BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009849
         (524 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2UXC6|HEM1_CLOBA Glutamyl-tRNA reductase OS=Clostridium botulinum (strain Alaska E43
           / Type E3) GN=hemA PE=3 SV=1
          Length = 401

 Score = 43.1 bits (100), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 20/144 (13%)

Query: 273 ELKSSYFESPNPASLNVPQK---GHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 329
           ++K+SYF+S N  +LN+  +    +A+  G+           SR  E P SS+S     +
Sbjct: 112 QVKTSYFKSLNAKALNLELQRLFQYAITCGKKF------KSQSRLFEIPVSSASIVVNES 165

Query: 330 SSNG-------GWGTQGRLTPSEYVQGLIGVILLALNTLKI-ERVVPSEANITDCIRYGE 381
            +         G+G  GRLT    +   I  + LA+   KI + +V    N+ D   + E
Sbjct: 166 INKDCKKFMVLGYGDVGRLTMKYLLAHNINEVYLAVRNKKIKDEIVDERVNVID---FEE 222

Query: 382 PKHRNTDVRKALNCAIEQHMVIKR 405
                 D+   ++C    H+VIK+
Sbjct: 223 KNKYINDMDCVISCTSAPHIVIKK 246


>sp|B2TPD9|HEM1_CLOBB Glutamyl-tRNA reductase OS=Clostridium botulinum (strain Eklund 17B
           / Type B) GN=hemA PE=3 SV=1
          Length = 401

 Score = 41.2 bits (95), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 20/144 (13%)

Query: 273 ELKSSYFESPNPASLNVPQK---GHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 329
           ++K+SYF+S N  +LN+  +    +A+  G+           SR  E P SS+S     +
Sbjct: 112 QVKTSYFKSLNAKALNLELQRLFQYAITCGKKF------KSQSRLFEIPVSSASIVVNES 165

Query: 330 SSNG-------GWGTQGRLTPSEYVQGLIGVILLALNTLKI-ERVVPSEANITDCIRYGE 381
            +         G+G  GRLT    +   I  + LA+   KI + ++    N+ D   + E
Sbjct: 166 INKDCKKFMVLGYGDVGRLTMKYLLAHNINEVYLAVRNKKIKDEIMDKRVNVID---FEE 222

Query: 382 PKHRNTDVRKALNCAIEQHMVIKR 405
                 D+   ++C    H+VIK+
Sbjct: 223 KNKYINDMDCVISCTSAPHIVIKK 246


>sp|Q5U4T7|BIC1B_XENLA Protein bicaudal C homolog 1-B OS=Xenopus laevis GN=bicc1-b PE=2
           SV=1
          Length = 970

 Score = 35.8 bits (81), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 136 ESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRN 195
           +S +NDYS      ++KQ K A H          S+ N+  C + L+G NG N + +F+ 
Sbjct: 820 DSSHNDYSSSIGSPKRKQNKSAEHYL--------SSSNYMDCISSLTGSNGCNLNSSFKG 871

Query: 196 QHL 198
             L
Sbjct: 872 SDL 874


>sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A OS=Xenopus laevis GN=bicc1-a PE=2
           SV=1
          Length = 963

 Score = 35.8 bits (81), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 136 ESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRN 195
           +S  NDYS      ++KQ K A H          S+ N+  C + L+G NG N + +F+ 
Sbjct: 813 DSSQNDYSSSIGSPKRKQNKSAEHYL--------SSSNYMDCISSLTGSNGCNLNSSFKG 864

Query: 196 QHL 198
             L
Sbjct: 865 SDL 867


>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
          Length = 2946

 Score = 32.7 bits (73), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 216  LPHNSQNHGF--RPIPPSSNGPRFPPAPPANLPDIGKLNMSEYP----NYAQNCPNFHPQ 269
            +PH S NHGF  + IP  S G  F    PA  PD  K   +  P        + P+    
Sbjct: 1617 IPHPSLNHGFLAKLIPEQSFGHSFYKETPAAFPDTIKEKETPTPGEDIQVESSIPHTDSG 1676

Query: 270  SGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPA 329
             GEE  +S     N A L         P   +    +L+S   +  E    + S T  PA
Sbjct: 1677 IGEEQVASIL---NGAELETSTG----PDAMSELLSTLSSEVKKSQESLTENPSETLKPA 1729

Query: 330  SSNGGWGTQGRLTPSEYVQGLIG 352
            +S         +   E ++ L+ 
Sbjct: 1730 TSISSISQTKGINVKEILKSLVA 1752


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,869,758
Number of Sequences: 539616
Number of extensions: 10311321
Number of successful extensions: 24003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 23324
Number of HSP's gapped (non-prelim): 858
length of query: 524
length of database: 191,569,459
effective HSP length: 122
effective length of query: 402
effective length of database: 125,736,307
effective search space: 50545995414
effective search space used: 50545995414
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)