BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009849
         (524 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FAJ|A Chain A, Structure And Mode Of Peptide Binding Of Pheromone
           Receptor Prgz
          Length = 564

 Score = 37.0 bits (84), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 33/159 (20%)

Query: 385 RNTDVRKALNCAIEQHMVIKR--------SLGALP---LYVPKNEKLWNCENLYGNPNQY 433
           +N +VRKA+N AI++  ++K+        S+G +P    + P N+K +  E L     + 
Sbjct: 334 QNKNVRKAINYAIDRESLVKKLLDNGSVASVGVVPKEMAFNPVNKKDFANEKLVEFNKKQ 393

Query: 434 PKEVWDRIQKFLTSSSGRSA-IMASQCRYEAALILKNSCLPELALGEILKILNMVITP-- 490
            +E WD+ +K +  S   S  ++ S   +E     K     +  L + L+ L + +TP  
Sbjct: 394 AEEYWDKAKKEIDLSKNTSLDLLVSDGEFEK----KAGEFLQGQLQDSLEGLKVTVTPIP 449

Query: 491 ---------KKWIIHHQSGWQ-----PVTITLAEYKSDS 515
                    KK      SGWQ     P++  LA ++++S
Sbjct: 450 ANVFMERLTKKDFTLSLSGWQADYADPISF-LANFETNS 487


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,717,655
Number of Sequences: 62578
Number of extensions: 559161
Number of successful extensions: 700
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 1
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)