BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009850
(524 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG EA E ++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG EA E ++
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQG 223
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG EA E ++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQG 223
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 234
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG EA E ++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 234
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG EA E ++
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQG 223
NLG A +Q +Y EA + Y++AL + P+N + NLG KQG
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKE---TLRRV 235
GNL +Q A D YRRA+ + P + CNL L ++G + EA++ T R+
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 236 KPAVADGPR----------GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 285
P AD ++ ++ Y +A ++ + + N +Q +L +A +
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNKMCNLGICLMKQGRIGEA----KETLR 233
L NL +Q N EA YR+AL + P+ NL L +QG++ EA KE +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI- 366
Query: 234 RVKPAVADGPRGVDSHLK 251
R+ P AD + + LK
Sbjct: 367 RISPTFADAYSNMGNTLK 384
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRVKPAV 239
NL AL ++ + EAED Y AL + P + + + NL +QG I EA +R + A+
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA---VRLYRKAL 332
Query: 240 ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV 275
P +H QQ K E+ M K R+
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR---VK 236
NLG L + + A AY RALS++P++ + NL +QG I A +T RR ++
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 237 PAVADGPRGVDSHLK 251
P D + + LK
Sbjct: 268 PHFPDAYCNLANALK 282
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNKMCNLGICLMKQGRIGEA----KETLR 233
L NL +Q N EA YR+AL + P+ NL L +QG++ EA KE +
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI- 70
Query: 234 RVKPAVADGPRGVDSHLKAYERAQQMLK 261
R+ P AD + + LK + Q L+
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQ 98
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETL 232
EA + LGN A +Q +Y +A + Y++AL + P+N + NLG KQG +A E
Sbjct: 10 EAWKNLGN---AYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 233 RRV 235
++
Sbjct: 67 QKA 69
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235
NLG A +Q +Y +A + Y++AL + P+N K G KQG +A E ++
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 143 LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202
+Y + A++ Q + + ++ ++ G +G AL N ++EA Y++A
Sbjct: 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106
Query: 203 LSIAPDNNKM-CNLGICLMK 221
L + PDN NL I +K
Sbjct: 107 LELDPDNETYKSNLKIAELK 126
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGE 227
+SV L LG L N EA AYRRAL + P + NLGI + +G
Sbjct: 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN---LGA 300
Query: 228 AKETLRRVKPAV-----ADGPRG 245
+E + A+ + GPRG
Sbjct: 301 HREAVEHFLEALNMQRKSRGPRG 323
>pdb|2KHJ|A Chain A, Nmr Structure Of The Domain 6 Of The E. Coli Ribosomal
Protein S1
Length = 109
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264
+ P + M N + L K+G I K T K A + GV+ +L+A E ++ ++D
Sbjct: 14 LVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVED-- 71
Query: 265 SEMMNKGGDRVE 276
+ ++ GD VE
Sbjct: 72 ATLVLSVGDEVE 83
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGE 227
+SV L LG L N EA AYRRAL + P + NLGI + +G
Sbjct: 195 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN---LGA 251
Query: 228 AKETLRRVKPAV-----ADGPRG 245
+E + A+ + GPRG
Sbjct: 252 HREAVEHFLEALNMQRKSRGPRG 274
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGE 227
+SV L LG L N EA AYRRAL + P + NLGI + +G
Sbjct: 204 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN---LGA 260
Query: 228 AKETLRRVKPAV-----ADGPRG 245
+E + A+ + GPRG
Sbjct: 261 HREAVEHFLEALNMQRKSRGPRG 283
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGE 227
+SV L LG L N EA AYRRAL + P + NLGI + +G
Sbjct: 204 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN---LGA 260
Query: 228 AKETLRRVKPAV-----ADGPRG 245
+E + A+ + GPRG
Sbjct: 261 HREAVEHFLEALNMQRKSRGPRG 283
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGE 227
+SV L LG L N EA AYRRAL + P + NLGI + +G
Sbjct: 181 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN---LGA 237
Query: 228 AKETLRRVKPAV-----ADGPRG 245
+E + A+ + GPRG
Sbjct: 238 HREAVEHFLEALNMQRKSRGPRG 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,804,894
Number of Sequences: 62578
Number of extensions: 593053
Number of successful extensions: 1316
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 43
length of query: 524
length of database: 14,973,337
effective HSP length: 103
effective length of query: 421
effective length of database: 8,527,803
effective search space: 3590205063
effective search space used: 3590205063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)