 89 335-428 153-242 (348)
39 3npk_A Geranyltranstransferase 62.9 52 0.0018 32.4 11.2 127 344-491 144-280 (291)
40 3pde_A Farnesyl-diphosphate sy 57.1 42 0.0015 33.3 9.4 109 346-468 156-277 (309)
41 3llw_A Geranyltranstransferase 56.5 32 0.0011 34.3 8.4 111 345-468 159-280 (311)
42 3uca_A Geranyltranstransferase 55.7 54 0.0019 32.8 10.0 111 345-468 180-303 (324)
43 2j1p_A Geranylgeranyl pyrophos 54.8 22 0.00076 35.0 6.9 108 346-468 161-271 (293)
44 1rqj_A Geranyltranstransferase 51.9 65 0.0022 31.7 9.8 111 345-468 152-275 (299)
45 2azj_A Geranylgeranyl pyrophos 45.2 90 0.0031 30.5 9.5 116 336-468 136-257 (289)
46 1wmw_A Geranylgeranyl diphosph 45.0 82 0.0028 31.4 9.4 85 335-426 130-218 (330)
47 1pd3_A Nonstructural protein N 40.8 19 0.00065 26.1 2.7 33 17-50 16-48 (58)
48 1uby_A FPS, farnesyl diphospha 40.1 1E+02 0.0035 31.2 9.3 89 335-427 169-264 (367)
49 2q80_A Geranylgeranyl pyrophos 37.7 1.4E+02 0.0048 29.3 9.7 88 332-427 108-196 (301)
50 3tc1_A Octaprenyl pyrophosphat 37.3 3.1E+02 0.011 27.0 12.9 101 335-445 122-235 (315)
51 2e8v_A Geranylgeranyl pyrophos 33.1 76 0.0026 31.8 6.9 86 336-427 132-221 (340)
52 3aqb_B Component B of hexapren 32.9 1.1E+02 0.0037 30.4 8.0 89 335-427 130-218 (325)
53 1yhl_A Farnesyl pyrophosphate 32.9 1E+02 0.0035 31.0 7.9 106 335-445 151-284 (362)
54 2qis_A Farnesyl pyrophosphate 31.6 1.4E+02 0.0048 30.3 8.7 88 336-427 177-271 (374)
55 3lk5_A Geranylgeranyl pyrophos 29.2 4.6E+02 0.016 26.5 14.7 77 344-426 184-263 (380)
56 3kra_B Geranyl diphosphate syn 28.8 71 0.0024 31.0 5.6 92 347-468 151-244 (274)
57 2her_A Fragment, farnesyl pyro 26.9 5E+02 0.017 26.1 12.3 107 335-445 168-284 (368)
58 3fau_A NEDD4-binding protein 2 22.9 66 0.0022 25.0 3.4 24 445-468 6-29 (82)
59 2ee7_A Sperm flagellar protein 22.7 72 0.0025 27.5 3.8 66 213-280 12-85 (127)
60 1qjt_A EH1, epidermal growth f 20.6 2E+02 0.0069 22.7 6.1 64 35-101 25-89 (99)
61 1v4e_A Octoprenyl-diphosphate 20.1 2.2E+02 0.0075 27.8 7.4 87 332-428 124-212 (299)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=7.9e-160 Score=1294.76 Aligned_cols=512 Identities=47% Similarity=0.841 Sum_probs=482.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhccCCCCCChhhhHHHHHHh
Q 009848 9 QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 88 (524)
Q Consensus 9 ~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~dl~~~al~FRlL 88 (524)
....+.+.+|+|+||+|||+||.++..|++++|+|||+||||||+|||++||+++|+++|++...+..||++|||+||||
T Consensus 42 ~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlL 121 (554)
T 3g4d_A 42 KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121 (554)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 34467899999999999999997534789999999999999999999999999999999985112237999999999999
Q ss_pred hhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhcCCCcHHHHHHHH
Q 009848 89 RQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHA 168 (524)
Q Consensus 89 R~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~~~~~~l~~~V~~a 168 (524)
|||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||+.||++||++++.++ +++|+++|+||
T Consensus 122 R~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~a 200 (554)
T 3g4d_A 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHA 200 (554)
T ss_dssp HHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHH
T ss_pred HhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 78899999999
Q ss_pred ccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 009848 169 LRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWT 248 (524)
Q Consensus 169 L~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~yf~a 248 (524)
|++|||+++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|||+++||.++|||||||++|||||+
T Consensus 201 L~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~ 280 (554)
T 3g4d_A 201 LKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI 280 (554)
T ss_dssp HHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH
T ss_pred hCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999778999999999999999
Q ss_pred hhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHH
Q 009848 249 LVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEEL 328 (524)
Q Consensus 249 ~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~ 328 (524)
+ |++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++
T Consensus 281 ~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~ 359 (554)
T 3g4d_A 281 S-GVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLV 359 (554)
T ss_dssp H-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred H-HhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHH
Q 009848 329 AKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKI 408 (524)
Q Consensus 329 ~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l 408 (524)
.++||+++++|++++|+++++||++||+|+.+||+||+||||+||.+|+|++++++++++|||+.+|+++++|+.++|+|
T Consensus 360 ~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i 439 (554)
T 3g4d_A 360 AEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKI 439 (554)
T ss_dssp GGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHH
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHH
Confidence 89998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHH
Q 009848 409 ITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLN 488 (524)
Q Consensus 409 ~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N 488 (524)
+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+|| ++|++++++|++|+++++|
T Consensus 440 ~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~N 518 (554)
T 3g4d_A 440 IQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLN 518 (554)
T ss_dssp HHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHHSSSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 9999998999999999999
Q ss_pred HhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 009848 489 LARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 524 (524)
Q Consensus 489 ~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~~ 524 (524)
+||++++||+++ ||||.|+. ||++|++||++|||+
T Consensus 519 laR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 519 LARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999 99999965 999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=7.7e-159 Score=1286.07 Aligned_cols=509 Identities=43% Similarity=0.782 Sum_probs=487.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhh
Q 009848 11 IDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQ 90 (524)
Q Consensus 11 ~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~dl~~~al~FRlLR~ 90 (524)
..+.+.+|+|+||+|||+||.++..|++++|+|||+||||||+|||++||+++|+++|++ +....||++|||+||||||
T Consensus 40 ~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~dl~~~al~FRLLR~ 118 (550)
T 3m00_A 40 VAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQ 118 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHH-CCCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHh-cccCCCHHHHHHHHHHHHh
Confidence 456789999999999999997534789999999999999999999999999999999985 3325899999999999999
Q ss_pred cCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhcCCCcHHHHHHHHcc
Q 009848 91 QRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALR 170 (524)
Q Consensus 91 ~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~~~~~~l~~~V~~aL~ 170 (524)
|||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||+.||++||++++.++ +++|+++|+|||+
T Consensus 119 hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~ 197 (550)
T 3m00_A 119 HGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL-KSPLREQVTHALE 197 (550)
T ss_dssp TTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGC-CTTHHHHHHHHHH
T ss_pred cCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999998776 7889999999999
Q ss_pred CCccCCcchhHHHhhHH-hhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 009848 171 LPLRKALPRLEARYYLN-MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTL 249 (524)
Q Consensus 171 ~P~~~~~~rlear~yi~-~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~yf~a~ 249 (524)
+|||+++||+|||+||+ +|++++++|+.||||||+|||+||++||+||++++|||+++||.++|||||||++|||||++
T Consensus 198 ~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~ 277 (550)
T 3m00_A 198 QCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL 277 (550)
T ss_dssp SCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHH
T ss_pred CCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999997799999999999999999
Q ss_pred hccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 009848 250 VGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELA 329 (524)
Q Consensus 250 ~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~ 329 (524)
|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++.
T Consensus 278 -~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~ 356 (550)
T 3m00_A 278 -GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS 356 (550)
T ss_dssp -HHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHH
Q 009848 330 KQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKII 409 (524)
Q Consensus 330 ~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~ 409 (524)
++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|+|++++++++++|+ +.+|+++++|+.++|+|+
T Consensus 357 ~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~ 435 (550)
T 3m00_A 357 SAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKIL 435 (550)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHH
T ss_pred HcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHH
Confidence 9998899999999999999999999999999999999999999999999999999998887 679999999999999999
Q ss_pred HHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHH
Q 009848 410 TASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNL 489 (524)
Q Consensus 410 ~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~ 489 (524)
++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|++++++||+++||++| ++|++++++|++|+++++|+
T Consensus 436 ~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~Nl 514 (550)
T 3m00_A 436 EASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNL 514 (550)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHTSSSCSSCGGGTHHHHHH
T ss_pred HHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999989999999999999
Q ss_pred hhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 009848 490 ARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 524 (524)
Q Consensus 490 aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~~ 524 (524)
||+++++|++++||||.|+. ||++|++||++|||+
T Consensus 515 aR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 515 ARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 99999999984499999975 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.1e-158 Score=1285.35 Aligned_cols=510 Identities=35% Similarity=0.615 Sum_probs=485.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhchh-chhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhcc---CCCCCChhhhHHH
Q 009848 9 QTIDTTTQEQYDALKQEVRRMITSAVD-EISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDL---GSDSDNLYTVSLR 84 (524)
Q Consensus 9 ~~~~~~~~~~~~~lk~~v~~~l~~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~---~~~~~dl~~~al~ 84 (524)
....+.+++++|+||+|||+||.+ .. +++++|+|||+||||||+|||++||+++|+++|+.. .....||++|||+
T Consensus 36 ~~~~~~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~ 114 (555)
T 3n0f_A 36 DESIEVYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALS 114 (555)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHH
Confidence 445678999999999999999975 45 899999999999999999999999999999999830 1124799999999
Q ss_pred HHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhh-hcCCCcHHH
Q 009848 85 FRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMIS-RVISNNLAE 163 (524)
Q Consensus 85 FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~-~~~~~~l~~ 163 (524)
|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||+.||++||++.+. .+ +++|++
T Consensus 115 FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~-~~~l~~ 193 (555)
T 3n0f_A 115 FRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKI-GKELAE 193 (555)
T ss_dssp HHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHH-CHHHHH
T ss_pred HHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccC-CchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999775 45 778999
Q ss_pred HHHHHccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHH
Q 009848 164 QIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVE 243 (524)
Q Consensus 164 ~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve 243 (524)
+|+|||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||++++|||+++||+++|||||||++|
T Consensus 194 ~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve 273 (555)
T 3n0f_A 194 QVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIE 273 (555)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHH
T ss_pred HHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred HHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHH
Q 009848 244 VYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNE 323 (524)
Q Consensus 244 ~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~e 323 (524)
||||++ |++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|
T Consensus 274 ~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e 352 (555)
T 3n0f_A 274 SFYWAV-GVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINE 352 (555)
T ss_dssp HHHHHH-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhh
Q 009848 324 AEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVL 403 (524)
Q Consensus 324 i~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~ 403 (524)
++.++.+.+|.++++|++++|+++++||++||+|+.+||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.
T Consensus 353 ~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~ 432 (555)
T 3n0f_A 353 IAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQ 432 (555)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcc
Confidence 98876666566999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHH
Q 009848 404 KVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLL 483 (524)
Q Consensus 404 ~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~ 483 (524)
++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+|| ++|++++++|++|+
T Consensus 433 ~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~ 511 (555)
T 3n0f_A 433 KYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMN-KEKLGGSLFAKPFV 511 (555)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSSCHHHH
T ss_pred cchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999889999999
Q ss_pred HHHHHHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcC
Q 009848 484 GPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 523 (524)
Q Consensus 484 ~~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~ 523 (524)
++++|+||++++||+++ ||||.|+. ||++|++||++|||
T Consensus 512 ~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 512 ETAINLARQSHCTYHNG-DAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHSCCC----CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999999 99999965 99999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=6.4e-153 Score=1248.60 Aligned_cols=511 Identities=32% Similarity=0.559 Sum_probs=491.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC-----CC-CCChhhh
Q 009848 9 QTIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG-----SD-SDNLYTV 81 (524)
Q Consensus 9 ~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~-~~-----~~-~~dl~~~ 81 (524)
....+.++++++.||++||+|+.+. .|++++|+|||+||||||+|||++||+++|+++|+. .. .. ..||++|
T Consensus 23 ~~~~~~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~ 101 (543)
T 2ong_A 23 DYKEDKHVIRASELVTLVKMELEKE-TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYST 101 (543)
T ss_dssp SSCSTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHH
Confidence 3445689999999999999999874 589999999999999999999999999999999985 11 11 4699999
Q ss_pred HHHHHHhhhcCcccchhhhhccccccccccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh-cCCCc
Q 009848 82 SLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-VISNN 160 (524)
Q Consensus 82 al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~-~~~~~ 160 (524)
||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++|||+|||||+.||++||++++.+ +.+++
T Consensus 102 al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~ 181 (543)
T 2ong_A 102 SLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGD 181 (543)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSH
T ss_pred HHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876 43678
Q ss_pred HHHHHHHHccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHH
Q 009848 161 LAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDR 240 (524)
Q Consensus 161 l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr 240 (524)
|+++|+|||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||+++++||+++||.+++||+|+|
T Consensus 182 l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR 261 (543)
T 2ong_A 182 LLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDR 261 (543)
T ss_dssp HHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCC
T ss_pred HHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998779999999
Q ss_pred HHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHH
Q 009848 241 MVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGV 320 (524)
Q Consensus 241 ~ve~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~ 320 (524)
+++||||++ |++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++
T Consensus 262 ~ve~Yfw~~-a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~ 340 (543)
T 2ong_A 262 LVECYFWNT-GIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNF 340 (543)
T ss_dssp HHHHHHTHH-HHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHH
Q 009848 321 YNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFE 400 (524)
Q Consensus 321 ~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e 400 (524)
++|++.++.+.+++++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|+++++++++++||+.+|+++++
T Consensus 341 ~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e 420 (543)
T 2ong_A 341 VDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVD 420 (543)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999887777777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh-hccCCCC
Q 009848 401 WVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEL-LNLIAMP 479 (524)
Q Consensus 401 ~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~-l~~~~~p 479 (524)
|+.++|++++++++++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+|| +++ ++++++|
T Consensus 421 ~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln-~e~~l~~~~vp 499 (543)
T 2ong_A 421 SLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMN-AERVSKDSPFG 499 (543)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH-HHHTCSSCSSC
T ss_pred HhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999 9988999
Q ss_pred hhHHHHHHHHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcC
Q 009848 480 LPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 523 (524)
Q Consensus 480 ~~~~~~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~ 523 (524)
++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 500 ~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 500 KDFIGCAVDLGRMAQLMYHNG-DGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC-STTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHeehhheeCC-CCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999999999999 99999965 99999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.4e-152 Score=1243.65 Aligned_cols=509 Identities=34% Similarity=0.625 Sum_probs=476.6
Q ss_pred cchhHHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhcc----CC--CCCChhhhHHH
Q 009848 11 IDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDL----GS--DSDNLYTVSLR 84 (524)
Q Consensus 11 ~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~----~~--~~~dl~~~al~ 84 (524)
..+.+.++++.||++||+|+.+. .|++++|+|||+||||||+|||++||+++|+++|+.. .. ...||++|||+
T Consensus 29 ~~~~~~~~~~~Lk~~V~~~~~~~-~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~ 107 (549)
T 1n1b_A 29 TEERHLDRKAELIVQVRILLKEK-MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALG 107 (549)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcc-cCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhh
Confidence 45679999999999999999864 5899999999999999999999999999999999851 11 14799999999
Q ss_pred HHHhhhcCcccchhhhhccccccc-cccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh---cCCCc
Q 009848 85 FRLLRQQRVKISCDVFEKFKDDEG-KFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR---VISNN 160 (524)
Q Consensus 85 FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~---~~~~~ 160 (524)
|||||||||+||||||++|||++| +|++++++||+||||||||||+++|||+|||||+.||++||++++.+ +.+++
T Consensus 108 FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~ 187 (549)
T 1n1b_A 108 FRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDEN 187 (549)
T ss_dssp HHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHH
T ss_pred hhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999875 32578
Q ss_pred HHHHHHHHccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHH
Q 009848 161 LAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDR 240 (524)
Q Consensus 161 l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr 240 (524)
|+++|+|||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+++||+|||
T Consensus 188 l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR 267 (549)
T 1n1b_A 188 LLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDR 267 (549)
T ss_dssp HHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCC
T ss_pred HHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998779999999
Q ss_pred HHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHH
Q 009848 241 MVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGV 320 (524)
Q Consensus 241 ~ve~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~ 320 (524)
+++||||++ |++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++
T Consensus 268 ~ve~Yfw~~-a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~ 346 (549)
T 1n1b_A 268 LVESFFWAV-GMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNY 346 (549)
T ss_dssp HHHHHHHHH-HHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHH-H
Q 009848 321 YNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEV-F 399 (524)
Q Consensus 321 ~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~-~ 399 (524)
++|++.++.+.+++++++|++++|++++++|++||+|+.+||+||+||||++|.+|+|+++++++++++||+.+|+++ +
T Consensus 347 ~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~ 426 (549)
T 1n1b_A 347 ISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVI 426 (549)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHH
Confidence 999998877776779999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCC
Q 009848 400 EWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMP 479 (524)
Q Consensus 400 e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p 479 (524)
+|+.++|+++++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++||+++||++| +++++++++|
T Consensus 427 e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln-~e~l~~~~vp 505 (549)
T 1n1b_A 427 DSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMN-TAIAAGYPFP 505 (549)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHTCCSSC
T ss_pred hhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999988999
Q ss_pred hhHHHHHHHHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcC
Q 009848 480 LPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 523 (524)
Q Consensus 480 ~~~~~~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~ 523 (524)
++|+++++|+||+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 506 ~~~~~~~~n~~R~~~~~Y~~~-Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 506 DGMVAGAANIGRVAQFIYLHG-DGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS-CCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHeeehheeCC-CCCCCCcHHHHHHHHHHhcCCCC
Confidence 999999999999999999999 99999975 99999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3.9e-152 Score=1245.44 Aligned_cols=510 Identities=34% Similarity=0.575 Sum_probs=466.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHH-hccCCCCCChhhhHHHHHHh
Q 009848 10 TIDTTTQEQYDALKQEVRRMITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLA-NDLGSDSDNLYTVSLRFRLL 88 (524)
Q Consensus 10 ~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~-~~~~~~~~dl~~~al~FRlL 88 (524)
...+.++++++.||++||+|+.+. .|++++|+|||+||||||+|||++||+++|+++| +.......||++|||+||||
T Consensus 57 ~~~~~~~~~~~~Lk~~Vr~~~~~~-~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~Dl~~~al~FRlL 135 (569)
T 2j5c_A 57 YKEEKHLMRAAGMIDQVKMMLQEE-VDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLL 135 (569)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCSCTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCcccCChhhhhHHhHHH
Confidence 344578999999999999999874 5899999999999999999999999999999999 74222457999999999999
Q ss_pred hhcCcccchhhhhccccccc-cccccccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhcCCCcHHHHHHH
Q 009848 89 RQQRVKISCDVFEKFKDDEG-KFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQH 167 (524)
Q Consensus 89 R~~Gy~vS~dvf~~F~d~~g-~F~~~~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~~~~~~l~~~V~~ 167 (524)
|||||+||||||++|||++| +|++++++||+|||||||||||++|||+|||||+.||++||+++++++.+++|+++|+|
T Consensus 136 R~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~ 215 (569)
T 2j5c_A 136 RQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIER 215 (569)
T ss_dssp HHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHH
T ss_pred HhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999876436789999999
Q ss_pred HccCCccCCcchhHHHhhHHhhcCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHH
Q 009848 168 ALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFW 247 (524)
Q Consensus 168 aL~~P~~~~~~rlear~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~yf~ 247 (524)
||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+++||+|+|+++||||
T Consensus 216 aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw 295 (569)
T 2j5c_A 216 ALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYW 295 (569)
T ss_dssp HHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHH
T ss_pred HhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987799999999999999
Q ss_pred HhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHH
Q 009848 248 TLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 327 (524)
Q Consensus 248 a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~ 327 (524)
++ |++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.+
T Consensus 296 ~~-a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~ 374 (569)
T 2j5c_A 296 TT-GVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYD 374 (569)
T ss_dssp HH-HHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhH
Q 009848 328 LAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPK 407 (524)
Q Consensus 328 ~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~ 407 (524)
+.+.+++++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|+
T Consensus 375 ~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~ 454 (569)
T 2j5c_A 375 TLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHD 454 (569)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHH
Confidence 77777779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHH
Q 009848 408 IITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVL 487 (524)
Q Consensus 408 l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~ 487 (524)
+++++++++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+|| ++|++ +++|++|+++++
T Consensus 455 i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln-~e~l~-~~vp~~~~~~~~ 532 (569)
T 2j5c_A 455 IVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN-KEMMT-SSFSKYFVEVSA 532 (569)
T ss_dssp HHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHH-HHHHH-CCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHhc-cCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999 899999999999
Q ss_pred HHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcC
Q 009848 488 NLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVT 523 (524)
Q Consensus 488 N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~ 523 (524)
|+||+++++|+++.||||.|+. ||++|++||++|||
T Consensus 533 nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 533 NLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999876699999965 99999999999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=5.9e-142 Score=1193.69 Aligned_cols=484 Identities=31% Similarity=0.536 Sum_probs=455.1
Q ss_pred hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC--------CCCCChhhhHHHHHHhhhcCcccchhhhhccc
Q 009848 34 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 104 (524)
Q Consensus 34 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~ 104 (524)
|.|++++|++||+||||||+|||++||+++|+++|+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 5789999999999999999999999999999999985 11 11469999999999999999999999999999
Q ss_pred ccccccccc---ccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh--cCCCcHHHHHHHHccCCccCCcch
Q 009848 105 DDEGKFKAS---MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPR 179 (524)
Q Consensus 105 d~~g~F~~~---~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~r 179 (524)
|++|+|+++ +.+|++||||||||||+++|||+|||||+.||++||++++.+ ..+++|++||+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 999999974 689999999999999999999999999999999999998863 226789999999999999999999
Q ss_pred hHHHhhHHhhcCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHH
Q 009848 180 LEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFW 247 (524)
Q Consensus 180 lear~yi~~y~~~~~------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~ve~yf~ 247 (524)
+|||+||++|++++. +|++||||||||||+||++||+||++++||||++|+. ++||+|||++|||||
T Consensus 403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~-~l~faRdr~ve~Yfw 481 (764)
T 3p5p_A 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYFS 481 (764)
T ss_dssp HHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-TTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCC-cCccHHHHHHHHHHH
Confidence 999999999998865 4999999999999999999999999999999999995 899999999999999
Q ss_pred HhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHH
Q 009848 248 TLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEE 327 (524)
Q Consensus 248 a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~ 327 (524)
++ | |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.+
T Consensus 482 ~~-~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 482 SA-T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp TC-C--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-h--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99 8 99999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHH-hCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchh
Q 009848 328 LAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVP 406 (524)
Q Consensus 328 ~~~-~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p 406 (524)
+.+ +|+ ++++|++++|++++++|++||+|+.+||+||+||||+||.+|+|++++++.+++++|+.+|+++++|+..+|
T Consensus 559 ~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 559 VVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTS
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhH
Confidence 655 676 999999999999999999999999999999999999999999999999999999999999999999976669
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhc-cCCCChhHHH
Q 009848 407 KIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLN-LIAMPLPLLG 484 (524)
Q Consensus 407 ~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~-gvS~eeA~~~i~~~i~~~wk~ln~~e~l~-~~~~p~~~~~ 484 (524)
+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+|| ++|++ ++++|++|++
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln-~e~l~~~~~~p~~~~~ 716 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEAS-FEYFKPSNDIPMGCKS 716 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSSSCHHHHH
T ss_pred HHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHhhCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999 79999999999999999999999 99997 7889999999
Q ss_pred HHHHHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 009848 485 PVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 524 (524)
Q Consensus 485 ~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~~ 524 (524)
+++|+||++++||+++ ||||.|+. ||++|+++|++||++
T Consensus 717 ~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 717 FIFNLRLCVQIFYKFI-DGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHTHHHHHHHSCC--------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999999999 99999976 999999999999985
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.9e-142 Score=1204.77 Aligned_cols=487 Identities=34% Similarity=0.597 Sum_probs=454.6
Q ss_pred hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC--------CCCCChhhhHHHHHHhhhcCcccchhhhhccc
Q 009848 34 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 104 (524)
Q Consensus 34 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~ 104 (524)
|.|++++|++||+||||||+|||++||+++|+++|+. .. ....||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 5789999999999999999999999999999999985 11 11469999999999999999999999999999
Q ss_pred cccccccccc---cccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh---c----CCCcHHHHHHHHccCCcc
Q 009848 105 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR---V----ISNNLAEQIQHALRLPLR 174 (524)
Q Consensus 105 d~~g~F~~~~---~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~---~----~~~~l~~~V~~aL~~P~~ 174 (524)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++++.+ + .+++|++||+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999864 69999999999999999999999999999999999998753 1 136799999999999999
Q ss_pred CCcchhHHHhhHHhhcCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHH
Q 009848 175 KALPRLEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242 (524)
Q Consensus 175 ~~~~rlear~yi~~y~~~~~------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~v 242 (524)
+++||+|||+||++|++++. +|++||||||||||+||++||+||++++||||++|+. ++||+|||++
T Consensus 455 ~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~v 533 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPL 533 (817)
T ss_dssp TCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGG-GCTTSCCCHH
T ss_pred ccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCC-cCccHHHHHH
Confidence 99999999999999998875 4999999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHH
Q 009848 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYN 322 (524)
Q Consensus 243 e~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ 322 (524)
|||||++ |++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++
T Consensus 534 e~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 534 EFYFLVA-AGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHHH-TTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHH-HHHHHHHhcCCCCCHHHHHH
Q 009848 323 EAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLP-VVTASFLDMGDIATKEVFEW 401 (524)
Q Consensus 323 ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~-~~~~~~~~~g~~lp~e~~e~ 401 (524)
|++.++.+.+|.++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++.++++++|+.+|+++++|
T Consensus 613 e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~ 692 (817)
T 3sdr_A 613 EVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEK 692 (817)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHT
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhc
Confidence 99887655544599999999999999999999999999999999999999999999999 88899999999999999999
Q ss_pred hh--chhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCC
Q 009848 402 VL--KVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLNLIAM 478 (524)
Q Consensus 402 ~~--~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~-gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~ 478 (524)
+. +.|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+|| ++|++++++
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln-~e~l~~~~~ 771 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELT-REFLKPDDV 771 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH-HHHHSCCSS
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence 75 456999999999999999999999999999999999999999 79999999999999999999999 999998899
Q ss_pred ChhHHHHHHHHhhhhhhhcccCCCCCCCChh-HHHHHHHhhcCCcCC
Q 009848 479 PLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQVALVLKDPVTF 524 (524)
Q Consensus 479 p~~~~~~~~N~aR~~~~~Y~~~~Dg~t~~~~-~k~~I~~ll~~Pi~~ 524 (524)
|++|+++++|+||++++||+++ ||||.|+. ||++|+++|++|||+
T Consensus 772 p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 772 PFACKKMLFEETRVTMVIFKDG-DGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSC-CSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999 99999965 999999999999986
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=6.8e-142 Score=1196.11 Aligned_cols=484 Identities=32% Similarity=0.563 Sum_probs=458.2
Q ss_pred hhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cC--------CCCCChhhhHHHHHHhhhcCcccchhhhhccc
Q 009848 34 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG--------SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFK 104 (524)
Q Consensus 34 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~-~~--------~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~ 104 (524)
|.|++++|++||+||||||+|||++||+++|+++|++ .. ....||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5789999999999999999999999999999999985 11 11369999999999999999999999999999
Q ss_pred cccccccccc---cccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhh-------cCCCcHHHHHHHHccCCcc
Q 009848 105 DDEGKFKASM---INNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR-------VISNNLAEQIQHALRLPLR 174 (524)
Q Consensus 105 d~~g~F~~~~---~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~-------~~~~~l~~~V~~aL~~P~~ 174 (524)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++++.+ ..+++|++||+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999865 79999999999999999999999999999999999998753 1267899999999999999
Q ss_pred CCcchhHHHhhHHhhcCCCc------------CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhHHHHHH
Q 009848 175 KALPRLEARYYLNMYSRDDL------------HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMV 242 (524)
Q Consensus 175 ~~~~rlear~yi~~y~~~~~------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~~aRdr~v 242 (524)
+++||+|||+||++|++++. +|++||||||||||+||++||+||++++|||+++|+. ++||+|||++
T Consensus 427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~-~l~faRdr~v 505 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRERVT 505 (785)
T ss_dssp GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCSSSCCCHH
T ss_pred cCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCC-cCccHHHHHH
Confidence 99999999999999998875 4999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHH
Q 009848 243 EVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYN 322 (524)
Q Consensus 243 e~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ 322 (524)
|||||++ |++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++
T Consensus 506 e~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 506 EIYFSPA-SFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHHH-HHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHH
Q 009848 323 EAEEELAK-QGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEW 401 (524)
Q Consensus 323 ei~~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~ 401 (524)
|++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++++++++|+.+|+++++|
T Consensus 585 ei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~ 663 (785)
T 3s9v_A 585 DIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTT
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhc
Confidence 99877655 676 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCh
Q 009848 402 VLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH-VVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPL 480 (524)
Q Consensus 402 ~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~-gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~ 480 (524)
+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+|| ++|++++ +|+
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln-~e~l~~~-~p~ 741 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELN-REFVNNK-IPD 741 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHSC-CCH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCC-CCH
Confidence 76669999999999999999999999999999999999999999 89999999999999999999999 9999988 999
Q ss_pred hHHHHHHHHhhhhhhhcccCCCCCCCChh--HHHHHHHhhcCCcC
Q 009848 481 PLLGPVLNLARMSEFIYEDGVDRYTNSYK--MKDQVALVLKDPVT 523 (524)
Q Consensus 481 ~~~~~~~N~aR~~~~~Y~~~~Dg~t~~~~--~k~~I~~ll~~Pi~ 523 (524)
+|+++++|+||++++||+++ ||||.|+. ||++|+++|++||.
T Consensus 742 ~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 742 IYKRLVFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-C----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999 99999964 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1e-106 Score=899.90 Aligned_cols=449 Identities=21% Similarity=0.323 Sum_probs=387.5
Q ss_pred HHHHHHHHHHHHHHHhh----chhchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc--cC-------CCCCChhhhH
Q 009848 16 QEQYDALKQEVRRMITS----AVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND--LG-------SDSDNLYTVS 82 (524)
Q Consensus 16 ~~~~~~lk~~v~~~l~~----~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~--~~-------~~~~dl~~~a 82 (524)
.+..+-|+..|+++... .|.|++++|++||+||||||+|||++||+++|+++|+. .. ....||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 45667788888887543 25799999999999999999999999999999999985 11 1246999999
Q ss_pred HHHHHhhhcCcccchhhhhcccccccccccc---ccccchhhhhHHHhhcccccCchHHHHHHHHHHHHHHhHhhhc---
Q 009848 83 LRFRLLRQQRVKISCDVFEKFKDDEGKFKAS---MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRV--- 156 (524)
Q Consensus 83 l~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~---~~~d~~glL~Ly~As~l~~~gE~iL~ea~~fs~~~L~~~~~~~--- 156 (524)
|+|||||||||+||||||++|+ ++|+|++. ..+|++||||||||||+++|||+|||||+.||++||++.+.+.
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 88999853 4689999999999999999999999999999999999987531
Q ss_pred ----CCCcHHHHHHHHccCCccCCcchhHHHhhHHhhcCCCc-------------CcHHHHHHHHhchHHHHHhhHHHHH
Q 009848 157 ----ISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDL-------------HDETLLKFAKLDFNLLQAAHQKELS 219 (524)
Q Consensus 157 ----~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~-------------~n~~lL~lAkldFn~~Q~~hq~El~ 219 (524)
.+++|+++|+|||++|||+++||+|||+||++|+++++ +|+.||||||+|||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 14789999999999999999999999999999997654 6999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhhcC
Q 009848 220 DMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWD 299 (524)
Q Consensus 220 ~lsrW~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~rWd 299 (524)
+++||||++||. +|||+|||++|||||++ |++|||+||.+|+++||.+++++++||+||+|| |||+.||+||+|||
T Consensus 459 ~lsrWwk~~~l~-~l~faRdr~ve~Yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd 534 (727)
T 3pya_A 459 IFQKWYEENRLS-EWGVRRSELLECYYLAA-ATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYI 534 (727)
T ss_dssp HHHHHHHHTTGG-GGTCCHHHHHHHHHHHH-TTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC
T ss_pred hhheeHHhcCcc-cCCchhhHHHHHHHHHH-hccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcc
Confidence 999999999995 69999999999999999 999999999999999999999999999999999 99999999999999
Q ss_pred CC---------CcCC---CChh--HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 009848 300 TN---------VTDT---LPAC--MKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPS 365 (524)
Q Consensus 300 ~~---------~~~~---lPe~--mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt 365 (524)
.+ +++. +|+| ||+||.|+++++||++.++.+.+|.++.+|++++|.++++++++||+ +
T Consensus 535 ~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~------- 606 (727)
T 3pya_A 535 ANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E------- 606 (727)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C-------
T ss_pred cccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c-------
Confidence 74 3332 3877 89999999999999987644443449999999999999999999997 2
Q ss_pred HHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcC
Q 009848 366 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH 445 (524)
Q Consensus 366 ~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~ 445 (524)
+| |. +++.++.+..|..+++ ++.. +.+..|.++++.++||+||+.+|++|+
T Consensus 607 -~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~---------------- 657 (727)
T 3pya_A 607 -GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE---------------- 657 (727)
T ss_dssp -CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH----------------
T ss_pred -cc---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH----------------
Confidence 33 11 4444444445888887 6544 556669999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhHHHhhccC--CCChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHHHHHHhhcCCcC
Q 009848 446 VVSEEEAEKALWLEIANGWKDLNYEELLNLI--AMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVT 523 (524)
Q Consensus 446 gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~--~~p~~~~~~~~N~aR~~~~~Y~~~~Dg~t~~~~~k~~I~~ll~~Pi~ 523 (524)
++++.+.|+..|++++ +.|++++ .+|++| |+.+|++.||.. ||++|+ |..+|.++|++|+.
T Consensus 658 -------~~~~~~~IE~~mqEL~-~lVl~~~~~~ip~~~-----tf~~V~ksFYy~---ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 658 -------KEKTIKSMEKEMGKMV-ELALSESDTFRDVSI-----TFLDVAKAFYYF---ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp -------HHHHHHHHHHHHHHHH-HHHHSCCTTTHHHHH-----HHHHHHHHHHHH---HHHTTS-CHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHHHHHHHHH-HHHhccCCCCCCCcc-----cHHHHHHHHHhh---hcCCHH-HHHHHHHHHcCccc
Confidence 5588999999999999 9999864 699999 999999999984 899999 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=6.5e-51 Score=420.33 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=226.3
Q ss_pred HHhhHHHHHHHH-HHHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccC--CCHH
Q 009848 211 QAAHQKELSDMT-RWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAY--GTFE 286 (524)
Q Consensus 211 Q~~hq~El~~ls-rW~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl-~~ak~~~l~~v~DD~fD~~--gt~e 286 (524)
++.|.+|++..+ +||+++|+.+ .+++|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||.+ ||++
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~e 92 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADL-ASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPE 92 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHH-HHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHH
Confidence 345777887766 6999999975 5999999999999999 8899999999999 9999999999999999998 6999
Q ss_pred HHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCC-C
Q 009848 287 ELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVP-S 365 (524)
Q Consensus 287 El~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iP-t 365 (524)
|++.|++++.+|+.+ .+|+++++++.++.+++++++... ++...++++++|++|++++++||+|+.+|++| |
T Consensus 93 e~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s 165 (337)
T 1ps1_A 93 DTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDS 165 (337)
T ss_dssp HHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999864 479999999999999999997542 33567899999999999999999999999999 9
Q ss_pred HHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcC
Q 009848 366 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQH 445 (524)
Q Consensus 366 ~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~ 445 (524)
++||+++|++|+|++++++++++++|..+|+++++. +..++|.++++.++||+|||+||+||+++|+++|+|.|||+++
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999999987766 4556899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 009848 446 VVSEEEAEKALWLEIANGWKDLNYEEL 472 (524)
Q Consensus 446 gvS~eeA~~~i~~~i~~~wk~ln~~e~ 472 (524)
|+|+|+|++++.++++++||++| ++.
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~-~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYL-LLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999 877
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.3e-49 Score=401.90 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=221.8
Q ss_pred hhHHHHHHHH-HHHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccCCCHHHHHH
Q 009848 213 AHQKELSDMT-RWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTFEELTL 290 (524)
Q Consensus 213 ~hq~El~~ls-rW~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl-~~ak~~~l~~v~DD~fD~~gt~eEl~~ 290 (524)
-|.+|++..+ +||+++|+. ..+++|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEV-TCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHH-HHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchh-hhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 3677888777 488999997 46999999999999888 7888899999999 999999999999999999 78999999
Q ss_pred HHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhh
Q 009848 291 FTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYK 370 (524)
Q Consensus 291 ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl 370 (524)
|++++.+|+.+ +.+|+++++++.++++++++++.... .+.++.|+.++++++ ||+|+.+|++||++|||
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999875 46899999999999999999976552 256677999999997 89999999999999999
Q ss_pred hhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CCchhhHHH
Q 009848 371 SVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH--------IPSAVECYM 442 (524)
Q Consensus 371 ~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~cyM 442 (524)
++|++|+|+++++.++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 999999999999999999999999999998 459999999999999999999999999999 779999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 009848 443 KQHVVSEEEAEKALWLEIANGWKDLNYEEL 472 (524)
Q Consensus 443 ke~gvS~eeA~~~i~~~i~~~wk~ln~~e~ 472 (524)
+++|+|+|+|++++.++++++||++| +..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~-~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHD-EIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999 865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=1e-47 Score=393.70 Aligned_cols=244 Identities=15% Similarity=0.153 Sum_probs=219.4
Q ss_pred HHhhHHHHHHHHH-HHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccCCCHHHH
Q 009848 211 QAAHQKELSDMTR-WWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTFEEL 288 (524)
Q Consensus 211 Q~~hq~El~~lsr-W~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl-~~ak~~~l~~v~DD~fD~~gt~eEl 288 (524)
...|.+|++..+. ||+++|+... +++|+|++++|||.+ +++++|+++.+|+ ++||+++|+|++||+||. |+++|+
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~-~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~ 101 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRV-TCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEG 101 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHH-HHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhh-HhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhH
Confidence 3457778888774 8899999755 999999999999888 7888899999999 999999999999999999 789999
Q ss_pred HHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Q 009848 289 TLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEE 368 (524)
Q Consensus 289 ~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eE 368 (524)
+.|++++.+|+.+ +.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++|
T Consensus 102 ~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~ee 170 (320)
T 3bny_A 102 SAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGG 170 (320)
T ss_dssp HHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHH
T ss_pred HHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHH
Confidence 9999999999864 4689999999999999999997654 2 24455566677 5999999999999999999
Q ss_pred hhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcCC--------CCchhhH
Q 009848 369 YKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH--------IPSAVEC 440 (524)
Q Consensus 369 Yl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~c 440 (524)
|+.+|++|+|+++++.++++++|..+|+++++. .|+|+++++.++||+|||+||+||+++|+ ++|+|.|
T Consensus 171 Yl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~ 247 (320)
T 3bny_A 171 YLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQI 247 (320)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHH
Confidence 999999999999999999999999999999984 59999999999999999999999999998 7899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 009848 441 YMKQHVVSEEEAEKALWLEIANGWKDLNYEEL 472 (524)
Q Consensus 441 yMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~ 472 (524)
||+++|+|+|+|++++.+++++.|++++ +..
T Consensus 248 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~-~l~ 278 (320)
T 3bny_A 248 LAQEADVTAEAAKRVLFVMCREWELRHQ-LLV 278 (320)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999 765
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=3.4e-46 Score=392.41 Aligned_cols=242 Identities=12% Similarity=0.008 Sum_probs=220.8
Q ss_pred HHHHHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhccc--CC-CHHHHHHHHHHhh
Q 009848 221 MTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDA--YG-TFEELTLFTEAVK 296 (524)
Q Consensus 221 lsrW~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl-~~ak~~~l~~v~DD~fD~--~g-t~eEl~~ft~ai~ 296 (524)
+.+||+++|+.. -+++|+|+++++||.+ +++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.+++++.
T Consensus 66 ~~~W~~~~gl~~-~~~~r~r~~~~~~~~l-aa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~ 143 (382)
T 3kb9_A 66 TRTWLLEKRLMP-ADKVEEYADGLCYTDL-MAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHTTSSC-HHHHHHHHHHHCHHHH-HHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CHHHHHHHHhCCHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 457999999964 3899999999999999 8899999999999 999999999999999996 56 9999999999998
Q ss_pred hcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhc
Q 009848 297 RWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRS 376 (524)
Q Consensus 297 rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S 376 (524)
++-.. ...+|+++++++.++.+++++++..+. +...++|+++|++|+++|++||+|+.+|++||++|||++|++|
T Consensus 144 ~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~----~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s 218 (382)
T 3kb9_A 144 TALDS-PGDHLHHEDTLVAGFADSVRRLYAFLP----ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLT 218 (382)
T ss_dssp HHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHhcC-CCCCCCCCChHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Confidence 85211 223588999999999999999974322 2347799999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHH
Q 009848 377 IAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKAL 456 (524)
Q Consensus 377 ~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i 456 (524)
+|+.+++.++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++
T Consensus 219 ~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v 297 (382)
T 3kb9_A 219 FAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEV 297 (382)
T ss_dssp TTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999887 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHH
Q 009848 457 WLEIANGWKDLNYEE 471 (524)
Q Consensus 457 ~~~i~~~wk~ln~~e 471 (524)
++||+++||+|| +.
T Consensus 298 ~~~i~~~~k~~~-~~ 311 (382)
T 3kb9_A 298 RRRVEECITEFL-AV 311 (382)
T ss_dssp HHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHH-HH
Confidence 999999999999 74
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=1.4e-33 Score=299.94 Aligned_cols=246 Identities=15% Similarity=0.121 Sum_probs=188.3
Q ss_pred HHHHH-HHHHHHcCCCCCChhHHHHHHHHHHHHhhccccCCCc-cchhH-HHHHHHHHHHhhhhh-cccCC-CHHH-HHH
Q 009848 217 ELSDM-TRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKY-TFGRI-LVSKIICLISLIDDT-FDAYG-TFEE-LTL 290 (524)
Q Consensus 217 El~~l-srW~~~~~l~~~l~~aRdr~ve~yf~a~~a~~feP~~-s~~Rl-~~ak~~~l~~v~DD~-fD~~g-t~eE-l~~ 290 (524)
|++.- ..|..++++... +..|+++..+.|..+ +++..|.. +..|+ +++||++|+|++||+ +|..| +.+. ...
T Consensus 130 ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~ll-aa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~ 207 (433)
T 3v1v_A 130 EVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRY-MVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGR 207 (433)
T ss_dssp HHHHHHHHHHHHTSCCCC-----CCSCHHHHHHH-HHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHH
Confidence 55544 469999876422 456778888888554 44445999 79999 999999999999999 59755 3322 112
Q ss_pred HHH---HhhhcCCCCcCCCCh-----hHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCC
Q 009848 291 FTE---AVKRWDTNVTDTLPA-----CMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGY 362 (524)
Q Consensus 291 ft~---ai~rWd~~~~~~lPe-----~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~ 362 (524)
+.. ++..... ..+.-|. .-.++..+++++++++.... .+...++++++|++|+++|++||+|+.+|+
T Consensus 208 l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a----~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 208 LLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAA----TPSQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222 2222111 0110110 01246789999999997542 224577999999999999999999999999
Q ss_pred CCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccchhhhhhcC-CCCchhhHH
Q 009848 363 VPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRG-HIPSAVECY 441 (524)
Q Consensus 363 iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG-~~~n~V~cy 441 (524)
+||++|||++|++| |+.+++.++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++| +++|+|.||
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~ 360 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVI 360 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHH
Confidence 99999999999999 777777888999999999998877 566779999999999999999999999995 788999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhHHHh
Q 009848 442 MKQHVVSEEEAEKALWLEIANGWKDLNYEEL 472 (524)
Q Consensus 442 Mke~gvS~eeA~~~i~~~i~~~wk~ln~~e~ 472 (524)
|+++|+|+|+|++++.+|++++++++. +..
T Consensus 361 mke~g~S~eeA~~~v~~~i~~~~~~F~-~~~ 390 (433)
T 3v1v_A 361 AEREQLCERDAYLKAVEVHNELQHSFE-AAA 390 (433)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999998 543
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.77 E-value=2.6e-18 Score=179.17 Aligned_cols=244 Identities=14% Similarity=0.065 Sum_probs=177.2
Q ss_pred HHHHHHHHHcC------------CCCCChhHHHHHHHHHHHHhhccccCCCccchhH-HHHHHHHHHHhhhhhcccCCCH
Q 009848 219 SDMTRWWKDLD------------IPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI-LVSKIICLISLIDDTFDAYGTF 285 (524)
Q Consensus 219 ~~lsrW~~~~~------------l~~~l~~aRdr~ve~yf~a~~a~~feP~~s~~Rl-~~ak~~~l~~v~DD~fD~~gt~ 285 (524)
.+..+|..+.| +. --+...+++..+-.|++ +.. .|..+...+ .++++.+|+|++||.+|..+
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~la-ar~-YP~a~~e~l~liad~~~~~F~lDD~~d~~~-- 107 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMV-VYS-WAKVSKECMADLSIHYTYTLVLDDSKDDPY-- 107 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHH-HHH-STTSCHHHHHHHHHHHHHHHHHTTCCSCSH--
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHH-hhc-CCCCCHHHHHHHHHHHHHHHhhcccccCcH--
Confidence 34447888888 53 22566778888888866 555 499999888 99999999999999999754
Q ss_pred HHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 009848 286 EELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPS 365 (524)
Q Consensus 286 eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt 365 (524)
+++..|.+.+-+ +.. |+ .++..++.+.+.++. ...++.+..++.++|.+|+.+++.|+.. .+..|+
T Consensus 108 ~~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~----~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~ 173 (374)
T 1yyq_A 108 PTMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVL----RHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPG 173 (374)
T ss_dssp HHHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTT
T ss_pred HHHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCC
Confidence 667777776654 211 11 155666666666654 3345567889999999999999999873 677899
Q ss_pred HHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHH---HhhchhHHHHHHHHHHHHhcCccchhhhhh-cCCCCchhhHH
Q 009848 366 VEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFE---WVLKVPKIITASENICRLLDDVASHKFEQK-RGHIPSAVECY 441 (524)
Q Consensus 366 ~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e---~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~-rG~~~n~V~cy 441 (524)
.++|...++.++|+.-.... ..+|+..+. ..+....++.....++.|+|||.||.||.. .|+.+|+|.++
T Consensus 174 ~~~Y~~~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl 247 (374)
T 1yyq_A 174 SHDYPQFLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNY 247 (374)
T ss_dssp CTTHHHHHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhe
Confidence 99999988888887543322 223333221 012234466667779999999999999998 49999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhh
Q 009848 442 MKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 491 (524)
Q Consensus 442 Mke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR 491 (524)
+.++|+|.++|++++..++..+..++. .. +. ...|. +++.+-+..|
T Consensus 248 ~~~~g~S~~eAl~~v~~~~~~~~~r~~-~~-L~-~~~~~-~l~al~~~ir 293 (374)
T 1yyq_A 248 VVSDEISLHEALEKLTQDTLHSSKQMV-AV-FS-DKDPQ-VMDTIECFMH 293 (374)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHH-HH-HS-SSCHH-HHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHH-HH-hc-cCCHH-HHHHHHHHHh
Confidence 999999999999999999998888876 53 32 22332 4444444444
No 17
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=88.87 E-value=19 Score=35.43 Aligned_cols=187 Identities=11% Similarity=0.101 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHhhhhhcccCC-C-HHHHHHHHHHhhh-cCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcchH
Q 009848 262 RILVSKIICLISLIDDTFDAYG-T-FEELTLFTEAVKR-WDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIP 338 (524)
Q Consensus 262 Rl~~ak~~~l~~v~DD~fD~~g-t-~eEl~~ft~ai~r-Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~ 338 (524)
|-.+.-+-.|.=.+||+-|... . ...|+.+-+.+++ ..+. |. .+++.+|..++.+.. -.
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~---------l~-- 102 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN---------LP-- 102 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT---------CC--
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC---------CC--
Confidence 4433446667778999999643 2 3445555555544 2221 21 156777766655432 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHH
Q 009848 339 YAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRL 418 (524)
Q Consensus 339 ~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL 418 (524)
++.+.+++.++.+.. .....+|++|+......+.|.--.+++-.++.. +++.... ....+...-|
T Consensus 103 --~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~-------A~~lG~AlQl 167 (294)
T 4hd1_A 103 --MEPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARL-------SDATCTALQV 167 (294)
T ss_dssp --SHHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHH-------HHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHH-------HHHHHHHHHH
Confidence 234455666766443 334568988888877777665544444444332 2332222 1222333333
Q ss_pred hcCccchhhhhhcCCCCchhhHHHhcCCCCHHHH---------HHHHHHHHHHHHHHhhHHHhhccCCCChhHH
Q 009848 419 LDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEA---------EKALWLEIANGWKDLNYEELLNLIAMPLPLL 483 (524)
Q Consensus 419 ~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~eeA---------~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~ 483 (524)
.|=+.......++|-+ -+=.-.|.++|+|.++- ..-+..+++.+..-+. +..--...+|..+.
T Consensus 168 tNilRDv~eD~~~gR~-YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 168 ANHMQDIDRDLALGRI-YVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFD-EGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHTHHHHHHTTCB-CSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHH-HHGGGGGSSCHHHH
T ss_pred HHHHHhchhhhccCce-eCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHH
Confidence 3333333344566754 11134678899998762 2224444444443333 32211245776544
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=88.71 E-value=2.5 Score=42.13 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITAS 412 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~ 412 (524)
.+...+.++....+.+-..+..|... .||.++|+..-..-+|.-...+ ...| ++ ..+++..+.+ ..+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~la-g~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTG-GAEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 45566777778888998888888654 3899999987666555543222 2222 12 2355544333 5677778
Q ss_pred HHHHHHhcCccchhhhh-----hcCCCCchhhHHHhcCCC--CHHHHHHHHHHHHHHHHHHhhHHHhhccCCCCh-hHHH
Q 009848 413 ENICRLLDDVASHKFEQ-----KRGHIPSAVECYMKQHVV--SEEEAEKALWLEIANGWKDLNYEELLNLIAMPL-PLLG 484 (524)
Q Consensus 413 ~~i~RL~NDI~S~~kE~-----~rG~~~n~V~cyMke~gv--S~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~-~~~~ 484 (524)
+...-+.||+..+.... ..|.. +...+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +-++
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~--------~lp~~~~~~ 270 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE--------TFRECPARD 270 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT--------TSCCSHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH--------hCCCchHHH
Confidence 88888999998886543 23333 667777655431 144455555555555555544 3664 3455
Q ss_pred HHHHHhhh
Q 009848 485 PVLNLARM 492 (524)
Q Consensus 485 ~~~N~aR~ 492 (524)
...++++.
T Consensus 271 ~L~~l~~~ 278 (295)
T 3ipi_A 271 KLFQITDY 278 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666653
No 19
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=87.55 E-value=23 Score=34.76 Aligned_cols=195 Identities=15% Similarity=0.082 Sum_probs=103.5
Q ss_pred chhHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHhhh-cCCCCc--CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 009848 260 FGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKR-WDTNVT--DTLPACMKFIYNKLLGVYNEAEEELAKQGRSYG 336 (524)
Q Consensus 260 ~~Rl~~ak~~~l~~v~DD~fD~~gt~eEl~~ft~ai~r-Wd~~~~--~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~ 336 (524)
..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++ .++... ..-|+ .++..++..++.+.. -
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~---------l- 105 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKN---------I- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSC---------C-
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhC---------C-
Confidence 45655555777888899999976544447766666654 222110 00022 356777766654421 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHH
Q 009848 337 IPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENIC 416 (524)
Q Consensus 337 ~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~ 416 (524)
-++.+.+++.++.+ +......+|++|+......+.|.--.+++-.+|... .++..+ .....+...
T Consensus 106 ---~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~-------~A~~lG~Al 170 (293)
T 3acx_A 106 ---AFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYD-------VARRLGESL 170 (293)
T ss_dssp ---CHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHH-------HHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHH-------HHHHHHHHH
Confidence 13445666667653 344456789999888888777766655555554322 123222 222222222
Q ss_pred HHhcCccchhhhhhcCCCCchhhHHHhcCCCCHHH---------HHHHHHHHHHHHHHHhhHHHhhccCCCChhHH
Q 009848 417 RLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEE---------AEKALWLEIANGWKDLNYEELLNLIAMPLPLL 483 (524)
Q Consensus 417 RL~NDI~S~~kE~~rG~~~n~V~cyMke~gvS~ee---------A~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~ 483 (524)
-+.|=+........+|-+ -+=.=.|.++|+|.++ ..+-+..++..+..-+. +..--...+|....
T Consensus 171 QltNilRDv~eD~~~gR~-YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~-~a~~~~~~lp~~~r 244 (293)
T 3acx_A 171 QLINILRDVGEDFENERI-YFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFR-DVMDQIKVFSIEAQ 244 (293)
T ss_dssp HHHHHHHCHHHHHHTTCC-CSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHTGGGSCTTHH
T ss_pred HHHHHHHHHHHHHhCCcE-EeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHhHHhCCHHHH
Confidence 333322333344556754 1112356788999876 22345566666665554 33221234665444
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=86.94 E-value=5 Score=41.04 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITAS 412 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~~ 412 (524)
.+...+.+++...+.+-..+..|.... ||.++|+.+-..-+|.....++-. +..| .+++..+.+ ..+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 466778889999999999999997665 999999998666555553332211 1122 455544433 5677788
Q ss_pred HHHHHHhcCccchhhh-----------hhcCCCCchhhHHHhcC
Q 009848 413 ENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 445 (524)
Q Consensus 413 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 445 (524)
+...-+.||+..+.-. ..+|.. ++..+|.-++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888899999887532 233444 6666665444
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=81.94 E-value=24 Score=35.73 Aligned_cols=90 Identities=10% Similarity=-0.129 Sum_probs=59.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHH
Q 009848 332 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKII 409 (524)
Q Consensus 332 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~ 409 (524)
+.+.+...+.++....+.+-..+..|.. +.-||.++|+..-..-+|.....+ ...| ++ ..+++..+.+ -.+-
T Consensus 148 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g 221 (345)
T 3oyr_A 148 NSMKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEAL---RDYG 221 (345)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHH
Confidence 3335667788888899999999988854 345899999998766666543322 2222 12 2455544333 5677
Q ss_pred HHHHHHHHHhcCccchhh
Q 009848 410 TASENICRLLDDVASHKF 427 (524)
Q Consensus 410 ~~~~~i~RL~NDI~S~~k 427 (524)
+..+...-+.||+..+.-
T Consensus 222 ~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 222 LNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 788888899999988854
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=81.26 E-value=20 Score=36.00 Aligned_cols=91 Identities=13% Similarity=-0.079 Sum_probs=60.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh-cCCCCCHHHHHHhhchhHHHH
Q 009848 332 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD-MGDIATKEVFEWVLKVPKIIT 410 (524)
Q Consensus 332 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~lp~e~~e~~~~~p~l~~ 410 (524)
+.+.+...+.++....+.|-..+..|.. +..||.++|+..-..-+|.....++-.-+ ++ ..+++..+.+ ..+-.
T Consensus 130 ~~~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~ 204 (334)
T 3rmg_A 130 NNYEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSV-QVGEEEVAFA---RLLGE 204 (334)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHH
Confidence 3345677788889999999999988854 34589999999877666655333221111 12 2355544333 56777
Q ss_pred HHHHHHHHhcCccchhh
Q 009848 411 ASENICRLLDDVASHKF 427 (524)
Q Consensus 411 ~~~~i~RL~NDI~S~~k 427 (524)
..+...-+.||+..+..
T Consensus 205 ~lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 205 YIGICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhccCCC
Confidence 88888889999988863
No 23
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=81.25 E-value=17 Score=36.60 Aligned_cols=111 Identities=8% Similarity=0.003 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.|-..+..|... .||.++|+..-..-+|.-... ....| ++...+++..+.+ ..+-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~-a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRA-SVRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHH-HHHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHH-HHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3466777777777543 789999999855544444322 22222 2222455654433 56777778888899999
Q ss_pred cchhhh-----------hhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE-----------~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-+ ..+|.. +.+.+| ..|.|.+.+.+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 887543 222333 566555 478899999998888887776
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=80.63 E-value=35 Score=34.35 Aligned_cols=108 Identities=8% Similarity=-0.079 Sum_probs=66.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc-CCCCCHHHHHHhhchhHHHH
Q 009848 332 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVLKVPKIIT 410 (524)
Q Consensus 332 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~lp~e~~e~~~~~p~l~~ 410 (524)
+.+.....+.++....+.+-..+..|.. +..||.++|+..-..-+|.....++ ..|. =-..+++..+.+ -.+-+
T Consensus 136 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~ 210 (341)
T 3mzv_A 136 GNMRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAAT-EVGGIIGGAPEDQVQAL---FDYGD 210 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHH
Confidence 3335666788888899999999999864 3468999999876665555433222 2211 012455544333 56777
Q ss_pred HHHHHHHHhcCccchhhh-----------hhcCCCCchhhHHHhcC
Q 009848 411 ASENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 445 (524)
Q Consensus 411 ~~~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 445 (524)
..+...-+.||+..+.-+ ..+|.. ++..+|.-+.
T Consensus 211 ~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 211 ALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 888888899999877532 234444 6665665443
No 25
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=79.40 E-value=10 Score=37.64 Aligned_cols=110 Identities=9% Similarity=-0.012 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.+-..+..|... .||.++|+..-..-+|.....++.. +..| .+++..+.+ -++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 7899999998766665543222211 1123 456654443 56777888888999999
Q ss_pred cchhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-.. .+|.. +...++- .+.|.+.+.+.++++.+.+.
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~ 270 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELT 270 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 8885432 22332 5555553 57888888888888887776
No 26
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=77.58 E-value=20 Score=35.67 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccc
Q 009848 347 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVAS 424 (524)
Q Consensus 347 ~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 424 (524)
.+.+-..+..|... .||.++|...-..-+|.....+ ...| ++...+++..+.+ ..+-+..+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 66677777777543 4899999988554444432222 2222 2222255544433 5677778888889999998
Q ss_pred hhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhh
Q 009848 425 HKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 491 (524)
Q Consensus 425 ~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR 491 (524)
+.-+. .+|.. +.+.+| ..+.|.+.+++.++++.+.+. .+|. -......++.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~--------~l~~-~~~~L~~l~~ 289 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALR--------PFDA-AAEPLRELAR 289 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTT--------TSCG-GGHHHHHHHH
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH--------hCch-hHHHHHHHHH
Confidence 86432 22222 565555 478899999999998888777 3554 2444455554
No 27
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=76.01 E-value=12 Score=37.20 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc--CCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.+-..+..|. +..||.++|+..-..-+|..... ....|. +...+++..+. ..++-+..+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~-~~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRC-AIRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHH-HHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677878888886 45789999999865444443222 222221 11123332222 245667777788899999
Q ss_pred cchhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-+. .+|.. +...+| ..+.|.+.+.+.++++.+.+.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8875432 22333 566555 368888888888888888777
No 28
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=75.77 E-value=23 Score=35.29 Aligned_cols=113 Identities=7% Similarity=0.027 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCC-CCHHHHHHhhchhHHHHHHHHHHHHhcCcc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDI-ATKEVFEWVLKVPKIITASENICRLLDDVA 423 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 423 (524)
...+.+-..+..|... ..||.++|...-..-+|.-...++....++.. .+++..+.+ ..+-+..+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566777777777543 37899999987654444332222222223332 566655443 567778888888999998
Q ss_pred chhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 424 SHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 424 S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
.+.-+. .+|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 875432 22332 555544 478899999999998887776
No 29
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=75.19 E-value=16 Score=36.29 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHH--HHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTAS--FLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~--~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.+-..+..|...+..||.++|+..-..-+|.....++. -+..| .+++ ....+-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHHH
Confidence 457778888888876677899999999755544443222111 11123 2323 1245667778888899999
Q ss_pred cchhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-+. .+|.. +.+.++ ..+.|.+...+.++++.+.+.
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp C---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9885432 22222 555555 357788888998888888777
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=73.62 E-value=22 Score=35.90 Aligned_cols=110 Identities=14% Similarity=0.026 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.+-..+..|... .+|.++|+..-..-+|......+.. +..| .+++..+.+ ..+-...+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777778888664 6899999998776666543222211 1123 455554443 56777788888999999
Q ss_pred cchhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-+. .+|.. +...+| ..+.|.+.+.+.++++.+.+.
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8875432 22332 555554 368889999999999888877
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=73.24 E-value=30 Score=34.75 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHHHH
Q 009848 336 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITASE 413 (524)
Q Consensus 336 ~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~~~ 413 (524)
+...+.++....+.+-..+..|.... ..|.++|+..-..-+|.....++.. +..| .+++..+.+ -.+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 45567778888999999999997643 4599999998766555543332221 1123 455554433 56777888
Q ss_pred HHHHHhcCccchhh
Q 009848 414 NICRLLDDVASHKF 427 (524)
Q Consensus 414 ~i~RL~NDI~S~~k 427 (524)
...-+.||+..+.-
T Consensus 212 ~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 212 IAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88899999988753
No 32
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=71.75 E-value=26 Score=35.02 Aligned_cols=110 Identities=8% Similarity=-0.004 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcc
Q 009848 346 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 423 (524)
Q Consensus 346 ~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 423 (524)
..+.|-..+..|. +..||.++|+..-..-+|.-...+ ...| ++...+++..+.+ ..+-+..+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566777777775 345899999988654444432222 2222 2322455554433 567777888888999998
Q ss_pred chhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 424 SHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 424 S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
.+.-+. .+|.. +...+| ..+.|.+.+.+.++++.+.+.
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 274 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQIS 274 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 875332 22333 666665 378888889998988888777
No 33
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=71.70 E-value=30 Score=34.01 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITAS 412 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~~ 412 (524)
.++..+.++....+.+-..+..|......||.++|+..-..-+|.....++.. +..| .+++ ..-++-...
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~------~l~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh------HHHHHHHHH
Confidence 35566777778899999999999765547899999998766555543222111 1123 2223 124567777
Q ss_pred HHHHHHhcCccchhhhh-hcCC-------CCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 413 ENICRLLDDVASHKFEQ-KRGH-------IPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 413 ~~i~RL~NDI~S~~kE~-~rG~-------~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
+...-+.||+..+.-.. ..|. -.+...+| ..|.|.+.+.+.++++.+.+.
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 263 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIE 263 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999886543 2333 12444444 367889999999999988877
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=70.66 E-value=53 Score=32.94 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc--CCCCCHHHHHHhhchhHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM--GDIATKEVFEWVLKVPKIITAS 412 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~lp~e~~e~~~~~p~l~~~~ 412 (524)
.....+.++....+.+-+.+..|.. +.-||.++|+..-..-+|..... ....|+ + ..+++..+.+ -.+-+..
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~-~~~~ga~la-g~~~~~~~~l---~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFAL-SCYQGAQLA-GAPQSVIDRT---RDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHH-HHHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHH-HHHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 4566777888888888888887754 34689999998765555554322 222221 2 2355544333 5566777
Q ss_pred HHHHHHhcCccchhh-----------hhhcCCCCchhhHHHhc
Q 009848 413 ENICRLLDDVASHKF-----------EQKRGHIPSAVECYMKQ 444 (524)
Q Consensus 413 ~~i~RL~NDI~S~~k-----------E~~rG~~~n~V~cyMke 444 (524)
+...-+.||+..+.- ....|.. ++..+|.-+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 778888898877643 2345554 666666554
No 35
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=69.43 E-value=26 Score=34.82 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcc
Q 009848 346 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 423 (524)
Q Consensus 346 ~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 423 (524)
..+.+-..+..|.. ..||.++|...-..-+|.....+ ...| ++ ..+++..+.+ ..+-+..+...-+.||+.
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFA-LIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45667666767743 36899999987544444432222 2221 12 2355544333 567777788888999998
Q ss_pred chhhh-----------hhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 424 SHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 424 S~~kE-----------~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
.+.-+ ..+|.. +...++ ..+.|.+.+.+.++++.+.+.
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 278 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLE 278 (302)
T ss_dssp HTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 87432 222333 555554 478999999999999988877
No 36
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=67.55 E-value=87 Score=31.59 Aligned_cols=86 Identities=12% Similarity=-0.038 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhc-CCCCCHHHHHHhhchhHHHHHHHH
Q 009848 336 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVLKVPKIITASEN 414 (524)
Q Consensus 336 ~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~lp~e~~e~~~~~p~l~~~~~~ 414 (524)
+...+.++...++.+-..+..|... .-||.++|+.+-..-+|.....++ .+|+ =-..+++..+.+ -.+-+..++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADTL---EKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 4567788888999999999998654 368999999976666655533222 2221 012455554433 567778888
Q ss_pred HHHHhcCccchh
Q 009848 415 ICRLLDDVASHK 426 (524)
Q Consensus 415 i~RL~NDI~S~~ 426 (524)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888999998874
No 37
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=66.85 E-value=48 Score=33.62 Aligned_cols=88 Identities=9% Similarity=-0.024 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHhhhhhhhccchHHHHHHHHHhc-CCCCCHHHHHHhh
Q 009848 336 GIPYAKQTMQEVILMYFTEAKWLK----------EGY-VPSVEEYKSVALRSIAVLPVVTASFLDM-GDIATKEVFEWVL 403 (524)
Q Consensus 336 ~~~~~~~~w~~~~~a~l~EA~W~~----------~g~-iPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~lp~e~~e~~~ 403 (524)
+...+.++....+.|-..+..|.. .+. .||.++|+..-..-+|.....++ ..|. =-..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH-
Confidence 456778888899999999999962 233 67999999986665655533222 2211 012455544333
Q ss_pred chhHHHHHHHHHHHHhcCccchhh
Q 009848 404 KVPKIITASENICRLLDDVASHKF 427 (524)
Q Consensus 404 ~~p~l~~~~~~i~RL~NDI~S~~k 427 (524)
-.+-...+...-+.||+..+.-
T Consensus 211 --~~~g~~lG~aFQI~DD~lD~~g 232 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVLDIYG 232 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHHHHhcC
Confidence 5677778888889999988743
No 38
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=65.85 E-value=61 Score=32.53 Aligned_cols=89 Identities=13% Similarity=-0.017 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHH-hcCCCCCHHHHHHhhchhHHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFL-DMGDIATKEVFEWVLKVPKIITASE 413 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~-~~g~~lp~e~~e~~~~~p~l~~~~~ 413 (524)
.+...+.++....+.+-..+..|... ..||.++|+..-..-+|.....++..- .++ ..+++..+.+ -.+-...+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLT-GQTAEVAVLA---FEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CcCHHHHHHH---HHHHHHHH
Confidence 45667778888888998888776432 357999999976655554433222111 112 2355544333 55677788
Q ss_pred HHHHHhcCccchhhh
Q 009848 414 NICRLLDDVASHKFE 428 (524)
Q Consensus 414 ~i~RL~NDI~S~~kE 428 (524)
...-+.||+..+.-.
T Consensus 228 ~aFQi~DD~lD~~gd 242 (348)
T 3apz_A 228 LAFQLIDDILDFTGT 242 (348)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCC
Confidence 888899999888643
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=62.91 E-value=52 Score=32.39 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcC
Q 009848 344 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDD 421 (524)
Q Consensus 344 w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~ND 421 (524)
....+.+-..+..|.. ..||.++|...-..-+|.....+ ...| ++ ..+++..+.+ ..+-+..+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4445666666666643 46899999988555444443222 1222 12 2455543332 5677778888889999
Q ss_pred ccchhhh-hhcCCCC-------chhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHhh
Q 009848 422 VASHKFE-QKRGHIP-------SAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLAR 491 (524)
Q Consensus 422 I~S~~kE-~~rG~~~-------n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln~~e~l~~~~~p~~~~~~~~N~aR 491 (524)
+..+.-. ...|... +.+.++ ..+.|.+..+++++++.+.+. .+|....+..-.+++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~--------~~~~~~~~~l~~la~ 280 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE--------KLNEKLAQMIQNLII 280 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH--------TSCHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH--------HhchhHHHHHHHHHH
Confidence 9888643 2333321 333333 367788888888888877776 355443444445554
No 40
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=57.10 E-value=42 Score=33.35 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCcc
Q 009848 346 EVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVA 423 (524)
Q Consensus 346 ~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 423 (524)
..+.+-..+..|. +..||.++|...-..-+|.....+ ...| ++ ..+++..+. ...+-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3556666666764 346899999988544444432222 2221 12 234443333 2556777778888999998
Q ss_pred chhhh-----------hhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 424 SHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 424 S~~kE-----------~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
.+.-. ..+|.. +.+.+|. .+.|.+..+++++++.+.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~a------l~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKLG------LIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHHC------HHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHHH------HHHhHHHHHHHHHHHHHHHH
Confidence 87432 222332 5555553 67888888998888888776
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=56.53 E-value=32 Score=34.28 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHH-HHhhchhHHHHHHHHHHHHhcC
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVF-EWVLKVPKIITASENICRLLDD 421 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~-e~~~~~p~l~~~~~~i~RL~ND 421 (524)
...+.+-..+..|. +..||.++|+..-..-+|.....++.. +..| .+++.. +.+ ..+-+..+...-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45667777777775 567899999988555444432222111 1112 334433 333 5677778888889999
Q ss_pred ccchhhh-hhcCCCC-------chhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 422 VASHKFE-QKRGHIP-------SAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 422 I~S~~kE-~~rG~~~-------n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
+..+.-+ ..-|... +.+.++ ..+.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 9888653 3334432 333332 368888888888888887776
No 42
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=55.70 E-value=54 Score=32.78 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.+-..+..|... ..||.++|...-..-+|.-...+ ...| ++ ..+++..+.+ ..+-+..+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3467777777787543 36899999998544444432222 2222 12 2355544333 56777788888899999
Q ss_pred cchhhh-----------hhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFE-----------QKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE-----------~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-+ ..+|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~ 303 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILS 303 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 887432 222332 555554 468899999999998888877
No 43
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=54.75 E-value=22 Score=35.00 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhCC-CCCCHHHhhhhhhhccchHHHHHH--HHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 346 EVILMYFTEAKWLKEG-YVPSVEEYKSVALRSIAVLPVVTA--SFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 346 ~~~~a~l~EA~W~~~g-~iPt~eEYl~~~~~S~g~~~~~~~--~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
..+.|-..+..|...+ ..+|.++|+..-..-+|.....++ .-+..| .+++..+.+ -.+-...+...-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566666666664322 246889999875443333322111 112223 455554433 56777788888899999
Q ss_pred cchhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+..+. -.+...+| ..+.|.+.+.+.++++.+.+.
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9886544 23555555 467888888888888887776
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=51.87 E-value=65 Score=31.69 Aligned_cols=111 Identities=11% Similarity=-0.028 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcC--CCCCHHHHHHhhchhHHHHHHHHHHHHhcCc
Q 009848 345 QEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMG--DIATKEVFEWVLKVPKIITASENICRLLDDV 422 (524)
Q Consensus 345 ~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g--~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI 422 (524)
...+.+-..+..|... .+|.++|+..-..-+|..... ....|.- -..+++..+. ...+-...+...-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~-~~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRA-AVRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777543 789999999876555544222 2222210 1123443333 355677778888899999
Q ss_pred cchhhhh-----------hcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 423 ASHKFEQ-----------KRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 423 ~S~~kE~-----------~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
..+.-.. .+|.. +...+|- .+.|.+.+++.++++.+.+.
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~ 275 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLK 275 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 8885432 22333 5555543 57788889999999988877
No 45
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=45.17 E-value=90 Score=30.54 Aligned_cols=116 Identities=8% Similarity=-0.030 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH-HhcCCCCCHHHHHHhhchhHHHHHHHH
Q 009848 336 GIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF-LDMGDIATKEVFEWVLKVPKIITASEN 414 (524)
Q Consensus 336 ~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~-~~~g~~lp~e~~e~~~~~p~l~~~~~~ 414 (524)
....+.+++...+.|-..+..| .++|+..-..-+|.....++.. ..++ .+++..+.+ -.+-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 4556667777777777666554 6888887665555543222211 1123 444543332 556777788
Q ss_pred HHHHhcCccchhhhh----hcCCCCchhhHHHhcCCCCHHHH-HHHHHHHHHHHHHHhh
Q 009848 415 ICRLLDDVASHKFEQ----KRGHIPSAVECYMKQHVVSEEEA-EKALWLEIANGWKDLN 468 (524)
Q Consensus 415 i~RL~NDI~S~~kE~----~rG~~~n~V~cyMke~gvS~eeA-~~~i~~~i~~~wk~ln 468 (524)
..-+.||+..+.-+. ..|. .+...+| . ..+.++| ...+.+.++++.+.+.
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~ 257 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELIS 257 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999988875432 2222 3666666 3 3346777 4456677777776665
No 46
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=44.98 E-value=82 Score=31.36 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=56.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHhhhhhhhccchH-HHHH--HHHHhcCCCCCHHHHHHhhchhHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKW-LKEGYVPSVEEYKSVALRSIAVL-PVVT--ASFLDMGDIATKEVFEWVLKVPKIIT 410 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W-~~~g~iPt~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~lp~e~~e~~~~~p~l~~ 410 (524)
.....+.++....+.|-..+..| ...+..||.++|+..-..-+|.. .... +.-...|. +++.. .-.+-.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHH
Confidence 35566788889999999999999 65435689999998876655544 2222 12222232 22321 355677
Q ss_pred HHHHHHHHhcCccchh
Q 009848 411 ASENICRLLDDVASHK 426 (524)
Q Consensus 411 ~~~~i~RL~NDI~S~~ 426 (524)
..+...-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7788888999988875
No 47
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=40.75 E-value=19 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhchhchhhhhhHHHHHHHh
Q 009848 17 EQYDALKQEVRRMITSAVDEISHKLHLIDAVQRL 50 (524)
Q Consensus 17 ~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrL 50 (524)
+++.=|.+|||+.|.. +.+.++++-++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~-TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKI-TENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCC-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHH
Confidence 4455578999999986 58899999999998865
No 48
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=40.12 E-value=1e+02 Score=31.20 Aligned_cols=89 Identities=20% Similarity=0.063 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHhhhhhhhccchH-HH--HHHHHHhcCCCCCHHHHHHhhchhH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATKEVFEWVLKVPK 407 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~----iPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~lp~e~~e~~~~~p~ 407 (524)
.....+.+.....+.|-+.+..|...+. .+|.++|+..-..-+|.. .. +.+.-+..| ..+++..+.+ ..
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~l---~~ 244 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHENA---KA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHHH---HH
Confidence 3456677788888999999999976543 579999999877655554 21 122222223 1355544433 56
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 009848 408 IITASENICRLLDDVASHKF 427 (524)
Q Consensus 408 l~~~~~~i~RL~NDI~S~~k 427 (524)
+-...+...-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77888888899999988754
No 49
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=37.69 E-value=1.4e+02 Score=29.25 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh-cCCCCCHHHHHHhhchhHHHH
Q 009848 332 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD-MGDIATKEVFEWVLKVPKIIT 410 (524)
Q Consensus 332 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~lp~e~~e~~~~~p~l~~ 410 (524)
+.+.....+.+.+...+.+-..+..|......||.++|+..-..-+|.....++..-+ .+. .++ ..-.+-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~ 179 (301)
T 2q80_A 108 DHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLN 179 (301)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHH
Confidence 3345566788889999999999999987666899999999877655544322222211 121 221 2345677
Q ss_pred HHHHHHHHhcCccchhh
Q 009848 411 ASENICRLLDDVASHKF 427 (524)
Q Consensus 411 ~~~~i~RL~NDI~S~~k 427 (524)
..+...-+.||+..+.-
T Consensus 180 ~lG~aFQi~DD~ld~~~ 196 (301)
T 2q80_A 180 TLGLFFQIRDDYANLHS 196 (301)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 77888889999887743
No 50
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=37.33 E-value=3.1e+02 Score=26.97 Aligned_cols=101 Identities=6% Similarity=-0.046 Sum_probs=63.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITAS 412 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~~ 412 (524)
.+...+.++....+.|-..+..|.. +..||.++|+..-..-+|.....++.. ...|.. .+ ....+-+..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~------~l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK------IYADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH------HHHHHHHHH
Confidence 4556777888889999999999865 346899999987665555443222211 222332 11 224567777
Q ss_pred HHHHHHhcCccchhhh-----------hhcCCCCchhhHHHhcC
Q 009848 413 ENICRLLDDVASHKFE-----------QKRGHIPSAVECYMKQH 445 (524)
Q Consensus 413 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 445 (524)
+...-+.||+..+.-. ...|.. +...+|.-++
T Consensus 193 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 193 GMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 8888899998877432 222333 6666666554
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=33.11 E-value=76 Score=31.81 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHHHH
Q 009848 336 GIPYAKQTMQEVILMYFTEAKWLKEG--YVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKIITA 411 (524)
Q Consensus 336 ~~~~~~~~w~~~~~a~l~EA~W~~~g--~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~~~ 411 (524)
....+.++....+.|-..+..|.... ..||.++|+.+-..-+|.....++.. ...|. +++ . ...-.+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 55567778888999999999998765 57899999998776665543322211 11222 222 1 233567888
Q ss_pred HHHHHHHhcCccchhh
Q 009848 412 SENICRLLDDVASHKF 427 (524)
Q Consensus 412 ~~~i~RL~NDI~S~~k 427 (524)
.+...-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999988754
No 52
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=32.91 E-value=1.1e+02 Score=30.38 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=59.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHHhhchhHHHHHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASEN 414 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~ 414 (524)
.....+.++....+.|-..+..|... ..||.++|+..-..-+|.....++..-++=-..+++..+.+ -.+-...+.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 45667778888899999999988653 35899999998776665553322222111112455554433 567778888
Q ss_pred HHHHhcCccchhh
Q 009848 415 ICRLLDDVASHKF 427 (524)
Q Consensus 415 i~RL~NDI~S~~k 427 (524)
..-+.||+..+.-
T Consensus 206 afQi~DD~ld~~~ 218 (325)
T 3aqb_B 206 SYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 8889999988754
No 53
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=32.88 E-value=1e+02 Score=31.03 Aligned_cols=106 Identities=8% Similarity=-0.030 Sum_probs=65.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCCHHHhhhhhhhccchH-HH--HHHHHHhcCCCCCH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWL-----------KEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATK 396 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~-----------~~g~----iPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~lp~ 396 (524)
.+...+.++....+.|-..+..|. ..|. .||.++|+..-..-+|.. .. +.+.-+..| ..++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~ 229 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCH
Confidence 356667788888999999999887 3223 489999999877655554 22 222222223 1233
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhcCccchhhh----------hhcCCCCchhhHHHhcC
Q 009848 397 EVFEWVLKVPKIITASENICRLLDDVASHKFE----------QKRGHIPSAVECYMKQH 445 (524)
Q Consensus 397 e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE----------~~rG~~~n~V~cyMke~ 445 (524)
+..+. .-.+-...++..-+.||+..+.-. ...|.. ++..++.-++
T Consensus 230 ~~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 230 VEMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 33222 255777788888899999887542 223333 6666665544
No 54
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=31.56 E-value=1.4e+02 Score=30.27 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHhhhhhhhccchH-HH--HHHHHHhcCCCCCHHHHHHhhchhHH
Q 009848 336 GIPYAKQTMQEVILMYFTEAKWLKEGY----VPSVEEYKSVALRSIAVL-PV--VTASFLDMGDIATKEVFEWVLKVPKI 408 (524)
Q Consensus 336 ~~~~~~~~w~~~~~a~l~EA~W~~~g~----iPt~eEYl~~~~~S~g~~-~~--~~~~~~~~g~~lp~e~~e~~~~~p~l 408 (524)
....+.+.....+.|-+.+..|...+. .||+++|+..-..-+|.. .. +.+.-+..| ..+++..+.+ ..+
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHH
Confidence 556677788888999999999976544 389999999877655554 22 122222223 2455554443 567
Q ss_pred HHHHHHHHHHhcCccchhh
Q 009848 409 ITASENICRLLDDVASHKF 427 (524)
Q Consensus 409 ~~~~~~i~RL~NDI~S~~k 427 (524)
-...+...-+.||+..+.-
T Consensus 253 g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 7888888899999988754
No 55
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=29.23 E-value=4.6e+02 Score=26.48 Aligned_cols=77 Identities=17% Similarity=0.006 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHH-H--HHHHHHhcCCCCCHHHHHHhhchhHHHHHHHHHHHHhc
Q 009848 344 MQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLP-V--VTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLD 420 (524)
Q Consensus 344 w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~-~--~~~~~~~~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~N 420 (524)
....+.+-..+..|...+ .||.++|+.+-..-+|... . +.+.-+..| .+++..+.+ -.+-+..++..-+.|
T Consensus 184 ~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~l---~~~G~~lG~AFQI~D 257 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDAL---LHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 356777888888887644 5799999997666555541 1 112222223 345544433 567778888888999
Q ss_pred Cccchh
Q 009848 421 DVASHK 426 (524)
Q Consensus 421 DI~S~~ 426 (524)
|+..+-
T Consensus 258 DiLd~~ 263 (380)
T 3lk5_A 258 DLLGVF 263 (380)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998874
No 56
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=28.82 E-value=71 Score=31.05 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHh--cCCCCCHHHHHHhhchhHHHHHHHHHHHHhcCccc
Q 009848 347 VILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLD--MGDIATKEVFEWVLKVPKIITASENICRLLDDVAS 424 (524)
Q Consensus 347 ~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 424 (524)
.+.+-..+..|..+ .||.++|...-..-+|.....+ ...| ++ ..+++..+.+ .++-+..+...-+.||+..
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~~~ 223 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMKNS 223 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 45666666666443 7899999986544444433222 2222 12 2455554433 5677778888889999710
Q ss_pred hhhhhhcCCCCchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 425 HKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 425 ~~kE~~rG~~~n~V~cyMke~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
+.|++.+.+.++.+.+-+.+.
T Consensus 224 -----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 224 -----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp -----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 225556666666666666655
No 57
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=26.92 E-value=5e+02 Score=26.15 Aligned_cols=107 Identities=8% Similarity=-0.086 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhCCCCCCH-HHhhhhhhhccchH-H--HHHHHHHhcCCCCCHHHHHHhhchhHHHH
Q 009848 335 YGIPYAKQTMQEVILMYFTEAKWLKEGYVPSV-EEYKSVALRSIAVL-P--VVTASFLDMGDIATKEVFEWVLKVPKIIT 410 (524)
Q Consensus 335 ~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~-eEYl~~~~~S~g~~-~--~~~~~~~~~g~~lp~e~~e~~~~~p~l~~ 410 (524)
.....+.++....+.|-..+..|...+..+++ ++|+.+-..-+|.. . .+.+.-+..|. +++. +.+.....+-.
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~-~~~~~l~~~g~ 244 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSS-AQLNLIEAILY 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCC-SSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhH-HHHHHHHHHHH
Confidence 34567788888899999999888776634555 99998866655554 1 12222233342 2221 00122355777
Q ss_pred HHHHHHHHhcCccchh------hhhhcCCCCchhhHHHhcC
Q 009848 411 ASENICRLLDDVASHK------FEQKRGHIPSAVECYMKQH 445 (524)
Q Consensus 411 ~~~~i~RL~NDI~S~~------kE~~rG~~~n~V~cyMke~ 445 (524)
..+...-+.||+..+. .+...|.. +...++.-+.
T Consensus 245 ~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~-T~pvi~al~~ 284 (368)
T 2her_A 245 KLGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSCTTTTTCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHhCCcc-cHHHHHHHHh
Confidence 7888888999998875 12233433 5555555443
No 58
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=22.93 E-value=66 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 009848 445 HVVSEEEAEKALWLEIANGWKDLN 468 (524)
Q Consensus 445 ~gvS~eeA~~~i~~~i~~~wk~ln 468 (524)
||++.+||+..+.+.+.+++..+.
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~~ 29 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEFK 29 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999998886543
No 59
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.66 E-value=72 Score=27.49 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCh-hHHHHHHHHHHHH-hhccccCCC------ccchhHHHHHHHHHHHhhhhhcc
Q 009848 213 AHQKELSDMTRWWKDLDIPTKLP-YARDRMVEVYFWT-LVGVYCEPK------YTFGRILVSKIICLISLIDDTFD 280 (524)
Q Consensus 213 ~hq~El~~lsrW~~~~~l~~~l~-~aRdr~ve~yf~a-~~a~~feP~------~s~~Rl~~ak~~~l~~v~DD~fD 280 (524)
+..+|++++.+|..+++|..... ..|| +...|.-| + --.|.|+ |+.+.-.-+|...|-++=--+|-
T Consensus 12 l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEI-l~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 12 VDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEV-IKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp CCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHH-HHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHH-HHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 45689999999999999964333 4554 55555533 2 2233465 55555566777888765445554
No 60
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.56 E-value=2e+02 Score=22.70 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=41.6
Q ss_pred hchhhhhhHHHHHHHhCcccccHHHHHHHHHHHHhc-cCCCCCChhhhHHHHHHhhhcCcccchhhhh
Q 009848 35 DEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LGSDSDNLYTVSLRFRLLRQQRVKISCDVFE 101 (524)
Q Consensus 35 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~-~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~ 101 (524)
+.....=.+...+.++|++ ++|++++++.+=.. +..-..+=...+|.-.-+.|+|+.++.+.+.
T Consensus 25 dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLP---DLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred CCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 3455566777888999976 67777776654221 1111233455677777889999999977653
No 61
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=20.14 E-value=2.2e+02 Score=27.83 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=57.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHH--HhcCCCCCHHHHHHhhchhHHH
Q 009848 332 GRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASF--LDMGDIATKEVFEWVLKVPKII 409 (524)
Q Consensus 332 ~~~~~~~~~~~~w~~~~~a~l~EA~W~~~g~iPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~lp~e~~e~~~~~p~l~ 409 (524)
+.+.....+.++....+.+-..+..|.... ||.++|+..-..-+|.....++.. ...|. +++ .+ -.+-
T Consensus 124 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~---~l---~~~g 193 (299)
T 1v4e_A 124 GNNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGE---DL---YNLG 193 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCH---HH---HHHH
T ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHH---HH---HHHH
Confidence 333566778888899999999999997655 999999988766555543222111 12232 112 12 4466
Q ss_pred HHHHHHHHHhcCccchhhh
Q 009848 410 TASENICRLLDDVASHKFE 428 (524)
Q Consensus 410 ~~~~~i~RL~NDI~S~~kE 428 (524)
...+...-+.||+..+.-+
T Consensus 194 ~~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 194 VTIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCc
Confidence 6777777888888877544
Done!