Query 009849
Match_columns 524
No_of_seqs 98 out of 105
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 14:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 97.8 2E-05 6.8E-10 69.8 5.2 55 9-63 107-163 (165)
2 3i9v_6 NADH-quinone oxidoreduc 49.7 9.7 0.00033 35.8 3.0 28 337-367 137-164 (181)
3 3o6p_A Peptide ABC transporter 47.5 5.4 0.00018 35.3 0.9 29 381-409 17-45 (229)
4 3ayh_A DNA-directed RNA polyme 46.5 22 0.00076 31.3 4.6 46 439-488 57-102 (136)
5 3lvu_A ABC transporter, peripl 44.5 9.5 0.00033 34.4 2.0 29 381-409 14-42 (258)
6 3pam_A Transmembrane protein; 37.4 13 0.00044 33.5 1.8 28 382-409 15-42 (259)
7 3kn3_A Putative periplasmic pr 34.0 25 0.00085 33.7 3.2 71 386-456 152-239 (242)
8 1vbk_A Hypothetical protein PH 33.5 24 0.00084 34.3 3.1 30 13-43 182-211 (307)
9 3rjz_A N-type ATP pyrophosphat 32.9 26 0.0009 33.5 3.2 28 13-40 7-34 (237)
10 3hdv_A Response regulator; PSI 25.9 65 0.0022 25.0 3.8 33 9-41 5-38 (136)
11 2j48_A Two-component sensor ki 24.8 84 0.0029 23.0 4.1 30 12-41 2-32 (119)
12 3cg4_A Response regulator rece 24.4 85 0.0029 24.4 4.3 32 10-41 6-38 (142)
13 3lte_A Response regulator; str 23.9 79 0.0027 24.2 4.0 33 9-41 4-37 (132)
14 3eod_A Protein HNR; response r 23.7 99 0.0034 23.7 4.5 33 9-41 5-38 (130)
15 3zs6_A Periplasmic oligopeptid 23.5 34 0.0012 34.2 2.2 31 379-409 268-298 (506)
16 3muq_A Uncharacterized conserv 23.4 72 0.0025 30.1 4.3 90 358-456 132-234 (237)
17 3ry3_A Putative solute-binding 23.3 39 0.0013 34.3 2.6 29 381-409 279-307 (528)
18 2b4a_A BH3024; flavodoxin-like 23.3 92 0.0031 24.2 4.3 34 8-41 12-46 (138)
19 1qkk_A DCTD, C4-dicarboxylate 22.9 81 0.0028 25.2 4.0 30 11-40 3-33 (155)
20 2noo_A NIKA, nickel-binding pe 22.9 36 0.0012 33.9 2.2 31 379-409 255-285 (502)
21 1jet_A OPPA, oligo-peptide bin 22.7 35 0.0012 34.2 2.1 31 379-409 279-309 (517)
22 4gl8_A Oligopeptide ABC transp 22.5 34 0.0012 34.2 1.9 30 380-409 296-325 (529)
23 2der_A TRNA-specific 2-thiouri 22.3 70 0.0024 32.1 4.2 31 12-42 19-49 (380)
24 3tpa_A Heme-binding protein A; 22.1 31 0.001 34.8 1.5 31 379-409 278-308 (521)
25 2gkg_A Response regulator homo 21.9 85 0.0029 23.5 3.7 30 12-41 6-36 (127)
26 1dpe_A Dipeptide-binding prote 21.7 34 0.0012 34.1 1.8 30 380-409 272-301 (507)
27 2qxy_A Response regulator; reg 21.5 1.1E+02 0.0037 23.8 4.4 31 11-41 4-35 (142)
28 2rdm_A Response regulator rece 21.5 1E+02 0.0035 23.5 4.1 31 11-41 5-36 (132)
29 3grc_A Sensor protein, kinase; 21.3 1.1E+02 0.0037 23.8 4.3 32 10-41 5-37 (140)
30 2lo0_A Uncharacterized protein 21.2 42 0.0014 27.9 1.9 14 434-447 39-52 (75)
31 2qr3_A Two-component system re 21.1 1.1E+02 0.0036 23.7 4.1 32 10-41 2-34 (140)
32 2o7i_A Oligopeptide ABC transp 20.9 42 0.0014 34.6 2.3 30 380-409 274-303 (592)
33 2rjn_A Response regulator rece 20.9 1.2E+02 0.004 24.2 4.5 34 8-41 4-38 (154)
34 1vr5_A Oligopeptide ABC transp 20.6 42 0.0014 34.1 2.2 30 380-409 275-304 (547)
35 3k32_A Uncharacterized protein 20.5 59 0.002 29.2 2.9 29 13-41 9-37 (203)
36 3t6k_A Response regulator rece 20.4 1.1E+02 0.0038 24.0 4.3 31 11-41 4-35 (136)
37 3i42_A Response regulator rece 20.2 1E+02 0.0035 23.5 3.8 31 11-41 3-34 (127)
38 2hma_A Probable tRNA (5-methyl 20.1 61 0.0021 32.4 3.2 30 12-41 11-40 (376)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=97.79 E-value=2e-05 Score=69.85 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=49.2
Q ss_pred CCCceEEEEeCCcchHHHHHHHhhc-CceEEEEccCC-CCHHHHhhcceEEEcchhc
Q 009849 9 PAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV 63 (524)
Q Consensus 9 PpPAnIvLISGDrDFS~ALh~LRmR-~YNILLA~P~~-ASasL~sAAS~vWlW~SLl 63 (524)
+...+++|+|||.||..++..||.+ |..|+++.++. ++..|..+|.....++.++
T Consensus 107 ~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~ 163 (165)
T 2qip_A 107 PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF 163 (165)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence 5679999999999999999999998 99999999665 7899999999888888765
No 2
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=49.70 E-value=9.7 Score=35.79 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=24.0
Q ss_pred CCCCCCCccchhhHHHHHHHHHhhhhccccc
Q 009849 337 TQGRLTPSEYVQGLIGVILLALNTLKIERVV 367 (524)
Q Consensus 337 ~~g~p~ps~~~qglI~viL~aL~~LK~Eki~ 367 (524)
-||||+ .++.+|+.|+..++.++.|++-
T Consensus 137 IPGCPP---~Pe~il~~l~~l~~ki~~~~~~ 164 (181)
T 3i9v_6 137 VPGCPP---RPEALIYAVMQLQKKVRGQAYN 164 (181)
T ss_dssp ECCSSC---CHHHHHHHHHHHHHHHTTCCBC
T ss_pred eeCCCC---CHHHHHHHHHHHHHHHhhcccc
Confidence 499999 5778899999999999999874
No 3
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=47.47 E-value=5.4 Score=35.34 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.9
Q ss_pred CCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 381 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 381 d~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
.+-+.+..|||||..||-.+.+|+..++.
T Consensus 17 ~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 45 (229)
T 3o6p_A 17 KSPFRNANLRKAISYSIDRKALVESILGD 45 (229)
T ss_dssp TCGGGCHHHHHHHHHTCCHHHHHHTTTCS
T ss_pred cccCCCHHHHHHHHHHhhHHHHHHHHHcC
Confidence 45577889999999999999999988654
No 4
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=46.49 E-value=22 Score=31.26 Aligned_cols=46 Identities=26% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHHHHHhCCccchhhhccccHHHHHHHHHHhcccchhhhHHHHHHHHhh
Q 009849 439 DRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVI 488 (524)
Q Consensus 439 D~Iq~FisS~~G~saI~~SqsRyeaA~~LKk~CLk~LalgDVLQILnmlI 488 (524)
.++-+||.+..... +|+++.+...++..==-.|+.+|+|||+|+.-
T Consensus 57 ~e~l~YL~~~p~~~----~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P 102 (136)
T 3ayh_A 57 FEILKYLSSQGNCE----GLTKERFLDCIAIFNEFELTKAEILVILNNKP 102 (136)
T ss_dssp HHHHHHHHTTTCCT----TCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCcc----ccCHHHHHHHHHHHHhcCCCHHHHHHHhccCC
Confidence 34566666553322 57787777777664334799999999999853
No 5
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=44.51 E-value=9.5 Score=34.36 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 381 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 381 d~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
.+-+.+..|||||..||-++.+|+..++.
T Consensus 14 ~~p~~d~~vRqAl~~aiDr~~iv~~~~~g 42 (258)
T 3lvu_A 14 RAPFDDWRLREALLLAFNFEFINDTVTGG 42 (258)
T ss_dssp STTTTSHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHhcCHHHHHHHHhcc
Confidence 45678899999999999999999998654
No 6
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=37.42 E-value=13 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 382 PKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 382 ~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
+-+.+..|||||..||-.+.+|+..++.
T Consensus 15 ~p~~d~~vRqAi~~aiDr~~i~~~v~~g 42 (259)
T 3pam_A 15 TLFKDKRVRQALSILFDFEWVNHHLFNN 42 (259)
T ss_dssp GGGCSHHHHHHHHHHCCHHHHHHHTSCS
T ss_pred ccccCHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4567889999999999999999998654
No 7
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=34.01 E-value=25 Score=33.67 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHhH---------HHH----HhcCCcceeecCCCccceecc-cCCCCCCCchH---HHHHHHHHHhCC
Q 009849 386 NTDVRKALNCAIEQHM---------VIK----RSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKE---VWDRIQKFLTSS 448 (524)
Q Consensus 386 ~~DVkKaLe~Ai~~q~---------vvk----~~lg~m~lyv~kne~lWkCVn-~~gnpk~fpK~---~WD~Iq~FisS~ 448 (524)
+-..-.+|..|.|.++ +-. ++-.+|.+++-.++.|-+--- +-.||+.||.. -=...-.||.|+
T Consensus 152 g~gm~~~l~~a~~~~~Y~l~dr~t~l~~~~~~~~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~ 231 (242)
T 3kn3_A 152 GQGMLATINIAEEQKGLTLTDRGTFIKYESNHKGKPPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFIDWIVSE 231 (242)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEHHHHHHHHHHSCSSCSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSH
T ss_pred CcCHHHHHHHHHHcCCEEEeeehhhhhcchhhcCCCCeEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHHHHHcCH
Confidence 4567789999999998 333 345579999999999998777 88899888744 556677889999
Q ss_pred ccchhhhc
Q 009849 449 SGRSAIMA 456 (524)
Q Consensus 449 ~G~saI~~ 456 (524)
.|..+|..
T Consensus 232 ~~q~~i~~ 239 (242)
T 3kn3_A 232 KMQAEIAN 239 (242)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99888753
No 8
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=33.51 E-value=24 Score=34.27 Aligned_cols=30 Identities=7% Similarity=-0.057 Sum_probs=26.4
Q ss_pred eEEEEeCCcchHHHHHHHhhcCceEEEEccC
Q 009849 13 NYLLISGDRDFSNALHQLRMRRYNILLAQPH 43 (524)
Q Consensus 13 nIvLISGDrDFS~ALh~LRmR~YNILLA~P~ 43 (524)
-++++|| .|=+-|++.|..+||.|..++=.
T Consensus 182 vlvllSG-vDS~vaa~ll~~~G~~v~~v~~~ 211 (307)
T 1vbk_A 182 MIGILHD-ELSALAIFLMMKRGVEVIPVYIG 211 (307)
T ss_dssp EEEECSS-HHHHHHHHHHHHBTCEEEEEEES
T ss_pred EEEEEeC-CcHHHHHHHHHhCCCeEEEEEEE
Confidence 3799999 99999999999999999987633
No 9
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=32.93 E-value=26 Score=33.49 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=25.0
Q ss_pred eEEEEeCCcchHHHHHHHhhcCceEEEE
Q 009849 13 NYLLISGDRDFSNALHQLRMRRYNILLA 40 (524)
Q Consensus 13 nIvLISGDrDFS~ALh~LRmR~YNILLA 40 (524)
-++++||-.|=+.||+.|++.||.|+.+
T Consensus 7 vvvl~SGGkDSs~al~~l~~~G~eV~~L 34 (237)
T 3rjz_A 7 VAVLYSGGKDSNYALYWAIKNRFSVKFL 34 (237)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEecCcHHHHHHHHHHHHcCCeEEEE
Confidence 4789999999999999999999998643
No 10
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=25.85 E-value=65 Score=24.95 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 9 PAPSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 9 PpPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
+.+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 38 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGAD 38 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeC
Confidence 34678999999988887776 5667799988764
No 11
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.85 E-value=84 Score=22.95 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=23.0
Q ss_pred ceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 12 SNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 12 AnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
.+|++|.+|..+...|. .|+..||.|..+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~ 32 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLV 32 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEec
Confidence 47899998888777665 5677899987654
No 12
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=24.42 E-value=85 Score=24.38 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 10 APSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 10 pPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
.+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~ 38 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISAD 38 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeC
Confidence 4678999999988877776 5666799876554
No 13
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.95 E-value=79 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 9 PAPSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 9 PpPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
..+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 37 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAH 37 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeC
Confidence 34578999999988888776 5666899888664
No 14
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.68 E-value=99 Score=23.70 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=25.7
Q ss_pred CCCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 9 PAPSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 9 PpPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
..+.+|++|.+|..+...|. .|+..||.|..+.
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 38 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAA 38 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC
Confidence 35678999999998887776 5777899988654
No 15
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=23.55 E-value=34 Score=34.21 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=26.8
Q ss_pred cCCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 379 YGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 379 yGd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
...+-+.+..|||||..||-++.+++..+|.
T Consensus 268 ~~~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 298 (506)
T 3zs6_A 268 NSDPALKDKRVREALAMVLDREILTSKITQA 298 (506)
T ss_dssp TTSTTTTSHHHHHHHHHHCCHHHHHHHTTCS
T ss_pred CCCCccCCHHHHHHHHHhhCHHHHHHHHhcC
Confidence 3456788999999999999999999998764
No 16
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=23.38 E-value=72 Score=30.11 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=63.3
Q ss_pred HhhhhcccccCCCccccchhhcCCCCCCCchHHHHHHHHHHHhHHH---------HHhcCCcceeecCCCccceecc-cC
Q 009849 358 LNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVI---------KRSLGALPLYVPKNEKLWNCEN-LY 427 (524)
Q Consensus 358 L~~LK~Eki~PtE~nI~DCIryGd~k~~~~DVkKaLe~Ai~~q~vv---------k~~lg~m~lyv~kne~lWkCVn-~~ 427 (524)
+..++.-.|-|... -++.+| --.-.+|..|.|.++.+ .++-++|.+++-+++.|.+--- +-
T Consensus 132 ~~~~~~~gi~p~~~---wy~~~g------~gm~~~l~~a~~~~~y~l~dr~t~l~~~~~~~l~i~~~gd~~l~n~y~v~~ 202 (237)
T 3muq_A 132 MGFWAQTKIEPNFG---GYRSVG------QGMGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVIL 202 (237)
T ss_dssp HHHHHHHTCCSCST---TEEECC------CCHHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECCCGGGEEEEEEEE
T ss_pred HHHHHHcCCCCCCC---chhhhC------cCHHHHHHHHHhcCCEEEEechHHhhccccCCeEEEEcCCCceeeeeEEEE
Confidence 34445555556542 244443 34678999999998642 2444579999999999998777 88
Q ss_pred CCCCCCch---HHHHHHHHHHhCCccchhhhc
Q 009849 428 GNPNQYPK---EVWDRIQKFLTSSSGRSAIMA 456 (524)
Q Consensus 428 gnpk~fpK---~~WD~Iq~FisS~~G~saI~~ 456 (524)
.||+.||. +-=...-.||.|+.|..+|..
T Consensus 203 v~p~~~~~~~~~~a~~f~~wl~s~~gQ~~i~~ 234 (237)
T 3muq_A 203 VNPERYPTINYQGAKAFSDWLVNPRGQELING 234 (237)
T ss_dssp ECTTTCTTSCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred ECcccCCccCHHHHHHHHHHHcCHHHHHHHHh
Confidence 88888873 355667788999999888753
No 17
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=23.30 E-value=39 Score=34.27 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=24.6
Q ss_pred CCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 381 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 381 d~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
.+-+.+..|||||..||-++.+++..++.
T Consensus 279 ~~~~~d~~vRqAl~~aiDr~~i~~~~~~g 307 (528)
T 3ry3_A 279 NDVTADVAIRRAINYAINRQLLADQIMEG 307 (528)
T ss_dssp CTTTTSHHHHHHHHHHCCHHHHHHHHSTT
T ss_pred cccccCHHHHHHHHHhcCHHHHHHHHhcC
Confidence 34467889999999999999999998654
No 18
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.30 E-value=92 Score=24.24 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=24.8
Q ss_pred CCCCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 8 NPAPSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 8 NPpPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
.++..+|+||-+|..+...|. .|+..||.|..+.
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 46 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHP 46 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 456788999998888887776 5666899876543
No 19
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.92 E-value=81 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=19.3
Q ss_pred CceEEEEeCCcchHHHHH-HHhhcCceEEEE
Q 009849 11 PSNYLLISGDRDFSNALH-QLRMRRYNILLA 40 (524)
Q Consensus 11 PAnIvLISGDrDFS~ALh-~LRmR~YNILLA 40 (524)
+.+|+||.+|.++...|. .|+..||.|..+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~ 33 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF 33 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE
Confidence 456777777777666664 555577776644
No 20
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=22.85 E-value=36 Score=33.93 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=26.2
Q ss_pred cCCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 379 YGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 379 yGd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
...+-+.+..|||||..||-.+.+++..++.
T Consensus 255 ~~~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 285 (502)
T 2noo_A 255 TAKAPTNELAVREALNYAVNKKSLIDNALYG 285 (502)
T ss_dssp TTSTTTTSHHHHHHHHHHCCHHHHHHHHTTT
T ss_pred CCCccccCHHHHHHHHHhcCHHHHHHHHhcC
Confidence 3456688999999999999999999988653
No 21
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=22.66 E-value=35 Score=34.18 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=26.5
Q ss_pred cCCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 379 YGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 379 yGd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
...+-+.+..|||||..||-.+++++..++.
T Consensus 279 ~~~~p~~d~~vRqAi~~aiDr~~i~~~~~~g 309 (517)
T 1jet_A 279 NQKAPFNDVRVRTALKLALDRDIIVNKVKNQ 309 (517)
T ss_dssp TTSTTTTSHHHHHHHHHHSCHHHHHHTTTCS
T ss_pred CCCCccCCHHHHHHHHHhcCHHHHHHHHhcC
Confidence 3456688999999999999999999998654
No 22
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=22.45 E-value=34 Score=34.22 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 380 GEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 380 Gd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
..+-+.+..|||||..||-++++|+..++.
T Consensus 296 ~~~p~~d~~vRqAi~~AiDr~~i~~~~~~g 325 (529)
T 4gl8_A 296 KVKPLDNVKVRKALSFAIDRKTLTESVLND 325 (529)
T ss_dssp TSTTTTCHHHHHHHHHTSCHHHHHHHTTCS
T ss_pred ccCcccCHHHHHHHHhccCHHHHHHHHhCC
Confidence 445677889999999999999999998764
No 23
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=22.33 E-value=70 Score=32.09 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=27.5
Q ss_pred ceEEEEeCCcchHHHHHHHhhcCceEEEEcc
Q 009849 12 SNYLLISGDRDFSNALHQLRMRRYNILLAQP 42 (524)
Q Consensus 12 AnIvLISGDrDFS~ALh~LRmR~YNILLA~P 42 (524)
--+|.+||-.|=+.+++.|+..||+|+.++=
T Consensus 19 kVvVa~SGGvDSsv~a~lL~~~G~~V~~v~~ 49 (380)
T 2der_A 19 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFM 49 (380)
T ss_dssp EEEEECCSCSTTHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEEEChHHHHHHHHHHHHcCCeEEEEEE
Confidence 4578899999999999999999999988773
No 24
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=22.07 E-value=31 Score=34.81 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=26.4
Q ss_pred cCCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 379 YGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 379 yGd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
...+-+.+..|||||..||-.+.+++..++.
T Consensus 278 ~~~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 308 (521)
T 3tpa_A 278 TTKPELNNVKVRQALHHATDKKAIVDAVYQG 308 (521)
T ss_dssp TTSTTTTSHHHHHHHHHTCCHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHhhCHHHHHHHHhcC
Confidence 3456688999999999999999999998653
No 25
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.88 E-value=85 Score=23.50 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=22.8
Q ss_pred ceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 12 SNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 12 AnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
-+|++|.+|..+...|. .|+..||.|..+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 36 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETT 36 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEec
Confidence 47899988888777666 5666899987554
No 26
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=21.68 E-value=34 Score=34.09 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 380 GEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 380 Gd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
..+-+.+..|||||..||-.+++++..++.
T Consensus 272 ~~~p~~d~~vRqAi~~AiDr~~i~~~~~~g 301 (507)
T 1dpe_A 272 QKKPLDDVKVRQALTYAVNKDAIIKAVYQG 301 (507)
T ss_dssp TSTTTTSHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CCCcccCcHHHHHHHHhhCHHHHHHHHhcC
Confidence 456688999999999999999999988654
No 27
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.52 E-value=1.1e+02 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=23.3
Q ss_pred CceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 11 PSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 11 PAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~ 35 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAK 35 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Confidence 457899988888877765 6677899887543
No 28
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.51 E-value=1e+02 Score=23.52 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=23.9
Q ss_pred CceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 11 PSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 11 PAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 36 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVS 36 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 568999999988877766 5677899987643
No 29
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.25 E-value=1.1e+02 Score=23.81 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.4
Q ss_pred CCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 10 APSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 10 pPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
.+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~ 37 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVH 37 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 3568999999988888776 5667889976654
No 30
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=21.23 E-value=42 Score=27.90 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHhC
Q 009849 434 PKEVWDRIQKFLTS 447 (524)
Q Consensus 434 pK~~WD~Iq~FisS 447 (524)
+.+||++++-||..
T Consensus 39 TeeFW~DL~gFL~q 52 (75)
T 2lo0_A 39 TEAFWDDLQGFLEQ 52 (75)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44599999999965
No 31
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.06 E-value=1.1e+02 Score=23.69 Aligned_cols=32 Identities=6% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 10 APSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 10 pPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
...+|+||.+|..+...|. .|+..||.|..+.
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 34 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLS 34 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeC
No 32
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A*
Probab=20.94 E-value=42 Score=34.57 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 380 GEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 380 Gd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
..+-+.+..|||||..||-.+++++..++.
T Consensus 274 ~~~p~~d~~vRqAl~~AIDr~~i~~~~~~g 303 (592)
T 2o7i_A 274 TKPGLSDPAVRKAIAYAIPYNEMLKKAYFG 303 (592)
T ss_dssp TSTTTTSHHHHHHHHHHSCHHHHHHHTTTT
T ss_pred CCcccCCHHHHHHHHHhcCHHHHHHHHhcC
Confidence 345688899999999999999999988643
No 33
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.85 E-value=1.2e+02 Score=24.17 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCCCceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 8 NPAPSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 8 NPpPAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
+-.+.+|+||.+|..+...|. .|+..||.|..+.
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 2rjn_A 4 NYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFT 38 (154)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 345678999999988887776 5666899887543
No 34
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein; TM1223, periplasmic oligopepti binding, structural genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP: c.94.1.1
Probab=20.55 E-value=42 Score=34.10 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHHHHhcCC
Q 009849 380 GEPKHRNTDVRKALNCAIEQHMVIKRSLGA 409 (524)
Q Consensus 380 Gd~k~~~~DVkKaLe~Ai~~q~vvk~~lg~ 409 (524)
..+-+.+..|||||..||-.+++++..++.
T Consensus 275 ~~~p~~d~~vRqAi~~AIDr~~i~~~~~~g 304 (547)
T 1vr5_A 275 NKYPLSIPEFRRAMAYAINPEKIVTRAYEN 304 (547)
T ss_dssp TSTTTTCHHHHHHHHHHCCHHHHHHHTTTT
T ss_pred CCCcccCHHHHHHHHHhhCHHHHHHHHhcC
Confidence 345678899999999999999999998654
No 35
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=20.51 E-value=59 Score=29.17 Aligned_cols=29 Identities=31% Similarity=0.272 Sum_probs=23.1
Q ss_pred eEEEEeCCcchHHHHHHHhhcCceEEEEc
Q 009849 13 NYLLISGDRDFSNALHQLRMRRYNILLAQ 41 (524)
Q Consensus 13 nIvLISGDrDFS~ALh~LRmR~YNILLA~ 41 (524)
-+|++||..|=+.+|+.|+..||+|..++
T Consensus 9 v~v~~SGG~DS~~ll~ll~~~g~~v~~~~ 37 (203)
T 3k32_A 9 VHVLFSGGKDSSLSAVILKKLGYNPHLIT 37 (203)
T ss_dssp EEEECCCSHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEEECcHHHHHHHHHHHHcCCCeEEEE
Confidence 35788888888888888888888887765
No 36
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.42 E-value=1.1e+02 Score=24.02 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=22.9
Q ss_pred CceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 11 PSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 11 PAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
+.+|+||-+|..+...|. .|+..||.|..+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~ 35 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAA 35 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 567888888888777766 5666789887553
No 37
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.19 E-value=1e+02 Score=23.53 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=23.8
Q ss_pred CceEEEEeCCcchHHHHH-HHhhcCceEEEEc
Q 009849 11 PSNYLLISGDRDFSNALH-QLRMRRYNILLAQ 41 (524)
Q Consensus 11 PAnIvLISGDrDFS~ALh-~LRmR~YNILLA~ 41 (524)
..+|++|.+|..+...|. .|+..||.|..+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~ 34 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVM 34 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEES
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 357899999988877766 5677899887664
No 38
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=20.11 E-value=61 Score=32.39 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.0
Q ss_pred ceEEEEeCCcchHHHHHHHhhcCceEEEEc
Q 009849 12 SNYLLISGDRDFSNALHQLRMRRYNILLAQ 41 (524)
Q Consensus 12 AnIvLISGDrDFS~ALh~LRmR~YNILLA~ 41 (524)
--+|.+||-.|=+.+++.|+..||+|+.++
T Consensus 11 kVlVa~SGGvDSsv~a~lL~~~G~~V~~v~ 40 (376)
T 2hma_A 11 RVVVGMSGGVDSSVTALLLKEQGYDVIGIF 40 (376)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEeCHHHHHHHHHHHHHcCCcEEEEE
Confidence 456899999999999999999999998877
Done!