Query 009850
Match_columns 524
No_of_seqs 555 out of 3526
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.9E-31 4.2E-36 270.2 19.8 289 24-317 195-507 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.8E-28 4E-33 248.7 16.5 304 5-311 142-469 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-22 4.9E-27 221.5 29.2 229 43-299 328-577 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 9.2E-21 2E-25 208.7 32.1 248 48-299 129-502 (615)
5 PRK15174 Vi polysaccharide exp 99.9 7.7E-20 1.7E-24 201.7 33.0 260 38-299 68-387 (656)
6 PRK15174 Vi polysaccharide exp 99.9 1.2E-19 2.7E-24 200.1 32.1 257 28-298 91-408 (656)
7 KOG1126 DNA-binding cell divis 99.9 3.9E-21 8.5E-26 198.7 17.3 211 40-299 415-626 (638)
8 PRK11447 cellulose synthase su 99.8 7.2E-19 1.6E-23 206.1 30.2 270 29-301 285-674 (1157)
9 PRK09782 bacteriophage N4 rece 99.8 1.4E-18 3E-23 196.6 30.2 231 43-301 472-714 (987)
10 TIGR02521 type_IV_pilW type IV 99.8 4.9E-18 1.1E-22 161.7 27.1 203 45-294 30-233 (234)
11 PRK09782 bacteriophage N4 rece 99.8 1.8E-18 4E-23 195.7 28.0 222 52-298 515-745 (987)
12 TIGR02917 PEP_TPR_lipo putativ 99.8 2.7E-18 5.9E-23 195.7 29.2 267 30-301 584-874 (899)
13 PRK11447 cellulose synthase su 99.8 2E-18 4.4E-23 202.4 28.7 224 51-301 274-532 (1157)
14 TIGR02917 PEP_TPR_lipo putativ 99.8 3.7E-18 8E-23 194.5 29.3 269 30-301 516-807 (899)
15 PRK11189 lipoprotein NlpI; Pro 99.8 1.5E-18 3.3E-23 173.5 22.9 206 46-297 64-269 (296)
16 PRK11788 tetratricopeptide rep 99.8 6.7E-18 1.4E-22 175.5 28.3 253 45-299 34-317 (389)
17 KOG1126 DNA-binding cell divis 99.8 1.3E-19 2.8E-24 187.6 13.5 213 48-309 355-602 (638)
18 PRK11788 tetratricopeptide rep 99.8 7E-18 1.5E-22 175.4 25.9 215 80-297 35-282 (389)
19 KOG1125 TPR repeat-containing 99.8 2.1E-18 4.5E-23 176.1 19.4 227 50-299 289-533 (579)
20 PRK12370 invasion protein regu 99.8 6.9E-18 1.5E-22 183.1 24.8 204 49-301 261-478 (553)
21 COG3063 PilF Tfp pilus assembl 99.8 2.5E-17 5.5E-22 151.0 22.6 207 46-299 35-242 (250)
22 KOG0547 Translocase of outer m 99.8 6.1E-18 1.3E-22 168.9 19.8 228 46-301 326-574 (606)
23 PRK12370 invasion protein regu 99.8 3.6E-17 7.7E-22 177.6 25.7 204 37-291 286-500 (553)
24 COG3063 PilF Tfp pilus assembl 99.8 1.1E-17 2.4E-22 153.3 16.0 200 80-333 35-238 (250)
25 PRK10049 pgaA outer membrane p 99.8 5.6E-16 1.2E-20 174.4 30.9 307 40-361 77-479 (765)
26 KOG0624 dsRNA-activated protei 99.7 3.2E-16 6.8E-21 150.6 22.8 256 44-301 36-378 (504)
27 KOG1155 Anaphase-promoting com 99.7 2.7E-16 5.8E-21 156.5 22.9 203 42-293 258-495 (559)
28 KOG1173 Anaphase-promoting com 99.7 1.3E-16 2.9E-21 162.3 20.9 212 39-299 305-524 (611)
29 KOG0547 Translocase of outer m 99.7 2E-16 4.4E-21 158.2 21.8 252 48-301 117-499 (606)
30 KOG1129 TPR repeat-containing 99.7 1.7E-16 3.8E-21 151.5 20.4 225 50-303 227-468 (478)
31 KOG1155 Anaphase-promoting com 99.7 1.5E-16 3.3E-21 158.3 20.4 210 45-296 329-539 (559)
32 COG2956 Predicted N-acetylgluc 99.7 1E-16 2.2E-21 153.2 17.9 320 50-431 39-373 (389)
33 PRK11189 lipoprotein NlpI; Pro 99.7 1.8E-15 3.9E-20 151.4 27.6 165 37-234 89-261 (296)
34 PF13429 TPR_15: Tetratricopep 99.7 3E-17 6.4E-22 163.2 13.9 242 49-293 11-277 (280)
35 PRK10049 pgaA outer membrane p 99.7 5E-15 1.1E-19 166.7 29.6 286 29-319 31-412 (765)
36 KOG1156 N-terminal acetyltrans 99.7 4E-16 8.8E-21 160.9 15.7 339 42-426 3-363 (700)
37 PLN02789 farnesyltranstransfer 99.7 4.6E-15 9.9E-20 148.8 22.3 220 48-309 39-266 (320)
38 TIGR02521 type_IV_pilW type IV 99.7 9.9E-15 2.1E-19 138.8 23.4 172 38-235 57-229 (234)
39 KOG1125 TPR repeat-containing 99.7 2.9E-15 6.3E-20 153.3 19.5 185 29-239 301-528 (579)
40 KOG2076 RNA polymerase III tra 99.7 1.3E-14 2.7E-19 154.9 25.1 243 43-315 136-498 (895)
41 PF13429 TPR_15: Tetratricopep 99.7 5.4E-17 1.2E-21 161.3 6.7 222 75-303 5-253 (280)
42 KOG0548 Molecular co-chaperone 99.7 1.3E-14 2.9E-19 147.3 21.8 233 46-301 224-463 (539)
43 KOG1173 Anaphase-promoting com 99.7 1.8E-14 3.9E-19 146.9 22.3 245 40-312 238-503 (611)
44 KOG1840 Kinesin light chain [C 99.6 1.7E-14 3.8E-19 150.9 22.9 232 42-291 195-477 (508)
45 TIGR03302 OM_YfiO outer membra 99.6 2E-14 4.4E-19 138.9 21.2 188 43-239 30-233 (235)
46 KOG2076 RNA polymerase III tra 99.6 8.7E-14 1.9E-18 148.6 26.8 237 37-296 164-515 (895)
47 KOG1174 Anaphase-promoting com 99.6 4.4E-14 9.6E-19 138.9 22.0 234 40-301 226-508 (564)
48 PRK15359 type III secretion sy 99.6 1.1E-14 2.5E-19 129.5 15.3 127 65-222 12-139 (144)
49 KOG2002 TPR-containing nuclear 99.6 2E-14 4.3E-19 154.4 19.1 252 49-301 131-417 (1018)
50 PRK10747 putative protoheme IX 99.6 2.1E-13 4.6E-18 142.2 26.4 240 49-319 87-380 (398)
51 KOG1129 TPR repeat-containing 99.6 5.8E-15 1.3E-19 141.2 11.9 222 24-273 234-472 (478)
52 PLN02789 farnesyltranstransfer 99.6 4.6E-13 1E-17 134.4 25.6 192 37-277 62-268 (320)
53 TIGR00540 hemY_coli hemY prote 99.6 9.4E-13 2E-17 137.9 28.4 234 42-299 114-372 (409)
54 TIGR03302 OM_YfiO outer membra 99.6 2.1E-13 4.5E-18 131.8 21.8 174 75-295 28-234 (235)
55 KOG2003 TPR repeat-containing 99.6 5.4E-14 1.2E-18 139.4 15.8 245 31-303 437-699 (840)
56 KOG0548 Molecular co-chaperone 99.6 1.7E-13 3.8E-18 139.3 19.7 247 50-299 6-427 (539)
57 PRK15359 type III secretion sy 99.6 7.9E-14 1.7E-18 124.1 15.4 126 100-277 13-139 (144)
58 KOG2002 TPR-containing nuclear 99.6 7E-13 1.5E-17 142.6 24.2 254 42-299 266-565 (1018)
59 PRK10747 putative protoheme IX 99.6 4.4E-12 9.5E-17 132.3 29.5 242 46-294 117-391 (398)
60 cd05804 StaR_like StaR_like; a 99.5 1.3E-12 2.7E-17 134.2 23.3 212 42-296 2-218 (355)
61 KOG4162 Predicted calmodulin-b 99.5 1.6E-12 3.5E-17 137.0 24.1 260 38-299 470-789 (799)
62 PRK10370 formate-dependent nit 99.5 5E-13 1.1E-17 125.4 17.0 123 93-243 52-178 (198)
63 KOG0550 Molecular chaperone (D 99.5 1.9E-13 4.1E-18 134.8 14.3 246 48-296 51-353 (486)
64 PRK14574 hmsH outer membrane p 99.5 6.2E-12 1.3E-16 140.3 28.2 285 28-318 83-502 (822)
65 PRK10370 formate-dependent nit 99.5 1.9E-12 4.1E-17 121.5 20.3 125 59-211 52-179 (198)
66 PRK14574 hmsH outer membrane p 99.5 5E-12 1.1E-16 141.1 25.3 202 38-288 26-227 (822)
67 KOG0495 HAT repeat protein [RN 99.5 1.3E-11 2.8E-16 127.8 25.4 261 38-301 576-854 (913)
68 COG5010 TadD Flp pilus assembl 99.5 5.2E-12 1.1E-16 118.7 20.5 178 61-288 48-226 (257)
69 PRK15179 Vi polysaccharide bio 99.5 2.6E-12 5.5E-17 140.9 21.0 144 40-211 80-223 (694)
70 PRK15179 Vi polysaccharide bio 99.5 5.6E-12 1.2E-16 138.2 22.8 165 51-243 54-222 (694)
71 cd05804 StaR_like StaR_like; a 99.5 3.1E-11 6.8E-16 123.9 26.3 219 45-292 42-292 (355)
72 TIGR00540 hemY_coli hemY prote 99.5 2.8E-11 6E-16 126.8 26.1 242 31-293 136-399 (409)
73 TIGR02552 LcrH_SycD type III s 99.4 7E-12 1.5E-16 110.1 15.8 117 67-211 4-120 (135)
74 KOG0495 HAT repeat protein [RN 99.4 6.8E-11 1.5E-15 122.5 24.8 257 38-299 610-886 (913)
75 COG4783 Putative Zn-dependent 99.4 1.9E-11 4.1E-16 123.7 20.0 195 8-234 238-433 (484)
76 COG5010 TadD Flp pilus assembl 99.4 2.7E-11 5.8E-16 113.9 19.3 166 40-234 61-227 (257)
77 KOG1840 Kinesin light chain [C 99.4 8.1E-12 1.7E-16 131.0 17.4 187 76-296 195-399 (508)
78 KOG0553 TPR repeat-containing 99.4 2.1E-12 4.5E-17 123.5 11.2 118 177-317 82-200 (304)
79 KOG0550 Molecular chaperone (D 99.4 6E-12 1.3E-16 124.3 14.0 171 45-241 168-353 (486)
80 COG2956 Predicted N-acetylgluc 99.4 2.2E-10 4.8E-15 110.1 22.9 232 32-268 54-320 (389)
81 KOG2003 TPR repeat-containing 99.3 8.5E-11 1.8E-15 117.0 20.0 203 38-242 482-693 (840)
82 KOG0553 TPR repeat-containing 99.3 1.6E-11 3.5E-16 117.5 13.7 118 48-193 83-200 (304)
83 KOG0624 dsRNA-activated protei 99.3 7.5E-11 1.6E-15 114.0 18.2 198 76-301 34-260 (504)
84 PLN03081 pentatricopeptide (PP 99.3 1.9E-10 4.1E-15 128.9 24.4 243 46-300 259-530 (697)
85 TIGR02552 LcrH_SycD type III s 99.3 7.7E-11 1.7E-15 103.4 15.8 112 101-240 4-116 (135)
86 PLN03218 maturation of RBCL 1; 99.3 2.3E-09 4.9E-14 123.1 31.1 94 47-143 473-569 (1060)
87 KOG1174 Anaphase-promoting com 99.3 1.3E-10 2.9E-15 114.7 17.7 202 45-270 299-511 (564)
88 KOG1128 Uncharacterized conser 99.3 1.6E-11 3.5E-16 128.9 11.1 212 49-294 401-617 (777)
89 PRK15363 pathogenicity island 99.3 1.8E-10 3.9E-15 101.6 15.2 102 77-206 32-133 (157)
90 KOG3060 Uncharacterized conser 99.3 1.9E-09 4.2E-14 100.7 22.2 176 51-272 57-233 (289)
91 PF12569 NARP1: NMDA receptor- 99.3 4.1E-09 8.8E-14 112.0 27.8 245 47-293 5-334 (517)
92 KOG1127 TPR repeat-containing 99.3 1.8E-10 3.9E-15 124.2 17.3 172 60-235 472-656 (1238)
93 COG4783 Putative Zn-dependent 99.2 9.7E-10 2.1E-14 111.5 21.4 153 43-239 303-455 (484)
94 PLN03081 pentatricopeptide (PP 99.2 2.2E-09 4.8E-14 120.3 26.9 241 45-291 289-555 (697)
95 PRK15363 pathogenicity island 99.2 4E-10 8.7E-15 99.4 15.5 101 43-145 32-132 (157)
96 PLN03218 maturation of RBCL 1; 99.2 7.5E-09 1.6E-13 118.9 30.0 245 44-291 435-711 (1060)
97 PRK14720 transcript cleavage f 99.2 9.1E-10 2E-14 122.0 21.7 137 40-205 25-178 (906)
98 KOG4162 Predicted calmodulin-b 99.2 2.2E-09 4.7E-14 113.8 22.9 272 38-312 315-732 (799)
99 PLN03088 SGT1, suppressor of 99.2 4.9E-10 1.1E-14 114.9 16.6 113 49-189 5-117 (356)
100 COG3071 HemY Uncharacterized e 99.2 1.6E-08 3.6E-13 100.2 25.9 240 50-319 88-380 (400)
101 KOG1128 Uncharacterized conser 99.2 9.8E-10 2.1E-14 115.7 16.9 188 76-301 394-590 (777)
102 KOG1127 TPR repeat-containing 99.2 8.5E-10 1.9E-14 119.1 16.7 222 47-293 420-659 (1238)
103 PLN03088 SGT1, suppressor of 99.1 9.8E-10 2.1E-14 112.7 16.4 112 83-222 5-117 (356)
104 KOG1130 Predicted G-alpha GTPa 99.1 1.1E-10 2.4E-15 115.1 8.9 124 176-299 195-350 (639)
105 KOG2376 Signal recognition par 99.1 3.9E-09 8.3E-14 108.9 19.5 214 49-300 15-260 (652)
106 PLN03077 Protein ECB2; Provisi 99.1 1.1E-08 2.5E-13 117.3 24.9 259 27-291 403-718 (857)
107 CHL00033 ycf3 photosystem I as 99.1 3.7E-09 7.9E-14 96.7 16.5 129 96-264 15-154 (168)
108 KOG3060 Uncharacterized conser 99.1 2.3E-08 5.1E-13 93.5 21.6 192 59-299 25-226 (289)
109 KOG1156 N-terminal acetyltrans 99.1 1.5E-08 3.2E-13 105.7 22.2 233 38-298 33-288 (700)
110 PRK10866 outer membrane biogen 99.1 3.7E-08 8E-13 95.4 23.2 181 45-234 31-237 (243)
111 KOG1130 Predicted G-alpha GTPa 99.1 3.6E-10 7.8E-15 111.6 8.8 208 28-235 32-301 (639)
112 PF13525 YfiO: Outer membrane 99.1 3.2E-08 6.8E-13 93.4 21.1 176 45-229 4-198 (203)
113 PRK14720 transcript cleavage f 99.0 1.6E-08 3.5E-13 112.2 21.5 171 38-220 57-268 (906)
114 PRK10153 DNA-binding transcrip 99.0 7.4E-09 1.6E-13 110.6 18.2 142 41-211 332-488 (517)
115 PRK02603 photosystem I assembl 99.0 1.2E-08 2.6E-13 93.7 17.2 125 106-263 25-153 (172)
116 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.2E-09 1.6E-13 88.2 14.5 100 46-145 2-105 (119)
117 PLN03077 Protein ECB2; Provisi 99.0 4E-08 8.6E-13 112.9 25.0 254 27-290 368-651 (857)
118 KOG4340 Uncharacterized conser 99.0 1.1E-08 2.3E-13 97.6 16.7 229 56-288 20-265 (459)
119 COG4235 Cytochrome c biogenesi 99.0 9E-09 2E-13 99.4 15.9 123 61-211 137-262 (287)
120 CHL00033 ycf3 photosystem I as 99.0 1.2E-08 2.7E-13 93.2 15.4 127 58-210 11-154 (168)
121 PRK02603 photosystem I assembl 99.0 1.1E-08 2.5E-13 93.8 15.2 105 79-209 34-153 (172)
122 PRK10866 outer membrane biogen 99.0 1E-07 2.2E-12 92.3 22.5 171 78-289 30-237 (243)
123 PF13414 TPR_11: TPR repeat; P 99.0 2.2E-09 4.8E-14 82.5 8.5 67 45-111 2-69 (69)
124 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.3E-08 2.7E-13 86.7 14.1 106 80-211 2-111 (119)
125 PF09976 TPR_21: Tetratricopep 99.0 3.5E-08 7.5E-13 87.9 16.9 128 49-203 14-145 (145)
126 PF13525 YfiO: Outer membrane 99.0 1.2E-07 2.5E-12 89.6 21.0 162 79-284 4-198 (203)
127 PF04733 Coatomer_E: Coatomer 99.0 8.5E-09 1.8E-13 102.4 13.4 162 48-242 104-269 (290)
128 cd00189 TPR Tetratricopeptide 99.0 1.2E-08 2.5E-13 81.4 11.8 95 49-145 3-97 (100)
129 cd00189 TPR Tetratricopeptide 98.9 1.3E-08 2.9E-13 81.1 11.5 72 40-111 28-99 (100)
130 PF13432 TPR_16: Tetratricopep 98.9 4.6E-09 1E-13 79.7 8.1 65 50-114 1-65 (65)
131 PF14938 SNAP: Soluble NSF att 98.9 7.7E-08 1.7E-12 95.7 18.9 213 46-296 35-269 (282)
132 KOG3785 Uncharacterized conser 98.9 4.9E-08 1.1E-12 95.1 16.1 233 57-299 33-317 (557)
133 PF13414 TPR_11: TPR repeat; P 98.9 8.2E-09 1.8E-13 79.3 8.7 63 175-237 2-66 (69)
134 PRK11906 transcriptional regul 98.9 1.2E-07 2.5E-12 97.1 19.3 157 50-234 259-432 (458)
135 KOG3785 Uncharacterized conser 98.9 1.4E-07 3.1E-12 91.9 18.4 247 47-294 58-423 (557)
136 KOG2376 Signal recognition par 98.9 7.2E-07 1.6E-11 92.5 24.5 197 38-240 38-255 (652)
137 PRK04841 transcriptional regul 98.9 5.9E-07 1.3E-11 103.9 27.1 98 48-145 454-560 (903)
138 COG0457 NrfG FOG: TPR repeat [ 98.9 1.5E-06 3.3E-11 80.4 24.9 202 46-296 59-268 (291)
139 PF12895 Apc3: Anaphase-promot 98.9 1.1E-08 2.3E-13 82.1 8.3 80 129-235 2-84 (84)
140 PF12895 Apc3: Anaphase-promot 98.8 1.1E-08 2.3E-13 82.1 7.9 82 58-142 1-84 (84)
141 PF12569 NARP1: NMDA receptor- 98.8 4.8E-07 1E-11 96.4 22.5 74 79-154 3-76 (517)
142 PF09976 TPR_21: Tetratricopep 98.8 3.1E-07 6.7E-12 81.8 17.7 118 91-235 22-144 (145)
143 COG4235 Cytochrome c biogenesi 98.8 2.3E-07 5E-12 89.7 17.5 120 96-243 138-261 (287)
144 PRK10153 DNA-binding transcrip 98.8 1.7E-07 3.7E-12 100.3 18.3 142 110-299 333-488 (517)
145 PF14938 SNAP: Soluble NSF att 98.8 1.3E-07 2.9E-12 93.9 16.4 190 61-300 30-232 (282)
146 COG3071 HemY Uncharacterized e 98.8 1.9E-06 4.2E-11 85.7 23.6 196 36-236 141-388 (400)
147 PF13432 TPR_16: Tetratricopep 98.8 2E-08 4.4E-13 76.1 7.7 64 121-210 2-65 (65)
148 KOG4648 Uncharacterized conser 98.8 2.9E-09 6.3E-14 103.1 3.6 229 49-301 100-338 (536)
149 PRK15331 chaperone protein Sic 98.8 9.9E-08 2.2E-12 84.7 12.8 100 77-204 34-133 (165)
150 PF04733 Coatomer_E: Coatomer 98.8 5.2E-08 1.1E-12 96.8 11.5 106 172-298 161-270 (290)
151 PRK10803 tol-pal system protei 98.8 2.9E-07 6.4E-12 89.9 16.5 101 45-145 141-246 (263)
152 KOG0543 FKBP-type peptidyl-pro 98.7 2.1E-07 4.5E-12 93.1 14.9 147 119-297 211-359 (397)
153 PRK10803 tol-pal system protei 98.7 2.5E-07 5.3E-12 90.4 15.2 108 81-211 143-252 (263)
154 PF12688 TPR_5: Tetratrico pep 98.7 6.8E-07 1.5E-11 76.4 15.3 99 47-145 2-104 (120)
155 PRK11906 transcriptional regul 98.7 8.9E-07 1.9E-11 90.7 18.8 157 84-289 259-432 (458)
156 COG4785 NlpI Lipoprotein NlpI, 98.7 2.7E-07 5.9E-12 84.5 12.3 182 81-293 66-266 (297)
157 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.7E-07 1.2E-11 92.4 16.3 119 85-234 174-293 (395)
158 PRK15331 chaperone protein Sic 98.7 2.2E-07 4.7E-12 82.6 11.0 98 46-145 37-134 (165)
159 PRK04841 transcriptional regul 98.7 5.2E-06 1.1E-10 96.1 25.6 208 48-293 411-641 (903)
160 COG0457 NrfG FOG: TPR repeat [ 98.6 2.4E-05 5.2E-10 72.3 24.3 171 41-237 90-264 (291)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.2E-06 2.7E-11 89.9 16.6 120 52-202 175-294 (395)
162 PF12688 TPR_5: Tetratrico pep 98.6 1.3E-06 2.8E-11 74.7 13.6 98 81-204 2-103 (120)
163 KOG0543 FKBP-type peptidyl-pro 98.6 1E-06 2.2E-11 88.3 14.8 126 84-235 212-352 (397)
164 KOG1915 Cell cycle control pro 98.6 5.9E-05 1.3E-09 76.6 26.8 261 34-295 162-502 (677)
165 PF14559 TPR_19: Tetratricopep 98.6 2.1E-07 4.5E-12 71.1 7.4 66 56-123 1-66 (68)
166 KOG4340 Uncharacterized conser 98.5 9.2E-06 2E-10 77.9 18.4 217 43-285 41-331 (459)
167 COG4700 Uncharacterized protei 98.5 2.4E-05 5.3E-10 70.3 19.6 154 53-235 63-219 (251)
168 KOG4555 TPR repeat-containing 98.5 4.9E-06 1.1E-10 70.3 14.1 97 49-145 46-144 (175)
169 KOG4234 TPR repeat-containing 98.5 6.9E-07 1.5E-11 80.9 9.3 99 180-299 99-203 (271)
170 PF13371 TPR_9: Tetratricopept 98.5 9.8E-07 2.1E-11 68.4 8.6 63 52-114 1-63 (73)
171 COG4105 ComL DNA uptake lipopr 98.4 6.2E-05 1.4E-09 71.6 21.6 189 45-242 33-237 (254)
172 KOG4648 Uncharacterized conser 98.4 3.3E-07 7.2E-12 89.1 6.4 100 179-299 100-200 (536)
173 PF14559 TPR_19: Tetratricopep 98.4 8.5E-07 1.8E-11 67.7 7.5 64 127-216 2-66 (68)
174 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.7E-06 3.6E-11 88.6 11.5 70 41-110 70-142 (453)
175 KOG1915 Cell cycle control pro 98.4 6.1E-05 1.3E-09 76.5 21.9 255 38-296 65-354 (677)
176 COG1729 Uncharacterized protei 98.4 4.5E-06 9.8E-11 80.0 13.3 106 83-211 144-250 (262)
177 PF13371 TPR_9: Tetratricopept 98.4 1.6E-06 3.5E-11 67.1 8.6 63 123-211 2-64 (73)
178 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.2E-06 2.5E-11 89.8 9.2 67 172-238 71-141 (453)
179 COG4785 NlpI Lipoprotein NlpI, 98.4 1.4E-05 3E-10 73.5 14.9 95 48-144 67-161 (297)
180 KOG1941 Acetylcholine receptor 98.4 1.5E-05 3.3E-10 78.3 15.8 230 47-292 84-359 (518)
181 KOG1070 rRNA processing protei 98.4 6.9E-05 1.5E-09 84.6 22.7 206 41-296 1453-1666(1710)
182 COG4105 ComL DNA uptake lipopr 98.4 0.00016 3.4E-09 68.9 22.1 177 79-296 33-236 (254)
183 COG4700 Uncharacterized protei 98.4 1.6E-05 3.6E-10 71.3 14.5 130 48-204 91-221 (251)
184 KOG1941 Acetylcholine receptor 98.4 1.2E-05 2.6E-10 79.0 14.9 234 49-299 9-281 (518)
185 PF13512 TPR_18: Tetratricopep 98.3 2.1E-05 4.5E-10 68.5 13.8 19 192-210 115-133 (142)
186 COG1729 Uncharacterized protei 98.3 1.7E-05 3.6E-10 76.1 14.3 98 49-146 144-245 (262)
187 KOG3081 Vesicle coat complex C 98.3 8.8E-05 1.9E-09 70.5 18.2 155 48-233 110-265 (299)
188 KOG4555 TPR repeat-containing 98.3 3E-05 6.6E-10 65.6 13.3 89 121-235 48-141 (175)
189 PF13424 TPR_12: Tetratricopep 98.2 3E-06 6.5E-11 66.6 6.5 62 48-109 7-75 (78)
190 PF13512 TPR_18: Tetratricopep 98.2 3.4E-05 7.3E-10 67.2 13.1 102 45-146 9-129 (142)
191 KOG3617 WD40 and TPR repeat-co 98.2 9.2E-05 2E-09 79.6 18.2 111 176-291 858-994 (1416)
192 PF13424 TPR_12: Tetratricopep 98.2 6.9E-06 1.5E-10 64.5 7.5 69 77-145 2-75 (78)
193 KOG4234 TPR repeat-containing 98.2 3.4E-05 7.5E-10 70.1 12.4 102 83-210 98-202 (271)
194 COG3898 Uncharacterized membra 98.2 0.0015 3.2E-08 65.3 24.7 232 41-299 113-364 (531)
195 KOG2796 Uncharacterized conser 98.1 8.3E-05 1.8E-09 70.4 14.2 159 57-243 159-320 (366)
196 PF06552 TOM20_plant: Plant sp 98.1 7.7E-05 1.7E-09 67.1 13.1 87 172-272 21-122 (186)
197 KOG2047 mRNA splicing factor [ 98.1 0.0019 4.2E-08 68.2 24.5 189 38-238 341-540 (835)
198 KOG1070 rRNA processing protei 98.0 0.00028 6E-09 80.0 19.1 201 62-314 1440-1646(1710)
199 KOG3081 Vesicle coat complex C 98.0 0.0011 2.4E-08 63.1 20.1 104 174-298 167-276 (299)
200 KOG2796 Uncharacterized conser 98.0 0.00047 1E-08 65.4 16.8 145 49-219 180-333 (366)
201 KOG2047 mRNA splicing factor [ 98.0 0.00098 2.1E-08 70.4 20.7 250 45-294 386-688 (835)
202 KOG2053 Mitochondrial inherita 98.0 0.00093 2E-08 73.0 21.1 175 57-234 20-215 (932)
203 KOG4642 Chaperone-dependent E3 98.0 1.1E-05 2.4E-10 75.2 5.5 94 180-294 14-108 (284)
204 PF06552 TOM20_plant: Plant sp 97.9 4.4E-05 9.6E-10 68.6 8.8 96 191-300 6-116 (186)
205 KOG3617 WD40 and TPR repeat-co 97.9 0.0017 3.7E-08 70.2 21.9 170 48-235 802-993 (1416)
206 PF13428 TPR_14: Tetratricopep 97.9 2.6E-05 5.6E-10 54.0 5.5 42 47-88 2-43 (44)
207 COG3118 Thioredoxin domain-con 97.9 0.00057 1.2E-08 66.2 16.3 165 42-234 130-297 (304)
208 PF10300 DUF3808: Protein of u 97.9 0.0006 1.3E-08 72.6 18.2 169 39-235 184-373 (468)
209 KOG2610 Uncharacterized conser 97.8 0.00064 1.4E-08 66.6 15.4 200 50-290 70-273 (491)
210 PF13428 TPR_14: Tetratricopep 97.8 3.5E-05 7.5E-10 53.4 5.0 41 177-217 2-43 (44)
211 KOG4642 Chaperone-dependent E3 97.8 5.3E-05 1.2E-09 70.7 7.4 94 51-146 15-108 (284)
212 KOG2610 Uncharacterized conser 97.8 0.00051 1.1E-08 67.2 14.3 156 53-234 110-272 (491)
213 KOG1586 Protein required for f 97.7 0.0045 9.9E-08 57.9 18.5 195 57-300 25-231 (288)
214 KOG1586 Protein required for f 97.7 0.0047 1E-07 57.8 18.5 170 45-235 33-221 (288)
215 PF00515 TPR_1: Tetratricopept 97.7 7.4E-05 1.6E-09 48.4 4.9 34 176-209 1-34 (34)
216 PF04184 ST7: ST7 protein; In 97.7 0.0019 4.1E-08 66.7 17.3 143 85-235 173-321 (539)
217 PF13431 TPR_17: Tetratricopep 97.7 4.2E-05 9E-10 49.7 3.2 33 68-100 1-33 (34)
218 KOG2053 Mitochondrial inherita 97.7 0.036 7.9E-07 61.0 27.0 201 37-242 34-259 (932)
219 PF04184 ST7: ST7 protein; In 97.6 0.0085 1.8E-07 62.1 20.4 134 51-212 173-332 (539)
220 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.8E-08 65.3 14.5 133 49-209 4-140 (280)
221 PF07719 TPR_2: Tetratricopept 97.6 0.00014 3.1E-09 46.9 5.1 34 176-209 1-34 (34)
222 COG3898 Uncharacterized membra 97.6 0.0054 1.2E-07 61.4 18.2 201 86-319 90-313 (531)
223 KOG0545 Aryl-hydrocarbon recep 97.6 0.00047 1E-08 64.7 9.5 105 176-301 178-301 (329)
224 PF13431 TPR_17: Tetratricopep 97.5 0.00012 2.5E-09 47.6 3.3 26 172-197 9-34 (34)
225 KOG0545 Aryl-hydrocarbon recep 97.4 0.0038 8.2E-08 58.8 13.7 115 117-239 179-294 (329)
226 KOG2471 TPR repeat-containing 97.4 0.00084 1.8E-08 68.7 10.1 158 55-222 215-382 (696)
227 PF00515 TPR_1: Tetratricopept 97.4 0.00035 7.7E-09 45.1 4.8 31 82-112 3-33 (34)
228 PF07719 TPR_2: Tetratricopept 97.3 0.00051 1.1E-08 44.2 5.1 31 82-112 3-33 (34)
229 PF03704 BTAD: Bacterial trans 97.3 0.01 2.2E-07 52.5 15.1 60 176-235 62-122 (146)
230 KOG1585 Protein required for f 97.3 0.013 2.8E-07 55.3 15.8 171 45-235 30-216 (308)
231 KOG0376 Serine-threonine phosp 97.3 0.00032 7E-09 71.9 5.8 94 50-145 8-101 (476)
232 KOG1585 Protein required for f 97.3 0.027 5.8E-07 53.2 17.5 177 81-293 32-219 (308)
233 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0083 1.8E-07 59.0 14.6 99 117-238 82-182 (390)
234 PF05843 Suf: Suppressor of fo 97.3 0.0056 1.2E-07 60.8 13.8 125 82-234 3-132 (280)
235 PF13281 DUF4071: Domain of un 97.3 0.036 7.7E-07 56.6 19.6 185 79-299 140-340 (374)
236 COG2976 Uncharacterized protei 97.3 0.024 5.2E-07 51.9 16.3 98 85-209 94-192 (207)
237 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0084 1.8E-07 58.9 14.1 97 47-145 82-182 (390)
238 PF10300 DUF3808: Protein of u 97.2 0.0056 1.2E-07 65.2 14.2 123 58-206 245-377 (468)
239 KOG4507 Uncharacterized conser 97.2 0.0029 6.4E-08 66.1 10.9 90 51-142 218-309 (886)
240 PF03704 BTAD: Bacterial trans 97.2 0.012 2.5E-07 52.1 13.5 95 49-145 9-125 (146)
241 KOG0376 Serine-threonine phosp 97.2 0.00038 8.3E-09 71.4 4.3 98 181-299 9-107 (476)
242 KOG2471 TPR repeat-containing 97.1 0.0061 1.3E-07 62.6 12.1 105 42-146 236-365 (696)
243 KOG0985 Vesicle coat protein c 97.0 0.051 1.1E-06 60.6 18.4 144 45-235 1103-1246(1666)
244 PF13181 TPR_8: Tetratricopept 97.0 0.0014 3.1E-08 42.2 4.3 33 177-209 2-34 (34)
245 COG3118 Thioredoxin domain-con 96.9 0.028 6.1E-07 54.7 14.3 124 176-299 134-271 (304)
246 COG2976 Uncharacterized protei 96.9 0.048 1E-06 49.9 14.6 97 178-297 91-192 (207)
247 COG0790 FOG: TPR repeat, SEL1 96.8 0.11 2.4E-06 51.6 18.9 143 47-223 74-236 (292)
248 KOG3616 Selective LIM binding 96.8 0.034 7.4E-07 59.8 15.1 225 52-298 771-1029(1636)
249 KOG1550 Extracellular protein 96.8 0.16 3.5E-06 55.4 21.1 215 45-294 243-505 (552)
250 COG0790 FOG: TPR repeat, SEL1 96.8 0.37 8E-06 47.8 21.9 164 55-278 50-236 (292)
251 KOG1308 Hsp70-interacting prot 96.7 0.0014 3.1E-08 64.5 4.0 87 92-206 126-212 (377)
252 KOG1308 Hsp70-interacting prot 96.7 0.00077 1.7E-08 66.3 2.1 87 127-239 125-212 (377)
253 KOG2300 Uncharacterized conser 96.7 0.27 5.9E-06 50.9 20.1 165 51-235 328-511 (629)
254 PF13281 DUF4071: Domain of un 96.7 0.098 2.1E-06 53.4 17.0 170 45-243 140-339 (374)
255 KOG3616 Selective LIM binding 96.7 0.044 9.6E-07 59.0 14.6 191 51-288 678-906 (1636)
256 COG3914 Spy Predicted O-linked 96.6 0.0081 1.8E-07 63.2 9.0 110 172-301 61-179 (620)
257 PF13181 TPR_8: Tetratricopept 96.6 0.0041 8.9E-08 39.9 4.2 30 82-111 3-32 (34)
258 PF14561 TPR_20: Tetratricopep 96.6 0.016 3.5E-07 46.8 8.4 80 65-144 7-86 (90)
259 PF08424 NRDE-2: NRDE-2, neces 96.5 0.38 8.2E-06 48.7 20.2 160 37-206 10-184 (321)
260 KOG2300 Uncharacterized conser 96.5 0.13 2.8E-06 53.2 16.2 199 58-299 287-520 (629)
261 PF13174 TPR_6: Tetratricopept 96.4 0.0058 1.2E-07 38.8 4.1 31 82-112 2-32 (33)
262 PF04910 Tcf25: Transcriptiona 96.4 0.074 1.6E-06 54.6 14.3 107 177-299 104-228 (360)
263 PF13174 TPR_6: Tetratricopept 96.4 0.0068 1.5E-07 38.4 4.2 33 177-209 1-33 (33)
264 PF13176 TPR_7: Tetratricopept 96.3 0.0062 1.3E-07 39.9 4.0 28 178-205 1-28 (36)
265 PF02259 FAT: FAT domain; Int 96.3 0.87 1.9E-05 46.2 21.8 220 47-296 30-341 (352)
266 KOG1914 mRNA cleavage and poly 96.2 2.2 4.8E-05 45.1 24.6 72 37-109 11-82 (656)
267 KOG0530 Protein farnesyltransf 96.1 0.24 5.3E-06 47.4 14.8 179 56-278 53-236 (318)
268 PF13176 TPR_7: Tetratricopept 96.0 0.013 2.8E-07 38.4 4.3 26 83-108 2-27 (36)
269 PF08424 NRDE-2: NRDE-2, neces 96.0 0.57 1.2E-05 47.4 18.2 143 67-237 6-182 (321)
270 PF02259 FAT: FAT domain; Int 96.0 0.3 6.5E-06 49.7 16.3 140 44-209 144-342 (352)
271 KOG1550 Extracellular protein 95.9 0.5 1.1E-05 51.6 18.5 143 61-235 227-390 (552)
272 PRK10941 hypothetical protein; 95.9 0.1 2.2E-06 51.2 11.6 67 49-115 184-250 (269)
273 smart00028 TPR Tetratricopepti 95.8 0.013 2.9E-07 35.8 3.7 33 177-209 2-34 (34)
274 KOG4507 Uncharacterized conser 95.8 0.029 6.2E-07 59.0 7.8 108 52-187 613-721 (886)
275 PF12968 DUF3856: Domain of Un 95.8 0.3 6.6E-06 41.1 12.1 100 178-291 9-127 (144)
276 KOG2041 WD40 repeat protein [G 95.7 0.34 7.4E-06 52.2 15.4 135 53-201 741-877 (1189)
277 PF04910 Tcf25: Transcriptiona 95.7 0.47 1E-05 48.8 16.3 153 37-211 31-228 (360)
278 PF08631 SPO22: Meiosis protei 95.6 2.6 5.6E-05 41.7 23.0 127 56-205 3-150 (278)
279 PF12968 DUF3856: Domain of Un 95.6 0.75 1.6E-05 38.8 13.8 105 81-204 8-128 (144)
280 PF09613 HrpB1_HrpK: Bacterial 95.5 0.25 5.4E-06 44.1 11.4 85 47-133 11-95 (160)
281 PRK10941 hypothetical protein; 95.5 0.17 3.8E-06 49.6 11.5 65 177-241 182-247 (269)
282 KOG1258 mRNA processing protei 95.4 4.8 0.0001 43.2 25.4 247 39-285 72-421 (577)
283 KOG0985 Vesicle coat protein c 95.3 2.5 5.5E-05 47.9 20.5 228 46-290 984-1246(1666)
284 smart00028 TPR Tetratricopepti 95.2 0.034 7.4E-07 33.8 4.0 30 48-77 3-32 (34)
285 PF14561 TPR_20: Tetratricopep 95.1 0.14 3E-06 41.4 8.1 63 172-234 18-83 (90)
286 COG4649 Uncharacterized protei 95.1 1.9 4.2E-05 38.9 15.7 145 49-219 61-210 (221)
287 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.13 2.9E-06 36.9 6.8 35 81-115 2-36 (53)
288 COG2909 MalT ATP-dependent tra 95.0 6.5 0.00014 44.2 22.7 188 48-235 417-644 (894)
289 PF04781 DUF627: Protein of un 94.9 0.22 4.8E-06 41.5 8.8 104 52-206 2-108 (111)
290 KOG1914 mRNA cleavage and poly 94.9 4.1 8.8E-05 43.2 19.8 175 38-238 271-464 (656)
291 PF09613 HrpB1_HrpK: Bacterial 94.9 0.44 9.6E-06 42.5 11.3 121 80-230 10-130 (160)
292 PF10602 RPN7: 26S proteasome 94.9 0.5 1.1E-05 43.4 12.1 103 80-206 36-143 (177)
293 PF10602 RPN7: 26S proteasome 94.9 0.59 1.3E-05 42.9 12.6 99 176-293 36-142 (177)
294 PF09986 DUF2225: Uncharacteri 94.9 0.8 1.7E-05 43.4 13.7 108 93-217 90-208 (214)
295 KOG3824 Huntingtin interacting 94.8 0.091 2E-06 51.3 7.3 71 121-217 121-192 (472)
296 KOG1258 mRNA processing protei 94.8 5.5 0.00012 42.7 20.9 148 56-230 265-421 (577)
297 PF09986 DUF2225: Uncharacteri 94.8 0.24 5.1E-06 47.0 10.1 88 58-145 89-194 (214)
298 PF04781 DUF627: Protein of un 94.8 0.23 5E-06 41.4 8.6 44 99-144 63-106 (111)
299 PF08631 SPO22: Meiosis protei 94.8 3.6 7.9E-05 40.6 19.0 159 90-264 3-176 (278)
300 PRK15180 Vi polysaccharide bio 94.8 0.13 2.8E-06 53.1 8.4 129 55-211 298-426 (831)
301 KOG3783 Uncharacterized conser 94.6 2.6 5.7E-05 44.6 17.7 237 37-294 258-521 (546)
302 COG2909 MalT ATP-dependent tra 94.6 6.4 0.00014 44.2 21.3 190 81-291 416-645 (894)
303 PF13374 TPR_10: Tetratricopep 94.5 0.086 1.9E-06 35.1 4.7 29 177-205 3-31 (42)
304 KOG2041 WD40 repeat protein [G 94.3 1.3 2.9E-05 48.0 14.8 183 62-290 679-878 (1189)
305 PF07079 DUF1347: Protein of u 94.3 1.8 4E-05 44.8 15.3 59 176-235 460-521 (549)
306 PF14853 Fis1_TPR_C: Fis1 C-te 94.2 0.23 5.1E-06 35.6 6.4 42 48-89 3-44 (53)
307 COG3914 Spy Predicted O-linked 93.8 3.2 6.9E-05 44.4 16.4 39 172-210 97-136 (620)
308 KOG3824 Huntingtin interacting 93.6 0.21 4.6E-06 48.8 6.8 65 50-114 120-184 (472)
309 KOG2396 HAT (Half-A-TPR) repea 93.5 0.76 1.6E-05 48.0 11.1 85 99-211 90-175 (568)
310 COG4976 Predicted methyltransf 93.5 0.099 2.2E-06 49.1 4.3 59 127-211 6-64 (287)
311 KOG3807 Predicted membrane pro 93.4 8.1 0.00018 38.5 17.4 92 180-271 279-403 (556)
312 COG4976 Predicted methyltransf 93.2 0.14 3.1E-06 48.0 4.9 60 54-113 3-62 (287)
313 KOG2581 26S proteasome regulat 93.2 3 6.6E-05 42.6 14.4 144 46-211 124-282 (493)
314 KOG1464 COP9 signalosome, subu 93.2 2.7 5.9E-05 40.6 13.4 197 57-299 38-266 (440)
315 PF13374 TPR_10: Tetratricopep 93.1 0.22 4.8E-06 33.0 4.7 28 82-109 4-31 (42)
316 TIGR02561 HrpB1_HrpK type III 93.0 1.3 2.8E-05 39.0 10.3 82 49-132 13-94 (153)
317 TIGR02561 HrpB1_HrpK type III 92.8 1.5 3.2E-05 38.7 10.3 73 128-226 22-95 (153)
318 PRK15180 Vi polysaccharide bio 92.8 0.66 1.4E-05 48.1 9.3 126 172-320 319-445 (831)
319 KOG2396 HAT (Half-A-TPR) repea 92.5 1.4 3E-05 46.2 11.2 86 64-151 89-175 (568)
320 KOG1839 Uncharacterized protei 92.4 0.95 2.1E-05 52.5 10.9 168 49-234 935-1124(1236)
321 KOG1310 WD40 repeat protein [G 92.3 0.36 7.7E-06 50.6 6.8 106 176-299 374-480 (758)
322 KOG2422 Uncharacterized conser 91.8 20 0.00044 38.5 18.9 156 59-240 251-450 (665)
323 PF12862 Apc5: Anaphase-promot 91.8 0.91 2E-05 36.8 7.6 68 127-211 9-76 (94)
324 COG3629 DnrI DNA-binding trans 91.8 2.3 4.9E-05 41.9 11.5 61 175-235 152-213 (280)
325 PF10345 Cohesin_load: Cohesin 91.7 22 0.00048 39.4 20.7 166 45-235 58-251 (608)
326 PF04053 Coatomer_WDAD: Coatom 91.5 12 0.00026 39.7 17.3 119 56-226 271-390 (443)
327 KOG1310 WD40 repeat protein [G 91.4 0.9 1.9E-05 47.7 8.6 103 41-145 369-474 (758)
328 PF15015 NYD-SP12_N: Spermatog 91.2 4.2 9E-05 41.8 12.8 104 121-235 181-288 (569)
329 KOG1538 Uncharacterized conser 90.8 9.2 0.0002 41.5 15.3 64 41-105 580-657 (1081)
330 PF10345 Cohesin_load: Cohesin 90.6 17 0.00037 40.2 18.5 150 62-235 37-205 (608)
331 PF12862 Apc5: Anaphase-promot 90.3 1.4 3.1E-05 35.6 7.4 56 56-111 8-72 (94)
332 KOG0890 Protein kinase of the 90.2 22 0.00048 44.3 19.5 98 174-273 1668-1798(2382)
333 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2.2 4.7E-05 33.2 7.4 57 49-105 9-68 (80)
334 KOG3364 Membrane protein invol 89.9 6 0.00013 34.3 10.8 70 45-114 31-105 (149)
335 KOG1839 Uncharacterized protei 89.9 1.4 3.1E-05 51.1 9.2 176 83-291 935-1126(1236)
336 KOG4814 Uncharacterized conser 89.8 2.6 5.7E-05 45.4 10.4 102 118-239 356-458 (872)
337 COG4649 Uncharacterized protei 89.8 7.8 0.00017 35.2 11.9 97 176-292 94-195 (221)
338 COG2912 Uncharacterized conser 89.7 1.8 3.8E-05 42.1 8.5 65 51-115 186-250 (269)
339 KOG4814 Uncharacterized conser 89.7 3.5 7.5E-05 44.5 11.2 96 85-206 359-458 (872)
340 KOG3364 Membrane protein invol 89.7 2.7 5.9E-05 36.4 8.6 62 176-237 32-99 (149)
341 PF07720 TPR_3: Tetratricopept 89.6 1.2 2.6E-05 29.2 5.1 33 177-209 2-36 (36)
342 PF07721 TPR_4: Tetratricopept 89.6 0.43 9.4E-06 28.6 2.8 23 178-200 3-25 (26)
343 KOG0530 Protein farnesyltransf 89.4 14 0.0003 35.9 13.9 132 59-235 39-173 (318)
344 PF04053 Coatomer_WDAD: Coatom 88.6 9.2 0.0002 40.5 13.7 102 90-235 271-373 (443)
345 PF10516 SHNi-TPR: SHNi-TPR; 88.2 0.86 1.9E-05 30.2 3.6 30 177-206 2-31 (38)
346 COG3629 DnrI DNA-binding trans 88.1 2.7 5.8E-05 41.4 8.6 81 61-145 136-216 (280)
347 KOG2422 Uncharacterized conser 87.3 30 0.00064 37.3 16.0 182 93-296 251-451 (665)
348 COG2912 Uncharacterized conser 87.3 4.1 8.9E-05 39.7 9.2 59 177-235 182-241 (269)
349 PF07721 TPR_4: Tetratricopept 87.1 0.93 2E-05 27.1 3.1 21 49-69 4-24 (26)
350 PF10579 Rapsyn_N: Rapsyn N-te 87.1 3.4 7.4E-05 32.2 6.9 57 178-234 8-68 (80)
351 PF07720 TPR_3: Tetratricopept 87.0 2.2 4.7E-05 27.9 5.0 21 82-102 3-23 (36)
352 COG1747 Uncharacterized N-term 86.8 47 0.001 35.4 21.6 171 61-236 81-286 (711)
353 PF04190 DUF410: Protein of un 86.6 34 0.00073 33.5 22.1 203 47-277 11-241 (260)
354 COG5107 RNA14 Pre-mRNA 3'-end 86.4 46 0.001 34.9 16.4 165 68-238 290-495 (660)
355 PF10516 SHNi-TPR: SHNi-TPR; 85.7 1.6 3.4E-05 29.0 3.9 28 48-75 3-30 (38)
356 PF07079 DUF1347: Protein of u 85.5 51 0.0011 34.6 26.9 68 42-109 75-157 (549)
357 COG4455 ImpE Protein of avirul 85.1 24 0.00053 33.3 12.6 60 55-114 10-69 (273)
358 COG4941 Predicted RNA polymera 84.8 20 0.00042 36.1 12.5 185 61-299 211-400 (415)
359 PF09670 Cas_Cas02710: CRISPR- 84.5 38 0.00083 35.1 15.6 60 50-109 135-198 (379)
360 PRK13184 pknD serine/threonine 84.5 2.3 5.1E-05 48.9 7.0 104 182-300 481-588 (932)
361 PRK13184 pknD serine/threonine 84.4 47 0.001 38.6 17.3 39 173-211 549-587 (932)
362 KOG3807 Predicted membrane pro 83.8 51 0.0011 33.1 15.4 115 85-240 189-306 (556)
363 COG5159 RPN6 26S proteasome re 83.6 48 0.001 32.7 15.3 49 50-98 7-63 (421)
364 PF15015 NYD-SP12_N: Spermatog 83.1 7.1 0.00015 40.2 8.9 60 118-203 230-289 (569)
365 PF11207 DUF2989: Protein of u 81.8 9.2 0.0002 35.6 8.5 81 56-137 116-199 (203)
366 KOG2114 Vacuolar assembly/sort 81.4 42 0.00091 37.8 14.5 57 87-145 341-397 (933)
367 smart00299 CLH Clathrin heavy 81.2 29 0.00062 29.9 11.4 49 55-104 16-64 (140)
368 PF00244 14-3-3: 14-3-3 protei 80.9 54 0.0012 31.5 14.3 44 192-235 142-195 (236)
369 KOG1538 Uncharacterized conser 80.4 97 0.0021 34.0 16.5 83 50-139 636-726 (1081)
370 PF10373 EST1_DNA_bind: Est1 D 80.3 6.1 0.00013 38.6 7.6 41 195-235 1-42 (278)
371 PF12739 TRAPPC-Trs85: ER-Golg 80.0 53 0.0011 34.5 14.8 169 83-295 211-401 (414)
372 COG5191 Uncharacterized conser 79.8 4.6 9.9E-05 39.9 6.1 77 38-114 99-176 (435)
373 PF10373 EST1_DNA_bind: Est1 D 79.0 7.6 0.00017 37.9 7.8 61 135-221 1-62 (278)
374 PF11207 DUF2989: Protein of u 78.2 24 0.00052 32.9 10.0 77 96-197 122-199 (203)
375 COG3947 Response regulator con 78.0 9.7 0.00021 37.4 7.7 61 83-145 282-342 (361)
376 KOG3783 Uncharacterized conser 77.8 77 0.0017 34.0 14.7 190 49-239 306-521 (546)
377 TIGR03504 FimV_Cterm FimV C-te 77.7 6.2 0.00013 27.1 4.6 25 84-108 3-27 (44)
378 PF14863 Alkyl_sulf_dimr: Alky 76.8 8.1 0.00017 34.0 6.3 53 44-96 68-120 (141)
379 KOG1464 COP9 signalosome, subu 75.9 71 0.0015 31.3 12.7 176 94-299 41-226 (440)
380 COG5191 Uncharacterized conser 75.7 4.7 0.0001 39.8 4.9 76 68-145 95-171 (435)
381 PF12854 PPR_1: PPR repeat 75.5 6.2 0.00014 25.2 4.0 27 207-233 5-31 (34)
382 PF13041 PPR_2: PPR repeat fam 74.9 11 0.00024 26.1 5.6 42 176-217 3-46 (50)
383 PF12854 PPR_1: PPR repeat 74.2 7.2 0.00016 24.9 4.0 25 117-141 8-32 (34)
384 PF11817 Foie-gras_1: Foie gra 74.0 19 0.0004 34.9 8.8 80 62-141 154-243 (247)
385 cd02682 MIT_AAA_Arch MIT: doma 72.8 22 0.00048 27.5 7.1 47 212-272 9-55 (75)
386 KOG0890 Protein kinase of the 72.7 86 0.0019 39.6 15.1 155 48-217 1631-1797(2382)
387 PF10255 Paf67: RNA polymerase 72.6 6.6 0.00014 40.8 5.4 67 120-204 126-192 (404)
388 PF10255 Paf67: RNA polymerase 71.3 20 0.00044 37.2 8.6 62 83-145 125-193 (404)
389 TIGR03504 FimV_Cterm FimV C-te 70.1 8.2 0.00018 26.5 3.7 25 180-204 3-27 (44)
390 PF11817 Foie-gras_1: Foie gra 69.8 18 0.00038 35.1 7.5 79 29-107 161-245 (247)
391 KOG1463 26S proteasome regulat 69.6 1.1E+02 0.0024 30.9 12.8 96 50-145 132-238 (411)
392 PF07163 Pex26: Pex26 protein; 69.3 1.2E+02 0.0026 29.9 13.2 121 51-199 40-181 (309)
393 COG1747 Uncharacterized N-term 68.7 1.7E+02 0.0037 31.4 20.6 189 76-297 62-292 (711)
394 COG3947 Response regulator con 67.6 42 0.00091 33.2 9.2 61 117-203 280-340 (361)
395 KOG1463 26S proteasome regulat 67.4 1.5E+02 0.0032 30.1 17.4 96 183-297 216-320 (411)
396 COG5159 RPN6 26S proteasome re 67.2 1.3E+02 0.0028 29.8 12.4 169 84-288 7-189 (421)
397 KOG0686 COP9 signalosome, subu 67.2 38 0.00082 35.0 9.2 25 117-141 151-175 (466)
398 PF10952 DUF2753: Protein of u 67.0 28 0.00061 29.7 7.0 57 179-235 4-76 (140)
399 COG4455 ImpE Protein of avirul 66.0 29 0.00063 32.9 7.5 61 125-211 10-70 (273)
400 KOG0529 Protein geranylgeranyl 65.6 1.7E+02 0.0038 30.3 14.2 135 58-220 40-194 (421)
401 PF12739 TRAPPC-Trs85: ER-Golg 65.6 1.8E+02 0.0039 30.5 14.7 97 48-145 210-329 (414)
402 smart00386 HAT HAT (Half-A-TPR 65.0 18 0.00039 21.8 4.5 27 61-87 2-28 (33)
403 KOG0276 Vesicle coat complex C 64.9 96 0.0021 33.8 12.0 80 48-145 616-695 (794)
404 TIGR02710 CRISPR-associated pr 64.3 1.6E+02 0.0034 30.6 13.3 55 51-105 135-196 (380)
405 KOG0546 HSP90 co-chaperone CPR 63.8 9.6 0.00021 38.4 4.3 106 123-235 229-335 (372)
406 KOG2581 26S proteasome regulat 63.7 1.8E+02 0.0038 30.3 13.1 130 91-241 137-279 (493)
407 COG3014 Uncharacterized protei 63.2 1.8E+02 0.0039 29.6 12.9 29 118-146 127-155 (449)
408 KOG1920 IkappaB kinase complex 62.6 81 0.0018 37.0 11.6 109 117-235 940-1052(1265)
409 KOG2114 Vacuolar assembly/sort 62.5 74 0.0016 35.9 11.0 55 54-109 342-397 (933)
410 smart00299 CLH Clathrin heavy 62.4 1E+02 0.0022 26.4 13.6 111 126-275 17-136 (140)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 62.0 32 0.0007 29.5 6.8 41 194-234 81-124 (126)
412 PF09797 NatB_MDM20: N-acetylt 61.7 71 0.0015 32.8 10.6 43 62-104 199-241 (365)
413 PF01535 PPR: PPR repeat; Int 60.8 13 0.00028 22.3 3.2 27 178-204 2-28 (31)
414 PF01535 PPR: PPR repeat; Int 59.7 14 0.00031 22.1 3.2 26 119-144 3-28 (31)
415 smart00386 HAT HAT (Half-A-TPR 59.6 20 0.00044 21.5 4.0 28 190-217 1-29 (33)
416 PF09670 Cas_Cas02710: CRISPR- 59.5 2.2E+02 0.0048 29.5 13.9 62 84-145 135-198 (379)
417 KOG0686 COP9 signalosome, subu 59.1 1.2E+02 0.0025 31.6 10.9 60 177-236 188-256 (466)
418 PF04190 DUF410: Protein of un 59.1 1.8E+02 0.0039 28.3 17.8 77 212-293 93-170 (260)
419 PF13041 PPR_2: PPR repeat fam 58.2 46 0.001 22.8 6.0 29 81-109 4-32 (50)
420 KOG4322 Anaphase-promoting com 57.2 2.5E+02 0.0055 29.4 14.8 205 59-300 254-478 (482)
421 PF10952 DUF2753: Protein of u 57.0 57 0.0012 27.9 7.0 58 49-106 4-76 (140)
422 KOG2561 Adaptor protein NUB1, 56.9 1.6E+02 0.0036 30.8 11.6 97 49-145 166-296 (568)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 55.0 54 0.0012 28.1 7.0 80 94-203 40-126 (126)
424 TIGR00756 PPR pentatricopeptid 54.8 26 0.00055 21.4 3.9 27 119-145 3-29 (35)
425 TIGR00756 PPR pentatricopeptid 54.3 27 0.00059 21.2 3.9 26 179-204 3-28 (35)
426 KOG4279 Serine/threonine prote 53.3 43 0.00092 37.3 7.2 131 58-209 255-399 (1226)
427 KOG0276 Vesicle coat complex C 52.8 80 0.0017 34.4 9.0 99 57-205 597-695 (794)
428 KOG0529 Protein geranylgeranyl 52.7 2.9E+02 0.0063 28.8 14.4 108 172-300 105-231 (421)
429 KOG1920 IkappaB kinase complex 52.6 2.6E+02 0.0056 33.2 13.4 24 178-201 941-964 (1265)
430 COG4941 Predicted RNA polymera 52.3 90 0.002 31.5 8.7 61 85-145 334-394 (415)
431 PF13812 PPR_3: Pentatricopept 51.7 39 0.00084 20.6 4.3 27 178-204 3-29 (34)
432 cd02682 MIT_AAA_Arch MIT: doma 51.6 67 0.0014 24.9 6.2 25 49-73 9-33 (75)
433 PF11846 DUF3366: Domain of un 51.6 49 0.0011 30.5 6.8 44 67-111 132-175 (193)
434 PRK12798 chemotaxis protein; R 51.1 3.1E+02 0.0068 28.7 16.4 155 55-235 157-321 (421)
435 KOG0687 26S proteasome regulat 50.6 2E+02 0.0043 29.1 10.7 30 80-109 104-133 (393)
436 PRK11619 lytic murein transgly 49.5 4.2E+02 0.0091 29.7 23.1 29 175-203 345-373 (644)
437 COG5107 RNA14 Pre-mRNA 3'-end 49.5 3.5E+02 0.0075 28.7 21.5 237 38-296 34-334 (660)
438 PF00244 14-3-3: 14-3-3 protei 49.4 1.1E+02 0.0025 29.3 9.0 56 179-234 4-62 (236)
439 KOG2062 26S proteasome regulat 48.7 3.6E+02 0.0078 30.4 13.2 153 48-234 399-562 (929)
440 PF04348 LppC: LppC putative l 48.0 6 0.00013 43.0 0.0 58 178-235 63-124 (536)
441 COG5187 RPN7 26S proteasome re 48.0 2.9E+02 0.0064 27.5 11.8 106 116-241 115-224 (412)
442 KOG4151 Myosin assembly protei 47.8 32 0.00069 38.4 5.4 95 182-297 59-160 (748)
443 cd02680 MIT_calpain7_2 MIT: do 47.3 39 0.00086 26.1 4.4 17 129-145 19-35 (75)
444 KOG0546 HSP90 co-chaperone CPR 47.1 15 0.00031 37.2 2.5 66 49-114 278-343 (372)
445 PF13812 PPR_3: Pentatricopept 46.1 50 0.0011 20.1 4.2 26 49-74 4-29 (34)
446 PF09181 ProRS-C_2: Prolyl-tRN 46.1 4.5 9.7E-05 29.6 -0.9 22 469-490 39-60 (68)
447 PRK11619 lytic murein transgly 46.0 4.7E+02 0.01 29.3 25.2 112 181-292 246-374 (644)
448 PF14863 Alkyl_sulf_dimr: Alky 45.5 74 0.0016 27.9 6.4 54 174-227 68-122 (141)
449 PF09205 DUF1955: Domain of un 45.4 1.2E+02 0.0026 26.5 7.3 55 89-145 95-149 (161)
450 cd02680 MIT_calpain7_2 MIT: do 45.0 36 0.00079 26.3 3.9 19 92-110 18-36 (75)
451 smart00777 Mad3_BUB1_I Mad3/BU 43.7 2E+02 0.0043 24.7 8.6 57 172-234 65-124 (125)
452 KOG4521 Nuclear pore complex, 41.2 7E+02 0.015 29.9 16.2 29 47-75 921-949 (1480)
453 TIGR02710 CRISPR-associated pr 41.0 3E+02 0.0065 28.5 10.9 54 181-234 135-196 (380)
454 PF11846 DUF3366: Domain of un 39.4 84 0.0018 28.9 6.3 49 192-240 127-175 (193)
455 PHA02537 M terminase endonucle 38.8 48 0.001 31.7 4.5 90 57-146 94-208 (230)
456 cd02683 MIT_1 MIT: domain cont 38.4 1.6E+02 0.0036 22.7 6.7 40 212-265 9-48 (77)
457 PF08626 TRAPPC9-Trs120: Trans 38.2 5.3E+02 0.012 31.3 14.1 27 49-75 245-271 (1185)
458 PF04348 LppC: LppC putative l 37.7 11 0.00024 41.1 0.0 96 48-143 26-125 (536)
459 PF04212 MIT: MIT (microtubule 36.7 83 0.0018 23.5 4.8 26 179-204 8-33 (69)
460 PF07219 HemY_N: HemY protein 36.6 1.3E+02 0.0029 24.8 6.5 23 87-109 66-88 (108)
461 smart00671 SEL1 Sel1-like repe 36.4 82 0.0018 19.4 4.1 27 48-74 3-33 (36)
462 COG5187 RPN7 26S proteasome re 35.0 4.7E+02 0.01 26.1 12.5 122 60-208 89-224 (412)
463 PF07163 Pex26: Pex26 protein; 34.8 4.7E+02 0.01 26.0 14.9 119 87-233 42-182 (309)
464 PF09797 NatB_MDM20: N-acetylt 33.8 2.2E+02 0.0048 29.1 9.0 45 95-141 198-242 (365)
465 PF08238 Sel1: Sel1 repeat; I 33.5 96 0.0021 19.6 4.2 29 177-205 2-37 (39)
466 KOG1497 COP9 signalosome, subu 33.5 5.2E+02 0.011 26.1 12.8 99 81-204 104-212 (399)
467 PF04212 MIT: MIT (microtubule 33.2 83 0.0018 23.5 4.3 21 52-72 11-31 (69)
468 smart00777 Mad3_BUB1_I Mad3/BU 33.2 2.1E+02 0.0045 24.6 7.1 45 97-141 80-124 (125)
469 KOG4014 Uncharacterized conser 32.5 4.1E+02 0.0089 24.6 9.8 97 44-145 32-141 (248)
470 KOG1524 WD40 repeat-containing 31.9 3.9E+02 0.0084 28.9 10.0 96 42-142 569-670 (737)
471 PF02064 MAS20: MAS20 protein 31.6 1.2E+02 0.0025 26.0 5.2 29 85-113 68-96 (121)
472 KOG2063 Vacuolar assembly/sort 31.3 8.9E+02 0.019 28.2 18.0 64 49-112 507-576 (877)
473 KOG0687 26S proteasome regulat 31.1 5.8E+02 0.013 25.9 15.0 106 116-241 104-213 (393)
474 cd02681 MIT_calpain7_1 MIT: do 30.8 82 0.0018 24.4 3.9 24 50-73 10-33 (76)
475 cd02677 MIT_SNX15 MIT: domain 30.8 67 0.0014 24.8 3.4 15 94-108 20-34 (75)
476 KOG4279 Serine/threonine prote 30.7 1.7E+02 0.0037 32.8 7.4 180 79-299 200-401 (1226)
477 KOG4563 Cell cycle-regulated h 30.3 91 0.002 31.8 5.0 56 48-103 43-106 (400)
478 KOG2063 Vacuolar assembly/sort 30.3 9.3E+02 0.02 28.0 15.4 92 186-292 601-712 (877)
479 cd02678 MIT_VPS4 MIT: domain c 30.1 2.5E+02 0.0054 21.4 7.3 63 192-282 3-65 (75)
480 COG4259 Uncharacterized protei 29.9 1.7E+02 0.0038 24.0 5.6 39 173-211 69-107 (121)
481 cd02681 MIT_calpain7_1 MIT: do 28.9 1.2E+02 0.0027 23.5 4.6 26 179-204 9-34 (76)
482 COG5600 Transcription-associat 28.8 1.3E+02 0.0029 30.8 5.9 75 117-208 178-252 (413)
483 PF04097 Nic96: Nup93/Nic96; 28.5 6.2E+02 0.013 28.1 11.8 99 47-201 415-530 (613)
484 COG2178 Predicted RNA-binding 27.4 1.3E+02 0.0029 27.9 5.2 91 212-318 32-122 (204)
485 PRK09687 putative lyase; Provi 27.4 6E+02 0.013 25.0 16.8 87 52-144 74-169 (280)
486 KOG4014 Uncharacterized conser 27.1 5.1E+02 0.011 24.0 11.8 66 46-113 68-145 (248)
487 PF05053 Menin: Menin; InterP 25.9 8E+02 0.017 26.9 11.2 82 85-204 262-346 (618)
488 PF07219 HemY_N: HemY protein 25.9 3.1E+02 0.0067 22.5 6.9 46 178-224 61-108 (108)
489 KOG2758 Translation initiation 25.7 7.1E+02 0.015 25.2 15.2 172 64-236 113-315 (432)
490 KOG1497 COP9 signalosome, subu 25.5 7.2E+02 0.016 25.2 18.3 59 176-235 103-170 (399)
491 PF02064 MAS20: MAS20 protein 24.9 1.9E+02 0.004 24.7 5.3 28 51-78 68-95 (121)
492 KOG4151 Myosin assembly protei 24.6 1.6E+02 0.0035 33.0 6.1 99 87-211 60-162 (748)
493 COG2015 Alkyl sulfatase and re 24.4 2.7E+02 0.0059 29.7 7.3 53 46-98 452-504 (655)
494 PF14929 TAF1_subA: TAF RNA Po 23.8 9.8E+02 0.021 26.2 12.0 110 94-235 323-438 (547)
495 PF09205 DUF1955: Domain of un 23.7 5E+02 0.011 22.8 10.1 66 46-111 85-151 (161)
496 KOG3024 Uncharacterized conser 23.1 7.5E+02 0.016 24.6 11.7 29 173-201 124-152 (312)
497 cd02679 MIT_spastin MIT: domai 22.9 1.5E+02 0.0033 23.1 4.1 24 181-204 13-36 (79)
498 COG4259 Uncharacterized protei 22.9 2.4E+02 0.0053 23.2 5.3 36 79-114 71-106 (121)
499 cd00280 TRFH Telomeric Repeat 22.7 2.4E+02 0.0052 26.1 5.8 32 55-87 120-151 (200)
500 PRK15490 Vi polysaccharide bio 22.6 5.5E+02 0.012 28.3 9.6 78 59-140 21-98 (578)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.98 E-value=1.9e-31 Score=270.22 Aligned_cols=289 Identities=17% Similarity=0.121 Sum_probs=220.6
Q ss_pred CCccchhh-hhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 24 KPLGVSRT-RSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEA 102 (524)
Q Consensus 24 ~~~~~l~~-~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~ 102 (524)
+..|++.+ ....++++...|.-.-+|.+||.++..+|+...|+.+|.+|++++|+..++|.+||.+|...+.+++|+.+
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 33443333 44455666666666666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH--------hhhc-ccHHHHHHHhHHHHHhcCC
Q 009850 103 IKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL--------AFNG-KRTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 103 ~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~--------~~~~-~~~~~a~~~~~~~~~~~~p 173 (524)
|.+++...|.++ .++-.+|.+|+.+|..+-|+..|++++++.+.-. ++.. +...+++.+.. ..+.+.|
T Consensus 275 Y~rAl~lrpn~A--~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn-kaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNLRPNHA--VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN-KALRLCP 351 (966)
T ss_pred HHHHHhcCCcch--hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH-HHHHhCC
Confidence 777777777776 5666777777777777777777777777653222 2222 12222222211 1234489
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------- 243 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------- 243 (524)
.++++.+|||++|..+|.+++|...|.++++..|+... +.|||.+|.++|++++|+.+|+.++...|.-.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 99999999999999999999999999999999999988 99999999999999999999999866555432
Q ss_pred ----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccc
Q 009850 244 ----RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADEN 317 (524)
Q Consensus 244 ----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~ 317 (524)
|+.+.|+..|.+++..+|.+++++.|||.+|...|+..+||..|+.++++.|+.+... .+++++.|-+-|..
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~--cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY--CNLLHCLQIVCDWT 507 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh--hHHHHHHHHHhccc
Confidence 7788899999999999999999999999999999999999999999999999998865 24777766555443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-28 Score=248.73 Aligned_cols=304 Identities=18% Similarity=0.157 Sum_probs=258.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCccchhhh-hhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH
Q 009850 5 MWNAPPGFRPTKSAPSSPAKPLGVSRTR-SDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSAL 83 (524)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~ 83 (524)
++..-|.+.-.++..++.....+.+..+ ..-+.++...|....+...+|..+-..|+..+|..+|.+|++.+|..+-+|
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 4445555555566655555555554443 445578888898877888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh---------hhc
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA---------FNG 154 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~---------~~~ 154 (524)
.+||-++..+|+...|+..|+++++++|... .++..||.+|...+.+++|+.+|.+++.+.+.... +.+
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP~f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCCcch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 9999999999999999999999999999997 78899999999999999999999999988754433 222
Q ss_pred ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
+..+.+....+. .+.++|+.+++++|||+++-..|+..+|+++|.++|.+.|.+++ .+|||.+|.++|.+++|...|.
T Consensus 300 G~ldlAI~~Ykr-al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 300 GLLDLAIDTYKR-ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred ccHHHHHHHHHH-HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344444333222 24558999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 234 RVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 234 ~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
+++..+|+-. +.+++|+.+|++++.+.|..++++.|+|..|..+|+...|+.+|.++++.+|...+.
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 9987776542 889999999999999999999999999999999999999999999999999998887
Q ss_pred ccccccccccc
Q 009850 301 LPTTNAIKTRD 311 (524)
Q Consensus 301 l~~~~l~~~~q 311 (524)
..+++.+|-..
T Consensus 459 hsNLasi~kDs 469 (966)
T KOG4626|consen 459 HSNLASIYKDS 469 (966)
T ss_pred HhhHHHHhhcc
Confidence 76645555433
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.3e-22 Score=221.46 Aligned_cols=229 Identities=11% Similarity=0.038 Sum_probs=213.8
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
|....+|..+|.+++..|++++|+..|++++..+|++..+|..+|.++..+|++++|+..|++++..+|+++ .+++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~l 405 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHR 405 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 556678999999999999999999999999999999999999999999999999999999999999999997 788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.++...|++++|+.+|++++.+ +|++..++.++|.++...|++++|+..|+++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l--------------------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDL--------------------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--------------------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999998 8999999999999999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------------CcCHHHHHHHHHHHHHhCC
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------------PRGVDSHLKAYERAQQMLK 261 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------------~~~~~~A~~~~~~al~~~p 261 (524)
+...|+++. +..+|.++..+|++++|+..|++++...+.. .+++++|...+++++..+|
T Consensus 460 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 999999999 9999999999999999999999997665542 1567789999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 262 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 262 ~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
+...++..+|.++..+|++++|+..|++++++.+....
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999988765444
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=9.2e-21 Score=208.71 Aligned_cols=248 Identities=14% Similarity=0.118 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.+..+|..++..|+|++|+..|.+++...|+ +..+.++|.||..+|++++|+..++++++++|++. .+++.+|.+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~--~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS--KALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH
Confidence 3556666666666666666666666666664 45566666666666666666666666666666654 45555566666
Q ss_pred HcCChHHHHH----------------------------------------------------------------------
Q 009850 128 RCGRLDDQIA---------------------------------------------------------------------- 137 (524)
Q Consensus 128 ~~g~~~eA~~---------------------------------------------------------------------- 137 (524)
.+|++++|+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 6666655543
Q ss_pred ------------------------------HHHHHHHHh---h--------ccHhh-hcccHHHHHHHhHHHHHhcCCCc
Q 009850 138 ------------------------------LLKHKLYLI---Q--------QGLAF-NGKRTKTARSQGKKFQVSVEQEA 175 (524)
Q Consensus 138 ------------------------------~~~~al~l~---~--------~~~~~-~~~~~~~a~~~~~~~~~~~~p~~ 175 (524)
.|++++... + .+..+ ..+..+.+...... .+.++|+.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k-al~l~P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK-SIELDPRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCc
Confidence 333333321 0 00011 11233333333222 14558999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----------- 243 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----------- 243 (524)
..+|..+|.++...|++++|+.+|+++++.+|+++. |+++|.++..+|++++|+.+|++++...|+..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999988877753
Q ss_pred --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 244 --RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 244 --~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
+++++|+..|++++...|+.+.++..+|.++..+|++++|+..|++++..+|....
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 77899999999999999999999999999999999999999999999999987654
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=7.7e-20 Score=201.71 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=168.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+...|..+++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++. .
T Consensus 68 ~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--~ 145 (656)
T PRK15174 68 RVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--Q 145 (656)
T ss_pred HHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H
Confidence 34456777777888888888888888888888888888888888888888888888888888888888888888776 5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhcccHHHHHHHhHHH----------------------
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNGKRTKTARSQGKKF---------------------- 167 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~~~~~~a~~~~~~~---------------------- 167 (524)
++..++.++...|++++|+..+++++...+.... +..+....+....+..
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 6667777777778887777777766654422111 1111222222111111
Q ss_pred ------------HHhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHH
Q 009850 168 ------------QVSVEQEATRLLGNLGWALMQQNNYIE----AEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 230 (524)
Q Consensus 168 ------------~~~~~p~~~~a~~~Lg~~~~~~g~~~e----Ai~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~ 230 (524)
.+..+|+++.+++++|.++...|++++ |+..|++++.++|++.. +.++|.++..+|++++|+.
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 123356666666666666666666664 56666666666666666 6666666666666666666
Q ss_pred HHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 231 TLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 231 ~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
.+++++...|+.. +++++|+..|++++...|+....+..+|.++...|++++|+..|+++++.+|.+
T Consensus 306 ~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 306 LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 6666655555543 555666666666666666666555556666666666666666666666666664
Q ss_pred CC
Q 009850 298 DH 299 (524)
Q Consensus 298 ~~ 299 (524)
..
T Consensus 386 ~~ 387 (656)
T PRK15174 386 LP 387 (656)
T ss_pred ch
Confidence 43
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.2e-19 Score=200.08 Aligned_cols=257 Identities=11% Similarity=0.050 Sum_probs=194.0
Q ss_pred chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
....+...+. .+...|..+.+|..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 3444444444 345568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHH--------------------------------HHHHHHHHHcCChHHHHHHHHHHHHHhhccHh---
Q 009850 107 RSRCSDQAQESLD--------------------------------NILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--- 151 (524)
Q Consensus 107 l~~~p~~~~~~l~--------------------------------~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--- 151 (524)
+...|+++..... ..++.++...|++++|+..|+++++..+....
T Consensus 171 ~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 171 AQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888876521110 11233444455555555555555554422211
Q ss_pred -----hh-cccHHH-----HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850 152 -----FN-GKRTKT-----ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219 (524)
Q Consensus 152 -----~~-~~~~~~-----a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~ 219 (524)
+. .+.... ...+.+. +..+|+++.++.++|.++...|++++|+..|++++.++|+++. +.++|.++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~A--l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHA--LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHH--HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11 122221 1222222 4558999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 220 MKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG 286 (524)
Q Consensus 220 ~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~ 286 (524)
...|++++|+..|+++....|... ++.++|+..|+++++..|+... ..+.+|+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~------------~~~~ea~~~ 396 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP------------QSFEEGLLA 396 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch------------hhHHHHHHH
Confidence 999999999999999977666652 7889999999999999998752 445577777
Q ss_pred HhhcccCCCCCC
Q 009850 287 SSSIWQPQPCKD 298 (524)
Q Consensus 287 ~~~al~~~P~~~ 298 (524)
|..++...+...
T Consensus 397 ~~~~~~~~~~~~ 408 (656)
T PRK15174 397 LDGQISAVNLPP 408 (656)
T ss_pred HHHHHHhcCCcc
Confidence 777776554443
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.9e-21 Score=198.67 Aligned_cols=211 Identities=17% Similarity=0.117 Sum_probs=190.4
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
...|..+++|-.+|+++-.+++++.|+++|++|++++|++..+|..+|.-+.....+|.|..+|+.|+..+|.+- ++|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHH
Confidence 345778888999999999999999999999999999999999999999999999999999999999999988874 888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+-+|.+|.++++++.|+-.|++|+++ +|.+......+|.++.+.|+.++|+..|
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~I--------------------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEI--------------------------NPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcC--------------------------CccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 88899999999999999999999888 8888888899999999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 278 (524)
++|+.++|.++. .+..|.++..++++++|+..++ +..++.|+...+++.+|.+|.+.|
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE---------------------eLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE---------------------ELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH---------------------HHHHhCcchHHHHHHHHHHHHHHc
Confidence 999999999988 8889999999999999988888 788889999999999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCC
Q 009850 279 RLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 279 ~~~eAi~~~~~al~~~P~~~~ 299 (524)
+.+.|+..|.-|++++|.-..
T Consensus 606 ~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 606 NTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHhhHHHhcCCCccch
Confidence 999999999999999997554
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=7.2e-19 Score=206.13 Aligned_cols=270 Identities=12% Similarity=0.042 Sum_probs=199.1
Q ss_pred hhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH--------------HHHHHHHHHHc
Q 009850 29 SRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA--------------LKDMAIVMKQQ 93 (524)
Q Consensus 29 l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a--------------~~~La~~~~~~ 93 (524)
...+...+. ++...|...++++.+|.+++..|++++|+.+|+++++.+|++... ...+|.++...
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 344444444 445568888899999999999999999999999999988876431 23457888889
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhh--------hcccHH-------
Q 009850 94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF--------NGKRTK------- 158 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~--------~~~~~~------- 158 (524)
|++++|+..|++++..+|++. .++..+|.+|...|++++|+.+|++++++.+..... .....+
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~--~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDS--YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999887 567788999999999999999999999886443211 000011
Q ss_pred ------------------------------------HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 159 ------------------------------------TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 159 ------------------------------------~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
.+....+ ..+.++|+++.+++.+|.+|...|++++|+..|+++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-QRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 013457888888888888888888888888888888
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc----------------------------------------cccC
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP----------------------------------------AVAD 241 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~----------------------------------------~~~~ 241 (524)
+..+|+++. ++.+|..+...|++++|+..++++.. ..|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 888888777 66666666666666666666554311 1112
Q ss_pred CC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 242 GP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 242 ~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.. ++.++|+..|+++++..|++..++.+++.++...|++++|+..++.++...|.+....
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 11 6778888999999999999999999999999999999999999998888888776644
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=1.4e-18 Score=196.58 Aligned_cols=231 Identities=14% Similarity=0.047 Sum_probs=157.4
Q ss_pred CC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 43 PV--GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 43 p~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
|. .+.+|+.+|.++.. |++++|+..|.+++...|++. ....+|.++...|++++|+..|++++...|.+. .+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~---a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE---DLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH---HHH
Confidence 55 78899999999987 899999999999999999864 466778888899999999999999888766653 356
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhh------hc---ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF------NG---KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN 191 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~------~~---~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~ 191 (524)
.+|.++...|++++|+.+|++++...+..... .. +..+.+....+.. +..+|+ +.++.++|.++.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l~P~-~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS-LNIAPS-ANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHCCC
Confidence 77889999999999999999999883221110 00 2222222221111 223454 5555566666666666
Q ss_pred HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
+++|+.+|++++.++|+++. +.++|.++...|++++|+..|+ ++++..|+++.+++++
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~---------------------~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE---------------------RAHKGLPDDPALIRQL 683 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHH
Confidence 66666666666666666555 5556666666666666665555 6666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 271 GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 271 g~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
|.++..+|++++|+..|++++..+|.+..+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 6666666666666666666666666655533
No 10
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=4.9e-18 Score=161.65 Aligned_cols=203 Identities=16% Similarity=0.108 Sum_probs=182.9
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
....++.+|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+. ..+..+|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999886 67788899
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
++...|++++|+..|++++... ..+.....+.++|.++...|++++|+..|.+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP------------------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc------------------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998651 0245677899999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 283 (524)
.+|++.. +..+|.++...|++++|+..++ +++...|.....+..++.++...|+.++|
T Consensus 164 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 164 IDPQRPESLLELAELYYLRGQYKDARAYLE---------------------RYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred hCcCChHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 9999988 9999999999999999999999 45555677888888999999999999999
Q ss_pred HHHHhhcccCC
Q 009850 284 FLGSSSIWQPQ 294 (524)
Q Consensus 284 i~~~~~al~~~ 294 (524)
....+.+....
T Consensus 223 ~~~~~~~~~~~ 233 (234)
T TIGR02521 223 QRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhhC
Confidence 98877665443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=1.8e-18 Score=195.65 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=152.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~ 131 (524)
+|..+...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|++++..+|+.. .++..++..+...|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~--~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN--ALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhCCC
Confidence 3444445555555555555554443332 3344555555555555555555555555555443 222333333334455
Q ss_pred hHHHHHHHHHHHHHhhccHh-------hh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 132 LDDQIALLKHKLYLIQQGLA-------FN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~-------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
+++|+..|++++++.+.... +. .+..+.+....+. .+..+|+++.+++++|.++...|++++|+..|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~-AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA-ALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555554432111 00 0122222221111 123399999999999999999999999999999999
Q ss_pred hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 009850 204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 282 (524)
Q Consensus 204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~e 282 (524)
+++|+++. ++++|.++..+|++++|+.+|+ +++...|+.+......|.+.....++..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~---------------------~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYAR---------------------LVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 99999999 9999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCC
Q 009850 283 AFLGSSSIWQPQPCKD 298 (524)
Q Consensus 283 Ai~~~~~al~~~P~~~ 298 (524)
|...|+++|..+|...
T Consensus 730 a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 730 LHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHhhcCccch
Confidence 9999999999999866
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=2.7e-18 Score=195.65 Aligned_cols=267 Identities=16% Similarity=0.094 Sum_probs=222.5
Q ss_pred hhhhhhHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 30 RTRSDSFHA-IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 30 ~~~~~~~~~-~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
..+...+.. +...|.....|..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444443 3456778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------h-hcccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850 109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------F-NGKRTKTARSQGKKFQVSVEQEATRLL 179 (524)
Q Consensus 109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~-~~~~~~~a~~~~~~~~~~~~p~~~~a~ 179 (524)
.+|++. ..+..++.++...|++++|+..++.+....+.... + ..+..+.+....+.. ....|++ ..+
T Consensus 664 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~ 739 (899)
T TIGR02917 664 LKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA-LKRAPSS-QNA 739 (899)
T ss_pred cCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCc-hHH
Confidence 999986 67788899999999999999999988776532221 1 123333333332221 2235665 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cC
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RG 245 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~ 245 (524)
..++.++...|++++|+..+++++...|++.. ++.+|.++..+|++++|+..|+++....|... ++
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 88999999999999999999999999999988 89999999999999999999999987777654 44
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 246 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.+|+..+++++...|+++..+..+|.++...|++++|+..|+++++.+|.+..+.
T Consensus 820 -~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 820 -PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 6789999999999999999999999999999999999999999999999876655
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=2e-18 Score=202.36 Aligned_cols=224 Identities=15% Similarity=0.075 Sum_probs=200.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------HHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ------------ESL 118 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~------------~~l 118 (524)
.+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++.. +..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 55889999999999999999999999999999999999999999999999999999999997531 122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
...+|.++...|++++|+..|++++++ +|++..++..+|.++...|++++|+.+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~--------------------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV--------------------------DNTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345578889999999999999999999 899999999999999999999999999
Q ss_pred HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC----------------------CCcCHHHHHHHHHH
Q 009850 199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD----------------------GPRGVDSHLKAYER 255 (524)
Q Consensus 199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~----------------------~~~~~~~A~~~~~~ 255 (524)
|+++++++|++.. +..++.++. .+++++|+.+++++.+..+. ..+++++|+..|++
T Consensus 408 y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 408 YQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988 889999885 46789999988765332111 23788999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++..|+++.+++.+|.+|...|++++|+..|+++++.+|.+....
T Consensus 487 Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 487 RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999999999999999999887644
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=3.7e-18 Score=194.52 Aligned_cols=269 Identities=12% Similarity=0.062 Sum_probs=213.3
Q ss_pred hhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 30 RTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 30 ~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
..+...+. ++...|....++..++.++...|++++|+..|.+++..+|.+...+..++.++...|++++|+..+++++.
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444 33556777788888888888899999999999998888888888888888888889999999999988888
Q ss_pred hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hh-cccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850 109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FN-GKRTKTARSQGKKFQVSVEQEATRLL 179 (524)
Q Consensus 109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~ 179 (524)
..|.+. ..+..+|.+|...|++++|+..|+++++..+.... +. .+..+.+....+.. ...+|++..++
T Consensus 596 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~ 672 (899)
T TIGR02917 596 AAPDSP--EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA-LELKPDNTEAQ 672 (899)
T ss_pred cCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCCHHHH
Confidence 888776 67788888888889999999988888877543221 11 12333333322221 34478888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------cCH
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------RGV 246 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------~~~ 246 (524)
..++.++...|++++|+..++.+....|.+.. +..+|.++...|++++|+..|+++....+... ++.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 89999999999999999999988888888887 88889999999999999999998876665542 677
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 247 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
++|.+.+++.+...|++..+++.+|.++...|++++|+..|+++++..|.+....
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888899999999999999999999999999999999999999998888776655
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=1.5e-18 Score=173.52 Aligned_cols=206 Identities=11% Similarity=-0.066 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|+.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++. .++..+|.+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence 456888888888888888888888888888888888888888888888888888888888888888886 566778888
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
+...|++++|+..|++++++ +|+++.... ...+....+++++|+..|.+++..
T Consensus 142 l~~~g~~~eA~~~~~~al~~--------------------------~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--------------------------DPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------------------------CCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888888888888888888 787763211 122344567888888888776654
Q ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850 206 APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 285 (524)
Q Consensus 206 ~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~ 285 (524)
.+.. .|. .+.++..+|++.++ ..++.+ .+.++...++.|...++|+++|.++..+|++++|+.
T Consensus 195 ~~~~-~~~-~~~~~~~lg~~~~~-~~~~~~--------------~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 195 LDKE-QWG-WNIVEFYLGKISEE-TLMERL--------------KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred CCcc-ccH-HHHHHHHccCCCHH-HHHHHH--------------HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3221 132 45666667776554 233322 122234556677888999999999999999999999
Q ss_pred HHhhcccCCCCC
Q 009850 286 GSSSIWQPQPCK 297 (524)
Q Consensus 286 ~~~~al~~~P~~ 297 (524)
+|++++..+|.+
T Consensus 258 ~~~~Al~~~~~~ 269 (296)
T PRK11189 258 LFKLALANNVYN 269 (296)
T ss_pred HHHHHHHhCCch
Confidence 999999999743
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=6.7e-18 Score=175.54 Aligned_cols=253 Identities=16% Similarity=0.092 Sum_probs=198.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--QESLDNIL 122 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~l~~~l 122 (524)
.....+.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+... ....+..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4445777899999999999999999999999999999999999999999999999999999888543221 13567788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHh---------hhcccHHHHHHHhHHHHHhcCCCc-----HHHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLA---------FNGKRTKTARSQGKKFQVSVEQEA-----TRLLGNLGWALMQ 188 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~p~~-----~~a~~~Lg~~~~~ 188 (524)
|.+|...|++++|+..|+++++..+.... ...+..+.+....... ....|.+ ...+..+|.++..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875422211 1113333333332222 1223433 3356788999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------CcCHHHHHHHH
Q 009850 189 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------PRGVDSHLKAY 253 (524)
Q Consensus 189 ~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------~~~~~~A~~~~ 253 (524)
.|++++|+.+|+++++.+|++.. +..+|.++...|++++|+..|+++....+.. .++.++|+..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999998887 8889999999999999999999987655442 16788899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 254 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 254 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
++++...|+.... ..+|.++...|++++|+..++.+++..|.+..
T Consensus 273 ~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 273 RRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 9999999987544 88899999999999999999999998887654
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.3e-19 Score=187.57 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----------------------------------CCCcHHHHHHHHHHHHHc
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINA----------------------------------GDRVDSALKDMAIVMKQQ 93 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~----------------------------------~p~~~~a~~~La~~~~~~ 93 (524)
...++|..|++.++|++|..+|+.+-++ +|+.+++|..+|.||-.+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 3468999999999999999999887664 466777888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC
Q 009850 94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p 173 (524)
++++.|+++|+++++++|... .++..+|.-+.....+|.|..+|+.++.. +|
T Consensus 435 kdh~~Aik~f~RAiQldp~fa--YayTLlGhE~~~~ee~d~a~~~fr~Al~~--------------------------~~ 486 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFA--YAYTLLGHESIATEEFDKAMKSFRKALGV--------------------------DP 486 (638)
T ss_pred hHHHHHHHHHHHhhccCCccc--hhhhhcCChhhhhHHHHhHHHHHHhhhcC--------------------------Cc
Confidence 888888888888888888776 45667777777888888888888888888 89
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHH
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKA 252 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~ 252 (524)
.+-.+|+.+|.+|.++++++.|+-+|++|++++|.+.. .+.+|..+.++|+.++|+..|+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~------------------- 547 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE------------------- 547 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH-------------------
Confidence 99999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccc
Q 009850 253 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKT 309 (524)
Q Consensus 253 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~ 309 (524)
+|+.++|.++-..+..|.++...+++.+|+..++..-..-|....++..++.+|-
T Consensus 548 --~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 548 --KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred --HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999988876644344443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=7e-18 Score=175.41 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc----------
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG---------- 149 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~---------- 149 (524)
....+.+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+++++......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV--ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34567778999999999999999999999999886 678899999999999999999999988642111
Q ss_pred --Hhhh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----H-HHHHHHHHH
Q 009850 150 --LAFN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-----K-MCNLGICLM 220 (524)
Q Consensus 150 --~~~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-----~-~~~Lg~~~~ 220 (524)
..+. .+..+.+....... ...+|.+..++..++.++...|++++|+..|++++...|.+. . ++.+|.++.
T Consensus 113 La~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQL-VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 1111 12222232222221 122455566666777777777777777777777666665531 1 445666666
Q ss_pred HcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 009850 221 KQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDL-ESEMMNKGGDRVEQSRLFDAFLG 286 (524)
Q Consensus 221 ~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eAi~~ 286 (524)
..|++++|+..|+++....+... ++.++|++.++++....|.. ..++..++.+|...|++++|+..
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776655444432 55666666666666666654 23455666666666777777766
Q ss_pred HhhcccCCCCC
Q 009850 287 SSSIWQPQPCK 297 (524)
Q Consensus 287 ~~~al~~~P~~ 297 (524)
++++++..|..
T Consensus 272 l~~~~~~~p~~ 282 (389)
T PRK11788 272 LRRALEEYPGA 282 (389)
T ss_pred HHHHHHhCCCc
Confidence 66666666644
No 19
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=176.08 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=195.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~ 129 (524)
|..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++. .+...|+..|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--eaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL--EALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH--HHHHHHHHHHhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999997 7788999999999
Q ss_pred CChHHHHHHHHHHHHHhhccHhhhc----c---------cHHHHHHHhHHHH--HhcCC--CcHHHHHHHHHHHHHcCCH
Q 009850 130 GRLDDQIALLKHKLYLIQQGLAFNG----K---------RTKTARSQGKKFQ--VSVEQ--EATRLLGNLGWALMQQNNY 192 (524)
Q Consensus 130 g~~~eA~~~~~~al~l~~~~~~~~~----~---------~~~~a~~~~~~~~--~~~~p--~~~~a~~~Lg~~~~~~g~~ 192 (524)
|.-.+|+.++.+.+...+.-..+.. . .........+.+. ....| .+++++..||.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999999999999876521111000 0 0011111111111 22245 6789999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850 193 IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG 271 (524)
Q Consensus 193 ~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (524)
+.|+++|+.||..+|++.. |..||..+..-.+.++|+..|+ +|+++.|.+..+++|||
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~---------------------rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYN---------------------RALQLQPGYVRVRYNLG 505 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHH---------------------HHHhcCCCeeeeehhhh
Confidence 9999999999999999999 9999999999999999999999 89999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 272 GDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 272 ~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
.+++.+|.|.+|+.+|-.++.+.+....
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999998877443
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=6.9e-18 Score=183.15 Aligned_cols=204 Identities=12% Similarity=-0.029 Sum_probs=178.3
Q ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHH
Q 009850 49 YVRAKNVQLVD---KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ---------NRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 49 ~~~lg~~~~~~---g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~---------g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
++..|...+.. +++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-- 338 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-- 338 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--
Confidence 34556544443 4578999999999999999999999999988744 348999999999999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.++..+|.++...|++++|+..|++++++ +|+++.+++.+|.++...|++++|+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------------------------~P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLL--------------------------SPISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 67788999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q 009850 197 DAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM-LKDLESEMMNKGGDR 274 (524)
Q Consensus 197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~ 274 (524)
..|+++++++|.++. ++.++.++...|++++|+..++ +++.. .|+.+.++..+|.++
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~---------------------~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD---------------------ELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH---------------------HHHHhccccCHHHHHHHHHHH
Confidence 999999999999987 5667777888999999999998 55655 478888999999999
Q ss_pred HHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 275 VEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 275 ~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
..+|++++|+..+.++....|......
T Consensus 452 ~~~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred HhCCCHHHHHHHHHHhhhccchhHHHH
Confidence 999999999999999877777655433
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=2.5e-17 Score=151.03 Aligned_cols=207 Identities=16% Similarity=0.078 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
..+...||.-|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|.+.|++++.++|+++ .+.++.|..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHH
Confidence 346889999999999999999999999999999999999999999999999999999999999999998 888999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
++.+|++++|...|++++..- .-+..+.++-|+|.|.++.|+++.|..+|++++++
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 999999999999999998751 02445789999999999999999999999999999
Q ss_pred CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850 206 APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 284 (524)
Q Consensus 206 ~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi 284 (524)
+|+.+. ...++..+++.|++..|..++++. ....+-.++.+.....+-...|+-+.+-
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~---------------------~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERY---------------------QQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHH---------------------HhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 999998 999999999999999999999953 3333334444444445666677777666
Q ss_pred HHHhhcccCCCCCCC
Q 009850 285 LGSSSIWQPQPCKDH 299 (524)
Q Consensus 285 ~~~~~al~~~P~~~~ 299 (524)
..-.+.-+.-|....
T Consensus 228 ~Y~~qL~r~fP~s~e 242 (250)
T COG3063 228 RYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHhCCCcHH
Confidence 665555555565544
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.1e-18 Score=168.94 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
..++...|..++..|++-.|...|+++|.++|.+...|..+|.+|...++.++-...|.++..++|.++ .+++..|++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP--DVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--chhHhHHHH
Confidence 567788899999999999999999999999999999999999999999999999999999999999998 788999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
++-++++++|+.-|++++.+ +|++.-++..++.+++++++++++...|+.+...
T Consensus 404 ~flL~q~e~A~aDF~Kai~L--------------------------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISL--------------------------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhc--------------------------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------------------cCHHHHHHHHHHHHHhCCCCH
Q 009850 206 APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------------------RGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 206 ~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------------------~~~~~A~~~~~~al~~~p~~~ 264 (524)
.|..+. +...|.++..+++|+.|++.|..+....+... +++..|++.+.++++++|...
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence 999999 88899999999999999999999976666521 677889999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 265 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 265 ~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.++..||.+..++|+.++|++.|+++..+.-...+++
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999887755544433
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=3.6e-17 Score=177.59 Aligned_cols=204 Identities=12% Similarity=-0.001 Sum_probs=177.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVD---------KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR 107 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~---------g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al 107 (524)
+++...|....+|..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+..|++++
T Consensus 286 ~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 286 QCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35566788889999999887643 448999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 108 ~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
+++|+++ .+++.+|.++...|++++|+..+++++++ +|.++.+++.++.+++
T Consensus 366 ~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------------------------~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 366 LLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKL--------------------------DPTRAAAGITKLWITY 417 (553)
T ss_pred HhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------------CCCChhhHHHHHHHHH
Confidence 9999998 67788999999999999999999999999 8999888778888888
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850 188 QQNNYIEAEDAYRRALSIA-PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 265 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l~-P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 265 (524)
..|++++|+..+++++... |+++. +.++|.++..+|++++|...+. +.....|+...
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~---------------------~~~~~~~~~~~ 476 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK---------------------EISTQEITGLI 476 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH---------------------HhhhccchhHH
Confidence 8999999999999999885 77777 8999999999999999999998 45555666667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 266 EMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 266 a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
++..++..|...|+ +|...++.++
T Consensus 477 ~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHHHHHhccHH--HHHHHHHHHH
Confidence 77888888888874 5655555544
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=1.1e-17 Score=153.31 Aligned_cols=200 Identities=19% Similarity=0.192 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
..+...||.-|+..|++..|...++++++++|++. ..|..++.+|...|+.+.|.+.|++++.+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-------------- 98 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSL-------------- 98 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhc--------------
Confidence 35688999999999999999999999999999997 78889999999999999999999999999
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+|++.++++|.|+.++.+|+|++|...|++|+. +|.... |-|+|.|..+.|+++.|..+|+
T Consensus 99 ------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~-- 163 (250)
T COG3063 99 ------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLK-- 163 (250)
T ss_pred ------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHH--
Confidence 999999999999999999999999999999998 777644 9999999999999999999999
Q ss_pred cccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccc
Q 009850 236 KPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFAD 315 (524)
Q Consensus 236 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd 315 (524)
++++.+|+.+.....++..++..|++..|...++......+.....+- -.+.....+||
T Consensus 164 -------------------raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~--L~iriak~~gd 222 (250)
T COG3063 164 -------------------RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL--LGIRIAKRLGD 222 (250)
T ss_pred -------------------HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH--HHHHHHHHhcc
Confidence 889999999999999999999999999999999988877775555441 13445567788
Q ss_pred cccccccccchhhhhhhc
Q 009850 316 ENIDSNVDVNPIVLSKHR 333 (524)
Q Consensus 316 ~~~~~~~~~l~~l~~~~~ 333 (524)
.... .+|-..|...+|
T Consensus 223 ~~~a--~~Y~~qL~r~fP 238 (250)
T COG3063 223 RAAA--QRYQAQLQRLFP 238 (250)
T ss_pred HHHH--HHHHHHHHHhCC
Confidence 7766 666666644443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=5.6e-16 Score=174.38 Aligned_cols=307 Identities=9% Similarity=-0.023 Sum_probs=200.7
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
...|..+.++..+|.++...|++++|+..+++++...|++.. +..+|.++...|++++|+..++++++..|++. .++
T Consensus 77 ~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~--~~~ 153 (765)
T PRK10049 77 SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ--QYP 153 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHH
Confidence 344667777777777777777777777777777777777777 77777777777777777777777777777775 444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH----------------------------------------------HHhh---c--
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKL----------------------------------------------YLIQ---Q-- 148 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al----------------------------------------------~l~~---~-- 148 (524)
..++.++...|..++|+..++++. +..+ .
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 556666666666665554444211 1100 0
Q ss_pred -----------cHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HH-
Q 009850 149 -----------GLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN----NK- 211 (524)
Q Consensus 149 -----------~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~----~~- 211 (524)
+..+..+....+....+.+ ....|. ...+...+|.+|...|++++|+.+|++++..+|.+ ..
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l-l~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRL-KAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 0000011112222111111 111221 22234446889999999999999999999888766 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccC-------------C---------------CcCHHHHHHHHHHHHHhCCCC
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------G---------------PRGVDSHLKAYERAQQMLKDL 263 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~-------------~---------------~~~~~~A~~~~~~al~~~p~~ 263 (524)
+..++.++.+.|++++|+..++++....|. . .++.++|+..+++++...|++
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 677888889999999999999988655431 1 167788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccccccccchhhhhhhccccccccchh
Q 009850 264 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTAN 343 (524)
Q Consensus 264 ~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~~~~~~l~~l~~~~~~~~~~~p~~~ 343 (524)
..++..+|.++...|++++|+..+++++..+|.+...... ......+.|+.... ...+. .+...+|-.-
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A--~~~~~-------~ll~~~Pd~~ 461 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQM--DVLTD-------DVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHH--HHHHH-------HHHHhCCCCH
Confidence 9999999999999999999999999999999998875422 33344455554333 22222 2233344444
Q ss_pred HHHhhhhhhhhhcccchh
Q 009850 344 AIKTQENFADENINANIV 361 (524)
Q Consensus 344 ~i~~~~~~~~~~~~~~l~ 361 (524)
.+.+.....+.+..+.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~ 479 (765)
T PRK10049 462 GVQRLARARDVHHMAELR 479 (765)
T ss_pred HHHHHHHHHHhccCceEE
Confidence 455555555555544443
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.75 E-value=3.2e-16 Score=150.58 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=189.8
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL 123 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg 123 (524)
...+-++.+|..++..|++..|+..|..|++.+|++..+++..|.+|..+|+-.-|+..+.+++++.|+.. .+....|
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--AARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--HHHHHhc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999986 5667779
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhc------------------------ccHHHHHHHhHHH------------
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNG------------------------KRTKTARSQGKKF------------ 167 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~------------------------~~~~~a~~~~~~~------------ 167 (524)
.++.++|.+++|+.-|+.++...+....... +....+..+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 9999999999999999999876532111000 0001111111000
Q ss_pred ---------------------HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----H---------H
Q 009850 168 ---------------------QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----M---------C 213 (524)
Q Consensus 168 ---------------------~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~---------~ 213 (524)
...+..++.+.++.++.+++..|+.+.++...+++|+++|++.. | .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 02224455556666666666666666666666666666666522 1 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009850 214 NLGICLMKQGRIGEAKETLRRVKPAVADGP-----------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE 276 (524)
Q Consensus 214 ~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 276 (524)
.-+....+.++|.++++..++++...|... +.+.+|+....+++.++|+++.++..++..|+.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 112233455666666666666655555522 567889999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 277 QSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 277 ~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...|++||..|+++...++.+...-
T Consensus 354 dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999987744
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.7e-16 Score=156.52 Aligned_cols=203 Identities=16% Similarity=0.083 Sum_probs=174.9
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH---HH-------------------------------HHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA---LK-------------------------------DMA 87 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a---~~-------------------------------~La 87 (524)
+|...-.-...|.+.+...|+++|+..|+.+.+.+|-..+- +. -+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 34444444567888999999999999999999988853221 11 135
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850 88 IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF 167 (524)
Q Consensus 88 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~ 167 (524)
+-|...+++++|+.+|+++++++|... .+|..+|.-|..+.+...|++.|++|+.+
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~--~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------------------- 393 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYL--SAWTLMGHEYVEMKNTHAAIESYRRAVDI---------------------- 393 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchh--HHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------------
Confidence 566667788999999999999999887 78889999999999999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCH
Q 009850 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 246 (524)
Q Consensus 168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~ 246 (524)
+|.+-.+|+.||++|..++...=|+-+|++|+.+.|+++. |..||.||.++++.++|+.+|.
T Consensus 394 ----~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------------- 456 (559)
T KOG1155|consen 394 ----NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------------- 456 (559)
T ss_pred ----CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH-------------
Confidence 8999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 247 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
+++........+++.+|.+|.+++++.+|..+|++-++.
T Consensus 457 --------rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 457 --------RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred --------HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666666667789999999999999999999999988764
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-16 Score=162.25 Aligned_cols=212 Identities=17% Similarity=0.094 Sum_probs=192.1
Q ss_pred HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 39 IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 39 ~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
+...|..+-+|+..|..|+..|++.+|..+|.++..++|....+|...|..|...|..++|+.+|..|-++.|......
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~- 383 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS- 383 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-
Confidence 3456888889999999999999999999999999999999999999999999999999999999999999999764223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
..+|.-|.+.+++.-|..+|.+|+.+ .|.++-++..+|.+.+..+.|.+|..+
T Consensus 384 -LYlgmey~~t~n~kLAe~Ff~~A~ai--------------------------~P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 384 -LYLGMEYMRTNNLKLAEKFFKQALAI--------------------------APSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHHhc--------------------------CCCcchhhhhhhheeehHhhhHHHHHH
Confidence 34577788999999999999999988 899999999999999999999999999
Q ss_pred HHHHHhhC----CCc----HHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 199 YRRALSIA----PDN----NKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 199 ~~~Al~l~----P~~----~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
|+.++..- ++. +.+.|||.++.+++++++|+.+|+ +++.+.|.++..|..+
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q---------------------~aL~l~~k~~~~~asi 495 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ---------------------KALLLSPKDASTHASI 495 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH---------------------HHHHcCCCchhHHHHH
Confidence 99999432 222 228899999999999999999999 8899999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 271 GGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 271 g~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|.+|..+|+++.|+..|.+++-+.|.+..
T Consensus 496 g~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 496 GYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999999999999999999998754
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2e-16 Score=158.16 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.+-..|+-+++.|.|++||.+|.+||.+.|+.+..|.+++.||...|+|++-++...++++++|+.. .+++..+..+.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~--KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV--KALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH--HHHHHHHHHHH
Confidence 4667899999999999999999999999999999999999999999999999999999999999997 67788899999
Q ss_pred HcCChHHHHHHHHHH------------------HHHh------------------------------------------h
Q 009850 128 RCGRLDDQIALLKHK------------------LYLI------------------------------------------Q 147 (524)
Q Consensus 128 ~~g~~~eA~~~~~~a------------------l~l~------------------------------------------~ 147 (524)
.+|++++|+.-..-. |... +
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999999987543321 1110 0
Q ss_pred ccHh--------hhcc---cHHHH----------------------------HHHhH------------------HHHHh
Q 009850 148 QGLA--------FNGK---RTKTA----------------------------RSQGK------------------KFQVS 170 (524)
Q Consensus 148 ~~~~--------~~~~---~~~~a----------------------------~~~~~------------------~~~~~ 170 (524)
.+-. +... .+..+ ..+.- ...+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0000 0000 00000 00000 00144
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------
Q 009850 171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------ 243 (524)
Q Consensus 171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------ 243 (524)
++|.+...|..+|.+|....+-++-...|.+|..++|++++ |+.+|.+++-++++++|+..|+++....|...
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 57777777999999999999999999999999999999999 99999999999999999999999988877764
Q ss_pred -------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 244 -------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 244 -------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+.++++.+.|+.+....|..++++...|.++..+++++.|+..|..++.+.|....++
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 5677889999999999999999999999999999999999999999999999855543
No 30
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.7e-16 Score=151.49 Aligned_cols=225 Identities=13% Similarity=0.094 Sum_probs=200.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~ 129 (524)
..+|.+|++.|-+.+|...++.++...|. ++.+..|+.+|.+..+...|+..|.+.+...|.+. .+..-.+.++..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--T~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--TYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--hhhhhhHHHHHHH
Confidence 47999999999999999999999998875 78899999999999999999999999999999886 5666778999999
Q ss_pred CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
+++++|.++|+.+++. +|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+
T Consensus 304 ~~~~~a~~lYk~vlk~--------------------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s 357 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--------------------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS 357 (478)
T ss_pred HhHHHHHHHHHHHHhc--------------------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence 9999999999999998 78888888888888888899999999999999988888
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC------CC----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 210 NK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD------GP----------RGVDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 210 ~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~------~~----------~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
+. ++|+|.|++..++++-++..|++++..... .| |++..|.++|+-++..++++.+++.|||.
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 88 888999999999999999999888543321 12 77788888999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhhcccCCCCCCCcccc
Q 009850 273 DRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 303 (524)
Q Consensus 273 ~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~ 303 (524)
+-.+.|+.++|...+..+-...|...+...+
T Consensus 438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 9999999999999999999999987775533
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.5e-16 Score=158.25 Aligned_cols=210 Identities=15% Similarity=0.065 Sum_probs=186.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
-++++-..|+.|...++.++|+.+|++|++++|....+|..+|+-|..+.+...|++.|++|++++|.+- .+|+-+|+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhH
Confidence 4445777889999999999999999999999999999999999999999999999999999999999885 89999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
.|.-++...=|+-+|++|+++ .|+++..|..||.||.+.++.++|+.+|.+|+.
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999999999 899999999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 283 (524)
....+.. +..||..|.++++..+|..+|++... .....-...|....+..-|+.-+...+++++|
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~--------------~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE--------------VSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 9888777 99999999999999999999996432 11122224455566777799999999999999
Q ss_pred HHHHhhcccCCCC
Q 009850 284 FLGSSSIWQPQPC 296 (524)
Q Consensus 284 i~~~~~al~~~P~ 296 (524)
-.....++..++.
T Consensus 527 s~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 527 SYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHhcCCch
Confidence 9988877776544
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1e-16 Score=153.21 Aligned_cols=320 Identities=14% Similarity=0.125 Sum_probs=253.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ---AQESLDNILLDLY 126 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~---~~~~l~~~lg~~~ 126 (524)
|-.|.-++...+.++|+..|..+++.+|...++...||.+|.+.|..+.||...+..+.. |+. -...+...||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 456888899999999999999999999999999999999999999999999999887665 443 2245667899999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
+..|-+|.|+..|...+.. |+. ..++..|-.+|....+|++|++.-++..++
T Consensus 118 m~aGl~DRAE~~f~~L~de---------------------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDE---------------------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHhhhhhHHHHHHHHHhcc---------------------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 9999999999999987754 333 568899999999999999999999999999
Q ss_pred CCCcH-----H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850 206 APDNN-----K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR 279 (524)
Q Consensus 206 ~P~~~-----~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 279 (524)
.++.. . ||.|+..+....+.+.|+..+. ++++.+|....+-..+|.++...|+
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~---------------------kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLK---------------------KALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH---------------------HHHhhCccceehhhhhhHHHHhccc
Confidence 88762 2 7888888888888888888887 8899999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCC-cccccccccccccccccccccccccchhhhhhhccccccccchhHHHhh--hhhhhhhc
Q 009850 280 LFDAFLGSSSIWQPQPCKDH-ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQ--ENFADENI 356 (524)
Q Consensus 280 ~~eAi~~~~~al~~~P~~~~-~l~~~~l~~~~q~lgd~~~~~~~~~l~~l~~~~~~~~~~~p~~~~i~~~--~~~~~~~~ 356 (524)
+..|++.++.+++.+|.... ++. .+..|...+|+...+ ..|+...-+..++........+.|... ...+..+.
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~--~L~~~Y~~lg~~~~~--~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLE--MLYECYAQLGKPAEG--LNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHH--HHHHHHHHhCCHHHH--HHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHH
Confidence 99999999999999998766 332 366778888888777 677777767777777777777777755 67778888
Q ss_pred ccchhchhhhhhhhhhhcccCC-CCCCCCCCCCCcc-cccccCCCCcCCccccchhhhhhhccccccccCccCCCCC
Q 009850 357 NANIVVNQTVLAQQRGVQQLAP-FGNSWNIDAPPFY-SSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVG 431 (524)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 431 (524)
..++..+|++....++...-.. ........ .++ ..++.-+.+..+|+ .+|+.-|..+..+--||-+
T Consensus 306 ~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~--sL~~lr~mvge~l~~~~~-------YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 306 TRQLRRKPTMRGFHRLMDYHLADAEEGRAKE--SLDLLRDMVGEQLRRKPR-------YRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred HHHHhhCCcHHHHHHHHHhhhccccccchhh--hHHHHHHHHHHHHhhcCC-------ceecccCCcceeeeeeCCC
Confidence 9999999999999998764111 11111111 122 12333333222222 6688888888877766654
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=1.8e-15 Score=151.36 Aligned_cols=165 Identities=14% Similarity=0.062 Sum_probs=132.2
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
+++...|..+.+|+.+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++..
T Consensus 89 ~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 168 (296)
T PRK11189 89 QALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR 168 (296)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 35566788999999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.++. .++...+++++|+..|.+++... +|+ .|. .+.++...|++.++
T Consensus 169 ~~~~---~l~~~~~~~~~A~~~l~~~~~~~-------------------------~~~---~~~-~~~~~~~lg~~~~~- 215 (296)
T PRK11189 169 ALWL---YLAESKLDPKQAKENLKQRYEKL-------------------------DKE---QWG-WNIVEFYLGKISEE- 215 (296)
T ss_pred HHHH---HHHHccCCHHHHHHHHHHHHhhC-------------------------Ccc---ccH-HHHHHHHccCCCHH-
Confidence 2222 23456789999999998766440 222 222 45666667776443
Q ss_pred HHHHHH-------HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 197 DAYRRA-------LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 197 ~~~~~A-------l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
..+..+ .++.|.... |+++|.++..+|++++|+.+|++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233333 355666667 99999999999999999999993
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=3e-17 Score=163.17 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
.+.+|.+++..|++++|+..+.+.+.. .|+++..|..+|.+...++++++|+..|++++..++.++ ..+..++.+
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~--~~~~~l~~l- 87 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP--QDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccc-
Confidence 346688888888888888888665543 477888888888888888888888888888888777654 344455555
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHh--------hhcccHHHHHHHhHHHH-HhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLA--------FNGKRTKTARSQGKKFQ-VSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~--------~~~~~~~~a~~~~~~~~-~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
...+++++|+.+++++.+....... ...+..+.+........ ....+.++.+|..+|.++.+.|++++|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5778888888887776654321111 11123333333333222 11136778999999999999999999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCC
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDL 263 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~ 263 (524)
+|+++++++|+++. +..++.++...|+++++...+.......+.++ ++.+.|+..|++++...|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999 88999999999999997777776644443332 78889999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 264 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 264 ~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
+..+..+|.++...|+.++|...++++|+.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999888753
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=5e-15 Score=166.75 Aligned_cols=286 Identities=13% Similarity=0.054 Sum_probs=215.1
Q ss_pred hhhhhhhHHHHhc-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 29 SRTRSDSFHAIHK-VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR 107 (524)
Q Consensus 29 l~~~~~~~~~~~~-~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al 107 (524)
...+...+..... .|....++..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444554443 567777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc---------ccHH--------------------
Q 009850 108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG---------KRTK-------------------- 158 (524)
Q Consensus 108 ~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~---------~~~~-------------------- 158 (524)
+.+|+++ . +..+|.++...|++++|+..|++++++.+....... ...+
T Consensus 111 ~~~P~~~--~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 111 SGAPDKA--N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred HhCCCCH--H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 9999998 5 788999999999999999999999998744322100 1111
Q ss_pred --------------------------HHHHHhHHHHH--hcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 159 --------------------------TARSQGKKFQV--SVEQEA----TRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 159 --------------------------~a~~~~~~~~~--~~~p~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
.+....+.+.. ..+|+. ..++.....++...|++++|+..|+++++..
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 00101111110 123332 2233332334467899999999999999987
Q ss_pred CCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-----------------CcCHHHHHHHHHHHHHhCCC-----
Q 009850 207 PDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADG-----------------PRGVDSHLKAYERAQQMLKD----- 262 (524)
Q Consensus 207 P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-----------------~~~~~~A~~~~~~al~~~p~----- 262 (524)
|..+. ...+|.+|..+|++++|+..|+++....+.. .+.+++|+..++++....|.
T Consensus 268 ~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~ 347 (765)
T PRK10049 268 QIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY 347 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec
Confidence 54443 3446999999999999999999986655433 16778899999999988773
Q ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccc
Q 009850 263 ----------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENID 319 (524)
Q Consensus 263 ----------~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~ 319 (524)
...++..+|.++...|++++|+..+++++...|.+...... +.......|+....
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~--lA~l~~~~g~~~~A 412 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID--YASVLQARGWPRAA 412 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHH
Confidence 24577889999999999999999999999999999875533 33343444554433
No 36
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=4e-16 Score=160.90 Aligned_cols=339 Identities=13% Similarity=0.090 Sum_probs=241.7
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
+|....++|..+.-.++.++|...+...+.+++..|++++.+-..|..+..+|+-++|..+.+.++..++.+. .+|..
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--vCwHv 80 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--VCWHV 80 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--hhHHH
Confidence 4555667899999999999999999999999999999999999999999999999999999999999999886 78999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
+|.++....+|++|+.+|+.|+.+ +|++..+|..++.+..++|+|+.......+
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~--------------------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKI--------------------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------------cCHHHHHHHHHHHHHh
Q 009850 202 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------------RGVDSHLKAYERAQQM 259 (524)
Q Consensus 202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------------~~~~~A~~~~~~al~~ 259 (524)
.+++.|.... |...+.++...|++..|....+.........+ +..+.+++.+..--..
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 9999999988 99999999999999999998887644332111 2233333333332222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccccccccchhhhhhhccccccc
Q 009850 260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLF 339 (524)
Q Consensus 260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~~~~~~l~~l~~~~~~~~~~~ 339 (524)
.-+........|..+..++++++|+..|...+..+|++...... +..+.-.+-|.... +..-.......+
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~--l~~~lgk~~d~~~~--------lk~ly~~ls~~y 284 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG--LEKALGKIKDMLEA--------LKALYAILSEKY 284 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH--HHHHHHHHhhhHHH--------HHHHHHHHhhcC
Confidence 22333455667899999999999999999999999998875411 11110001111111 111222233334
Q ss_pred cchhHHHhhhhhhhhhcccchhchhhhhhhhhhhcccCCCCCCCCCCCCCcccccccCCCCcCCccccchhhhhhhcccc
Q 009850 340 PTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSG 419 (524)
Q Consensus 340 p~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 419 (524)
|+...+.+...-.....+....+...+ .+ .+.-++++++.+..|+|-+..... .++. ..-.++.++..++.+
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL---~~---~l~Kg~p~vf~dl~SLyk~p~k~~-~le~-Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYL---RP---LLSKGVPSVFKDLRSLYKDPEKVA-FLEK-LVTSYQHSLSGTGMF 356 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHH---HH---HhhcCCCchhhhhHHHHhchhHhH-HHHH-HHHHHHhhcccccCC
Confidence 544444444222211111111111111 11 112288999999999995532111 1111 233356667777777
Q ss_pred ccccCcc
Q 009850 420 NATNSMR 426 (524)
Q Consensus 420 ~~~~~~~ 426 (524)
+..++=+
T Consensus 357 ~~~D~~~ 363 (700)
T KOG1156|consen 357 NFLDDGK 363 (700)
T ss_pred Ccccccc
Confidence 7766443
No 37
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=4.6e-15 Score=148.77 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
++-.+-.++...+++++|+..+.++|.++|++..+|..++.++..+| ++++++..+.+++..+|++. .+|+..+.++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny--qaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY--QIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch--HHhHHHHHHH
Confidence 34334445677889999999999999999999999999999999999 68999999999999999997 6788888888
Q ss_pred HHcCCh--HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 127 KRCGRL--DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 127 ~~~g~~--~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
...|+. ++++.++.++++. +|++..+|..+|+++...|+|++|++++.++++
T Consensus 117 ~~l~~~~~~~el~~~~kal~~--------------------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSL--------------------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHh--------------------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888874 7789999999988 999999999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSR 279 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~ 279 (524)
.+|.+.. |+.++.++...|+... ++ ...++.+....+++...|++..+|..++.++.. +++
T Consensus 171 ~d~~N~sAW~~R~~vl~~~~~l~~----~~----------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 171 EDVRNNSAWNQRYFVITRSPLLGG----LE----------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HCCCchhHHHHHHHHHHhcccccc----cc----------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999999 9999999887643110 00 012334555569999999999999999999988 456
Q ss_pred HHHHHHHHhhcccCCCCCCCcccccccccc
Q 009850 280 LFDAFLGSSSIWQPQPCKDHILPTTNAIKT 309 (524)
Q Consensus 280 ~~eAi~~~~~al~~~P~~~~~l~~~~l~~~ 309 (524)
..+|+..+..+++.+|.+...+..+.-+++
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 688999999988888877765544344554
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=9.9e-15 Score=138.77 Aligned_cols=172 Identities=14% Similarity=0.055 Sum_probs=155.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
++...|.....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...+......
T Consensus 57 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 34556788889999999999999999999999999999999999999999999999999999999999998643222235
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
.+..+|.++...|++++|...|.+++.. +|++..++..+|.++...|++++|+.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQI--------------------------DPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6778899999999999999999999988 88889999999999999999999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
++++++...|.++. +..++.++...|+.++|..+.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999888877 778999999999999999988754
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=153.27 Aligned_cols=185 Identities=21% Similarity=0.252 Sum_probs=165.9
Q ss_pred hhhhhhhHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 29 SRTRSDSFHA-IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR 107 (524)
Q Consensus 29 l~~~~~~~~~-~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al 107 (524)
+..+...|++ +...|...++|..||.+....++-..||..++++++++|++-+++..||..|...|.-.+|+.++.+.+
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 5556666664 467899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhCCCcH-----------------------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 108 SRCSDQA-----------------------------------------QESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 108 ~~~p~~~-----------------------------------------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
...|... ...+...||.+|...|+|++|+.+|+.||..
T Consensus 381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v- 459 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV- 459 (579)
T ss_pred HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-
Confidence 7654211 1245668999999999999999999999998
Q ss_pred hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH
Q 009850 147 QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI 225 (524)
Q Consensus 147 ~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~ 225 (524)
+|++...|+.||..+....+.++|+..|++|+++.|.... ++|||.+++.+|-|
T Consensus 460 -------------------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 460 -------------------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred -------------------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhcccc
Q 009850 226 GEAKETLRRVKPAV 239 (524)
Q Consensus 226 ~eA~~~~~~a~~~~ 239 (524)
.+|+.+|-.|+...
T Consensus 515 kEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999765443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.3e-14 Score=154.93 Aligned_cols=243 Identities=11% Similarity=0.044 Sum_probs=185.9
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
+......+..|+..+..|++++|..++.++|+.+|.++.+|+.||.+|.++|+.+++....-.|-.++|.+. ..|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHH
Confidence 334456788899999999999999999999999999999999999999999999999999999999999997 889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
+....++|.+++|.-+|.+|++. +|.+....+..+.+|.+.|++..|...|.++
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~--------------------------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQA--------------------------NPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--------------------------CCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 99999999999999999999999 6777777777777777777777777777777
Q ss_pred HhhCCCcHH------HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------------------------------
Q 009850 203 LSIAPDNNK------MCNLGICLMKQGRIGEAKETLRRVKPAVADG---------------------------------- 242 (524)
Q Consensus 203 l~l~P~~~~------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~---------------------------------- 242 (524)
+.+.|.... ....+..+...++-+.|+..++.+.....+.
T Consensus 268 ~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 268 LQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred HhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 777772211 1223444444444455555444432200000
Q ss_pred ------C-------------------------------------------------------------------------
Q 009850 243 ------P------------------------------------------------------------------------- 243 (524)
Q Consensus 243 ------~------------------------------------------------------------------------- 243 (524)
+
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 0
Q ss_pred cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccc
Q 009850 244 RGVDSHLKAYERAQQMLK-DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFAD 315 (524)
Q Consensus 244 ~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd 315 (524)
+.+.+|+..|.......+ +.+.+|+.+|.||..+|.+++|+.+|++++..+|.+.....++.-++ +++|+
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~--~~~g~ 498 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY--QQLGN 498 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH--HhcCC
Confidence 334455666666655544 34668999999999999999999999999999999999765534444 44454
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=5.4e-17 Score=161.29 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=98.6
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-
Q 009850 75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA- 151 (524)
Q Consensus 75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~- 151 (524)
..|. .. ...+|.++...|++++|++.+.+.+... |++. .++..+|.+....+++++|+..|++++...+....
T Consensus 5 ~~~~-~~-~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~--~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~ 80 (280)
T PF13429_consen 5 FGPS-EE-ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDP--EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-cc-cccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 4455 23 3477999999999999999997765544 5665 67788999999999999999999999987643222
Q ss_pred -------hhcccHHHHHHH-hHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHH-HHHHHHHHH
Q 009850 152 -------FNGKRTKTARSQ-GKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA--PDNNK-MCNLGICLM 220 (524)
Q Consensus 152 -------~~~~~~~~a~~~-~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~-~~~Lg~~~~ 220 (524)
+..+..+.+... ...+. ...++..+..+..++...++++++...++++.... +.++. |+.+|.++.
T Consensus 81 ~~~l~~l~~~~~~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQLLQDGDPEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 111222222222 12221 23456677788888999999999999999988755 55666 899999999
Q ss_pred HcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 221 KQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 287 (524)
Q Consensus 221 ~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~ 287 (524)
+.|++++|+.+|++++...|++. +..+++...+.......|.++..+..+|.++..+|++++|+..|
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 99999999999999999998865 66677777787777777888889999999999999999999999
Q ss_pred hhcccCCCCCCCcccc
Q 009850 288 SSIWQPQPCKDHILPT 303 (524)
Q Consensus 288 ~~al~~~P~~~~~l~~ 303 (524)
++++..+|.++..+..
T Consensus 238 ~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 238 EKALKLNPDDPLWLLA 253 (280)
T ss_dssp HHHHHHSTT-HHHHHH
T ss_pred cccccccccccccccc
Confidence 9999999999987733
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-14 Score=147.33 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=192.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN 120 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~ 120 (524)
......+|...+...++..|+++|..++.++ .+...+.+.+.+|...|.+.+.+.....+++.....- ......
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999 8888999999999999999999999999887765321 112333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc-cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK-RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~-~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
.+|..|...++++.|+.+|.+++......-.+... ..+.+... ......++|.-..-...-|+.+++.|+|..|+.+|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~-~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKE-AERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH-HHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 46668888999999999999988764332222221 11111111 11123447777777788899999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 278 (524)
.+|+..+|+++. |+|+|.||.++|.+..|+..++ .+++++|++..+|+..|.++..+.
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~---------------------~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK---------------------KCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH---------------------HHHhcCchHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999988 788999999999999999999999
Q ss_pred CHHHHHHHHhhcccCCCCCCCcc
Q 009850 279 RLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 279 ~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+|+.|+..|+.+++.+|.+...+
T Consensus 441 ~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999988755
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-14 Score=146.87 Aligned_cols=245 Identities=11% Similarity=0.041 Sum_probs=209.8
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
+.+..+.+.....+..++..++|.+-.+++...++.+|-+..++-..-.++..+|+..+=...-.+.++.+|+.+ ..|
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a--~sW 315 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA--LSW 315 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC--cch
Confidence 344455666777888889999999999999999999998888776555599999998888888889999999887 677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+..|..|...|++.+|..+|.++..+ +|....+|...|..+.-.|.-++|+.+|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~l--------------------------D~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTL--------------------------DPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhc--------------------------CccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 88899999999999999999999888 8889999999999999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCC----
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLK---- 261 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p---- 261 (524)
..|-++-|.... ...+|.-|.+++++.-|..+|.+|....|.++ ..+.+|...|+.++...+
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 999999888766 77789999999999999999999988888776 566788888888884432
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccc
Q 009850 262 ---DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDD 312 (524)
Q Consensus 262 ---~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~ 312 (524)
.+...+.|||.++.+++++++|+.+|++++.+.|.+..+....+.+|...|
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 355678999999999999999999999999999999998877666666544
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=1.7e-14 Score=150.94 Aligned_cols=232 Identities=22% Similarity=0.198 Sum_probs=168.7
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-- 111 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-- 111 (524)
.|.-..+...+|..|..+|+|+.|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+.-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3455556677999999999999999999999998 566666677799999999999999999999998743
Q ss_pred ---CcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 112 ---DQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 112 ---~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
+++. ..++..|+.+|...|++++|..++++++++...-. ....|+-...+.+++.++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------GASHPEVAAQLSELAAILQ 336 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------------------ccChHHHHHHHHHHHHHHH
Confidence 3432 56788999999999999999999999999842200 0112334556677777777
Q ss_pred HcCCHHHHHHHHHHHHhhC-----CCc---HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------
Q 009850 188 QQNNYIEAEDAYRRALSIA-----PDN---NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------------- 243 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l~-----P~~---~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------------- 243 (524)
..+++++|+.+|++++++- +++ +. +++||.+|..+|++.+|...|++|+.......
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 7777777777777777642 233 11 66777777777777777777777643321111
Q ss_pred ------cCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 244 ------RGVDSHLKAYERAQQ-------MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 244 ------~~~~~A~~~~~~al~-------~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
....+|.+.|.++.. ..|+....+.||+.+|..+|++++|+..-..++
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 122223333433333 245667789999999999999999999877665
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=2e-14 Score=138.87 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=150.2
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD---SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESL 118 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l 118 (524)
+...+.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++. ...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45677899999999999999999999999999999876 67899999999999999999999999999997753 235
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850 119 DNILLDLYKRC--------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN 190 (524)
Q Consensus 119 ~~~lg~~~~~~--------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g 190 (524)
++.+|.++... |++++|++.|++++..++.......-.. ..... ..........+|.+++..|
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~----~~~~~-----~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK----RMDYL-----RNRLAGKELYVARFYLKRG 180 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH----HHHHH-----HHHHHHHHHHHHHHHHHcC
Confidence 67788888876 8899999999999988554322111000 00000 0111223467899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcH---H-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 191 NYIEAEDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~~---~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
++.+|+..|++++...|+.+ . ++.+|.++..+|++++|+.+++.+...+
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999987753 4 8999999999999999999998764444
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=8.7e-14 Score=148.62 Aligned_cols=237 Identities=18% Similarity=0.126 Sum_probs=187.2
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
+++...|..+.+|+.||.+|-.+|+.++++..+-.|--++|.+.+.|..++....++|++++|.-+|.+|++.+|.+-
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~-- 241 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW-- 241 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--
Confidence 466778999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-------------hh-c-ccHHHHHHHhHH---------------
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-------------FN-G-KRTKTARSQGKK--------------- 166 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-------------~~-~-~~~~~a~~~~~~--------------- 166 (524)
.+.+..+.+|.+.|+...|...|.+++++.+..-. +. . ....++..+..+
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni 321 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI 321 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH
Confidence 56677788999999999999999998877530000 00 0 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009850 167 -------------------------------------------------------------------------------- 166 (524)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (524)
T Consensus 322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~ 401 (895)
T KOG2076|consen 322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLH 401 (895)
T ss_pred HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHH
Confidence
Q ss_pred HHHhcC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 167 FQVSVE--Q-EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 167 ~~~~~~--p-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
+....+ | ++++.+..++.+|...|+|.+|+.+|..+....+.... |+.+|.||..+|.+++|+.+|+
T Consensus 402 ~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~-------- 473 (895)
T KOG2076|consen 402 FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYE-------- 473 (895)
T ss_pred HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHH--------
Confidence 000111 2 23567778888888888888888888888887766554 8888888888888888888888
Q ss_pred CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 242 GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 242 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
+++...|++..+...|+.++..+|+.++|++..+.....++.
T Consensus 474 -------------kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 474 -------------KVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred -------------HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 889999999999999999999999999999999998855544
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.4e-14 Score=138.91 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=155.8
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
..++.+......+|.+++..|++.+|+..|+++..++|.+..+.-..|.++...|++++-..+....+....... .-|
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta--~~w 303 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA--SHW 303 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch--hhh
Confidence 334455555555555555555555555555555555555555555555555555555555544444444443222 222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+.-+.+++..+++..|+.+-+++++. +|.+..++...|.++...|+.++|+-.|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~--------------------------~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDS--------------------------EPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhcc--------------------------CcccchHHHhccHHHHhccchHHHHHHH
Confidence 33344444555555555555555555 8999999999999999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC---------------CCcCHHHHHHHHHHHHHhCCCC
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHLKAYERAQQMLKDL 263 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~ 263 (524)
+.|..+.|..-. |-.|-.+|...|++.||...-+.+....+. ++...+.|.+.+++++.+.|.+
T Consensus 358 R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 358 RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 999999999988 889999999999999998877765333222 2345566767777777766665
Q ss_pred HHH---------------------------------HHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 264 ESE---------------------------------MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 264 ~~a---------------------------------~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
..+ |..||.++...+.+.+|+..|..+++++|.+...+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 544 55666667777777777777777777777776655
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.1e-14 Score=129.54 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY 144 (524)
Q Consensus 65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~ 144 (524)
-..+|+++++++|++ ++.+|.++...|++++|+.+|++++..+|.+. .++..+|.++...|++++|+..|++++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 346788999999875 66789999999999999999999999999987 7888999999999999999999999998
Q ss_pred HhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850 145 LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ 222 (524)
Q Consensus 145 l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~ 222 (524)
+ +|+++.+++++|.++...|++++|+..|++++.+.|+++. +.++|.+...+
T Consensus 87 l--------------------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 L--------------------------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred c--------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 8 8999999999999999999999999999999999999998 77888776554
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2e-14 Score=154.37 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDP--EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 49 ~~~lg~~~~~~g~~--~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
++..+..++..|+. +.|...|..+++..|++.-++.+.|.+.+..|+|..|+.+|++++.++|... .......|.++
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIgig~Cf 209 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIGIGHCF 209 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccchhhhHH
Confidence 33334444444444 6777777777777777777777777777777777777777777777766431 12333445566
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhh------hcccHHHHHHHhHHH-----HHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAF------NGKRTKTARSQGKKF-----QVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~------~~~~~~~a~~~~~~~-----~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
..+|+.+.|+..|.+++++++..... ....+.....+...+ ....++.+|.+++.|+.-++..|+|..+
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHH
Confidence 66677777777777777766432221 000111111111111 1233899999999999999999999999
Q ss_pred HHHHHHHHhhCCCcH---H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------------cCHHHHHHHHHHHH
Q 009850 196 EDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------------RGVDSHLKAYERAQ 257 (524)
Q Consensus 196 i~~~~~Al~l~P~~~---~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------------~~~~~A~~~~~~al 257 (524)
......++...-..+ . +|.+|.+|..+|++++|..+|.++....++.. +++..+..+|++.+
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 999999998663332 2 89999999999999999999998766665552 55666777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHhhcccCCCCCCCcc
Q 009850 258 QMLKDLESEMMNKGGDRVEQS----RLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g----~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...|+..+....||.+|...+ ..+.|.....+++...|.+....
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 777777777777777776665 44666666777777776666533
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=2.1e-13 Score=142.22 Aligned_cols=240 Identities=8% Similarity=-0.004 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM-AIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L-a~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.+..|...+..||+++|.+.+.++-+..+ ++..++.+ +.+..+.|+++.|..++.++.+.+|++.. ......+.++.
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~-~~~l~~a~l~l 164 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL-PVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHH
Confidence 45667777788888888877776555433 34444444 45558888888888888888888887642 12223477788
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-- 205 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-- 205 (524)
..|++++|+..++++.+. +|+++.++..++.+|...|+|++|+..+.+..+.
T Consensus 165 ~~g~~~~Al~~l~~~~~~--------------------------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 165 ARNENHAARHGVDKLLEV--------------------------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HCCCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 888888888888888877 7888888888888888888888888555554432
Q ss_pred ----------------------------------------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-
Q 009850 206 ----------------------------------------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP- 243 (524)
Q Consensus 206 ----------------------------------------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~- 243 (524)
.|+++. +..++..+...|+.++|...+++++...++..
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l 298 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL 298 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 233455 66788999999999999999999876443331
Q ss_pred ---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccccc
Q 009850 244 ---------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFA 314 (524)
Q Consensus 244 ---------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lg 314 (524)
++.+.+++..++.++..|+++..+..+|.++...|++.+|...|++++...|.+.... .+..+....|
T Consensus 299 ~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~---~La~~~~~~g 375 (398)
T PRK10747 299 VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA---WLADALDRLH 375 (398)
T ss_pred HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHcC
Confidence 6778899999999999999999999999999999999999999999999999987633 2444455566
Q ss_pred ccccc
Q 009850 315 DENID 319 (524)
Q Consensus 315 d~~~~ 319 (524)
+....
T Consensus 376 ~~~~A 380 (398)
T PRK10747 376 KPEEA 380 (398)
T ss_pred CHHHH
Confidence 65444
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=5.8e-15 Score=141.15 Aligned_cols=222 Identities=15% Similarity=0.108 Sum_probs=154.2
Q ss_pred CCccchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 24 KPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAI 103 (524)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~ 103 (524)
.-++..+.+...++..-.--..++.+..|..+|.+..++..|+..|.+.+...|.+...+...+.++..++++++|.++|
T Consensus 234 lrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 234 LRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred HHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 33456666666666555555577889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850 104 KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG 183 (524)
Q Consensus 104 ~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg 183 (524)
+.+++.+|.+. ......+.-|+-.++.+-|+.+|++.+++. -.+++.++|+|
T Consensus 314 k~vlk~~~~nv--EaiAcia~~yfY~~~PE~AlryYRRiLqmG--------------------------~~speLf~Nig 365 (478)
T KOG1129|consen 314 KLVLKLHPINV--EAIACIAVGYFYDNNPEMALRYYRRILQMG--------------------------AQSPELFCNIG 365 (478)
T ss_pred HHHHhcCCccc--eeeeeeeeccccCCChHHHHHHHHHHHHhc--------------------------CCChHHHhhHH
Confidence 99999999886 344455666778899999999999999883 33344444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC--CcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCH
Q 009850 184 WALMQQNNYIEAEDAYRRALSIAP--DNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGV 246 (524)
Q Consensus 184 ~~~~~~g~~~eAi~~~~~Al~l~P--~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~ 246 (524)
.|.+..++++-++..|++|+.... +... |+|+|.+....|++.-|..+|+-++..+++.. |+.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 444444444444444444444322 1111 44444444444444444444444443333321 344
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009850 247 DSHLKAYERAQQMLKDLESEMMNKGGD 273 (524)
Q Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~lg~~ 273 (524)
+.|...+..+-...|+..+..+|++.+
T Consensus 446 ~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHHHhhhhCccccccccceeEE
Confidence 444444447777888888877777643
No 52
>PLN02789 farnesyltranstransferase
Probab=99.59 E-value=4.6e-13 Score=134.35 Aligned_cols=192 Identities=8% Similarity=-0.052 Sum_probs=166.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCc
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDK-DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA--EEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~--~eAi~~~~~al~~~p~~ 113 (524)
+++...|....+|..+|.++...| ++++++..+.+++..+|.+..+|+.++.++..+|+. ++++.++.+++..+|.+
T Consensus 62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN 141 (320)
T ss_pred HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence 355567888899999999999998 689999999999999999999999999999999974 78899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc---C
Q 009850 114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ---N 190 (524)
Q Consensus 114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~---g 190 (524)
. .+|...+.++...|++++|++++.++|+. +|.+..+|+.+|.++... |
T Consensus 142 y--~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------------------------d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 142 Y--HAWSHRQWVLRTLGGWEDELEYCHQLLEE--------------------------DVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred H--HHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------------------------CCCchhHHHHHHHHHHhccccc
Confidence 7 78888899999999999999999999999 999999999999998876 3
Q ss_pred CH----HHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC
Q 009850 191 NY----IEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK 261 (524)
Q Consensus 191 ~~----~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p 261 (524)
.+ ++++.+..+++.++|++.. |..++.++.. +++..+|+..+. +++...|
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~---------------------~~~~~~~ 252 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL---------------------EVLSKDS 252 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH---------------------HhhcccC
Confidence 33 5788888999999999988 9999999877 344555666666 5666778
Q ss_pred CCHHHHHHHHHHHHHc
Q 009850 262 DLESEMMNKGGDRVEQ 277 (524)
Q Consensus 262 ~~~~a~~~lg~~~~~~ 277 (524)
....++--|+.+|...
T Consensus 253 ~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 253 NHVFALSDLLDLLCEG 268 (320)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 8888888888888753
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=9.4e-13 Score=137.95 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=152.3
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
.|...-.+...|.++...|+++.|..+|.++.+..|++. .+....+.++...|++++|...++++++..|+++ .+..
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~--~~l~ 191 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK--EVLK 191 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHH
Confidence 344444556677888888888888888888888777764 4555568888888888888888888888888887 5667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHh-h-------hcccHHH-HH----HHhHHHHHhcCC----CcHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-F-------NGKRTKT-AR----SQGKKFQVSVEQ----EATRLLGNLG 183 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-~-------~~~~~~~-a~----~~~~~~~~~~~p----~~~~a~~~Lg 183 (524)
.++.+|...|++++|++.+.+..+....... + ....... .. ...... ....| +++.++..+|
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~-~~~~p~~~~~~~~l~~~~a 270 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW-WKNQPRHRRHNIALKIALA 270 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHCCHHHhCCHHHHHHHH
Confidence 7788888888888888888877765211100 0 0000000 00 000000 11123 4666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHH-H--HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhC
Q 009850 184 WALMQQNNYIEAEDAYRRALSIAPDNNK-M--CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML 260 (524)
Q Consensus 184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~--~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~ 260 (524)
..+...|++++|+..++++++..|++.. . ..........++..+++. .++++++..
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~---------------------~~e~~lk~~ 329 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK---------------------LIEKQAKNV 329 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH---------------------HHHHHHHhC
Confidence 7777777777777777777777776654 1 112222233344444444 444788888
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHh--hcccCCCCCCC
Q 009850 261 KDLE--SEMMNKGGDRVEQSRLFDAFLGSS--SIWQPQPCKDH 299 (524)
Q Consensus 261 p~~~--~a~~~lg~~~~~~g~~~eAi~~~~--~al~~~P~~~~ 299 (524)
|+++ ..+..+|+++...|++++|...|+ .+++..|+...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 8888 778888888888888888888888 57777776554
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=2.1e-13 Score=131.80 Aligned_cols=174 Identities=16% Similarity=0.069 Sum_probs=147.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh
Q 009850 75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN 153 (524)
Q Consensus 75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~ 153 (524)
.++..+..++.+|..+...|++++|+..|++++..+|+++. ...++.+|.+|...|++++|+..|+++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-------- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-------- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Confidence 34567889999999999999999999999999999998753 347788999999999999999999999998
Q ss_pred cccHHHHHHHhHHHHHhcCCCcH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHH-H---------
Q 009850 154 GKRTKTARSQGKKFQVSVEQEAT---RLLGNLGWALMQQ--------NNYIEAEDAYRRALSIAPDNNK-M--------- 212 (524)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~p~~~---~a~~~Lg~~~~~~--------g~~~eAi~~~~~Al~l~P~~~~-~--------- 212 (524)
.|+++ .+++.+|.++... |++++|+..|++++..+|++.. +
T Consensus 100 ------------------~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 100 ------------------HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL 161 (235)
T ss_pred ------------------CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 66654 4799999999987 8999999999999999999854 1
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHH
Q 009850 213 --------CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK---DLESEMMNKGGDRVEQSRLF 281 (524)
Q Consensus 213 --------~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~ 281 (524)
..+|.++...|++.+|+..|+ +++...| ..+.+++.+|.++...|+++
T Consensus 162 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~---------------------~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 162 RNRLAGKELYVARFYLKRGAYVAAINRFE---------------------TVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHH---------------------HHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 256777888888888888888 5555544 45689999999999999999
Q ss_pred HHHHHHhhcccCCC
Q 009850 282 DAFLGSSSIWQPQP 295 (524)
Q Consensus 282 eAi~~~~~al~~~P 295 (524)
+|+..++.+....|
T Consensus 221 ~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 221 LAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHhhCC
Confidence 99998877655443
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=5.4e-14 Score=139.40 Aligned_cols=245 Identities=12% Similarity=0.016 Sum_probs=205.7
Q ss_pred hhhhhHHHHhcCCC--ChHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 31 TRSDSFHAIHKVPV--GDTPYVRAKNVQLVD--KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 31 ~~~~~~~~~~~~p~--~~~~~~~lg~~~~~~--g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
.+.+.+++...... ...+-.+|...++.+ .++..|-.+...++.++..++.++.+.|.+-+..|++++|.+.|+.+
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 35555666654422 223445566666663 47899999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
+..+.... .+.+.+|..+..+|+.++|+.+|-+.-.+ --+++.+++.++.+|
T Consensus 517 l~ndasc~--ealfniglt~e~~~~ldeald~f~klh~i--------------------------l~nn~evl~qianiy 568 (840)
T KOG2003|consen 517 LNNDASCT--EALFNIGLTAEALGNLDEALDCFLKLHAI--------------------------LLNNAEVLVQIANIY 568 (840)
T ss_pred HcCchHHH--HHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------------------HHhhHHHHHHHHHHH
Confidence 88776554 66778899999999999999999877655 346788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHH
Q 009850 187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKA 252 (524)
Q Consensus 187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~ 252 (524)
..+.+..+|+++|.++..+-|+++. +..||..|-+.|+..+|..++-.....+|.+. ...+.++..
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999 88999999999999999998877655555543 456778999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccc
Q 009850 253 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 303 (524)
Q Consensus 253 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~ 303 (524)
|+++.-+.|+.......++.|+.+.|+|..|+..|+..-+.-|.+..++.-
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 999999999999988999999999999999999999999999999886633
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-13 Score=139.31 Aligned_cols=247 Identities=15% Similarity=0.066 Sum_probs=157.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~ 129 (524)
..-|+..+..|+|+.|+.+|..+|.++|.+.-.|.+...+|..+|+|++|++.-.+.++++|+.+ ..|..+|..+..+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~--kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWA--KGYSRKGAALFGL 83 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchh--hHHHHhHHHHHhc
Confidence 34566777777777777777777777777777777777777777777777777777777777776 6667777777777
Q ss_pred CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhH--------------------------------------------
Q 009850 130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK-------------------------------------------- 165 (524)
Q Consensus 130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~-------------------------------------------- 165 (524)
|+|++|+..|.+.|+.++.+-.+..++.++......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 777777777777777664443333222211100000
Q ss_pred ----------HHH-------------------HhcCC------------C---------cHHHHHHHHHHHHHcCCHHHH
Q 009850 166 ----------KFQ-------------------VSVEQ------------E---------ATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 166 ----------~~~-------------------~~~~p------------~---------~~~a~~~Lg~~~~~~g~~~eA 195 (524)
... ...+| + -....-.+|+..++..++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000 00011 0 113456678888888888888
Q ss_pred HHHHHHHHhhCCCcHH-HHHH-----------------------------------------HHHHHHcCCHHHHHHHHH
Q 009850 196 EDAYRRALSIAPDNNK-MCNL-----------------------------------------GICLMKQGRIGEAKETLR 233 (524)
Q Consensus 196 i~~~~~Al~l~P~~~~-~~~L-----------------------------------------g~~~~~~G~~~eA~~~~~ 233 (524)
+.+|..++.++ .+.. +.+. |..|.+.++++.|+.+|+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 88888888877 4422 3333 334555566666666666
Q ss_pred HhcccccCC--C-------------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850 234 RVKPAVADG--P-------------------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR 274 (524)
Q Consensus 234 ~a~~~~~~~--~-------------------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 274 (524)
+++..+... . +++..|++.|.+++..+|+++..|.|+|.+|
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 654333221 0 4556667777777777777777777777777
Q ss_pred HHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 275 VEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 275 ~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..+|.+..|+.+.+.+++++|....
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHH
Confidence 7777777777777777777666554
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=7.9e-14 Score=124.14 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850 100 IEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179 (524)
Q Consensus 100 i~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~ 179 (524)
..+|+++++++|++. ..+|.++...|++++|+..|++++.+ +|.+..+|
T Consensus 13 ~~~~~~al~~~p~~~-----~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~a~ 61 (144)
T PRK15359 13 EDILKQLLSVDPETV-----YASGYASWQEGDYSRAVIDFSWLVMA--------------------------QPWSWRAH 61 (144)
T ss_pred HHHHHHHHHcCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------CCCcHHHH
Confidence 468899999999763 35688889999999999999999998 99999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 258 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 258 (524)
+++|.++...|++++|+..|++++.++|+++. ++++|.++..+|++++|+..|+ +++.
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~---------------------~Al~ 120 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ---------------------TAIK 120 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHH
Confidence 99999999999999999999999999999999 9999999999999999999999 8899
Q ss_pred hCCCCHHHHHHHHHHHHHc
Q 009850 259 MLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 259 ~~p~~~~a~~~lg~~~~~~ 277 (524)
..|+++..+.++|.+...+
T Consensus 121 ~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 121 MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hCCCChHHHHHHHHHHHHH
Confidence 9999999999998876554
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=7e-13 Score=142.63 Aligned_cols=254 Identities=16% Similarity=0.116 Sum_probs=117.3
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAG---DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
.+.+|.+...|+..++..|+|..+..+...++... +--.+.++.+|.+|..+|+|++|..+|.++++.++++. ...
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-~l~ 344 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-VLP 344 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-ccc
Confidence 34455555555555555566665555555555543 22234455555666666666666666655555555541 122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhcc------cHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNGK------RTKTARSQGKKFQVSVEQEATRLLGNLGW 184 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~~------~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~ 184 (524)
++-+|++|...|+++.|..+|++++...+.... +.+. +..+....++. ....|.+..+|..++.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~--~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV--LEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH--HhcccccHHHHHHHHH
Confidence 344555555555555555555555554432221 0000 00000111111 1113455555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhh-----CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc-----ccCC-----------
Q 009850 185 ALMQQNNYIEAEDAYRRALSI-----APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA-----VADG----------- 242 (524)
Q Consensus 185 ~~~~~g~~~eAi~~~~~Al~l-----~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~-----~~~~----------- 242 (524)
+|....-| .++.+|..|+.+ .+--+. ++|+|..++..|++.+|...|..++.. +.+.
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 54432222 225555555421 111112 445555555555555555555554322 1111
Q ss_pred -------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 243 -------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 243 -------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
.++...|-+.|...+...|.+..++..+|......+...+|...+..++..+..++.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 022233345555555555555555555554444455555555555555555544444
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=4.4e-12 Score=132.34 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=190.3
Q ss_pred hHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850 46 DTPYVRA-KNVQLVDKDPEKAIPLFWAAINAGDRVDSAL-KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL 123 (524)
Q Consensus 46 ~~~~~~l-g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~-~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg 123 (524)
+..++.+ +......|+++.|..+|.++.+.+|++..+. ...+.++...|++++|+..++++.+..|+++ .+...++
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--~al~ll~ 194 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP--EVLRLAE 194 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHH
Confidence 4455555 5566999999999999999999999986444 3458999999999999999999999999998 6778889
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhc-----------------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-----------------KRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
.+|...|++++|+..+.+..+.......... ...+.....-+.. ....|+++.++..++..+
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l-p~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ-SRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC-CHHHhCCHHHHHHHHHHH
Confidence 9999999999999999888765422111000 0000011100000 122477899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHH
Q 009850 187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKA 252 (524)
Q Consensus 187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~ 252 (524)
...|+.++|...++++++. |.++. ....+.+ ..++.++++..+++..+.+|+++ +.+++|...
T Consensus 274 ~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999994 44444 4334443 45999999999999998888886 788999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 253 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 253 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
|+++++..|+... +..++.++..+|+.++|..+|++++.+.
T Consensus 351 le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999998754 6689999999999999999999997653
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.53 E-value=1.3e-12 Score=134.25 Aligned_cols=212 Identities=17% Similarity=0.065 Sum_probs=168.0
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
.|....+|..+|..+...|+++.|...+.++....+. ..+..+..|.++...|++++|...+++++..+|++. ..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HH
Confidence 4677888999999999999999999999999887664 456678889999999999999999999999999886 33
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
+.. +..+...|++..+.....+++... ...+|....++..+|.++...|++++|+..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLW----------------------APENPDYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhcc----------------------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 332 444445555544444444444320 111677788889999999999999999999
Q ss_pred HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 009850 199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL-ESEMMNKGGDRVE 276 (524)
Q Consensus 199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~ 276 (524)
++++++++|++.. +..+|.++...|++++|+.+++++++..+.. +.. ...++.+|.++..
T Consensus 137 ~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~------------------~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 137 ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS------------------SMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC------------------cchhHHHHHHHHHHHHH
Confidence 9999999999988 8999999999999999999999654433210 111 2357789999999
Q ss_pred cCCHHHHHHHHhhcccCCCC
Q 009850 277 QSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 277 ~g~~~eAi~~~~~al~~~P~ 296 (524)
+|++++|+..|+.++...|.
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CCCHHHHHHHHHHHhccccC
Confidence 99999999999998766653
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-12 Score=137.01 Aligned_cols=260 Identities=16% Similarity=0.070 Sum_probs=193.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
++...|.++.+.|.++..|..+++.+.|..+.+++++. ..++..+|+.|+.++-..+++.+|+.....++.-.|++.
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~-- 547 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH-- 547 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--
Confidence 44556888888999999999999999999999999999 567888999999999999999999999999999888763
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh----------ccHhh--------hc-c------cHHHH----HHHhHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQ----------QGLAF--------NG-K------RTKTA----RSQGKKF 167 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~----------~~~~~--------~~-~------~~~~a----~~~~~~~ 167 (524)
.+......+-...++.++|+....+.+.+.. .+... .. . ....+ ....+.+
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 2223333344457888888888777776642 11110 00 0 00000 0000000
Q ss_pred H---------HhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHH
Q 009850 168 Q---------VSVEQEA-----TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETL 232 (524)
Q Consensus 168 ~---------~~~~p~~-----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~ 232 (524)
. ..-.|+. ...|...+..+...+.-++|..++.++-.++|..+. |+..|.++...|++.+|...|
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 0112222 245667778888888888888888888888888888 888888888888888888888
Q ss_pred HHhcccccCCC-------------cC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 233 RRVKPAVADGP-------------RG--VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 233 ~~a~~~~~~~~-------------~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
..++..+|++. |. ..++.-.+..+++++|.+.++|+.+|.++..+|+.++|..||..++++++.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 88887777775 22 2233337889999999999999999999999999999999999999999887
Q ss_pred CC
Q 009850 298 DH 299 (524)
Q Consensus 298 ~~ 299 (524)
+-
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 65
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=5e-13 Score=125.39 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC
Q 009850 93 QNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172 (524)
Q Consensus 93 ~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (524)
.++.++++..++++++.+|++. ..|..+|.+|...|++++|+..|++++++ +
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------------------------~ 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDYDNALLAYRQALQL--------------------------R 103 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------C
Confidence 4555666666666666666665 56666666666666666666666666666 6
Q ss_pred CCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 173 QEATRLLGNLGWAL-MQQNN--YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 173 p~~~~a~~~Lg~~~-~~~g~--~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
|+++.++.++|.++ ...|+ +++|...++++++.+|++.. ++++|.++.+.|++++|+.+|++++...+...
T Consensus 104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 66666666666653 45555 36666666666666666666 66666666666666666666666655555544
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-13 Score=134.77 Aligned_cols=246 Identities=15% Similarity=0.058 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
-....|..++...+|..|+..|..|+...|+++..|.+.+.+++..|+|++|.-..++.++++|... ......+.++.
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~--k~~~r~~~c~~ 128 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS--KGQLREGQCHL 128 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc--ccccchhhhhh
Confidence 3566788889999999999999999999999999999999999999999999999999999999876 34456667777
Q ss_pred HcCChHHHHHHHHHHHH---------HhhccH-------hhh-----------cccHHHHHHHhHHHHHhcCCCcHHHHH
Q 009850 128 RCGRLDDQIALLKHKLY---------LIQQGL-------AFN-----------GKRTKTARSQGKKFQVSVEQEATRLLG 180 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~---------l~~~~~-------~~~-----------~~~~~~a~~~~~~~~~~~~p~~~~a~~ 180 (524)
..+...+|.+.|+..-. +.+... ++. .+....+.+. ......+++.+..+++
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e-a~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE-AIDILKLDATNAEALY 207 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH-HHHHHhcccchhHHHH
Confidence 77777777665552210 000000 000 0011111110 0112455888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-------------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-------------MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---- 243 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-------------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---- 243 (524)
..|.++...++.+.|+.+|+++|.++|++.. |-..|.-.++.|++..|.++|..++..+|.+.
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 9999999999999999999999999998722 56678888899999999999999988887763
Q ss_pred -------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 244 -------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 244 -------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
++..+|+.....++.+++....++...|.++..+++|++|++.|+++.+....
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77788999999999999999999999999999999999999999999988665
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=6.2e-12 Score=140.31 Aligned_cols=285 Identities=9% Similarity=-0.014 Sum_probs=206.5
Q ss_pred chhhhhhhHHHHhcCCCChHHHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 28 VSRTRSDSFHAIHKVPVGDTPYVRA--KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKS 105 (524)
Q Consensus 28 ~l~~~~~~~~~~~~~p~~~~~~~~l--g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~ 105 (524)
....+...+.... .|.....+..+ |.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++
T Consensus 83 ~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 83 RDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 4444444444443 33333344444 77999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh--------------------c-----------
Q 009850 106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN--------------------G----------- 154 (524)
Q Consensus 106 al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~--------------------~----------- 154 (524)
+...+|... .+..++.++...++..+|+..|+++++..+....+. .
T Consensus 162 l~~~dp~~~---~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 162 LAERDPTVQ---NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred hcccCcchH---HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 999999864 225556666667888779999999987751111000 0
Q ss_pred -----------------------ccH---HHHHHHhHH-----------------------------------------H
Q 009850 155 -----------------------KRT---KTARSQGKK-----------------------------------------F 167 (524)
Q Consensus 155 -----------------------~~~---~~a~~~~~~-----------------------------------------~ 167 (524)
.++ +.+...... +
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 000 000000000 0
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD------NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
.....|-...+....|..|+..++.++|+..|++++.-.|. ... ...|..+|...+++++|..++++.....|
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 00011223456677788999999999999999999886532 222 46788899999999999999999865444
Q ss_pred C----------CC------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 241 D----------GP------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 241 ~----------~~------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
- .+ +++.+|.+.+++.+...|.+...+..+|.++..+|++.+|...++.+..
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 1 00 6788899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccccccccccccc
Q 009850 293 PQPCKDHILPTTNAIKTRDDFADENI 318 (524)
Q Consensus 293 ~~P~~~~~l~~~~l~~~~q~lgd~~~ 318 (524)
.+|.+..+.. ...++...+++..+
T Consensus 479 l~P~~~~~~~--~~~~~al~l~e~~~ 502 (822)
T PRK14574 479 LAPRSLILER--AQAETAMALQEWHQ 502 (822)
T ss_pred hCCccHHHHH--HHHHHHHhhhhHHH
Confidence 9999877542 24444444444443
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=1.9e-12 Score=121.53 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=117.3
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHcCC--hHHH
Q 009850 59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL-YKRCGR--LDDQ 135 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~-~~~~g~--~~eA 135 (524)
.++.++++..++++++.+|++.++|..+|.+|...|++++|+..|++++++.|+++ .++..+|.+ +...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence 56779999999999999999999999999999999999999999999999999998 777888986 477787 5999
Q ss_pred HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
...++++++. +|+++.+++++|.+++..|+|++|+.+|++++++.|.+..
T Consensus 130 ~~~l~~al~~--------------------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALAL--------------------------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHh--------------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999 9999999999999999999999999999999999988766
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.49 E-value=5e-12 Score=141.06 Aligned_cols=202 Identities=12% Similarity=0.029 Sum_probs=172.1
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.....|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...+..++...|+.++|+.++++++ +|.+....
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~ 103 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSR 103 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHH
Confidence 3344577788899999999999999999999999999999997555599999999999999999999999 55444335
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
....+|.+|...|++++|++.|+++++. +|+++.++..++.++...+++++|+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~--------------------------dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKK--------------------------DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 5566688999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850 198 AYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 198 ~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 277 (524)
.+++++..+|.+..+..++.++...++..+|+..|+ ++++..|++..++..+..++...
T Consensus 158 ~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e---------------------kll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 158 QATELAERDPTVQNYMTLSYLNRATDRNYDALQASS---------------------EAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999996556555666666777777888888 77888888888888888888888
Q ss_pred CCHHHHHHHHh
Q 009850 278 SRLFDAFLGSS 288 (524)
Q Consensus 278 g~~~eAi~~~~ 288 (524)
|-..-|.....
T Consensus 217 ~~~~~a~~l~~ 227 (822)
T PRK14574 217 RIVEPALRLAK 227 (822)
T ss_pred CCcHHHHHHHH
Confidence 88777776544
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=1.3e-11 Score=127.75 Aligned_cols=261 Identities=10% Similarity=0.016 Sum_probs=167.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
++...|..+..|...+..+...||...|..++..+++.+|++.+.|+.-..+.....+++.|..+|.++....|.. .
T Consensus 576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe---R 652 (913)
T KOG0495|consen 576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE---R 652 (913)
T ss_pred HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---h
Confidence 4455677777777777777777888888888888888888877777776667777777777777777776666655 4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh---cccHHHHHHH---hHHHH--HhcCCCcHHHHHHHHHHHHHc
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN---GKRTKTARSQ---GKKFQ--VSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~---~~~~~~a~~~---~~~~~--~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
+|.-.+.+...+++.++|+.+++++++.++.-.-+. +..++..... ...+. ...-|+....|..|+.+-.+.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 555555666666777777777777776632211111 0000000000 00111 111466666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH---------HHHHHHHh
Q 009850 190 NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK---------AYERAQQM 259 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~---------~~~~al~~ 259 (524)
|..-.|...+.++.-.+|++.. |...-..-.+.|+.+.|...+.+|+...|...--+.+++. .+..|+..
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh
Confidence 6666666666666666666666 6555566666666666666666666666555433333332 23345555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...++.++...|..+....+++.|...|.++++.+|+++..-
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 666777888899999999999999999999999999998844
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.48 E-value=5.2e-12 Score=118.68 Aligned_cols=178 Identities=20% Similarity=0.153 Sum_probs=152.7
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK 140 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~ 140 (524)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+. .+...+|....+.|++.+|+..++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHHHH
Confidence 3344666777777788998888 8899999999999999999999888888886 555668888889999999999999
Q ss_pred HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850 141 HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219 (524)
Q Consensus 141 ~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~ 219 (524)
++..+ +|+++.+|+.+|.+|.+.|++++|...|.+++++.|..+. ..|+|..|
T Consensus 125 kA~~l--------------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 125 KAARL--------------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHhcc--------------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 99888 8999999999999999999999999999999999999988 89999999
Q ss_pred HHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Q 009850 220 MKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS 288 (524)
Q Consensus 220 ~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~ 288 (524)
.-.|+++.|..++. .+...-+.+..+..|++.+...+|++.+|...-.
T Consensus 179 ~L~gd~~~A~~lll---------------------~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLL---------------------PAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHH---------------------HHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999988 5555666677888999999999999998877643
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=2.6e-12 Score=140.89 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=109.9
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
...+..+++++.||.+....|++++|+.+++.+++..|++..++.+++.++.+++++++|+..+++++..+|+++ ...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHH
Confidence 345666777777888878888888888888888888888877888888888888888888888888888877776 566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+.+|.++.+.|++++|+.+|++++.. +|+++.++..+|.++...|+.++|...|
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--------------------------~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--------------------------HPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777778888888888777765 6777777788888887788888888888
Q ss_pred HHHHhhCCCcHH
Q 009850 200 RRALSIAPDNNK 211 (524)
Q Consensus 200 ~~Al~l~P~~~~ 211 (524)
++|+....+-..
T Consensus 212 ~~a~~~~~~~~~ 223 (694)
T PRK15179 212 QAGLDAIGDGAR 223 (694)
T ss_pred HHHHHhhCcchH
Confidence 887776655444
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=5.6e-12 Score=138.22 Aligned_cols=165 Identities=14% Similarity=0.139 Sum_probs=143.7
Q ss_pred HHHHHHHHcCChHHHHHHH---HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 51 RAKNVQLVDKDPEKAIPLF---WAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~---~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.+-.+.-..|....+...+ .......|++++++++||.+..+.|++++|..+++.++++.|++. .+...++.++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~ 131 (694)
T PRK15179 54 QARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVK 131 (694)
T ss_pred HHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHH
Confidence 3344444555544444444 444455789999999999999999999999999999999999997 67788899999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
+.+++++|+..+++++.. +|+++.+++.+|.++.+.|++++|+.+|++++..+|
T Consensus 132 ~~~~~eeA~~~~~~~l~~--------------------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p 185 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSG--------------------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP 185 (694)
T ss_pred HhccHHHHHHHHHHHhhc--------------------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC
Confidence 999999999999999998 999999999999999999999999999999999999
Q ss_pred CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 208 DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
++.. +.++|.++...|+.++|...|+++.....+..
T Consensus 186 ~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 186 EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9888 99999999999999999999998866555443
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.46 E-value=3.1e-11 Score=123.87 Aligned_cols=219 Identities=12% Similarity=0.002 Sum_probs=158.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR----SRCSDQAQESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al----~~~p~~~~~~l~~ 120 (524)
..+..+..|..+...|++++|+..+++++..+|++..++.. +..+...|++..+.....+++ ..+|... ....
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 118 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLG 118 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHH
Confidence 34556778999999999999999999999999999988775 555555554444444444433 3444444 4556
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
.+|.++...|++++|+..+++++++ +|+++.++..+|.++...|++++|+.+++
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~--------------------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALEL--------------------------NPDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888999999999999999999999 89999999999999999999999999999
Q ss_pred HHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--cCH-HH--------------HHHHHHHHHH
Q 009850 201 RALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--RGV-DS--------------HLKAYERAQQ 258 (524)
Q Consensus 201 ~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--~~~-~~--------------A~~~~~~al~ 258 (524)
+++...|..+. |..+|.++..+|++++|+..|+++....+... ... +. ....++.+..
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~ 252 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLAD 252 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99998874322 56899999999999999999999753333111 100 11 0011111111
Q ss_pred h----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 259 M----LKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 259 ~----~p~--~~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
. .+. ........+.++...|+.++|......+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 253 YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1 111 122334677888899999988887665543
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=2.8e-11 Score=126.84 Aligned_cols=242 Identities=11% Similarity=-0.015 Sum_probs=161.8
Q ss_pred hhhhhHHHHh-cCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 31 TRSDSFHAIH-KVPVGD-TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 31 ~~~~~~~~~~-~~p~~~-~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
.+...+.... ..|... ......+.+++..|++++|+..++..++..|+++.++..++.++...|++++|++.+.+..+
T Consensus 136 ~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 136 RANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444333 344443 34445699999999999999999999999999999999999999999999999999999987
Q ss_pred hCCCcHH-H-HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cHh---------hhcccHHHHHHHhHHHHHhcCC
Q 009850 109 RCSDQAQ-E-SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ----GLA---------FNGKRTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 109 ~~p~~~~-~-~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~----~~~---------~~~~~~~~a~~~~~~~~~~~~p 173 (524)
....++. . .+......-+...+..+++...+.++....+. ... ...+..+.+....... +...|
T Consensus 216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~-l~~~p 294 (409)
T TIGR00540 216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG-LKKLG 294 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH-HhhCC
Confidence 7443221 0 00001111111222222223333333332211 100 0112222222221111 12267
Q ss_pred CcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH--H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850 174 EATRLL--GNLGWALMQQNNYIEAEDAYRRALSIAPDNN--K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 248 (524)
Q Consensus 174 ~~~~a~--~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~--~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~ 248 (524)
++.... ..........++.++++..++++++..|+++ . +..+|.++.+.|++++|..+|+++
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a------------- 361 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV------------- 361 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-------------
Confidence 776432 3334444556889999999999999999999 7 779999999999999999999954
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 249 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
.+++..|+... +..+|.++...|+.++|...|++++..
T Consensus 362 ------~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 362 ------AACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred ------HHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46667777665 559999999999999999999987643
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.42 E-value=7e-12 Score=110.06 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=107.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 67 PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
..|++++..+|++..+.+.+|.++...|++++|+..+++++..+|+++ .++..+|.++...|++++|+..|++++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 468889999999999999999999999999999999999999999887 77788899999999999999999999888
Q ss_pred hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 147 QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 147 ~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+|.++..++.+|.++...|++++|+..|+++++++|++..
T Consensus 81 -------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 -------------------------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 8999999999999999999999999999999999998876
No 74
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=6.8e-11 Score=122.50 Aligned_cols=257 Identities=13% Similarity=0.039 Sum_probs=196.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
+....|.+.+.|+..-.+.+...+++.|..+|.++....|. ...|+.-+.+...+++.++|+.+++.+++..|+.. .
T Consensus 610 af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--K 686 (913)
T KOG0495|consen 610 AFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--K 686 (913)
T ss_pred HHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--H
Confidence 44566778888888888888888888888888888776665 56777778888888888888888888888888876 7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc---ccHHH------HHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG---KRTKT------ARSQGKKFQVSVEQEATRLLGNLGWALMQ 188 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~---~~~~~------a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~ 188 (524)
+|..+|+++.+.++.+.|...|...++..+....+.- +..+. +...... ....+|++...|...-.+-.+
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr-arlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR-ARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH-HHhcCCCcchhHHHHHHHHHH
Confidence 8888888888888888888888888777655544322 11111 1111111 122389999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------CcCHHHHHHHHHHHH
Q 009850 189 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------PRGVDSHLKAYERAQ 257 (524)
Q Consensus 189 ~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------~~~~~~A~~~~~~al 257 (524)
.|+.++|.....+||+-.|.+.. |..--...-+-++-..++..+.+... ++.. ...++.+.+.|.+++
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~-dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-DPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 76554444555666666666665411 1111 145678899999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..+|++.++|..+-..+...|.-++-...|.+..+..|.++.
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 999999999999999999999999999999999888888776
No 75
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.41 E-value=1.9e-11 Score=123.73 Aligned_cols=195 Identities=17% Similarity=0.099 Sum_probs=144.9
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q 009850 8 APPGFRPTKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA 87 (524)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La 87 (524)
.+|+|..++|.|.+.+..+....+...+ ......++..+.-........-+......-..+...+|....+++..+
T Consensus 238 ~~p~yl~THPlp~~RIa~lr~ra~q~p~----~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A 313 (484)
T COG4783 238 QPPEYLLTHPLPEERIADLRNRAEQSPP----YNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRA 313 (484)
T ss_pred CCChHHhcCCCchhHHHHHHHHHHhCCC----CCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHH
Confidence 4566666777666555444311111111 111223333443333332222222222222222333478889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850 88 IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF 167 (524)
Q Consensus 88 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~ 167 (524)
..++..|++++|...++.+++..|+++ .++...++++...++..+|.+.+++++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l---------------------- 369 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALAL---------------------- 369 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------------
Confidence 999999999999999999999999998 56678899999999999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+|+.+..+.++|.+|++.|++.+|+..++..+.-+|+++. |..||.+|..+|+..+|...+.+
T Consensus 370 ----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 370 ----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred ----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 99999999999998888776654
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.40 E-value=2.7e-11 Score=113.89 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=155.6
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
...|...+. ..++..+...|+-+.+.....++....|.+.+.+..+|....+.|+|.+|+..++++..+.|++. .++
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--~~~ 137 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--EAW 137 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--hhh
Confidence 445667777 89999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+.+|.+|.+.|++++|...|.+++++ .|+++.+.+|+|..|.-.|+++.|..++
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L--------------------------~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALEL--------------------------APNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHh--------------------------ccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
..+....+.+.. ..|++.+...+|++++|...-.+
T Consensus 192 l~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 192 LPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999998887777 99999999999999999887664
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=8.1e-12 Score=131.04 Aligned_cols=187 Identities=22% Similarity=0.179 Sum_probs=150.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR--------CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQ 147 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 147 (524)
.|.-..+...+|..|..+|+|+.|+..++.+++. +|.-. .....+|.+|..++++++|+..|++++.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va--~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA--SMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4666677888999999999999999999999998 33332 4556789999999999999999999998832
Q ss_pred ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----c---HH-HHHHHHH
Q 009850 148 QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-----N---NK-MCNLGIC 218 (524)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-----~---~~-~~~Lg~~ 218 (524)
.... ..+|..+.++.+||.+|...|+|++|..++++|+++... . .. +.+++.+
T Consensus 273 ~~~G------------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 273 EVFG------------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HhcC------------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 1111 114566789999999999999999999999999986422 2 22 8899999
Q ss_pred HHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 219 LMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 219 ~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
+..++++++|+.+|++++ +.+..+...+ +..+..+.++|.+|..+|++.+|...|+++++..-.
T Consensus 335 ~~~~~~~Eea~~l~q~al--------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKAL--------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHhcchhHHHHHHHHHH--------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 999999999999999753 3344333333 366788999999999999999999999999976533
No 78
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=123.51 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER 255 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~ 255 (524)
+-+-+-|+-+++.++|++|+..|.+||+++|.++. |||++.+|.++|.++.|+..++ .
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce---------------------~ 140 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCE---------------------S 140 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHH---------------------H
Confidence 34556688888888999999999999999999888 8889999999999998888888 7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccc
Q 009850 256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADEN 317 (524)
Q Consensus 256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~ 317 (524)
++.++|.+..+|..||.+|..+|++.+|+..|++++.++|.+..... ++-++++.+++..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~--nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKS--NLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHH--HHHHHHHHhcCCC
Confidence 88888888889999999999999999999999999999998886553 3666666665544
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6e-12 Score=124.28 Aligned_cols=171 Identities=14% Similarity=0.086 Sum_probs=151.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--------- 115 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~--------- 115 (524)
+..+-..-+.++...|++++|+..--..+++++.+.++++..|.|++..++.+.|+.+|++++.++|+...
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 33344556788999999999999999999999999999999999999999999999999999999997632
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHHHHHcC
Q 009850 116 -ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWALMQQN 190 (524)
Q Consensus 116 -~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g 190 (524)
...+..-|.-.++.|+|..|.++|..+|.+ +|++ +..|.+++.+..++|
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--------------------------dP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNI--------------------------DPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcC--------------------------CccccchhHHHHHHhHhhhcccC
Confidence 234456677788999999999999999999 6665 568999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
+..+|+...+.++.++|.... +...|.|+..+++|++|+++|+++.....+
T Consensus 302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999 999999999999999999999998655444
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.2e-10 Score=110.15 Aligned_cols=232 Identities=17% Similarity=0.192 Sum_probs=167.9
Q ss_pred hhhhH-HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 32 RSDSF-HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-----DSALKDMAIVMKQQNRAEEAIEAIKS 105 (524)
Q Consensus 32 ~~~~~-~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~La~~~~~~g~~~eAi~~~~~ 105 (524)
+.+.| +.+...|...++++.||+.+...|..+.||.+-+..++. |+. .-++..||.-|+..|-++.|...|..
T Consensus 54 AvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~ 132 (389)
T COG2956 54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ 132 (389)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33433 455667788889999999999999999999988776654 432 35678899999999999999999998
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhh--------------hcccHHHHHHH-hHHHHHh
Q 009850 106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF--------------NGKRTKTARSQ-GKKFQVS 170 (524)
Q Consensus 106 al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~--------------~~~~~~~a~~~-~~~~~~~ 170 (524)
.+... ... ..+...|..+|....+|++|++.-++...+......+ .....+.+... .++ ..
T Consensus 133 L~de~-efa-~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA--lq 208 (389)
T COG2956 133 LVDEG-EFA-EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA--LQ 208 (389)
T ss_pred Hhcch-hhh-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--Hh
Confidence 87643 222 2566777889999999999999998887775322210 01122222222 222 23
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----
Q 009850 171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----- 243 (524)
Q Consensus 171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----- 243 (524)
-+|....+-..+|.++...|+|++|++.++.+++.+|+... .-.|..||..+|+.++....+.++....+...
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l 288 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELML 288 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHH
Confidence 38889999999999999999999999999999999999877 77789999999999999999997755554432
Q ss_pred -------cCHHHHHHHHHHHHHhCCCCHHHHH
Q 009850 244 -------RGVDSHLKAYERAQQMLKDLESEMM 268 (524)
Q Consensus 244 -------~~~~~A~~~~~~al~~~p~~~~a~~ 268 (524)
...+.|...+.+-+...|..-..+-
T Consensus 289 ~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 289 ADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 3344455555555666665544433
No 81
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=8.5e-11 Score=116.99 Aligned_cols=203 Identities=16% Similarity=0.212 Sum_probs=162.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
++.....++.+..+.|++.+..|++++|...|++++..+....++++++|..+..+|+.++|+++|-++..+--++. .
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--E 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--H
Confidence 44555567778889999999999999999999999999999999999999999999999999999999877777776 6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh---HHHH-----HhcCCCcHHHHHHHHHHHHHc
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG---KKFQ-----VSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~---~~~~-----~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
+...++.+|..+.+..+|+++|.++..+.+.......+..+..-..+ ++++ ...-|-+.++.-.||..|...
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 77888999999999999999999998887666554432221111111 1111 122488888888899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 190 NNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~~-~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
.-+++|+.+|+++--+.|+...| ..++.|+.+.|+|..|...|+.....+|.+
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 99999999999999999988884 568899999999999999999766555544
No 82
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=117.46 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
..-.-|.-++..++|.+|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|.+. .+|..||.+|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS--KAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH--HHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999999987 88899999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
.+|++.+|++.|+++|++ +|++..++.+|.++-.+.+...
T Consensus 161 ~~gk~~~A~~aykKaLel--------------------------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALEL--------------------------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhcc--------------------------CCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 9999999999998888777665
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=7.5e-11 Score=113.96 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=155.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
+|.+.+-++.+|.-+...|++.+|+..|..+++.+|++- .+.+..+.+|...|+-.-|+.-+.+++++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlel---------- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLEL---------- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhc----------
Confidence 556777889999999999999999999999999999985 67788899999999999999999999999
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--------------H--HHHHHHH
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--------------M--CNLGICL 219 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--------------~--~~Lg~~~ 219 (524)
.|+...+....|.+++++|.+++|+..|+.+|..+|.+.. | ......+
T Consensus 102 ----------------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 102 ----------------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred ----------------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999996621 1 2223344
Q ss_pred HHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 220 MKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG 286 (524)
Q Consensus 220 ~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~ 286 (524)
.-.|+...|+....++++..+-+. +....|+..++.+-.+..++.+.++.++.+++..|+.+.++..
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 556777777777776655444332 4445566666666666666677777777777777777777777
Q ss_pred HhhcccCCCCCCCcc
Q 009850 287 SSSIWQPQPCKDHIL 301 (524)
Q Consensus 287 ~~~al~~~P~~~~~l 301 (524)
.+..++++|++-.+.
T Consensus 246 iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHccCcchhhHH
Confidence 777777777665543
No 84
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.33 E-value=1.9e-10 Score=128.91 Aligned_cols=243 Identities=14% Similarity=0.039 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR--CSDQAQESLDNILL 123 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~l~~~lg 123 (524)
...+..+...|.+.|++++|...|+... +.+..+|..+...|.+.|++++|+..|++.... .|+. ..+..+.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---~t~~~ll 332 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---FTFSIMI 332 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence 3445666666677777777777666542 335566666667777777777777777666543 2333 3445555
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhc-c------H--hh-hcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQ-G------L--AF-NGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~-~------~--~~-~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
..+.+.|++++|.+.+..+++.... . + .+ ..+..+.+....... ...+..+|+.+...|.+.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m----~~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC----CCCCeeeHHHHHHHHHHcCCHH
Confidence 6666666666666666666554310 0 0 01 012223332222211 1124456666677777777777
Q ss_pred HHHHHHHHHHhh--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccc---cCC------------CcCHHHHHHHHHHH
Q 009850 194 EAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV---ADG------------PRGVDSHLKAYERA 256 (524)
Q Consensus 194 eAi~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~---~~~------------~~~~~~A~~~~~~a 256 (524)
+|++.|+++.+. .|+...+..+..++.+.|+.++|..+|+...... |+. .|..++|.+.+++.
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 777777766653 3554446666666666677777766666654322 211 15556666555432
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 257 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 257 l~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
...| +...|..+...+...|+++.|...++.++...|.+...
T Consensus 489 -~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 489 -PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred -CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence 1222 23456666666666666666666666666666665443
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=7.7e-11 Score=103.41 Aligned_cols=112 Identities=22% Similarity=0.229 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHH
Q 009850 101 EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180 (524)
Q Consensus 101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~ 180 (524)
..|++++..+|++. .....+|..+...|++++|+..|++++.. +|.++.++.
T Consensus 4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~ 55 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAY--------------------------DPYNSRYWL 55 (135)
T ss_pred hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHh--------------------------CCCcHHHHH
Confidence 46889999999886 56788899999999999999999999988 899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
.+|.++...|++++|+.+|++++..+|+++. ++++|.++...|++++|+..|+++....+
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999 99999999999999999999995544433
No 86
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.30 E-value=2.3e-09 Score=123.12 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQESLDNILL 123 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~l~~~lg 123 (524)
..|..+-..|.+.|++++|...|+++.+... -+...|..+...|.+.|++++|+..|+...... |+. ..++.+.
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~---vTYnsLI 549 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR---VVFNALI 549 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence 3444444555555555555555555544321 134444445555555555555555555443321 222 2344444
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKL 143 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al 143 (524)
..|.+.|++++|.++|.++.
T Consensus 550 ~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44444455555555544443
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-10 Score=114.71 Aligned_cols=202 Identities=16% Similarity=0.132 Sum_probs=160.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
..+.|+--|...+..+++..|+.+-.++|+.+|.+..++...|.++..+|+.++|+-.|+.+..+.|... ..+.-|..
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--~~Y~GL~h 376 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--EIYRGLFH 376 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--HHHHHHHH
Confidence 4456888889999999999999999999999999999999999999999999999999999999999776 67788888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccH---hhhc--------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGL---AFNG--------KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~---~~~~--------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
+|...|++.+|...-+.+++..+.+. .+.+ ...+.+..+..+ .+.++|+...+-..++.++...|.++
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek-~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK-SLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh-hhccCCccHHHHHHHHHHHHhhCccc
Confidence 99999999999988888877643221 1111 122222222221 24557888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 194 EAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 194 eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
.++..+++.+...|++.-+..||.++...+.+.+|+..|. .++.++|++..+.-.+
T Consensus 456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~---------------------~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYY---------------------KALRQDPKSKRTLRGL 511 (564)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHH---------------------HHHhcCccchHHHHHH
Confidence 8888888888888887778888888888888888888888 6777777776554443
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=128.89 Aligned_cols=212 Identities=16% Similarity=0.080 Sum_probs=139.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
-..+|..+...|-...|+..|++. +.|-....||...|+..+|.....+-++.+|+. .+|..+|++...
T Consensus 401 q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~---~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP---RLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc---hhHHHhhhhccC
Confidence 345666666666666666666653 556666666666666666666666666633333 455555555444
Q ss_pred cCChHHHHHHHHHHHHHhhccH--h-hhcccHHHHH-HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 129 CGRLDDQIALLKHKLYLIQQGL--A-FNGKRTKTAR-SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~--~-~~~~~~~~a~-~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
..-|++|.++.+..-....... . +....+..+. .+.. ...++|-....|+.+|.+..+.++++.|..+|..++.
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~--sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER--SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH--HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 4444444444443322211110 0 1111111111 1111 1233888899999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 283 (524)
++|++.. |.|++.+|.+.|+..+|...+.+ +++-+-+....|-|.-.+..+.|.+++|
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E---------------------AlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE---------------------ALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHH---------------------HhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 9999998 99999999999999999999884 4444445556667777788888999999
Q ss_pred HHHHhhcccCC
Q 009850 284 FLGSSSIWQPQ 294 (524)
Q Consensus 284 i~~~~~al~~~ 294 (524)
+..|.+.+.+.
T Consensus 607 ~~A~~rll~~~ 617 (777)
T KOG1128|consen 607 IKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhh
Confidence 99988877553
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=1.8e-10 Score=101.57 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=58.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
++.-+..+.+|..++..|++++|...|+-+..++|.+. ..|+.||.++..+|+|.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----------- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQI----------- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------
Confidence 44455555555555555555555555555555555554 44555555555555555555555555555
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+|+++..++++|.|++..|+.+.|...|+.++...
T Consensus 99 ---------------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---------------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555544
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.9e-09 Score=100.68 Aligned_cols=176 Identities=18% Similarity=0.087 Sum_probs=148.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG 130 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g 130 (524)
....+.+..|+.+-|..++.+.-...|+........|..+...|++++|+++|+..+.-+|.+. .++.....+...+|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcC
Confidence 4556677889999999999999988999999999999999999999999999999999999885 44555556677899
Q ss_pred ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850 131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN 210 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 210 (524)
+.-+|++.+...++. -+.|.++|..++.+|...|+|++|.-+|++++-+.|.++
T Consensus 135 K~l~aIk~ln~YL~~--------------------------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK--------------------------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred CcHHHHHHHHHHHHH--------------------------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 999999999998888 789999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 211 K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 211 ~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
. +..+|.+++-+|-.+. + ..+.+.|.+++.+.|.+..+++.+-.
T Consensus 189 l~f~rlae~~Yt~gg~eN----~--------------~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAEN----L--------------ELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHHHHHHhhHHH----H--------------HHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 9 7789999988875221 1 12444555888888877777666543
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=4.1e-09 Score=111.99 Aligned_cols=245 Identities=13% Similarity=0.029 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
+...-...++...|++++|+.++......-.+....+...|.++..+|++++|...|+.++..+|++. ..+..+..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~--~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY--DYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHH
Confidence 34555667778888888888888887777778788888888888888888888888888888888875 3334444333
Q ss_pred HHc-----CChHHHHHHHHHHHHHhhccHh---------------------------------------hhc--ccHHHH
Q 009850 127 KRC-----GRLDDQIALLKHKLYLIQQGLA---------------------------------------FNG--KRTKTA 160 (524)
Q Consensus 127 ~~~-----g~~~eA~~~~~~al~l~~~~~~---------------------------------------~~~--~~~~~a 160 (524)
... ...+.-..+|++....++.+.+ +.. ......
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 111 1344445555554433321111 000 001111
Q ss_pred HHHhHHHHHh--------------cCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850 161 RSQGKKFQVS--------------VEQEA--TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 223 (524)
Q Consensus 161 ~~~~~~~~~~--------------~~p~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G 223 (524)
......+... ..|.. ..+++.++..|-..|++++|+.+.++||+..|..++ ++..|.++...|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 1111111111 01122 357789999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCC-------HHHH--HHHHHHHHHcCCHH
Q 009850 224 RIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDL-------ESEM--MNKGGDRVEQSRLF 281 (524)
Q Consensus 224 ~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~-------~~a~--~~lg~~~~~~g~~~ 281 (524)
++.+|..+++.+...+..+- +..++|.+.+.......-+- --.| ...|.+|.++|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999977666553 67777777666554444111 1133 44589999999999
Q ss_pred HHHHHHhhcccC
Q 009850 282 DAFLGSSSIWQP 293 (524)
Q Consensus 282 eAi~~~~~al~~ 293 (524)
.|+..|..+.+.
T Consensus 323 ~ALk~~~~v~k~ 334 (517)
T PF12569_consen 323 LALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999988766543
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=1.8e-10 Score=124.21 Aligned_cols=172 Identities=12% Similarity=0.100 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHH
Q 009850 60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALL 139 (524)
Q Consensus 60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~ 139 (524)
.+...|+..|-+++++++..+.++..||.+|+.--+...|..+|++|.++++.+. ..+...++.|.+...++.|....
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHHH
Confidence 3477888888888888888888888888888877788888888888888888775 55566677777888888877775
Q ss_pred HHHHHHhhccH----------hhhc-cc-HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 140 KHKLYLIQQGL----------AFNG-KR-TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 140 ~~al~l~~~~~----------~~~~-~~-~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
-.+-+..+... .+.. +. ..+...++. ....+|.+...|..+|.+|...|+|..|+..|.+|..++|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs--ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS--ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH--HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 54444321111 1111 11 111111111 1233788888888888888888888888888888888888
Q ss_pred CcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 208 DNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.+.. .+..+......|+|.+|+..+..+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8777 777788888888888888888764
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=9.7e-10 Score=111.49 Aligned_cols=153 Identities=21% Similarity=0.141 Sum_probs=140.6
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
+....++|..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|++.+++++.++|+.+ .++..+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999999999999999986 788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|..|.+.|++.+|+..+...+.- +|+++..|..|+.+|..+|+-.+|...
T Consensus 381 a~all~~g~~~eai~~L~~~~~~--------------------------~p~dp~~w~~LAqay~~~g~~~~a~~A---- 430 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFN--------------------------DPEDPNGWDLLAQAYAELGNRAEALLA---- 430 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc--------------------------CCCCchHHHHHHHHHHHhCchHHHHHH----
Confidence 99999999999999999999877 899999999999999999999888776
Q ss_pred HhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 203 LSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 203 l~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
.+..|...|++++|+..+..+....
T Consensus 431 ------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 ------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4566668889999998888765444
No 94
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.25 E-value=2.2e-09 Score=120.29 Aligned_cols=241 Identities=14% Similarity=0.047 Sum_probs=133.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-DQAQESLDNI 121 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~l~~~ 121 (524)
+..+|..+...|...|++++|+..|++.... .| +...+..+..++.+.|++++|.+.+..+++..- .+. .+++.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~--~~~~~ 365 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI--VANTA 365 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe--eehHH
Confidence 4445666666666666666666666666543 23 344566666666666666666666666665542 222 34556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhh-------ccHhhhcccHHHHH-HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQ-------QGLAFNGKRTKTAR-SQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~-------~~~~~~~~~~~~a~-~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
+...|.+.|++++|...|++..+.+. .+++. .+..+.+. .+.+.....+.|+ ..++..+-.++.+.|+.+
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~-~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN-HGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHH
Confidence 66666666666666666665543221 01111 12223332 2222233333444 334555556666666666
Q ss_pred HHHHHHHHHHhh---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCC------------CcCHHHHHHHHHHHHH
Q 009850 194 EAEDAYRRALSI---APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADG------------PRGVDSHLKAYERAQQ 258 (524)
Q Consensus 194 eAi~~~~~Al~l---~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~------------~~~~~~A~~~~~~al~ 258 (524)
+|..+|+.+.+. .|+...|..+..+|.+.|++++|.+.+++. +..|+. .++.+.+...+++.++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 666666666542 233333556666666666666666666653 111111 1455566666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
..|+....|..+..+|...|++++|...++...
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666666666666666666666666665544
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.23 E-value=4e-10 Score=99.42 Aligned_cols=101 Identities=16% Similarity=-0.011 Sum_probs=95.5
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
+..-+..+.+|..++..|++++|...|+.+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++ ..+..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--QAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHH
Confidence 344567889999999999999999999999999999999999999999999999999999999999999998 677889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l 145 (524)
|.++...|+.+.|...|+.++..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988
No 96
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.22 E-value=7.5e-09 Score=118.90 Aligned_cols=245 Identities=11% Similarity=0.020 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-QAQESLDNI 121 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l~~~ 121 (524)
.+...|..+-..+...|++++|...|+.+.+... -+...|..+...|.+.|++++|.+.|+++...... +. ..|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv--vTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV--HTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH--HHHHH
Confidence 3556788888889999999999999999988643 35678888999999999999999999998876432 33 67788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHh--hccHh--------hhcccHHHHHHHhHHHH---HhcCCCcHHHHHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLI--QQGLA--------FNGKRTKTARSQGKKFQ---VSVEQEATRLLGNLGWALMQ 188 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~--~~~~~--------~~~~~~~~a~~~~~~~~---~~~~p~~~~a~~~Lg~~~~~ 188 (524)
+...|.+.|++++|+.+|+.+.... +.... ...+..+.+........ ..+.|+ ..+|..+-..|.+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k 591 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 8889999999999999999886543 11111 11123333333333222 123444 4567777777888
Q ss_pred cCCHHHHHHHHHHHHhhCC-CcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc--ccCC------------CcCHHHHHHH
Q 009850 189 QNNYIEAEDAYRRALSIAP-DNNK-MCNLGICLMKQGRIGEAKETLRRVKPA--VADG------------PRGVDSHLKA 252 (524)
Q Consensus 189 ~g~~~eAi~~~~~Al~l~P-~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~--~~~~------------~~~~~~A~~~ 252 (524)
.|++++|.+.|+++.+.+. .+.. |..+...|.+.|++++|+..|++.... .|+. .++.++|.+.
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888888888888877652 2333 777777777888888888877776433 2221 1556666666
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 253 YERAQQML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 253 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
+++..+.. +-+...+..+...|.+.|++++|+..|+...
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 66665543 2334566666666666677666666666553
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.22 E-value=9.1e-10 Score=121.97 Aligned_cols=137 Identities=9% Similarity=0.020 Sum_probs=99.3
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ---- 115 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~---- 115 (524)
.+-|...++|..|...+...+++++|+..++.++...|+....++.+|.++.+.+++.+|... .++...+.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 456778889999999999999999999999999999999999999999999999998877666 55555554320
Q ss_pred -------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850 116 -------------ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182 (524)
Q Consensus 116 -------------~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L 182 (524)
-.+++.+|.+|.++|++++|...|++++++ +|+++.+++++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------------------------D~~n~~aLNn~ 156 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------------------------DRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------------------CcccHHHHHHH
Confidence 024455566666666666666666666666 56666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 009850 183 GWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l 205 (524)
|..|... +.++|+.++.+|+..
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH
Confidence 6666665 666666666666553
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-09 Score=113.75 Aligned_cols=272 Identities=13% Similarity=0.054 Sum_probs=214.0
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQ 115 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~ 115 (524)
..++...++..|-.+.......|+++.+.+.|++++...-...+.|+.++.+|...|....|+..++..+... |+++.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3445566777888899999999999999999999999888888999999999999999999999999999998 66652
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------h-----ccHhhhc-----cc--------HHHHHHHhHHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLI--------Q-----QGLAFNG-----KR--------TKTARSQGKKFQV 169 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~--------~-----~~~~~~~-----~~--------~~~a~~~~~~~~~ 169 (524)
.+...-..++.+.|.+++++.+..+++... + .|+++.. .. .+....+.++ +
T Consensus 395 -~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a--v 471 (799)
T KOG4162|consen 395 -VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA--V 471 (799)
T ss_pred -HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH--H
Confidence 233333455678899999999999998843 1 1111100 00 1111111111 4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---- 243 (524)
Q Consensus 170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---- 243 (524)
..+|.|+.+.+.++.-|..+++.+.|.++.++++++++.+ .. |..++.++...+++.+|+.....++..+++++
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 5589999999999999999999999999999999996665 44 99999999999999999999998877766622
Q ss_pred --------------------------------------------------------------------------------
Q 009850 244 -------------------------------------------------------------------------------- 243 (524)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (524)
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence
Q ss_pred --------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 244 --------------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 244 --------------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
+..+++.-++.++-.+.|-.+..|+..|.++..+|.+.+|..+|..++
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 122345567788888889899999999999999999999999999999
Q ss_pred cCCCCCCCccccccccccccc
Q 009850 292 QPQPCKDHILPTTNAIKTRDD 312 (524)
Q Consensus 292 ~~~P~~~~~l~~~~l~~~~q~ 312 (524)
.++|++......++.++.+.|
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhC
Confidence 999999997755444444333
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=4.9e-10 Score=114.90 Aligned_cols=113 Identities=14% Similarity=-0.003 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
+...|..++..|+|++|+.+|++++..+|++..+++.+|.+|..+|++++|+..+++++.++|+++ .+++.+|.+|..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999987 678899999999
Q ss_pred cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850 129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
+|++++|+..|++++++ +|++..+...++.+....
T Consensus 83 lg~~~eA~~~~~~al~l--------------------------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASL--------------------------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 899998888887776555
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=1.6e-08 Score=100.16 Aligned_cols=240 Identities=12% Similarity=0.063 Sum_probs=195.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~ 129 (524)
.+-|..-+..|+|.+|+....+.-+..+.-.-++..-+.+-.++|+++.|-.++.++-+..+++.. ......+.+....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-AVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-HHHHHHHHHHHhC
Confidence 345677788999999999999988877776777777789999999999999999999999666532 4556778888899
Q ss_pred CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 009850 130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA--- 206 (524)
Q Consensus 130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--- 206 (524)
|+++.|.....++++. .|.++.++...-.+|...|+|.+....+.+.-+..
T Consensus 167 ~d~~aA~~~v~~ll~~--------------------------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 167 RDYPAARENVDQLLEM--------------------------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred CCchhHHHHHHHHHHh--------------------------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 9999999999999988 88888899888899999999888877776654321
Q ss_pred ---------------------C------------------CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----
Q 009850 207 ---------------------P------------------DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG---- 242 (524)
Q Consensus 207 ---------------------P------------------~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~---- 242 (524)
+ .++. -..++.-+..+|+.++|....+++++..-+.
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~ 300 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR 300 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence 1 1122 3456667889999999999999987665444
Q ss_pred ------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccccccc
Q 009850 243 ------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADE 316 (524)
Q Consensus 243 ------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~ 316 (524)
+++...-++..++.+...|+.+..+..||..+.+.+.|.+|...++.+++..|...... -+.+....+|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~---~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA---ELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH---HHHHHHHHcCCh
Confidence 26667788999999999999999999999999999999999999999999999877744 245555666665
Q ss_pred ccc
Q 009850 317 NID 319 (524)
Q Consensus 317 ~~~ 319 (524)
...
T Consensus 378 ~~A 380 (400)
T COG3071 378 EEA 380 (400)
T ss_pred HHH
Confidence 544
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=9.8e-10 Score=115.71 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=152.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--hh
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--FN 153 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--~~ 153 (524)
-|........+|.++...|-..+|+..|++. ..|.....+|...|+..+|....++-++..+.... +.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~L 463 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLL 463 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHh
Confidence 4555667788999999999999999999987 34445566788889999999988888874433332 12
Q ss_pred cc------cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHH
Q 009850 154 GK------RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIG 226 (524)
Q Consensus 154 ~~------~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~ 226 (524)
+. .++.+..+. +-.++.+...+|......++|+++.++|+..++++|-... |+++|.|..+++++.
T Consensus 464 GDv~~d~s~yEkawEls-------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELS-------NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHh-------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 21 222232222 2234557788888888899999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.|..+|. +.+...|+...+|.|++..|...|+..+|...+..+++.+-.+..+-
T Consensus 537 ~av~aF~---------------------rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 537 AAVKAFH---------------------RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred HHHHHHH---------------------HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 9999999 88999999999999999999999999999999999999997776644
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=8.5e-10 Score=119.14 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMK-----QQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~-----~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
..+-......+....+.++--+|.+++...-+-....+..+..++ ...+...|+.+|-+++++++..+ ..+..
T Consensus 420 ~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~a--paf~~ 497 (1238)
T KOG1127|consen 420 ITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLA--PAFAF 497 (1238)
T ss_pred HHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchh--HHHHH
Confidence 333333444444444455555555555544443333333322222 23458899999999999999887 67788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hhc-ccHHHH-HHHhHHHHHhcCCCc--HHHHHHHHHHHHHc
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FNG-KRTKTA-RSQGKKFQVSVEQEA--TRLLGNLGWALMQQ 189 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~~-~~~~~a-~~~~~~~~~~~~p~~--~~a~~~Lg~~~~~~ 189 (524)
||.+|+..-+...|..+|++|.+++..... +.. ...+.+ .......+ ..|.. ...|..+|..|...
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccccccCc
Confidence 999999999999999999999998733221 111 112222 22111111 12222 34566689999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHH
Q 009850 190 NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 268 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 268 (524)
++..+|+..|+.+++.+|.+.. |..+|.+|...|++.-|+..|. ++..++|...-+.+
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~---------------------kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT---------------------KASLLRPLSKYGRF 634 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh---------------------hhHhcCcHhHHHHH
Confidence 9999999999999999999988 9999999999999999998888 67777777777778
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 269 NKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 269 ~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
..+......|+|.+|+..+..++..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888888888888888777666543
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.15 E-value=9.8e-10 Score=112.68 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS 162 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~ 162 (524)
+...|..++..|+|++|+.+|++++.++|+++ .++..+|.+|...|++++|+..+++++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----------------- 65 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIEL----------------- 65 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 56678899999999999999999999999987 67888999999999999999999999999
Q ss_pred HhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850 163 QGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ 222 (524)
Q Consensus 163 ~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~ 222 (524)
+|+++.+++.+|.+++.+|+|++|+..|++++.++|++.. ...++.|..++
T Consensus 66 ---------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 66 ---------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ---------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988 66677775555
No 104
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-10 Score=115.12 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----- 243 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----- 243 (524)
..++-+||+.|+-+|+|++|+.+-+.-+.+..+..+ +.|+|.|+.-+|+++.|+++|+..+.....--
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 468889999999999999999999988887655422 67999999999999999999998632211110
Q ss_pred --------------cCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 244 --------------RGVDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 244 --------------~~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..+..|+.++.+-+.+. -....+++.||..|-..|..++|+...+..++..-....
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D 350 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVND 350 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 23455565555544432 344578999999999999999999999999999865444
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.9e-09 Score=108.89 Aligned_cols=214 Identities=17% Similarity=0.157 Sum_probs=158.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
++.--+.+...|+|++|+....+++...|++..+.+..-.++.+.++|++|+...+.-......+ ...+..+.|.++
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHHH
Confidence 33444566788999999999999999999999999999999999999999996655433322223 222566788889
Q ss_pred cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 009850 129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA-- 206 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-- 206 (524)
++..++|+..++- + ++.+..+....|.+++++|+|++|+..|+..++-+
T Consensus 92 lnk~Dealk~~~~---~--------------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 92 LNKLDEALKTLKG---L--------------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred cccHHHHHHHHhc---c--------------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 9999999998882 2 56667788888999999999999999998875422
Q ss_pred ----------------------------CCcH-H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Q 009850 207 ----------------------------PDNN-K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERA 256 (524)
Q Consensus 207 ----------------------------P~~~-~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~a 256 (524)
|++. + +||.+.++...|+|.+|++.++.++.........-+.. -
T Consensus 143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~------e 216 (652)
T KOG2376|consen 143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN------E 216 (652)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc------h
Confidence 2212 2 78999999999999999999998732211111000000 0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 257 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 257 l~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
-.+..+.......++.++..+|+..+|...|...++.+|.+...
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 11112233467889999999999999999999999999988763
No 106
>PLN03077 Protein ECB2; Provisional
Probab=99.11 E-value=1.1e-08 Score=117.31 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=168.4
Q ss_pred cchhhhhhhHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 27 GVSRTRSDSFHAIHKVP--VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK 104 (524)
Q Consensus 27 ~~l~~~~~~~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~ 104 (524)
+.+......+..+...+ .....+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555555555444433 3445678888999999999999999988643 345678888899999999999999999
Q ss_pred HHHHh-CCCcHHH--------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----
Q 009850 105 SLRSR-CSDQAQE--------------------------------SLDNILLDLYKRCGRLDDQIALLKHKLYLI----- 146 (524)
Q Consensus 105 ~al~~-~p~~~~~--------------------------------~l~~~lg~~~~~~g~~~eA~~~~~~al~l~----- 146 (524)
+.+.. .|+...+ .+++.+...|.+.|++++|...|+.. ..+
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n 558 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWN 558 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHH
Confidence 88754 3333100 11223446677777777777777665 111
Q ss_pred --hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHH
Q 009850 147 --QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI---APDNNKMCNLGICLMK 221 (524)
Q Consensus 147 --~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~~~~Lg~~~~~ 221 (524)
-.+....+...++...+.+.......|+.. ++..+-..+.+.|++++|..+|+.+.+. .|+...|..+..++.+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 011111122233333333333344456544 4555555677788888888888887743 3444347778888888
Q ss_pred cCCHHHHHHHHHHhcccccCC------------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 009850 222 QGRIGEAKETLRRVKPAVADG------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 289 (524)
Q Consensus 222 ~G~~~eA~~~~~~a~~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~ 289 (524)
.|++++|...+++. +..|+. .++.+.+....++.+++.|++...+..++++|...|++++|....+.
T Consensus 638 ~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 638 AGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred CCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 88888888888874 222221 15566667777788888888888888888888888888888877654
Q ss_pred cc
Q 009850 290 IW 291 (524)
Q Consensus 290 al 291 (524)
.-
T Consensus 717 M~ 718 (857)
T PLN03077 717 MR 718 (857)
T ss_pred HH
Confidence 43
No 107
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=3.7e-09 Score=96.70 Aligned_cols=129 Identities=13% Similarity=0.074 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-
Q 009850 96 AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE- 174 (524)
Q Consensus 96 ~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~- 174 (524)
+..+...+...++..+.+.....++.+|.++...|++++|+..|++++.+ .|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~~~~ 68 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL--------------------------EIDP 68 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------cccc
Confidence 45555555555555555544567788888888888899998888888877 333
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHH-------HcCCHHHHHHHHHHhcccccCCCc
Q 009850 175 --ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLM-------KQGRIGEAKETLRRVKPAVADGPR 244 (524)
Q Consensus 175 --~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~-------~~G~~~eA~~~~~~a~~~~~~~~~ 244 (524)
.+.++.++|.++...|++++|+..|++++.++|.+.. +.++|.++. .+|++++|+..+.+
T Consensus 69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~---------- 138 (168)
T CHL00033 69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ---------- 138 (168)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH----------
Confidence 3458889999999999999999999999999888877 778888887 78888888888874
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q 009850 245 GVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 245 ~~~~A~~~~~~al~~~p~~~ 264 (524)
++..|++++...|...
T Consensus 139 ----a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 139 ----AAEYWKQAIALAPGNY 154 (168)
T ss_pred ----HHHHHHHHHHhCcccH
Confidence 6778888999988654
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.3e-08 Score=93.53 Aligned_cols=192 Identities=16% Similarity=0.084 Sum_probs=164.1
Q ss_pred cCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCCh
Q 009850 59 DKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRL 132 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~ 132 (524)
..+.++-++++...+.. .++....+-....+....|+.+-|..++++.....|.+. .+....|..+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--RVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhch
Confidence 34566666666666543 444455566777888889999999999999999999887 6667778889999999
Q ss_pred HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-
Q 009850 133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK- 211 (524)
Q Consensus 133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~- 211 (524)
++|+++|+..++- +|.+..++-..-.+...+|+.-+||+.+..-++..+.+.+
T Consensus 103 ~~A~e~y~~lL~d--------------------------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EA 156 (289)
T KOG3060|consen 103 KEAIEYYESLLED--------------------------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEA 156 (289)
T ss_pred hhHHHHHHHHhcc--------------------------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHH
Confidence 9999999999988 8998888888778888899999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHh
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSS 288 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~eAi~~~~ 288 (524)
|..++.+|...|+|++|.-+|+ +.+-..|.++..+..+|.+++-+|. +.-|..+|.
T Consensus 157 W~eLaeiY~~~~~f~kA~fClE---------------------E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLE---------------------ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHH---------------------HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999 7788889999999999998887775 467888999
Q ss_pred hcccCCCCCCC
Q 009850 289 SIWQPQPCKDH 299 (524)
Q Consensus 289 ~al~~~P~~~~ 299 (524)
++++++|.+..
T Consensus 216 ~alkl~~~~~r 226 (289)
T KOG3060|consen 216 RALKLNPKNLR 226 (289)
T ss_pred HHHHhChHhHH
Confidence 99999995444
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=1.5e-08 Score=105.71 Aligned_cols=233 Identities=12% Similarity=0.080 Sum_probs=189.1
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+...|...++....|..+...|+-++|..+.+.++..++....+|+.+|.+++...+|++|+++|+.|+.+.|++. .
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--q 110 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--Q 110 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--H
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
++.-++.+..++++++.....-.+.+++ .|..-..|...+..+.-.|++..|..
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLql--------------------------~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQL--------------------------RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHh--------------------------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999999999888888888 78888889999999999999999998
Q ss_pred HHHHHHhhC---CCcHH------HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-------------CcCHHHHHHHHHH
Q 009850 198 AYRRALSIA---PDNNK------MCNLGICLMKQGRIGEAKETLRRVKPAVADG-------------PRGVDSHLKAYER 255 (524)
Q Consensus 198 ~~~~Al~l~---P~~~~------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-------------~~~~~~A~~~~~~ 255 (524)
..+.-.+.. |+... ......+..+.|.+++|.+.+....+...+. .+.+++|...|..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 888777655 33322 2345666778888888888887753333222 2678889999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHhhcccCCCCCC
Q 009850 256 AQQMLKDLESEMMNKGGDRVEQSRLFDAF-LGSSSIWQPQPCKD 298 (524)
Q Consensus 256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi-~~~~~al~~~P~~~ 298 (524)
.+...|++...+..+-.++..-.+.-+++ ..|....+.-|...
T Consensus 245 Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 245 LLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred HHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 99999999988887777765333444555 55666665555443
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=3.7e-08 Score=95.43 Aligned_cols=181 Identities=9% Similarity=-0.047 Sum_probs=140.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSAL---KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~---~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~ 120 (524)
.+..++..|..++..|++++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++. ..+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 566788999999999999999999999999999876654 89999999999999999999999999998743 34667
Q ss_pred HHHHHHHHcC---------------C---hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850 121 ILLDLYKRCG---------------R---LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182 (524)
Q Consensus 121 ~lg~~~~~~g---------------~---~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L 182 (524)
.+|.++...+ + ..+|+..|++.++..|.+..... +......+ .-.-+.--+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~-----A~~rl~~l----~~~la~~e~~i 181 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD-----ATKRLVFL----KDRLAKYELSV 181 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH-----HHHHHHHH----HHHHHHHHHHH
Confidence 7776654443 1 35678889998888765433221 10000000 01112234578
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
|..|.+.|.|..|+.-++.+++.-|+.+. ++.++.+|..+|..++|..+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999999999998754 78899999999999999887764
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.07 E-value=3.6e-10 Score=111.61 Aligned_cols=208 Identities=18% Similarity=0.149 Sum_probs=141.5
Q ss_pred chhhhhhhHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHH------HHHcCCCcHHHHHHHHHHHHHcCCH
Q 009850 28 VSRTRSDSFHAIHKVPVG-----DTPYVRAKNVQLVDKDPEKAIPLFWA------AINAGDRVDSALKDMAIVMKQQNRA 96 (524)
Q Consensus 28 ~l~~~~~~~~~~~~~p~~-----~~~~~~lg~~~~~~g~~~~Ai~~~~~------al~~~p~~~~a~~~La~~~~~~g~~ 96 (524)
..+.-...|++....+.. ...|..||+.|+..++|++|+++-.. .+.-.-..+.+--+||.++..+|.|
T Consensus 32 dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~f 111 (639)
T KOG1130|consen 32 DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAF 111 (639)
T ss_pred chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhccc
Confidence 344455556666555543 34688999999999999999987543 3334656667778899999999999
Q ss_pred HHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHh------
Q 009850 97 EEAIEAIKSLRSRCS----DQAQESLDNILLDLYKRCGR--------------------LDDQIALLKHKLYLI------ 146 (524)
Q Consensus 97 ~eAi~~~~~al~~~p----~~~~~~l~~~lg~~~~~~g~--------------------~~eA~~~~~~al~l~------ 146 (524)
++|+.+..+-+.+.. .-....+++.+|.+|...|+ ++.|.++|..-+++.
T Consensus 112 deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr 191 (639)
T KOG1130|consen 112 DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR 191 (639)
T ss_pred chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999988887655443 22334677888888877665 456788888777664
Q ss_pred --------hccHhhhc-ccHHHHHHH-hHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC
Q 009850 147 --------QQGLAFNG-KRTKTARSQ-GKKFQVSVEQ----EATRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PD 208 (524)
Q Consensus 147 --------~~~~~~~~-~~~~~a~~~-~~~~~~~~~p----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~ 208 (524)
+.+..+.- +.+..+... ...+.+...- ..-.++.++|+++.-.|+++.|+++|+..+.+. ..
T Consensus 192 ~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r 271 (639)
T KOG1130|consen 192 LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR 271 (639)
T ss_pred HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence 11111111 222322222 2222222221 124689999999999999999999999977653 22
Q ss_pred cHH---HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 209 NNK---MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 209 ~~~---~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
... .|.||..|.-+.+++.||.++++-
T Consensus 272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222 788999999999999999999884
No 112
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=3.2e-08 Score=93.45 Aligned_cols=176 Identities=16% Similarity=0.089 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~ 120 (524)
.++.++..|...+..|+|.+|+..|++++...|. ...+.+.+|.+++..|++++|+..+++.+..+|+++. ..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4567899999999999999999999999998665 5678999999999999999999999999999997643 35666
Q ss_pred HHHHHHHHc-----------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850 121 ILLDLYKRC-----------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 121 ~lg~~~~~~-----------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
.+|.++... +...+|+..|+..+...|.+..... +......+ ...-..--+.+|..|++.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~-----A~~~l~~l----~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE-----AKKRLAEL----RNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH-----HHHHHHHH----HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH-----HHHHHHHH----HHHHHHHHHHHHHHHHHc
Confidence 677765443 3345788889988888655443221 10000000 001123346789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHH
Q 009850 190 NNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAK 229 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~ 229 (524)
|.|..|+..|+.+++..|+... +..++.+|.++|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999999866 788999999999988554
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.05 E-value=1.6e-08 Score=112.25 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=122.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-------------------HHHHHHHHHHHHcCCHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-------------------SALKDMAIVMKQQNRAEE 98 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-------------------~a~~~La~~~~~~g~~~e 98 (524)
.+...|.....|+.+|.+++..+++.+|... .++...+.+. .+++.||.||.++|++++
T Consensus 57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 4456788889999999999999988888776 6666655555 899999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH-HhHHHHHhcCCCc--
Q 009850 99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS-QGKKFQVSVEQEA-- 175 (524)
Q Consensus 99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~-~~~~~~~~~~p~~-- 175 (524)
|...|+++++.+|+++ .+.+.+|..|... +.++|++++.+|+...-. .+.+..+.. ..+. ...+|++
T Consensus 135 a~~~yer~L~~D~~n~--~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~-----~kq~~~~~e~W~k~--~~~~~~d~d 204 (906)
T PRK14720 135 LKGVWERLVKADRDNP--EIVKKLATSYEEE-DKEKAITYLKKAIYRFIK-----KKQYVGIEEIWSKL--VHYNSDDFD 204 (906)
T ss_pred HHHHHHHHHhcCcccH--HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh-----hhcchHHHHHHHHH--HhcCcccch
Confidence 9999999999999998 7889999999988 999999999999987310 111111111 0000 0112222
Q ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHH
Q 009850 176 ------------------TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLM 220 (524)
Q Consensus 176 ------------------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~ 220 (524)
...+.-+=..|...++|++++.+++.+|+++|++.. ...++.||.
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 233333335666666777777777777777777666 666666665
No 114
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.05 E-value=7.4e-09 Score=110.63 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=116.0
Q ss_pred cCCCChHHH--HHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 009850 41 KVPVGDTPY--VRAKNVQLVDKD---PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN--------RAEEAIEAIKSLR 107 (524)
Q Consensus 41 ~~p~~~~~~--~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g--------~~~eAi~~~~~al 107 (524)
..|.+.++| +..|..++..++ +.+|+.+|+++++++|+++.++-.++.++.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345555555 677877777665 789999999999999999999999888876642 2445666666666
Q ss_pred Hh--CCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850 108 SR--CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA 185 (524)
Q Consensus 108 ~~--~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~ 185 (524)
.+ +|.++ .++..+|..+...|++++|...+++++.+ +| +..+|..+|.+
T Consensus 412 al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------------------------~p-s~~a~~~lG~~ 462 (517)
T PRK10153 412 ALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDL--------------------------EM-SWLNYVLLGKV 462 (517)
T ss_pred hcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------------CC-CHHHHHHHHHH
Confidence 64 45555 67777888888899999999999999999 78 47899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 186 LMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 186 ~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+...|++++|++.|++|+.++|.++.
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999987
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=1.2e-08 Score=93.73 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=88.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC---cHHHHHHH
Q 009850 106 LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE---ATRLLGNL 182 (524)
Q Consensus 106 al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~---~~~a~~~L 182 (524)
....+++......++.+|..+...|++++|+.+|++++.. .|+ ...++.++
T Consensus 25 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~~~~~~~~~~~~~l 78 (172)
T PRK02603 25 ILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL--------------------------EEDPNDRSYILYNM 78 (172)
T ss_pred HcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------hhccchHHHHHHHH
Confidence 3333333333456677788888888888888888888776 222 34678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK 261 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p 261 (524)
|.++...|++++|+.+|++++...|++.. +..+|.++...|+...+...++.+.. .+..|++.+++++...|
T Consensus 79 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~-------~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 79 GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA-------LFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH-------HHHHHHHHHHHHHhhCc
Confidence 88888888888888888888888888877 77888888887776666555554432 13456667777777777
Q ss_pred CC
Q 009850 262 DL 263 (524)
Q Consensus 262 ~~ 263 (524)
+.
T Consensus 152 ~~ 153 (172)
T PRK02603 152 NN 153 (172)
T ss_pred hh
Confidence 65
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.04 E-value=7.2e-09 Score=88.19 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNI 121 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~ 121 (524)
++.++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+.+|++++..+|++.. ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999998876 578999999999999999999999999999987532 356788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+|.++...|++++|+..+++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999999999999999999998
No 117
>PLN03077 Protein ECB2; Provisional
Probab=99.04 E-value=4e-08 Score=112.85 Aligned_cols=254 Identities=9% Similarity=0.036 Sum_probs=149.2
Q ss_pred cchhhhhhhHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 27 GVSRTRSDSFHAIHKV--PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAI 103 (524)
Q Consensus 27 ~~l~~~~~~~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~ 103 (524)
+....+...|...... ..+...|..+-..+...|++++|.+.+..+++... .+..++..|...|.+.|++++|.+.|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555544333 23445677777788999999999999999998753 35677889999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-hccHhhhc--------ccHHHHHHH-hHHHHHhcCC
Q 009850 104 KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI-QQGLAFNG--------KRTKTARSQ-GKKFQVSVEQ 173 (524)
Q Consensus 104 ~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~-~~~~~~~~--------~~~~~a~~~-~~~~~~~~~p 173 (524)
++... ++. ..|+.+...|...|++++|+..|++++... +....+.. ...+..... .........
T Consensus 448 ~~m~~--~d~---vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~- 521 (857)
T PLN03077 448 HNIPE--KDV---ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG- 521 (857)
T ss_pred HhCCC--CCe---eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC-
Confidence 98643 232 466788888999999999999999987432 11111100 111111111 111111111
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhccc--ccCCC--------
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPA--VADGP-------- 243 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~--~~~~~-------- 243 (524)
.+..+++.|-..|.+.|++++|...|+.. .|+...|..+...|.+.|+.++|+..|++.... .|+..
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 22334445555556666666666665554 232222555666666666666666666554221 12211
Q ss_pred ----cCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850 244 ----RGVDSHLKAYERAQQM---LKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 290 (524)
Q Consensus 244 ----~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~a 290 (524)
|..+++.+.|+..... .|+ ...|..+...+.+.|++++|...++..
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4455555555555422 222 234555566666666666666665554
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.1e-08 Score=97.58 Aligned_cols=229 Identities=13% Similarity=0.048 Sum_probs=159.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ 135 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA 135 (524)
+++..+|..||+++..-.+.+|.+...+..||.||+...+|..|..+|++.-.+.|....+.++. ++.++..+.+.+|
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~--AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ--AQSLYKACIYADA 97 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH--HHHHHHhcccHHH
Confidence 37888999999999999999999999999999999999999999999999999999887555544 6678889999999
Q ss_pred HHHHHHHHHHhhccHhhhcccHHHHHHHhH------HHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 136 IALLKHKLYLIQQGLAFNGKRTKTARSQGK------KFQVSVEQ--EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~------~~~~~~~p--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
+.......... .+.-..-..+++..+.. ...+..-| ++++...+.|.++++.|+|++|++-|+.|++...
T Consensus 98 LrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 98 LRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 88776543210 00000001111111110 01122234 5688999999999999999999999999999999
Q ss_pred CcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc----ccCCC-cCHHHH--HHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Q 009850 208 DNNK-MCNLGICLMKQGRIGEAKETLRRVKPA----VADGP-RGVDSH--LKAYERAQQML-KDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~----~~~~~-~~~~~A--~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 278 (524)
-++- -++++.|+.+.|+++.|+.+...+... +|+-. |..-+. .......+.+. ....++....+-++.+.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 8888 899999999999999999998876432 22211 110000 00000000000 011234445567888999
Q ss_pred CHHHHHHHHh
Q 009850 279 RLFDAFLGSS 288 (524)
Q Consensus 279 ~~~eAi~~~~ 288 (524)
+++.|.+.+.
T Consensus 256 n~eAA~eaLt 265 (459)
T KOG4340|consen 256 NYEAAQEALT 265 (459)
T ss_pred cHHHHHHHhh
Confidence 9988877654
No 119
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=9e-09 Score=99.39 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC---ChHHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG---RLDDQIA 137 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g---~~~eA~~ 137 (524)
..+.-+.-++.-+..+|++.+-|..||.+|+.+|+++.|...|.+++++.|+++ .++..+|.++..+. ...++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCcccHHHHH
Confidence 366777788888888999999999999999999999999999999999999998 55566666654432 3577888
Q ss_pred HHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 138 LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 138 ~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.|++++.+ +|.+..+++.||..++..|+|.+|+..++..+...|.+..
T Consensus 215 ll~~al~~--------------------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 215 LLRQALAL--------------------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHhc--------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999988 8999999999999999999999999999999998887765
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=1.2e-08 Score=93.19 Aligned_cols=127 Identities=12% Similarity=0.084 Sum_probs=93.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHH
Q 009850 58 VDKDPEKAIPLFWAAINAGDRV--DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~e 134 (524)
..+.+..+...+...++.++.. ..+++.+|.++...|++++|+..|++++.+.|+.. ...++..+|.+|...|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 3344566666665555555444 56678888888888888888888888888876532 12467788888888888888
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHH
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM-------QQNNYI-------EAEDAYR 200 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~-------~~g~~~-------eAi~~~~ 200 (524)
|+..|++++.+ +|.....+.++|.++. ..|+++ +|+.+|+
T Consensus 91 A~~~~~~Al~~--------------------------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 91 ALEYYFQALER--------------------------NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHHh--------------------------CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 88888888887 6777777777777777 677766 6666666
Q ss_pred HHHhhCCCcH
Q 009850 201 RALSIAPDNN 210 (524)
Q Consensus 201 ~Al~l~P~~~ 210 (524)
+++..+|.+.
T Consensus 145 ~a~~~~p~~~ 154 (168)
T CHL00033 145 QAIALAPGNY 154 (168)
T ss_pred HHHHhCcccH
Confidence 7777787654
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=1.1e-08 Score=93.83 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
...+++.+|.++...|++++|+.+|++++...|+... ..++..+|.++...|++++|+..|++++..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------ 101 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------------ 101 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 3344455555555555555555555555554443211 134445555555555555555555555554
Q ss_pred HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCc
Q 009850 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN--------------YIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~--------------~~eAi~~~~~Al~l~P~~ 209 (524)
.|++...+..+|.++...|+ +++|++++++++..+|++
T Consensus 102 --------------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 --------------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred --------------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 45555555555555555444 577778888888878776
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.00 E-value=1e-07 Score=92.31 Aligned_cols=171 Identities=12% Similarity=0.029 Sum_probs=133.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 78 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 78 ~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
..+..++..|..+...|+|++|+..|++++...|..+. ......+|.+|.+.+++++|+..|++.++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-------- 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------- 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--------
Confidence 46777889999999999999999999999999998754 345678899999999999999999999999433
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCcHH-------
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN---------------N---YIEAEDAYRRALSIAPDNNK------- 211 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g---------------~---~~eAi~~~~~Al~l~P~~~~------- 211 (524)
+|+.+.+++.+|.++...+ + ..+|+..|++.+...|+..-
T Consensus 102 ---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 102 ---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred ---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 4455789999998875554 1 35788999999999998721
Q ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 009850 212 -----------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 280 (524)
Q Consensus 212 -----------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 280 (524)
-...|..|.+.|.|..|+.-++.++..+|+.. ...++++.++..|..+|..
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~------------------~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ------------------ATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc------------------hHHHHHHHHHHHHHHcCCh
Confidence 23456667777777777777775554444432 2346788899999999999
Q ss_pred HHHHHHHhh
Q 009850 281 FDAFLGSSS 289 (524)
Q Consensus 281 ~eAi~~~~~ 289 (524)
++|......
T Consensus 229 ~~a~~~~~~ 237 (243)
T PRK10866 229 AQADKVAKI 237 (243)
T ss_pred HHHHHHHHH
Confidence 999876543
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.99 E-value=2.2e-09 Score=82.50 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p 111 (524)
.+..|+.+|.+++..|++++|+.+|.++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35679999999999999999999999999999999999999999999999 79999999999999987
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.99 E-value=1.3e-08 Score=86.70 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
++.++.+|..+...|++++|+..|.+++..+|++.. ...++.+|.++...|++++|+..|++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------- 68 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK------------- 68 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------------
Confidence 457888999999999999999999999998887532 256678899999999999999999999887
Q ss_pred HHHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 159 TARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.|++ +.++..+|.++...|++++|+.+|++++...|++..
T Consensus 69 -------------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 69 -------------YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred -------------CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5553 678899999999999999999999999999998765
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=3.5e-08 Score=87.92 Aligned_cols=128 Identities=22% Similarity=0.146 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLD 124 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~ 124 (524)
.|......+..++...+...++..+...|+. ..+.+.+|.++...|++++|+..|+.++...|+... ..+...++.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3444455557889999988899999888887 556778899999999999999999999988765532 346667888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
++...|++++|+..++... - .+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 94 ~~~~~~~~d~Al~~L~~~~-~--------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIP-D--------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhcc-C--------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999886521 1 24446678889999999999999999998875
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.96 E-value=1.2e-07 Score=89.56 Aligned_cols=162 Identities=19% Similarity=0.157 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
.+..++..|..++..|+|.+|+..|++++...|.... ..+...+|.++...|++++|+..|++.+...|.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~--------- 74 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN--------- 74 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 5678999999999999999999999999999997533 467788999999999999999999999998433
Q ss_pred HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCcHH---------------
Q 009850 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-----------NYIEAEDAYRRALSIAPDNNK--------------- 211 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~l~P~~~~--------------- 211 (524)
+|....+++.+|.+++.+. ...+|+..|+..+...|++..
T Consensus 75 --------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 75 --------------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred --------------CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 3344678999999876653 345899999999999999811
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 009850 212 ---MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAF 284 (524)
Q Consensus 212 ---~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~eAi 284 (524)
-+.+|..|.+.|.+..|+..++.+ ++.-|+.. .++..++..|..+|....|.
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v---------------------~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYV---------------------IENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHH---------------------HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH---------------------HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 245677778888888888888754 44445443 46788888999999888554
No 127
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=8.5e-09 Score=102.37 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.....|.++...|++++|+..+.+. ++.++......+|..+++++.|.+.++.+.+.+.+.....+ ..+.+..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL--a~awv~l 176 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL--AEAWVNL 176 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH--HHHHHHH
Confidence 3456677888889999999988764 67888888899999999999999999999988887763333 3333443
Q ss_pred HcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 128 RCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 128 ~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
..| .+.+|.-.|+..... .+.++..++.++.+++.+|+|++|...+.+++..
T Consensus 177 ~~g~e~~~~A~y~f~El~~~--------------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK--------------------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC--------------------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HhCchhHHHHHHHHHHHHhc--------------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 444 699999999986544 4667889999999999999999999999999999
Q ss_pred CCCcHH-HHHHHHHHHHcCCH-HHHHHHHHHhcccccCC
Q 009850 206 APDNNK-MCNLGICLMKQGRI-GEAKETLRRVKPAVADG 242 (524)
Q Consensus 206 ~P~~~~-~~~Lg~~~~~~G~~-~eA~~~~~~a~~~~~~~ 242 (524)
+|.++. +.|++.|...+|+. +.+.+++.+....+|..
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999 99999999999998 55666777554444443
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.95 E-value=1.2e-08 Score=81.42 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+. ..+..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 455555555555566665555555555555555555555555555555555555555555555443 344455555555
Q ss_pred cCChHHHHHHHHHHHHH
Q 009850 129 CGRLDDQIALLKHKLYL 145 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l 145 (524)
.|++++|...+.+++..
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 55555555555555443
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.3e-08 Score=81.09 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=54.5
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
...|.....++.+|.++...|++++|+.+|.+++...|.+..++..+|.++...|++++|...+.+++..+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 344555567777788888888888888888888877777777777788888888888888888777777665
No 130
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=4.6e-09 Score=79.71 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999874
No 131
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=7.7e-08 Score=95.65 Aligned_cols=213 Identities=18% Similarity=0.139 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAG-----D-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQ 115 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~-----p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~ 115 (524)
.+.|...|..|-..|++++|..+|.++.... + ....++...+.+|... ++++|+.+|++++.+.-.. ..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4468889999999999999999999998752 1 2234566677777666 9999999999999875422 12
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHH
Q 009850 116 ESLDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 116 ~~l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~ 193 (524)
..+...+|.+|... |++++|+++|++++.+....- .+. ...++..+|.++...|+|+
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------------------~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------------------SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------------------HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------------------ChhhHHHHHHHHHHHHHHhCCHH
Confidence 46778899999998 999999999999998832100 111 1457889999999999999
Q ss_pred HHHHHHHHHHhhCCCc------HH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850 194 EAEDAYRRALSIAPDN------NK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 265 (524)
Q Consensus 194 eAi~~~~~Al~l~P~~------~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 265 (524)
+|+..|+++....-++ .. +...+.|++..|+...|...+++....+|.-....+- .
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~----------------~ 236 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY----------------K 236 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH----------------H
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH----------------H
Confidence 9999999998754222 22 5678889999999999999999765444332211111 1
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHhhcccCCCC
Q 009850 266 EMMNKGGDR--VEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 266 a~~~lg~~~--~~~g~~~eAi~~~~~al~~~P~ 296 (524)
....+-.++ .....+.+|+..|..+-++++=
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 111121122 1235577888888887777653
No 132
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=4.9e-08 Score=95.10 Aligned_cols=233 Identities=18% Similarity=0.099 Sum_probs=154.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVD-SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ 135 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA 135 (524)
+...||..|+..++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+...+..++ .++..|+.+++-+|.|.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHHH
Confidence 567788888888887776654433 4555678888888888888888888777444333 6777888888888888888
Q ss_pred HHHHHHHHHHhh-----ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850 136 IALLKHKLYLIQ-----QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN 210 (524)
Q Consensus 136 ~~~~~~al~l~~-----~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 210 (524)
...-.++-...- -.++..-...+....+...+ .+..+-...|+.+++..-.|++|++.|++++.-+|+..
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L-----qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL-----QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH-----hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 777665532110 00000001112222222211 12234556777788888899999999999999999888
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------cCHHH----------------HH--------
Q 009850 211 K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------RGVDS----------------HL-------- 250 (524)
Q Consensus 211 ~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------~~~~~----------------A~-------- 250 (524)
. -.+++.||.++.=++-+.+.+.-.+..+|+.. ++..+ +.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 8 67899999999999988888887777777765 11110 00
Q ss_pred --HHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 251 --KAYERAQQMLKD----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 251 --~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
+--+.+++..|. .+++..++...|..+++..+|+...+ ..+|..+.
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~ 317 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPY 317 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChH
Confidence 011234444443 45788999999999999999987655 34555554
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.90 E-value=8.2e-09 Score=79.28 Aligned_cols=63 Identities=32% Similarity=0.490 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC-CHHHHHHHHHHhcc
Q 009850 175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG-RIGEAKETLRRVKP 237 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G-~~~eA~~~~~~a~~ 237 (524)
++.+|..+|.+++..|+|++|+.+|.++++++|+++. |+++|.++..+| ++++|+..+++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5779999999999999999999999999999999999 999999999999 79999999996543
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.90 E-value=1.2e-07 Score=97.09 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=132.6
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcH
Q 009850 50 VRAKNVQLVDKD---PEKAIPLFWAAI---NAGDRVDSALKDMAIVMKQQ---------NRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 50 ~~lg~~~~~~g~---~~~Ai~~~~~al---~~~p~~~~a~~~La~~~~~~---------g~~~eAi~~~~~al~~~p~~~ 114 (524)
+.+|...+..+. .+.|+.+|.+++ .++|+.+.+|..++.|+... ....+|..+.+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 677777766654 568999999999 89999999999999998865 235688999999999999998
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850 115 QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE 194 (524)
Q Consensus 115 ~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e 194 (524)
.+...+|.++...|+++.|...|++++.+ +|+.+.+|+..|+++...|+.++
T Consensus 339 --~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------------------------~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 339 --KILAIMGLITGLSGQAKVSHILFEQAKIH--------------------------STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred --HHHHHHHHHHHhhcchhhHHHHHHHHhhc--------------------------CCccHHHHHHHHHHHHHcCCHHH
Confidence 66678888888899999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 195 AEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 195 Ai~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
|++.++++++++|.... ...+-.-.+--...++|+..|-+
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999999999998766 33333313344567888888764
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.4e-07 Score=91.92 Aligned_cols=247 Identities=14% Similarity=0.048 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCCC
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR--------------SRCSD 112 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al--------------~~~p~ 112 (524)
+.-..+|.+++..|+|++|+..|..+.+.+.-+.+.+.+||-|++-+|.|.+|...-.++- +++..
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 4556789999999999999999999999877788999999999999999999988766531 11111
Q ss_pred cHHH----------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--------cHhhhcc-cHHHHHHHhHHHHHhcCC
Q 009850 113 QAQE----------SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ--------GLAFNGK-RTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 113 ~~~~----------~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~--------~~~~~~~-~~~~a~~~~~~~~~~~~p 173 (524)
.-+. .-...|+.+++..-.|.+|+..|++++.-++. .+++... .+........- -+..-|
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v-YL~q~p 216 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV-YLRQFP 216 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH-HHHhCC
Confidence 1000 11124555566667789999999998865422 2233332 22222222221 133368
Q ss_pred CcHHHHHHHHHHHHHc--CCHHHH----------------HHHHHH----------HHhhCCCc----HH-HHHHHHHHH
Q 009850 174 EATRLLGNLGWALMQQ--NNYIEA----------------EDAYRR----------ALSIAPDN----NK-MCNLGICLM 220 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~--g~~~eA----------------i~~~~~----------Al~l~P~~----~~-~~~Lg~~~~ 220 (524)
+++.+.+..+..+++. |+..++ ...++. |++.-|.- +. ..||...|.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL 296 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL 296 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec
Confidence 8887877777766654 322221 111111 22222322 33 678888888
Q ss_pred HcCCHHHHHHHHHHhcccccCCC-----------------------------------------c------------CHH
Q 009850 221 KQGRIGEAKETLRRVKPAVADGP-----------------------------------------R------------GVD 247 (524)
Q Consensus 221 ~~G~~~eA~~~~~~a~~~~~~~~-----------------------------------------~------------~~~ 247 (524)
++|+..+|+..+....|..|..+ | .++
T Consensus 297 ~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 297 NQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred ccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 89999999888887655554432 1 112
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 248 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
..+..+.......-++....++++..+...|.+.+|.+.|-++-..+
T Consensus 377 dVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh
Confidence 22333333344445556677888999999999999988887765544
No 136
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.2e-07 Score=92.47 Aligned_cols=197 Identities=19% Similarity=0.117 Sum_probs=135.2
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+...|...++...--.+++..++|++|+...+.-....-.+ ...+..+.|+++++..++|+..++ ..++.+. .
T Consensus 38 il~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~--~ 111 (652)
T KOG2376|consen 38 ILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD--K 111 (652)
T ss_pred HHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccch--H
Confidence 345567888888888889999999999995444332222222 222689999999999999999999 3344443 4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc--ccHHHH-HHHhH-HHHHhcCCC-cHHHHHHHHHHHHHcCCH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG--KRTKTA-RSQGK-KFQVSVEQE-ATRLLGNLGWALMQQNNY 192 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~--~~~~~a-~~~~~-~~~~~~~p~-~~~a~~~Lg~~~~~~g~~ 192 (524)
+....+++++++|+|++|+..|+..++-......... .....+ ....+ .-.....|. +-+.++|.+.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 6677899999999999999999998765322111111 111111 11110 011122344 467899999999999999
Q ss_pred HHHHHHHHHHHhhC-------CCc--------HH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 193 IEAEDAYRRALSIA-------PDN--------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 193 ~eAi~~~~~Al~l~-------P~~--------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
.+|++.++.|+.+. ..+ .. ...|+.++..+|+.++|...|...+...+
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 99999999995432 111 11 56799999999999999999988754443
No 137
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=5.9e-07 Score=103.90 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-----DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD----QAQESL 118 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~l 118 (524)
....+|.++...|++++|...+++++...+.. ..++..+|.++...|++++|...+++++..... ......
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34457888899999999999999999854432 235677899999999999999999999876542 122345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
...++.++...|++++|...+++++.+
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 567889999999999999999999876
No 138
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.87 E-value=1.5e-06 Score=80.42 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAIN--AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL 123 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg 123 (524)
...+...+..+...+++..++..+...+. ..+.....+..++..+...+++..++..+..++...+... ......+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD--LAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc--hHHHHHH
Confidence 46678888999999999999999999997 6888889999999999999999999999999999877653 2223334
Q ss_pred H-HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 124 D-LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ---EATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 124 ~-~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p---~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
. ++...|+++.|...|.+++.. +| .....+..++..+...+++++|+..+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 137 LGALYELGDYEEALELYEKALEL--------------------------DPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 4 788999999999999999765 44 34566677777788899999999999
Q ss_pred HHHHhhCCC-cHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850 200 RRALSIAPD-NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 200 ~~Al~l~P~-~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 277 (524)
.+++...+. ... +..++.++...+++.+|+..+. .++...|.....+..++..+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE---------------------KALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHH---------------------HHHhhCcccHHHHhhHHHHHHHc
Confidence 999999998 566 8899999999998888888888 56666666666778888877777
Q ss_pred CCHHHHHHHHhhcccCCCC
Q 009850 278 SRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 278 g~~~eAi~~~~~al~~~P~ 296 (524)
+.+.++...+..++...|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 8899999999999988886
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=1.1e-08 Score=82.12 Aligned_cols=80 Identities=29% Similarity=0.439 Sum_probs=70.3
Q ss_pred cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
.|++++|+..|++++.. +|. +..+++.+|.+|++.|+|++|+..+++ +..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~--------------------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~ 54 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--------------------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD 54 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--------------------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH
T ss_pred CccHHHHHHHHHHHHHH--------------------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC
Confidence 68999999999999998 563 567888899999999999999999999 8888
Q ss_pred CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 207 PDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 207 P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+.+.. ++.+|.|+.++|++++|+..|+++
T Consensus 55 ~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 55 PSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 98877 778899999999999999999864
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.85 E-value=1.1e-08 Score=82.06 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=70.9
Q ss_pred HcCChHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850 58 VDKDPEKAIPLFWAAINAGDR--VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ 135 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~~p~--~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA 135 (524)
.+|+++.|+..|++++...|. +...++.+|.|+++.|+|++|+..+++ ...++.+. .....+|.++..+|++++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~--~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP--DIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH--HHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHHHhCCHHHH
Confidence 368999999999999999984 567788899999999999999999999 77777775 5667779999999999999
Q ss_pred HHHHHHH
Q 009850 136 IALLKHK 142 (524)
Q Consensus 136 ~~~~~~a 142 (524)
+.+|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 141
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=4.8e-07 Score=96.36 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~ 154 (524)
+.+++.....++...|++++|+++++.....-.|.. .+.-..|.++..+|++++|...|+..|..++.+..+..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~--~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKL--AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 457788889999999999999999998777777765 66778899999999999999999999999765555443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=3.1e-07 Score=81.77 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=98.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850 91 KQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169 (524)
Q Consensus 91 ~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~ 169 (524)
...++...+...++..+..+|+.++ ......++.++...|++++|...|+.++..
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------------------------ 77 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------------------------ 77 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------------
Confidence 3578999999999999999998843 356677899999999999999999999886
Q ss_pred hcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 170 SVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 170 ~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.|+. ..+...|+.++...|+|++|+..++.. .-.+-.+. +..+|.++...|++++|+..|+++
T Consensus 78 --~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 78 --APDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred --CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3333 458889999999999999999999763 22222333 778999999999999999999975
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.3e-07 Score=89.73 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc
Q 009850 96 AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA 175 (524)
Q Consensus 96 ~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~ 175 (524)
.+.-+.-++.-+..+|+++ .-|..||.+|+..|+++.|...|.+++++ .|++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------------------------~g~n 189 (287)
T COG4235 138 MEALIARLETHLQQNPGDA--EGWDLLGRAYMALGRASDALLAYRNALRL--------------------------AGDN 189 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcchhHHHHHHHHHHHh--------------------------CCCC
Confidence 5566777788899999998 78899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 176 TRLLGNLGWALMQQN---NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
++.+..+|.+++.+. ...++...|++++..+|.+.. .+.||..++..|+|.+|+..++..+...|.+.
T Consensus 190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999988765 468999999999999999999 99999999999999999999997766555443
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.82 E-value=1.7e-07 Score=100.29 Aligned_cols=142 Identities=13% Similarity=0.053 Sum_probs=114.4
Q ss_pred CCCcHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 110 CSDQAQESLDNILLDLYKRCGR---LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 110 ~p~~~~~~l~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
.|.+....-.+..|.-|...+. ...|+.+|++++++ +|+++.++-.++.++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------------------------dP~~a~a~A~la~~~ 386 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------------------------EPDFTYAQAEKALAD 386 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHH
Confidence 3455433334455655655544 77999999999999 999999999988887
Q ss_pred HHcC--------CHHHHHHHHHHHHhh--CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Q 009850 187 MQQN--------NYIEAEDAYRRALSI--APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER 255 (524)
Q Consensus 187 ~~~g--------~~~eAi~~~~~Al~l--~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~ 255 (524)
.... +...+.....+++.+ +|.++. +..+|..+...|++++|...++ +
T Consensus 387 ~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~---------------------r 445 (517)
T PRK10153 387 IVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAIN---------------------K 445 (517)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHH---------------------H
Confidence 6542 345666777776664 666666 7888999999999999999999 7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
++.+.|+ ..+|..+|.++...|++++|+..|++|++++|..+.
T Consensus 446 Al~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 446 AIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 8888884 789999999999999999999999999999999987
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.82 E-value=1.3e-07 Score=93.90 Aligned_cols=190 Identities=16% Similarity=0.115 Sum_probs=133.3
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc--HHHHHHHHHHHHHHHcCChHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS--DQ--AQESLDNILLDLYKRCGRLDDQI 136 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p--~~--~~~~l~~~lg~~~~~~g~~~eA~ 136 (524)
++++|...|.+| |.+|...|++++|...|.++....- ++ .....+...+.+|... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666655 7889999999999999999876543 22 1134555666666555 999999
Q ss_pred HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CcH--
Q 009850 137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAP--DNN-- 210 (524)
Q Consensus 137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P--~~~-- 210 (524)
.+|++++.+.... .++. -+.++..+|.+|... |++++|+.+|++|+.+.. +..
T Consensus 95 ~~~~~A~~~y~~~---------------------G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 95 ECYEKAIEIYREA---------------------GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHHHC---------------------T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 9999999873110 0111 256889999999999 999999999999998632 221
Q ss_pred -H--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 211 -K--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 287 (524)
Q Consensus 211 -~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~ 287 (524)
. +..+|.++.++|+|++|+..|+++.......... .......++..+.+++..|++-.|...+
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~--------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL--------------KYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT--------------GHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc--------------chhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 6789999999999999999999763322211100 0011234567788999999999999999
Q ss_pred hhcccCCCCCCCc
Q 009850 288 SSIWQPQPCKDHI 300 (524)
Q Consensus 288 ~~al~~~P~~~~~ 300 (524)
+.....+|....+
T Consensus 220 ~~~~~~~~~F~~s 232 (282)
T PF14938_consen 220 ERYCSQDPSFASS 232 (282)
T ss_dssp HHHGTTSTTSTTS
T ss_pred HHHHhhCCCCCCc
Confidence 9999999887663
No 146
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.80 E-value=1.9e-06 Score=85.71 Aligned_cols=196 Identities=16% Similarity=0.121 Sum_probs=149.7
Q ss_pred HHHHhcCCCChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 009850 36 FHAIHKVPVGDT--PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD- 112 (524)
Q Consensus 36 ~~~~~~~p~~~~--~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~- 112 (524)
+..+...+.++. ....++......|++..|.....++++..|.++..+.....+|...|++.+...++.+..+..--
T Consensus 141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 334444533333 45677888999999999999999999999999999999999999999999888877765443210
Q ss_pred c-------------------------H--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH-h-
Q 009850 113 Q-------------------------A--------------QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL-A- 151 (524)
Q Consensus 113 ~-------------------------~--------------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~-~- 151 (524)
+ . ...+...++.-+..+|+.++|.+..+++++..-... +
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~ 300 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR 300 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence 0 0 012333556667889999999999999987652211 1
Q ss_pred hhc--------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcC
Q 009850 152 FNG--------KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQG 223 (524)
Q Consensus 152 ~~~--------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G 223 (524)
+.. ...+.+... ....|+++..+..||..+++.+.|.+|..+|+.+++..|+..+|..+|.++.++|
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~-----l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKW-----LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred HHhhcCCCCchHHHHHHHHH-----HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 110 111122211 3447999999999999999999999999999999999999988999999999999
Q ss_pred CHHHHHHHHHHhc
Q 009850 224 RIGEAKETLRRVK 236 (524)
Q Consensus 224 ~~~eA~~~~~~a~ 236 (524)
+..+|.++++.++
T Consensus 376 ~~~~A~~~r~e~L 388 (400)
T COG3071 376 EPEEAEQVRREAL 388 (400)
T ss_pred ChHHHHHHHHHHH
Confidence 9999999999763
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.80 E-value=2e-08 Score=76.15 Aligned_cols=64 Identities=33% Similarity=0.402 Sum_probs=52.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
.+|..+...|++++|+..|+++++. +|+++.+++.+|.++..+|++++|+.+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------------------------DPDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------------------------STTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4577788888888888888888877 78888888888888888888888888888
Q ss_pred HHHhhCCCcH
Q 009850 201 RALSIAPDNN 210 (524)
Q Consensus 201 ~Al~l~P~~~ 210 (524)
++++.+|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 8888888764
No 148
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.80 E-value=2.9e-09 Score=103.07 Aligned_cols=229 Identities=9% Similarity=-0.065 Sum_probs=158.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
.-..|+.|+.+|.|++||.||.+++..+|.++..+.+.|.+|+++.+|..|...+..++.++.... .+|...+..-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--KAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--HHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999987665 677777888889
Q ss_pred cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH---------HHHHHHHHHcCCHHHHHHHH
Q 009850 129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL---------GNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~---------~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+|...+|-+-++.+|++.+....+.........-..+.+...--|+...+. -.-|..+...|.++-++.+|
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 999999999999999997654443321111111111111111123322221 22356666777777777777
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 278 (524)
-+-+..+.++.. ..+ +..|.+.-++++|+...-+ +.-..|.........|...--.|
T Consensus 258 ~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~---------------------~~~~~~s~~~~~s~~~~A~T~~~ 315 (536)
T KOG4648|consen 258 VSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVK---------------------KTNPKPTPMPDTSGPPKAETIAK 315 (536)
T ss_pred eccccccCccccCccc-HHHHHHHhhcchhHHHHHH---------------------hcCCCCCcCcccCCCchhHHHHh
Confidence 776666555555 333 6666677777777766664 33333333333333444444556
Q ss_pred CHHHHHHHHhhcccCCCCCCCcc
Q 009850 279 RLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 279 ~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...++-..++.++.+.|.+....
T Consensus 316 ~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 316 TSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred hhhhcCcchhheeeeccccccch
Confidence 67777788888888888876644
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=9.9e-08 Score=84.71 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
++.-+..+..|.-++..|++++|...|+-+...+|.++ ..+..||.++..+++|++|+..|..+..+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l----------- 100 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKKQFQKACDLYAVAFTL----------- 100 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 33444455555555555555555555555555555554 34455555555555555555555555544
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+++++...+..|.|++.+|+.+.|..+|..++.
T Consensus 101 ---------------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 ---------------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---------------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555
No 150
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=5.2e-08 Score=96.76 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=60.0
Q ss_pred CCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850 172 EQEATRLLGNLGWALMQQN--NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 248 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g--~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~ 248 (524)
+.+..-+....+|+.+..| .+.+|...|++.....+..+. +..++.|++.+|+|++|...++
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~--------------- 225 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE--------------- 225 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH---------------
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH---------------
Confidence 4444444445555555555 466777777776655555555 6667777777777777776666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHhhcccCCCCCC
Q 009850 249 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD-AFLGSSSIWQPQPCKD 298 (524)
Q Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~e-Ai~~~~~al~~~P~~~ 298 (524)
+++..+|.++.++.|+..+...+|+..+ +.+.....-+.+|.++
T Consensus 226 ------~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 226 ------EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ------HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred ------HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 4455556666667777766666666633 3344444444555543
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.76 E-value=2.9e-07 Score=89.91 Aligned_cols=101 Identities=9% Similarity=-0.021 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHH
Q 009850 45 GDTPYVRAKNVQ-LVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLD 119 (524)
Q Consensus 45 ~~~~~~~lg~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~ 119 (524)
....+|..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++..+|+++. ..++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456778888876 66899999999999999999987 589999999999999999999999999999997643 4677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+.+|.++...|++++|...|+++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999988
No 152
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-07 Score=93.09 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
...-|..|++.|+|..|...|++++........+.......+.. --..++.|++.|+.++++|.+|+.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~-----------~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA-----------LKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH-----------HHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 34567788899999999999999887632211111100000000 1134889999999999999999999
Q ss_pred HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850 199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 277 (524)
+.++|.++|+|.. ++..|.++..+|+++.|+..|+ +++++.|++..+...+..+..+.
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~---------------------ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQ---------------------KALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHH---------------------HHHHhCCCcHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999 88999999999999998888777
Q ss_pred CCHHHH-HHHHhhcccCCCCC
Q 009850 278 SRLFDA-FLGSSSIWQPQPCK 297 (524)
Q Consensus 278 g~~~eA-i~~~~~al~~~P~~ 297 (524)
.++.+. ...|..++..-+..
T Consensus 339 ~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 777665 55677777665543
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=2.5e-07 Score=90.44 Aligned_cols=108 Identities=16% Similarity=0.244 Sum_probs=77.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 81 SALKDMAIVM-KQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 81 ~a~~~La~~~-~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
..++..|..+ ...|+|++|+..|+..+..+|++.+ ..+++.+|.+|+..|++++|+..|++++..++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------
Confidence 5566666655 4567888888888888888886632 356677788888888888888888877776221
Q ss_pred HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+|..+++++.+|.++...|++++|+..|+++++..|+...
T Consensus 213 -------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 213 -------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred -------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 2334677778888888888888888888888887777653
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.72 E-value=6.8e-07 Score=76.35 Aligned_cols=99 Identities=21% Similarity=0.210 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNIL 122 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~l 122 (524)
.++|.+|.++-..|+.++|+.+|++++..... -..++..+|.++..+|++++|+..+++++...|++.. ..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46889999999999999999999999997543 3568899999999999999999999999999887321 2455566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l 145 (524)
+.++...|++++|+..+-.++.-
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888999999999998877643
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.72 E-value=8.9e-07 Score=90.70 Aligned_cols=157 Identities=10% Similarity=-0.027 Sum_probs=120.2
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhhc
Q 009850 84 KDMAIVMKQQN---RAEEAIEAIKSLR---SRCSDQAQESLDNILLDLYKRC---------GRLDDQIALLKHKLYLIQQ 148 (524)
Q Consensus 84 ~~La~~~~~~g---~~~eAi~~~~~al---~~~p~~~~~~l~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~ 148 (524)
+.+|......+ ..+.|+.+|.+++ .++|+.+ ..+..++.++... ....+|.++.++++++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a--~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--- 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT--ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--- 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---
Confidence 55666655554 4568999999999 9999886 4445555554432 2345667777777777
Q ss_pred cHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850 149 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE 227 (524)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e 227 (524)
+|.|+.++..+|.++...++++.|+..|++|+.++|+.+. |+..|.+....|+.++
T Consensus 334 -----------------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 334 -----------------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred -----------------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHhh
Q 009850 228 AKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGD-RVEQSRLFDAFLGSSS 289 (524)
Q Consensus 228 A~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~~eAi~~~~~ 289 (524)
|...++ +++++.|....+-...-++ .+--...++|+..|-+
T Consensus 391 a~~~i~---------------------~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICID---------------------KSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHH---------------------HHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999 6666777555443333333 3444567777777654
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.7e-07 Score=84.48 Aligned_cols=182 Identities=16% Similarity=0.039 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
..++..|..|-.+|-+.-|.-.|.+++.+.|+-+ .+++.+|..+...|+++.|.+.|...+++
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~--~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------------- 128 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------------- 128 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH--HHHHHHHHHHHhcccchHHHHHhhhHhcc---------------
Confidence 3344555555555555555555555555555554 45555555555555555555555555555
Q ss_pred HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHH-HHhc
Q 009850 161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETL-RRVK 236 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~-~~a~ 236 (524)
+|..--++.|.|..++.-|+|.-|.+.+.+--+.+|++|- |..+- ...-+..+|...+ +++.
T Consensus 129 -----------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 -----------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred -----------CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555554 22111 1122333443332 2222
Q ss_pred ccccCCCcCH------H--HHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 237 PAVADGPRGV------D--SHLKAYERAQQMLK-------DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 237 ~~~~~~~~~~------~--~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
....+-||-. + .-...++++.+... ...+.++.+|..+...|+.++|...|+-++..
T Consensus 195 ~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 195 KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2222222110 0 00111222222222 23467899999999999999999999877644
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.68 E-value=5.7e-07 Score=92.35 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~ 164 (524)
.|-.++...++++.|+..+++..+.+|+. ...++.++...++..+|+..+.+++..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev-----~~~LA~v~l~~~~E~~AI~ll~~aL~~------------------- 229 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV-----AVLLARVYLLMNEEVEAIRLLNEALKE------------------- 229 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH-----HHHHHHHHHhcCcHHHHHHHHHHHHHh-------------------
Confidence 45566677789999999999999999764 255788888899999999999999987
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+|.+...+...+..+...++++.|+.+.++++.+.|++.. |+.|+.||..+|++++|+..++.
T Consensus 230 -------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 230 -------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8999999999999999999999999999999999999998 99999999999999999998884
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=2.2e-07 Score=82.58 Aligned_cols=98 Identities=5% Similarity=-0.189 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
-+..+..|.-++..|++++|...|+-....+|.+.+.+..||.|+..+++|++|+..|..+..++++++ ...+..|.+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999887 445778999
Q ss_pred HHHcCChHHHHHHHHHHHHH
Q 009850 126 YKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l 145 (524)
|..+|+.+.|..+|..++..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999998874
No 159
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=5.2e-06 Score=96.12 Aligned_cols=208 Identities=12% Similarity=-0.020 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-H--H
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-A--Q 115 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-~--~ 115 (524)
.....+.+++..|++++|...+..+....+. .......+|.++...|++++|..++++++...+.. . .
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 3456777888899999999999888764221 23445567888889999999999999998865532 1 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~ 193 (524)
......+|.++...|++++|...+++++..... ..+. ...++.++|.++...|+++
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~----------------------~g~~~~~~~~~~~la~~~~~~G~~~ 548 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQ----------------------HDVYHYALWSLLQQSEILFAQGFLQ 548 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----------------------hcchHHHHHHHHHHHHHHHHCCCHH
Confidence 234567788888999999999999999876210 0111 1346788899999999999
Q ss_pred HHHHHHHHHHhhCCC-----c---HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850 194 EAEDAYRRALSIAPD-----N---NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 194 eAi~~~~~Al~l~P~-----~---~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 264 (524)
+|...+++++.+... . .. +..+|.++...|++++|...++++........ .....
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----------------~~~~~ 612 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----------------PQQQL 612 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----------------chHHH
Confidence 999999999886321 1 12 55788999999999999999997643221100 01123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 265 SEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 265 ~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
.++..+|.++...|++++|...+..+...
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46677899999999999999998888654
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.62 E-value=2.4e-05 Score=72.29 Aligned_cols=171 Identities=25% Similarity=0.287 Sum_probs=143.7
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAI-VMKQQNRAEEAIEAIKSLRSRCSD-QAQESL 118 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~-~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l 118 (524)
..+.....+...|......+++..++..+..++...+.........+. ++...|+++.|+..+.+++...|. ......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 456677788999999999999999999999999988887666666666 899999999999999999887763 222244
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
....+..+...++++.|+..+.+++.. .+. ....+..++..+...+++++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKL--------------------------NPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhh--------------------------CcccchHHHHHhhHHHHHcccHHHHHH
Confidence 455566677889999999999999988 666 68899999999999999999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
.+..++...|.... +..++..+...|.++++...+.++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999655 77788888877889999988885433
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=1.2e-06 Score=89.91 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=108.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~ 131 (524)
+-..+...++++.|+..|++..+.+|+ +...++.++...++..+|+..+.+++...|.+. .+....+..+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCC
Confidence 445556678999999999999988875 566789999999999999999999999999886 788888999999999
Q ss_pred hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
++.|+.+.++++.+ .|.+...|+.|+.+|...|+|+.|+..++.+
T Consensus 250 ~~lAL~iAk~av~l--------------------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVEL--------------------------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHh--------------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999 8999999999999999999999999887754
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.3e-06 Score=74.66 Aligned_cols=98 Identities=26% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
.+++.+|.++..+|+.++|+.+|++++....+.. ...++..+|..|..+|++++|+..+++++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------------- 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-------------- 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Confidence 5789999999999999999999999999876543 3467788999999999999999999999877
Q ss_pred HHHHhHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 160 ARSQGKKFQVSVEQE---ATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 160 a~~~~~~~~~~~~p~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
.|+ +..+...++.++...|++++|+..+-.++.
T Consensus 68 ------------~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 68 ------------FPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ------------CCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566 677888899999999999999999988875
No 163
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1e-06 Score=88.26 Aligned_cols=126 Identities=19% Similarity=0.170 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL 150 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~-------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~ 150 (524)
...|..|++.|+|..|...|++++..-... ....++.+++.+|.++++|.+|+....++|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 345666666666666666666655543210 11357788999999999999999999999999
Q ss_pred hhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHH-
Q 009850 151 AFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA- 228 (524)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA- 228 (524)
+|++..+++..|.++...|+|+.|+..|+++++++|+|.. ...+..|..+..++.+.
T Consensus 287 ---------------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 287 ---------------------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred ---------------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 77777777666655554
Q ss_pred HHHHHHh
Q 009850 229 KETLRRV 235 (524)
Q Consensus 229 ~~~~~~a 235 (524)
...|...
T Consensus 346 kk~y~~m 352 (397)
T KOG0543|consen 346 KKMYANM 352 (397)
T ss_pred HHHHHHH
Confidence 5556654
No 164
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=5.9e-05 Score=76.65 Aligned_cols=261 Identities=13% Similarity=0.056 Sum_probs=144.6
Q ss_pred hhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 34 DSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 34 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
..|.....+.....+|...-..-++.+..+.|...|++-+-..|+ ...|...+..-.+.|+..-|...|++|+..-.++
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 333333333334444444444444444455555555544444443 3444445555555555555555555555544332
Q ss_pred H-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--hhcc------------cHHHHHHHhHHH----HHhcCCC
Q 009850 114 A-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--FNGK------------RTKTARSQGKKF----QVSVEQE 174 (524)
Q Consensus 114 ~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--~~~~------------~~~~a~~~~~~~----~~~~~p~ 174 (524)
- ...+....+..-..+..++.|...|+-++...+.+.+ +..+ ..+.+....+.+ .+..+|.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1 1233334444444455555555555555554444422 0000 011111111111 2455899
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----------HHHHHHH-HHHcCCHHHHHHHHHHhcccccCCC
Q 009850 175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----------MCNLGIC-LMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----------~~~Lg~~-~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
+-++|+.+-.+....|+-+.-.+.|++|+.--|.... |.|.+.. -+...+.+.+...|+.++...|...
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 9999999988888889999999999999887665422 2222211 1345677777777777665555442
Q ss_pred --------------------------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009850 244 --------------------------------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGD 273 (524)
Q Consensus 244 --------------------------------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 273 (524)
+.++.+.+.|++-++..|.+-.+|...|..
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 344556667777777777777777777777
Q ss_pred HHHcCCHHHHHHHHhhcccCCC
Q 009850 274 RVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 274 ~~~~g~~~eAi~~~~~al~~~P 295 (524)
-..+|+.+.|...|+-|++...
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcc
Confidence 7777777777777777766543
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.58 E-value=2.1e-07 Score=71.10 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL 123 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg 123 (524)
++..|++++|+..|++++..+|++.++++.+|.+|...|++++|...+++++..+|+++ .++..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP--EYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH--HHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH--HHHHHHh
Confidence 36789999999999999999999999999999999999999999999999999999976 4545544
No 166
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=9.2e-06 Score=77.90 Aligned_cols=217 Identities=11% Similarity=-0.042 Sum_probs=154.0
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR------------- 109 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~------------- 109 (524)
|..-.....+|.+|+...+|..|..+|.+.-...|......+..+..+++.+.+.+|+.........
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455567889999999999999999999999999999999889999999999999888766543321
Q ss_pred ---C--------------CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC
Q 009850 110 ---C--------------SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172 (524)
Q Consensus 110 ---~--------------p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (524)
. |........+..|.+.++.|+++.|++-|+.+++. .
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv--------------------------s 174 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV--------------------------S 174 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh--------------------------c
Confidence 1 11001234455677777888888888888888877 5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCc-------------------------HH-HHHHHHHHHHc
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PDN-------------------------NK-MCNLGICLMKQ 222 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~-------------------------~~-~~~Lg~~~~~~ 222 (524)
.-++-+-++++.++++.|+|+.|+++..+.++.. |+. .. ++..+.++.+.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 5566788999999999999999999998887643 332 11 34457778899
Q ss_pred CCHHHHHHHHHHhcccccCCC--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850 223 GRIGEAKETLRRVKPAVADGP--------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 285 (524)
Q Consensus 223 G~~~eA~~~~~~a~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~ 285 (524)
|+++.|.+.+...-|...... ++.......++-.+++.|--.+...|+-.+|.+..-++-|-.
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 999999888876533322211 222333455556666677555666666666666555554443
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51 E-value=2.4e-05 Score=70.28 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=124.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHcCC
Q 009850 53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS-RCSDQAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~-~~p~~~~~~l~~~lg~~~~~~g~ 131 (524)
+......=|++.+.....+.+...|.. .-.+.||..+..+|++.||..+|++++. +.-+++ .+..-++......++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~--a~lLglA~Aqfa~~~ 139 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA--AMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH--HHHHHHHHHHHhhcc
Confidence 344455567777777777777777764 5578899999999999999999999876 344565 555667788889999
Q ss_pred hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
+..|...++...+. +|. .++....+|.+|...|++.+|...|+.++...|+.
T Consensus 140 ~A~a~~tLe~l~e~--------------------------~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 140 FAAAQQTLEDLMEY--------------------------NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHHHHHhhc--------------------------CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 99999999988877 333 35678889999999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 210 NKMCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 210 ~~~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
...+..+..+.++|+..+|..-+..+
T Consensus 194 ~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 194 QARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77777899999999999988877754
No 168
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.50 E-value=4.9e-06 Score=70.31 Aligned_cols=97 Identities=21% Similarity=0.112 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ESLDNILLDLY 126 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~--~~l~~~lg~~~ 126 (524)
+-.-|......|+.+.|++.|.+++.+-|..+.+|.+.+..+..+|+.++|++.+++++++..+... ...+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999999999999999875532 45667889999
Q ss_pred HHcCChHHHHHHHHHHHHH
Q 009850 127 KRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l 145 (524)
..+|+-+.|..-|+.+-++
T Consensus 126 Rl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHhCchHHHHHhHHHHHHh
Confidence 9999999999999999877
No 169
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=6.9e-07 Score=80.88 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY 253 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~ 253 (524)
-.-|+-++..|+|++|..-|..||.+.|..+. |.|.|.|+++++.++.|+..+.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcs-------------------- 158 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCS-------------------- 158 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHH--------------------
Confidence 44588899999999999999999999998754 6799999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 254 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 254 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
+++++.|.+..++..++.+|....++++|+..|.+++..+|....
T Consensus 159 -Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 159 -KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred -hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 889999999999999999999999999999999999999998664
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.46 E-value=9.8e-07 Score=68.36 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=60.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
|..+++..+++++|+.+++.++..+|+++..+..+|.++..+|++++|+..++++++..|++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 356789999999999999999999999999999999999999999999999999999999886
No 171
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.44 E-value=6.2e-05 Score=71.59 Aligned_cols=189 Identities=15% Similarity=0.098 Sum_probs=136.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~ 120 (524)
.++.++.-|...+..|++++|+..|+.+....|. ...+...++.++++.+++++|+..+++-+.++|.++. ..+.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4567899999999999999999999999988765 4577889999999999999999999999999997642 23445
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 009850 121 ILLDLYKRC--------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY 192 (524)
Q Consensus 121 ~lg~~~~~~--------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~ 192 (524)
+.|..+... .-..+|+..|+..+...|....... +......+ +-.-+.--...|..|.+.|.|
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d-----A~~~i~~~----~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD-----AKARIVKL----NDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh-----HHHHHHHH----HHHHHHHHHHHHHHHHHhcCh
Confidence 556554322 1234566777777776544332111 00000000 001122335679999999999
Q ss_pred HHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 193 IEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 193 ~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
..|+.-++++++--|+... +..+..+|..+|-.++|...-.-+....|+.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999999999998776543 7889999999999999987766444444443
No 172
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.44 E-value=3.3e-07 Score=89.05 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ 257 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al 257 (524)
+-..|+-|+++|.|++|+++|.+++..+|.++. +.|++.+|+++.+|..|...++ .++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~---------------------~Ai 158 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE---------------------AAI 158 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH---------------------HHH
Confidence 456799999999999999999999999999999 9999999999999999999999 677
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
.++..+..+|..+|.....+|+..+|-..++.++.+.|.+.+
T Consensus 159 aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 159 ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 777778888999999999999999999999999999998655
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.44 E-value=8.5e-07 Score=67.69 Aligned_cols=64 Identities=28% Similarity=0.334 Sum_probs=53.7
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
...|++++|+..|++++.. +|++..+++.+|.+|.+.|++++|...+++++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------------------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------------------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4678899999999999888 89999999999999999999999999999999999
Q ss_pred CCcHH-HHHHH
Q 009850 207 PDNNK-MCNLG 216 (524)
Q Consensus 207 P~~~~-~~~Lg 216 (524)
|+++. +..++
T Consensus 56 ~~~~~~~~l~a 66 (68)
T PF14559_consen 56 PDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHH
T ss_pred cCHHHHHHHHh
Confidence 98866 44444
No 174
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.43 E-value=1.7e-06 Score=88.61 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=65.3
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA---LKDMAIVMKQQNRAEEAIEAIKSLRSRC 110 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a---~~~La~~~~~~g~~~eAi~~~~~al~~~ 110 (524)
..|..+.+|+++|..++..|+|++|+.+|+++++++|++.++ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467788899999999999999999999999999999999865 9999999999999999999999999974
No 175
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=6.1e-05 Score=76.54 Aligned_cols=255 Identities=11% Similarity=0.043 Sum_probs=199.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+.....+...|...|.--..++++..|...|++||..+..+...|...+.+-++..+...|...+.+|+.+-|.-- .
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd--q 142 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD--Q 142 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH--H
Confidence 44444455667888888889999999999999999999999999999999999999999999999999999999764 5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc--------ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG--------KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
+|+-+..+-..+|+...|.+.|++.+...+...+... +..+-+.+....+... .| ....|...+..-.+.
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP-~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HP-KVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cc-cHHHHHHHHHHHHhc
Confidence 6666666677899999999999999887654433211 2223333333333222 34 466888899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC---------------c---CHH
Q 009850 190 NNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------------R---GVD 247 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------------~---~~~ 247 (524)
|+..-|..+|.+|+..-.++.. +...|..-..+..++.|...|+-|+...|.+- | +.+
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999999997766543 44556666778889999999999887777763 1 222
Q ss_pred HH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 248 SH-----LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 248 ~A-----~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
.+ .-.|++.+..+|-+-++|+..-.+....|+.+.-...|++|+..-|-
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 23 23578888999999999999998989999999999999999877665
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=4.5e-06 Score=79.96 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR 161 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~ 161 (524)
.|+.|.-++..|+|.+|...|..-++..|++.. .++++.||.+++.+|+|++|...|..+++-++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 566677777777777777777777777775432 356666677777777777777777776665222
Q ss_pred HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 162 SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 162 ~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.|..+++++.||.+...+|+.++|...|+++++..|+...
T Consensus 211 ----------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 211 ----------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 3444667777777777777777777777777777776654
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.41 E-value=1.6e-06 Score=67.12 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=56.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
..+|...+++++|+.++++++.+ +|+++..|..+|.++...|++++|+..|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------------------------DPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------------------------CcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 45678889999999999999988 8999999999999999999999999999999
Q ss_pred HhhCCCcHH
Q 009850 203 LSIAPDNNK 211 (524)
Q Consensus 203 l~l~P~~~~ 211 (524)
++..|+++.
T Consensus 56 l~~~p~~~~ 64 (73)
T PF13371_consen 56 LELSPDDPD 64 (73)
T ss_pred HHHCCCcHH
Confidence 999998877
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.38 E-value=1.2e-06 Score=89.77 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=63.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~ 238 (524)
+|+++.+|+++|.+|+..|+|++|+.+|+++++++|++.. |+|+|.||..+|++++|+.+|++++..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999873 999999999999999999999998664
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.4e-05 Score=73.50 Aligned_cols=95 Identities=13% Similarity=-0.111 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.++..|..|-..|-+.-|.--|.+++.+.|+-++++..||.-+...|+|+.|.+.|...++++|.+. .+..+.|..+.
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~~Y 144 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALY 144 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhccceeee
Confidence 3455555555555555555555555555555555555555555555555555555555555555543 12233333344
Q ss_pred HcCChHHHHHHHHHHHH
Q 009850 128 RCGRLDDQIALLKHKLY 144 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~ 144 (524)
--|++.-|.+-+.+-.+
T Consensus 145 Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred ecCchHhhHHHHHHHHh
Confidence 44555555554444333
No 180
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.36 E-value=1.5e-05 Score=78.31 Aligned_cols=230 Identities=10% Similarity=-0.004 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH--HH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR-----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QAQ--ES 117 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~-----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~~--~~ 117 (524)
++|.+++..+-..-++.+++.+-...+.+-.. -...+..+|.++..++.++++++.|+.+++.... ++. ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35667777777777777777777666665222 2255667888888888899999999988877542 221 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+...||.++-.+.++++|+.+..++.++... +.+.+ .. ......+++.++..+..+|+...|.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s-~~l~d-----~~----------~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNS-YGLKD-----WS----------LKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh-cCcCc-----hh----------HHHHHHHHHHHHHHHHHhcccccHHH
Confidence 6667888888888899988888888876211 00000 00 00113477899999999999999999
Q ss_pred HHHHHHhhC---CCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCH------------------------
Q 009850 198 AYRRALSIA---PDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV------------------------ 246 (524)
Q Consensus 198 ~~~~Al~l~---P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~------------------------ 246 (524)
+.+++.++. .+.+. ...+|.+|...|+.+.|..-|++|.........++
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~ 307 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICN 307 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999998764 22222 56799999999999999999999843332221111
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 247 DSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 247 ~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
-.+++.-.+.+++.... ...+..++.+|..+|.-++-...+.++-+
T Consensus 308 Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 308 CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 01233333444433222 24567778889888888877776666443
No 181
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=6.9e-05 Score=84.64 Aligned_cols=206 Identities=13% Similarity=0.082 Sum_probs=114.7
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDRVDS----ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ 115 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~~~~----a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~ 115 (524)
..|...-.|.+.-...++.++.++|.+.+++||.. ++...+ .|..+-+....-|.-+.-.+.|++|.+.+...
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~-- 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAY-- 1530 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchH--
Confidence 34444445555444555555555555555555542 322221 12222222222233444445555555544332
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
.++..|..+|...+.+++|.++|+..++. -.....+|..+|..++++.+-++|
T Consensus 1531 -~V~~~L~~iy~k~ek~~~A~ell~~m~KK--------------------------F~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1531 -TVHLKLLGIYEKSEKNDEADELLRLMLKK--------------------------FGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred -HHHHHHHHHHHHhhcchhHHHHHHHHHHH--------------------------hcchhhHHHHHHHHHhcccHHHHH
Confidence 34444555555555555555555555544 123344555555555555555555
Q ss_pred HHHHHHHHhhCCC--cHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 196 EDAYRRALSIAPD--NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 196 i~~~~~Al~l~P~--~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
...+.+|++.-|. +.. ....|..-++.|+.+.+...|+ ..+...|...+.|.-...
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE---------------------gll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE---------------------GLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH---------------------HHHhhCccchhHHHHHHH
Confidence 5555555555555 222 3344555555555555555555 778888888889988888
Q ss_pred HHHHcCCHHHHHHHHhhcccCCCC
Q 009850 273 DRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 273 ~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
.-...|+..-....|++++.+.-.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCC
Confidence 888899999999999998876543
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.35 E-value=0.00016 Score=68.88 Aligned_cols=177 Identities=17% Similarity=0.101 Sum_probs=136.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
-+.-|+.-|....+.|++++|+..|+.+...+|..++ ..+...++..+++.+++++|+...++-+++++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~--------- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT--------- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------
Confidence 4577899999999999999999999999999997644 456678889999999999999999999999443
Q ss_pred HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCcH-----------------H-
Q 009850 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQN--------NYIEAEDAYRRALSIAPDNN-----------------K- 211 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g--------~~~eAi~~~~~Al~l~P~~~-----------------~- 211 (524)
+|+-..+++..|.+++..= -..+|+..|+..+..-|+.. .
T Consensus 104 --------------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 104 --------------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred --------------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 4555678888888876542 25678999999999999871 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
=..+|..|.+.|.+..|+.-++.++..+++.. ...+++..+..+|..+|-.++|-..-.-+-
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~------------------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTS------------------AVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccccc------------------chHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 23567888889999999988886655544322 233567778889999999988877644433
Q ss_pred cCCCC
Q 009850 292 QPQPC 296 (524)
Q Consensus 292 ~~~P~ 296 (524)
.-.|.
T Consensus 232 ~N~p~ 236 (254)
T COG4105 232 ANYPD 236 (254)
T ss_pred hcCCC
Confidence 33333
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.35 E-value=1.6e-05 Score=71.35 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAIN-AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~-~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
-.++||....+.|++.+|..+|++++. +..+++..+..++...+..+++.+|...++...+.+|..-...-...++..|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 467999999999999999999999986 5778899999999999999999999999999999998532224456778899
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
...|++.+|...|+.++.. .|+ +.+...++..+.++|+..+|..-+.....
T Consensus 171 aa~g~~a~Aesafe~a~~~--------------------------ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 171 AAQGKYADAESAFEVAISY--------------------------YPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhcCCchhHHHHHHHHHHh--------------------------CCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999999999999999987 343 55777889999999998888777666554
No 184
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.35 E-value=1.2e-05 Score=78.97 Aligned_cols=234 Identities=15% Similarity=0.058 Sum_probs=119.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS---ALKDMAIVMKQQNRAEEAIEAIKSLRS----RCSDQAQESLDNI 121 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~---a~~~La~~~~~~g~~~eAi~~~~~al~----~~p~~~~~~l~~~ 121 (524)
+..-|..++...++++|+..+.+.+..-.+... .+..+..+...+|+|++++.+--..+. ..........+..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666654333222 222334555555665555444332222 2222222334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhh-------------ccHhhhc--ccHHHHHHHhHHHHHhcCCCc----HHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQ-------------QGLAFNG--KRTKTARSQGKKFQVSVEQEA----TRLLGNL 182 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~-------------~~~~~~~--~~~~~a~~~~~~~~~~~~p~~----~~a~~~L 182 (524)
++..+.+.-++.+++.+-+..+.+.. .+.++.+ ........+..++.+..+.++ ..++..|
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 45555555555555554444433310 0000000 011111222222222222333 2466667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcH----------H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDNN----------K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~----------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~ 251 (524)
|..+....++++|.-+..+|.++..... . .+.++.++..+|+...|.++++++.+
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k-------------- 234 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK-------------- 234 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH--------------
Confidence 7777777777777777776666533221 1 45566667777777777777765421
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 252 AYERAQQM--LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 252 ~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
-+++. .+-.+....-+|.+|...|+.+.|...|+.+......-+.
T Consensus 235 ---lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 235 ---LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred ---HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence 11111 2233455677899999999999999999999876554444
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.31 E-value=2.1e-05 Score=68.53 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhCCCcH
Q 009850 192 YIEAEDAYRRALSIAPDNN 210 (524)
Q Consensus 192 ~~eAi~~~~~Al~l~P~~~ 210 (524)
..+|...|++.+..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5688888999998888764
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.30 E-value=1.7e-05 Score=76.10 Aligned_cols=98 Identities=16% Similarity=0.005 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLD 124 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~ 124 (524)
.|+.|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+|++|...|..+++..|+++. ....+.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999998764 688999999999999999999999999999998754 377889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~ 146 (524)
+..++|+.++|...|+++++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHC
Confidence 9999999999999999999983
No 187
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=8.8e-05 Score=70.45 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
....-|.++...|++++|+...... .+-++.-.-..|+.++.+++-|...++++.+++.+.....+...+..+..
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhc
Confidence 3445567778888888888776652 44556666667788888888888888888888766543222222222223
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
..+.+.+|.-+|+..-+. -|..+..++.++.+++.+|+|++|...++.+|..++
T Consensus 185 ggek~qdAfyifeE~s~k--------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK--------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred cchhhhhHHHHHHHHhcc--------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 344577777777766553 466788999999999999999999999999999999
Q ss_pred CcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 208 DNNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
++++ +.|+-.+-..+|.-.++..-+-
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 9999 9999999999998877765443
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.26 E-value=3e-05 Score=65.60 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=80.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
..|..+...|+.+.|++.|.+++.+ -|..+.+|+|.+..+.-+|+.++|++.++
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l--------------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCL--------------------------APERASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh--------------------------cccchHhhccHHHHHHHcCChHHHHHHHH
Confidence 4455667889999999999999999 89999999999999999999999999999
Q ss_pred HHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 201 RALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 201 ~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+++++..+... ++..|.+|..+|+-+.|...|+.+
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 99999765432 889999999999999999999976
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.23 E-value=3e-06 Score=66.63 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINA----G---DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~----~---p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
.+..+|.++...|++++|+.+|++++.+ . |....++.++|.++..+|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666666543 1 112334555555555555555555555555543
No 190
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.21 E-value=3.4e-05 Score=67.23 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~ 120 (524)
.+..++..|...+..|+|++|++.|+.+....|. ...+...||.+|+..|++++|+..+++.++++|.++. ..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4567899999999999999999999999988664 5678899999999999999999999999999997743 24556
Q ss_pred HHHHHHHHcCC---------------hHHHHHHHHHHHHHh
Q 009850 121 ILLDLYKRCGR---------------LDDQIALLKHKLYLI 146 (524)
Q Consensus 121 ~lg~~~~~~g~---------------~~eA~~~~~~al~l~ 146 (524)
..|.+++.+.. ..+|...|++.+...
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 77777777665 778888888888773
No 191
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=9.2e-05 Score=79.56 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhhCCCc----------HH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRA----------LSIAPDN----------NK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~A----------l~l~P~~----------~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
-..|++.+.-+...++.+.|+++|+++ |.-+|.. .. |..-|..+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 458899999999999999999999875 3334433 22 45568888899999999999998
Q ss_pred hcccccCC-----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 235 VKPAVADG-----PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 235 a~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
|...+... .|..++|- .+.....+..+.+.+|+.|...|+..+|+..|.+|-
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa-----~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAA-----RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhhhheeeEeeccCchHHH-----HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 85544332 25666553 333445667789999999999999999999876553
No 192
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.17 E-value=6.9e-06 Score=64.51 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC---S-DQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~---p-~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
|+...++.++|.+|..+|++++|+.+|++++.+. + +++. ..++..+|.+|...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456789999999999999999999999999762 2 2222 578889999999999999999999999987
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=3.4e-05 Score=70.07 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA---QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~---~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
+..-|.-++..|+|++|..-|..|+...|.-+ +..++...|.++.+++.++.|+....++|++
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------------- 163 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------------- 163 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------------
Confidence 44456667777777777777777777777432 2344555566666667777777777766666
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN 210 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 210 (524)
+|.+-.++...+.+|.+...|++|+..|++.++.+|...
T Consensus 164 ------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 164 ------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred ------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 666666666667777777777777777777777666553
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.16 E-value=0.0015 Score=65.31 Aligned_cols=232 Identities=15% Similarity=0.147 Sum_probs=156.7
Q ss_pred cCCCChHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 41 KVPVGDTP--YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 41 ~~p~~~~~--~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+..+.++ +..-+...+..|+++.|.+-|+.++. +|+. .-.+..|-.--.++|..+.|..+-+.+....|.-++
T Consensus 113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~W-- 189 (531)
T COG3898 113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPW-- 189 (531)
T ss_pred hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCch--
Confidence 34444444 44456777889999999999988864 3332 112333334445789999999999999999998874
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-----HHHHHHHHHHHHcCCH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-----RLLGNLGWALMQQNNY 192 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-----~a~~~Lg~~~~~~g~~ 192 (524)
.+.......+..|+|+.|+++.+....... +.++.. ..+...+... -.-+.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----------------------ie~~~aeR~rAvLLtAkA~s~-ldadp 245 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKV-----------------------IEKDVAERSRAVLLTAKAMSL-LDADP 245 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----------------------hchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence 444555566789999999999987765410 011111 1111112111 22456
Q ss_pred HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------cCHHHH---HHHHHHHHHhC
Q 009850 193 IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP--------RGVDSH---LKAYERAQQML 260 (524)
Q Consensus 193 ~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~--------~~~~~A---~~~~~~al~~~ 260 (524)
..|...-.+++++.|+... -..-+..+++.|+..++-..++.+-+..|... ..-+.+ ++-..+...+.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 7777777778888887766 66667777788888888777777754444321 111112 33445667788
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 261 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 261 p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|++.+..+..+..-+.-|++..|...-+.+.+..|...-
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 999999999999999999999999999999998887655
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=8.3e-05 Score=70.36 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=126.6
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHcCChHH
Q 009850 57 LVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-DQAQESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 57 ~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~l~~~lg~~~~~~g~~~e 134 (524)
.+++.. +..+..+++-+ ....+.+..++..+|.|.-++..+.+.++.+| .++ .+...||.+-++.|+.+.
T Consensus 159 ~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--~L~s~Lgr~~MQ~GD~k~ 230 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--QLLSGLGRISMQIGDIKT 230 (366)
T ss_pred HHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--HHHHHHHHHHHhcccHHH
Confidence 444544 66777777754 35677888899999999999999999999885 445 677888999999999999
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC 213 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~ 213 (524)
|..+|+++-+.... +..-.....++.+.+.++.-+++|..|...|.+.+..+|.++. .+
T Consensus 231 a~~yf~~vek~~~k--------------------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 231 AEKYFQDVEKVTQK--------------------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred HHHHHHHHHHHHhh--------------------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 99999966555210 0001234557788889999999999999999999999999988 77
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 214 NLGICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 214 ~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
+.|.|++.+|+..+|+..++.+.+..|...
T Consensus 291 nKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 899999999999999999999988888765
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.09 E-value=7.7e-05 Score=67.14 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC----CHHHHHHHHHHhc
Q 009850 172 EQEATRLLGNLGWALMQQNN----------YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG----RIGEAKETLRRVK 236 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~----------~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G----~~~eA~~~~~~a~ 236 (524)
+|.+++.+++-|.++..+.+ +++|+.-|++||.++|+... ++++|.+|..++ +..+|..+|++
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k-- 98 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK-- 98 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH--
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH--
Confidence 99999999999999887643 57789999999999999998 999999998765 45677788874
Q ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
|..+|+++...+|++...+..|..
T Consensus 99 ------------A~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 99 ------------ATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp ------------HHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred ------------HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 788899999999998865555443
No 197
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.06 E-value=0.0019 Score=68.23 Aligned_cols=189 Identities=9% Similarity=0.123 Sum_probs=122.3
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDR-----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~-----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
.+...|.+.+.|... +-+..|+..+-+..|..|++. +|. -...|..+|..|...|+.+.|...|+++.+..=
T Consensus 341 lLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 445667777777655 446689999999999999874 553 346788999999999999999999999988754
Q ss_pred Cc--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH-hhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 112 DQ--AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL-AFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 112 ~~--~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~-~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
.. -...+|...|..-.+..+++.|+.+.+++...-.... .+.. ...-.... -.+..+|..++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl----------hrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL----------HRSLKIWSMYADLEE 488 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH----------HHhHHHHHHHHHHHH
Confidence 32 2246778888888888999999999999876632211 1111 10000000 012345555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850 188 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~ 238 (524)
..|-++.-...|++.+.+.--.|. ..|.|..+....-++++.+.|++..+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 555555555555555555555555 555555555555555555555554433
No 198
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.04 E-value=0.00028 Score=80.00 Aligned_cols=201 Identities=11% Similarity=0.016 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--cHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850 62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-CSD--QAQESLDNILLDLYKRCGRLDDQIAL 138 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-~p~--~~~~~l~~~lg~~~~~~g~~~eA~~~ 138 (524)
-.+..+-|.+.+..+|+..-.|..+-..+.++++.++|.+..++|+.. ++. +-..++|.++..+...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888999999999999888899999999999999999875 332 22246667666666677877777888
Q ss_pred HHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850 139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI 217 (524)
Q Consensus 139 ~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~ 217 (524)
|++|.+. -+...+|..|.-+|...+.+++|.++|+..++...+... |..+|.
T Consensus 1520 FeRAcqy---------------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1520 FERACQY---------------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHHh---------------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9998876 233558889999999999999999999999998886666 999999
Q ss_pred HHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850 218 CLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 218 ~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P 295 (524)
.++++.+-++|...+. +|+...|. +.+..-..+.+-++.|+.+.+...|+-.+.-.|
T Consensus 1573 fLl~~ne~~aa~~lL~---------------------rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLK---------------------RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred HHhcccHHHHHHHHHH---------------------HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 9999999999999998 55666665 555667778899999999999999999999998
Q ss_pred CCCCccccccccccccccc
Q 009850 296 CKDHILPTTNAIKTRDDFA 314 (524)
Q Consensus 296 ~~~~~l~~~~l~~~~q~lg 314 (524)
.-...- .+|.++.++
T Consensus 1632 KRtDlW----~VYid~eik 1646 (1710)
T KOG1070|consen 1632 KRTDLW----SVYIDMEIK 1646 (1710)
T ss_pred cchhHH----HHHHHHHHc
Confidence 876644 667665554
No 199
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0011 Score=63.09 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=68.7
Q ss_pred CcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850 174 EATRLLGNLGWALMQQ----NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 248 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~----g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~ 248 (524)
++-.++..|+..+... +.+.+|.-+|++.-+..|-.+. ....+.|.+.+|+|++|...++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~--------------- 231 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE--------------- 231 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH---------------
Confidence 3444555555555432 4577788888877775554555 7777888888888888888877
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-hhcccCCCCCC
Q 009850 249 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS-SSIWQPQPCKD 298 (524)
Q Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~-~~al~~~P~~~ 298 (524)
.++..++.+++++.|+-.+-...|...++...+ .+.....|.++
T Consensus 232 ------eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 232 ------EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred ------HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666777777778888777777777777766653 33334444433
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00047 Score=65.40 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAG-DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR----CSDQAQESLDNILL 123 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~----~p~~~~~~l~~~lg 123 (524)
.+.+..++...|.|.-.+..+.++++.+ |..+.....||.+-++.|+.+.|..+|+..-+. +.-.....++.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3456677888899999999999999987 667788889999999999999999999965443 33333346777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
.+|...+++.+|...|.+++.. ||.++.+.++.+.|++..|+..+|++..+.++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~--------------------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRM--------------------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hheecccchHHHHHHHhhcccc--------------------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999888 99999999999999999999999999999999
Q ss_pred hhCCCcHH----HHHHHHHH
Q 009850 204 SIAPDNNK----MCNLGICL 219 (524)
Q Consensus 204 ~l~P~~~~----~~~Lg~~~ 219 (524)
...|.... .+||-..|
T Consensus 314 ~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 314 QQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred ccCCccchhhhHHHHHHHHH
Confidence 99998644 45555554
No 201
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.99 E-value=0.00098 Score=70.37 Aligned_cols=250 Identities=15% Similarity=0.083 Sum_probs=173.2
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD----RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ------- 113 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p----~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~------- 113 (524)
-...|...|..|...|+.+.|...|+++.+..= +-+..|...|..-.+..+++.|+.+.+++.......
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 344689999999999999999999999998742 336778889988889999999999999987653220
Q ss_pred ---HH------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccH------hhhcccHHHHHHHhHHHHHhc----CCC
Q 009850 114 ---AQ------ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGL------AFNGKRTKTARSQGKKFQVSV----EQE 174 (524)
Q Consensus 114 ---~~------~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~------~~~~~~~~~a~~~~~~~~~~~----~p~ 174 (524)
++ ..+|..++++....|-++.....|++.+.+.-... +..-..........+.++.++ -|.
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 11 35677888888889999999999999988752111 111011111111122222222 366
Q ss_pred cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----
Q 009850 175 ATRLLGNLGWALM---QQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRRVKPAVADGP----- 243 (524)
Q Consensus 175 ~~~a~~~Lg~~~~---~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----- 243 (524)
-.+.|+..-.-+. .....+.|...|++||+..|.... +...+..-.+-|-...|+..|++|........
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~my 625 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6677766544333 234789999999999998874322 44556666677999999999999744333221
Q ss_pred ----------cCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 244 ----------RGVDSHLKAYERAQQMLKDLESE--MMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 244 ----------~~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
-+.......|+++++..|+.... ....+..-...|..+.|...|...-+.-
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 01112357899999999987654 3455778888999999999988776653
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.00093 Score=72.99 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=97.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQI 136 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~ 136 (524)
...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++. .....+-.+|..+|++++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--LTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch--HHHHHHHHHHHHHhhhhHHH
Confidence 4566777777777777777777777777777777777777777766665555555543 44455666777777777777
Q ss_pred HHHHHHHHHhhccHhhhcccHHHH------HHHhH-HHH-HhcCCCcHHHHHHHHHHHHH-cCCHH---------HHHHH
Q 009850 137 ALLKHKLYLIQQGLAFNGKRTKTA------RSQGK-KFQ-VSVEQEATRLLGNLGWALMQ-QNNYI---------EAEDA 198 (524)
Q Consensus 137 ~~~~~al~l~~~~~~~~~~~~~~a------~~~~~-~~~-~~~~p~~~~a~~~Lg~~~~~-~g~~~---------eAi~~ 198 (524)
.+|++++..++. ....-..+.+. ....+ .++ ...-|..+..+...-.++++ ....+ -|...
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 777777776543 11111000000 00000 000 11246665444443333333 32222 35556
Q ss_pred HHHHHhhC-CCcHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 199 YRRALSIA-PDNNK--MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 199 ~~~Al~l~-P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+++.++.. +-... ....-.++..+|++++|...+..
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 66666654 22211 34445566777888888888753
No 203
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.1e-05 Score=75.18 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 258 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 258 (524)
..-|+.++...+|..|+.+|.+++.++|..+. |.|.+.|++++.+|+....... ++++
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcr---------------------ralq 72 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCR---------------------RALQ 72 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHH---------------------HHHh
Confidence 34577788889999999999999999999988 8899999999999999999988 8999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
+.|+...+++.+|.++.....+++|+..+++++.+.
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986543
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=4.4e-05 Score=68.64 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH---HHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHH
Q 009850 191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI---GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 266 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~---~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 266 (524)
-|+.|.+.++.....+|.+.+ +++-|.++..+.++ .++...++ +|+.-|++++.++|+...+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mie--------------dAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIE--------------DAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHH--------------HHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHH--------------HHHHHHHHHHhcCCchHHH
Confidence 378999999999999999999 99999999888665 55777777 5788899999999999999
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHhhcccCCCCCCCc
Q 009850 267 MMNKGGDRVEQSR-----------LFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 267 ~~~lg~~~~~~g~-----------~~eAi~~~~~al~~~P~~~~~ 300 (524)
++++|.+|..++. |++|..+|+++...+|.+...
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999887776 577888999999999998763
No 205
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0017 Score=70.16 Aligned_cols=170 Identities=11% Similarity=0.023 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.-...|....+.|..++|+.+|++.-+ +-.|-..|...|.+++|.+.-+.-=+++-. ..++.++.-+.
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLE 869 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHH
Confidence 344567777888999999999988633 446667888899999988776542222222 45566777788
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA- 206 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~- 206 (524)
..++.+.|+++|+++-...-.-.............+.+ ...+...|...|..+...|+.+.|+.+|..|-...
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~------~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR------RKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS 943 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH------hccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh
Confidence 88999999999997632100000000001111111111 13445678888999999999999999998874321
Q ss_pred --------------------CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 207 --------------------PDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 207 --------------------P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
..+.. -|.+|.-|...|++.+|+..|.+|
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22223 678999999999999999999986
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.92 E-value=2.6e-05 Score=54.03 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAI 88 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~ 88 (524)
++|+.+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567788888888888888888888888888888888887775
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00057 Score=66.22 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=116.9
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
.|...+.-+..+.-....|++.+|...|..++...|++.++...++.||...|+.+.|...+...-....+..+.. ...
T Consensus 130 ~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a 208 (304)
T COG3118 130 LPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQA 208 (304)
T ss_pred cChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHH
Confidence 3445556677788889999999999999999999999999999999999999999999888776433322222111 111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
...++.+.....+... +.+.+.. +|++..+-+.++..+...|++++|.+.+-.
T Consensus 209 ~i~ll~qaa~~~~~~~-l~~~~aa--------------------------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 209 QIELLEQAAATPEIQD-LQRRLAA--------------------------DPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHHHHHhcCCCHHH-HHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1223333333333222 2222223 899999999999999999999999999999
Q ss_pred HHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 202 ALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 202 Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
.+..+..... .-.+-.++...|..+.+...|++
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9988755433 56666777777755555555553
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.90 E-value=0.0006 Score=72.59 Aligned_cols=169 Identities=21% Similarity=0.269 Sum_probs=124.9
Q ss_pred HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH--------HHHH----HcCCHHHHHHHHHHH
Q 009850 39 IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA--------IVMK----QQNRAEEAIEAIKSL 106 (524)
Q Consensus 39 ~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La--------~~~~----~~g~~~eAi~~~~~a 106 (524)
+..+|.. ...+-.+.--.||-+.++..+.++.+. ++--..+..|. ..+. .....+.|.+.+...
T Consensus 184 lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~ 259 (468)
T PF10300_consen 184 LSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEM 259 (468)
T ss_pred HHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence 3445554 555556666789999999999999873 22211111111 1111 244678899999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
.+..|+.. ......|.++...|+.++|++.|++++..... ...-..-.++.+|+++
T Consensus 260 ~~~yP~s~--lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----------------------~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 260 LKRYPNSA--LFLFFEGRLERLKGNLEEAIESFERAIESQSE----------------------WKQLHHLCYFELAWCH 315 (468)
T ss_pred HHhCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----------------------HHhHHHHHHHHHHHHH
Confidence 99999987 45567799999999999999999998853100 0111234789999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCH-------HHHHHHHHHh
Q 009850 187 MQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRI-------GEAKETLRRV 235 (524)
Q Consensus 187 ~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~-------~eA~~~~~~a 235 (524)
..+++|++|..+|.+.++.+.-... .|..|.|+...|+. ++|...+.++
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999998777666 67889999999999 7777777765
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00064 Score=66.56 Aligned_cols=200 Identities=13% Similarity=-0.010 Sum_probs=139.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAG---DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
+.+|.+....+.--+=.+.++++..-. ....+-...-+.++...|++.+|....++.++-.|.+- ..+..--.++
T Consensus 70 ~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~ 147 (491)
T KOG2610|consen 70 FALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAH 147 (491)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhh--hhhhhhhhHH
Confidence 345555555554444444444443211 11113344456677888999999999999999999885 2333334566
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+..|+...-...+++.+-..+.+ -|-...+.-.++..+...|-|++|++.-+++++++
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~d----------------------lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN 205 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNAD----------------------LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN 205 (491)
T ss_pred HhccchhhhhhHHHHhccccCCC----------------------CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence 77888888888888877542111 13335677788999999999999999999999999
Q ss_pred CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850 207 PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 285 (524)
Q Consensus 207 P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~ 285 (524)
|.+.. ...++.++...|++.++.+...+........+ + -...-|+.-+..+.+.+.|+.|+.
T Consensus 206 ~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~--m---------------lasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 206 RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW--M---------------LASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh--H---------------HHhhhhHHHHHhhhcccchhHHHH
Confidence 99988 88899999999999999999986433221111 0 011245677888889999999999
Q ss_pred HHhhc
Q 009850 286 GSSSI 290 (524)
Q Consensus 286 ~~~~a 290 (524)
.|.+-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88643
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.84 E-value=3.5e-05 Score=53.38 Aligned_cols=41 Identities=29% Similarity=0.261 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI 217 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~ 217 (524)
.++..+|.+|..+|++++|+..|+++++.+|+++. |..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57899999999999999999999999999999999 888875
No 211
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=5.3e-05 Score=70.70 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=86.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG 130 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g 130 (524)
.-|..++...+|..|+.+|.++|.++|..+.++.+.+.|++++.+++......++++++.|+.. ..++.+|.......
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v--k~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV--KAHYFLGQWLLQSK 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH--HHHHHHHHHHHhhc
Confidence 3466778889999999999999999999999999999999999999999999999999999987 66788899999999
Q ss_pred ChHHHHHHHHHHHHHh
Q 009850 131 RLDDQIALLKHKLYLI 146 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~ 146 (524)
.|++|+..+.++..+.
T Consensus 93 ~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLL 108 (284)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999997763
No 212
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00051 Score=67.24 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=131.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHH-HHHHHHHHHHHHHcC
Q 009850 53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-CSDQAQ-ESLDNILLDLYKRCG 130 (524)
Q Consensus 53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-~p~~~~-~~l~~~lg~~~~~~g 130 (524)
+.+....|++-+|...+++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++.+- ..+.-+++-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 345677889999999999999999999999888889999999999999999999887 666532 234456677788999
Q ss_pred ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-
Q 009850 131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN- 209 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~- 209 (524)
-|++|.+.-++++++ ++.+..+...++.++...|++.++.+...+--..-...
T Consensus 190 ~y~dAEk~A~ralqi--------------------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ 243 (491)
T KOG2610|consen 190 IYDDAEKQADRALQI--------------------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW 243 (491)
T ss_pred cchhHHHHHHhhccC--------------------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh
Confidence 999999999999999 89999999999999999999999999887765433322
Q ss_pred ---HH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 210 ---NK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 210 ---~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
.. |...+.++++.+.|+.|++.|.+
T Consensus 244 mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 11 66789999999999999999987
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0045 Score=57.92 Aligned_cols=195 Identities=11% Similarity=0.034 Sum_probs=121.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHcCCh
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS----DQAQESLDNILLDLYKRCGRL 132 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p----~~~~~~l~~~lg~~~~~~g~~ 132 (524)
.-.+.+++|.++|.++ |..|....++..|=..|.++-..+- .+-....+...+.+| +.++.
T Consensus 25 gg~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~ 89 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDP 89 (288)
T ss_pred CCCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccCh
Confidence 3445788888888776 3444555555555555555544322 111123444444454 45699
Q ss_pred HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCcHH
Q 009850 133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.+|+.++++++++...-- + -..-+..+..+|.+|... .++++|+.+|+++-+.......
T Consensus 90 ~eAv~cL~~aieIyt~~G-----r---------------f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees 149 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMG-----R---------------FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES 149 (288)
T ss_pred HHHHHHHHHHHHHHHhhh-----H---------------HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence 999999999998831100 0 011234567889888776 8999999999999876543311
Q ss_pred -------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850 212 -------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 284 (524)
Q Consensus 212 -------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi 284 (524)
+.-.+..-..+|+|.+|+..|+++.....++. .+.. ......+.-|.+++...+.-.+.
T Consensus 150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~------------LLKy--s~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN------------LLKY--SAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HHHh--HHHHHHHHHHHHhHhcccHHHHH
Confidence 34456666788999999999997532221111 0000 01123455678888888887777
Q ss_pred HHHhhcccCCCCCCCc
Q 009850 285 LGSSSIWQPQPCKDHI 300 (524)
Q Consensus 285 ~~~~~al~~~P~~~~~ 300 (524)
..+++-.+.+|.....
T Consensus 216 ~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 216 RALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHhcCCccccc
Confidence 7777777888887663
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0047 Score=57.84 Aligned_cols=170 Identities=19% Similarity=0.220 Sum_probs=118.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA----GD--RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--- 115 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~----~p--~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~--- 115 (524)
..+.|...|+.|-...++..|-..|.++-.. +. +.+..|...+.||.+ ++.++|+.++++++.+..+-++
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH
Confidence 4456778888888888999999888888764 22 234455566666665 5999999999999999876543
Q ss_pred -HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 116 -ESLDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 116 -~~l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
...+..+|.+|... .++++|+.+|+++-+.+...-. ....-..+.-.+..-...++|.
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--------------------~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--------------------VSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 23445788888655 8999999999999776311000 0111235556677777889999
Q ss_pred HHHHHHHHHHhhCCCcHH--------HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 194 EAEDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 194 eAi~~~~~Al~l~P~~~~--------~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+|+..|+++....-+++. ++.-|.|++-..+.-.+...+++.
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 999999999887666533 345677887767665555555543
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.72 E-value=7.4e-05 Score=48.40 Aligned_cols=34 Identities=44% Similarity=0.611 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3589999999999999999999999999999975
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.71 E-value=0.0019 Score=66.74 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=97.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~ 164 (524)
.+-.-..+..+...-+++-++|++++|+.+ .++..|+.- ...-..+|..+|+++++.....+.... .....+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCA--dAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~----~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCA--DAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ----FLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhh--HHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh----hhhccc
Confidence 333444556678888888888899888876 565666532 345578888888888876432221100 000000
Q ss_pred HHHHHhcC-CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HH--HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 165 KKFQVSVE-QE--ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN-NK--MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 165 ~~~~~~~~-p~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~--~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
........ .- ...+...+|.|..+.|+.++|++.|+..++..|.. .. +.+|..++..++++.++...+.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 00000000 11 14466789999999999999999999999988864 33 899999999999999999999975
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.68 E-value=4.2e-05 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 68 LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAI 100 (524)
Q Consensus 68 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi 100 (524)
+|+++|+++|+++.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478899999999999999999999999999886
No 218
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.68 E-value=0.036 Score=61.03 Aligned_cols=201 Identities=15% Similarity=0.015 Sum_probs=126.1
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
+.+.+.|....+-..-|...++.|+.++|..+++..-...+++...+..+-.||..+|++++|..+|++++..+|+.
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e--- 110 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSE--- 110 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH---
Confidence 35567788888888889999999999999988888777788889999999999999999999999999999999983
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-Hhhh-----------------cccHHH-H-HHHhHHHHHhcC-CCc
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG-LAFN-----------------GKRTKT-A-RSQGKKFQVSVE-QEA 175 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~-~~~~-----------------~~~~~~-a-~~~~~~~~~~~~-p~~ 175 (524)
.....+..+|.+.+.|.+-.+.--+..+..+.. ..++ ....-. + ...+..+ ... +-.
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l--~~~gk~~ 188 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL--EKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh--ccCCccc
Confidence 444555566667777655333222211111110 0000 000000 0 0111111 111 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhCCCcHH-HH-HHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 176 -TRLLGNLGWALMQQNNYIEAEDAYR-RALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 176 -~~a~~~Lg~~~~~~g~~~eAi~~~~-~Al~l~P~~~~-~~-~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
..=....-.++..+|.|++|.+.+. ...+..+..+. .. .-+..+..+++|.+-.+...+++...+++
T Consensus 189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 189 SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1111223345667899999999994 33334444333 33 34555667788887777777766655554
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.63 E-value=0.0085 Score=62.11 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=101.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD------------------ 112 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~------------------ 112 (524)
.+-....+..++.+-++.-++|++++|+.+.+|..||.-. ..-..+|.++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4455667889999999999999999999999999887522 12356677777776654221
Q ss_pred -----cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHH
Q 009850 113 -----QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWA 185 (524)
Q Consensus 113 -----~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~ 185 (524)
++...+...++.+..++|+.++|++.++..++. .|. +..++.+|-.+
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke--------------------------~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE--------------------------FPNLDNLNIRENLIEA 304 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh--------------------------CCccchhhHHHHHHHH
Confidence 111344567899999999999999999999987 443 46799999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh-CCCcHHH
Q 009850 186 LMQQNNYIEAEDAYRRALSI-APDNNKM 212 (524)
Q Consensus 186 ~~~~g~~~eAi~~~~~Al~l-~P~~~~~ 212 (524)
+...+.|.++...+.+--.+ -|+...+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 99999999999998886433 2555553
No 220
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0013 Score=65.25 Aligned_cols=133 Identities=10% Similarity=0.065 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ-QNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
|..+.....+.+..+.|...|.+|++..+-....|...|.+-+. .++.+.|...|+.+++..|.+. .+|..+.+.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHH
Confidence 55555555555556666666666664444455666666666444 3444446666666666666665 44555555666
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
..|+.+.|..+|++++.. -|.. ..+|......-...|+.+....+++++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--------------------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--------------------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--------------------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--------------------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666544 1211 23555555555566666666666666666
Q ss_pred hCCCc
Q 009850 205 IAPDN 209 (524)
Q Consensus 205 l~P~~ 209 (524)
..|+.
T Consensus 136 ~~~~~ 140 (280)
T PF05843_consen 136 LFPED 140 (280)
T ss_dssp HTTTS
T ss_pred Hhhhh
Confidence 65553
No 221
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.62 E-value=0.00014 Score=46.90 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
+.+|+.+|.+++..|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3588999999999999999999999999999985
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.62 E-value=0.0054 Score=61.41 Aligned_cols=201 Identities=15% Similarity=0.068 Sum_probs=141.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhH
Q 009850 86 MAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGK 165 (524)
Q Consensus 86 La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~ 165 (524)
-|.+-...|+-..|.+.-.++-++-..+....++..-++.-.-.|++++|.+-|+.++..
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-------------------- 149 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-------------------- 149 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------------------
Confidence 356666678888888888887755444432344455556666789999999988877642
Q ss_pred HHHHhcCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 166 KFQVSVEQEATRLLGNLGW--ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 166 ~~~~~~~p~~~~a~~~Lg~--~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
|+. ..+-..|. --.+.|..+.|+.+-+++-...|.-+. +...-...+..|+|+.|++..+.........
T Consensus 150 -------PEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 150 -------PET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred -------hHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 332 12222222 224678888888888888888888877 6666667778888998888887753222111
Q ss_pred C--------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccc
Q 009850 243 P--------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP 302 (524)
Q Consensus 243 ~--------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~ 302 (524)
. .+...|...-.++.++.|++..+-.--+..+++.|+..++-...+.+|+..|...-
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--- 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--- 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH---
Confidence 1 23345666777899999999999999999999999999999999999999985432
Q ss_pred ccccccccccccccccc
Q 009850 303 TTNAIKTRDDFADENID 319 (524)
Q Consensus 303 ~~~l~~~~q~lgd~~~~ 319 (524)
.+.|.+..-||+...
T Consensus 299 --a~lY~~ar~gdta~d 313 (531)
T COG3898 299 --ALLYVRARSGDTALD 313 (531)
T ss_pred --HHHHHHhcCCCcHHH
Confidence 356666666776654
No 223
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00047 Score=64.71 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHH-----------HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSI--------APDNNK-----------MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------~P~~~~-----------~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
..++..-|+-+++.|+|.+|...|+.|+-. .|..+. +.|...|+...|+|-++++...
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s--- 254 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS--- 254 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH---
Confidence 457888899999999999999999999742 354432 5688889999999988888888
Q ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
..+...|.+..+++.+|.++...-+..+|...+..++.++|....++
T Consensus 255 ------------------eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 255 ------------------EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred ------------------HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 78889999999999999999999999999999999999999877654
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.49 E-value=0.00012 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+|+++.+|++||.+|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 99999999999999999999999963
No 225
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0038 Score=58.82 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.+...-|.-++..|+|.+|...|+.|+... ..+.+..+..+..- +.++......+.|++.|+...|+|-+++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l-~~L~lkEkP~e~eW-------~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICL-RNLQLKEKPGEPEW-------LELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHH-HHHHhccCCCChHH-------HHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 344566777889999999999999998652 11111111000000 0001222357889999999999999999
Q ss_pred HHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 197 DAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
++....|...|.+.. ++..|.+....=+.++|...|..++..+
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999989999999999544433
No 226
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.00084 Score=68.71 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=118.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC------cHHHHHHHHHHHHHH
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL-RSRCSD------QAQESLDNILLDLYK 127 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a-l~~~p~------~~~~~l~~~lg~~~~ 127 (524)
.++...+..-+..-...+.....+.+.++...+..++..|+|..|.+.+... +...|. -.....|+.+|.+++
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 4466667777888888888888889999999999999999999999988653 222222 112356689999999
Q ss_pred HcCChHHHHHHHHHHHH-Hhh-ccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 128 RCGRLDDQIALLKHKLY-LIQ-QGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~-l~~-~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
+.|.|.-+..+|.++++ ... ....+....... -.....-.++||.|..|...|+.-.|.++|.+++..
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t----------ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT----------LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee----------hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999996 210 000000000000 002234678999999999999999999999999999
Q ss_pred CCCcHH-HHHHHHHHHHc
Q 009850 206 APDNNK-MCNLGICLMKQ 222 (524)
Q Consensus 206 ~P~~~~-~~~Lg~~~~~~ 222 (524)
...+|. |..++.|++..
T Consensus 365 fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhcCcHHHHHHHHHHHHH
Confidence 999999 99999998654
No 227
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.40 E-value=0.00035 Score=45.13 Aligned_cols=31 Identities=23% Similarity=0.104 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD 112 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~ 112 (524)
+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555443
No 228
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.35 E-value=0.00051 Score=44.21 Aligned_cols=31 Identities=23% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD 112 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~ 112 (524)
+++.+|.++..+|++++|+.+|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444455555555555555555555544443
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.01 Score=52.46 Aligned_cols=60 Identities=32% Similarity=0.350 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
..++..++..+...|++++|+..+++++..+|.+.. |..+-.+|...|+..+|+..|++.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 346778889999999999999999999999999988 999999999999999999999974
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.013 Score=55.33 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=116.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HH-
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQ- 115 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~~- 115 (524)
..+.|...+..+....+|++|-.++.++++-..++ +.++-..|.+...+..+.++..+|+++..+.-.+ +.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45678888999999999999999999999654333 3445567788888899999999999988775321 10
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
.......+--..+.-+.++|+++|++++.+...+- + .....+.+...+.++.+..+|.+|
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~d-----r---------------~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDD-----R---------------DQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-----h---------------HHHHHHHHHHhhhHhhhhHHhhHH
Confidence 01111122223466789999999999988721100 0 011244667788999999999999
Q ss_pred HHHHHHHHhh----CCCcHH---HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 196 EDAYRRALSI----APDNNK---MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 196 i~~~~~Al~l----~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
-..+.+-..+ +..+.. +.....+|....+|..|..+|+..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 8888765433 222222 444555566667999999999863
No 231
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.32 E-value=0.00032 Score=71.94 Aligned_cols=94 Identities=14% Similarity=-0.001 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~ 129 (524)
-..+...+..++|+.|+..|.+||+++|+++..+.+.+.++.+.+++..|+..+.++++.+|... ..++..|..++.+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~--K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI--KAYVRRGTAVMAL 85 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh--heeeeccHHHHhH
Confidence 34566778899999999999999999999999999999999999999999999999999999887 6777778889999
Q ss_pred CChHHHHHHHHHHHHH
Q 009850 130 GRLDDQIALLKHKLYL 145 (524)
Q Consensus 130 g~~~eA~~~~~~al~l 145 (524)
+++.+|...|+....+
T Consensus 86 ~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999999998888
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.027 Score=53.24 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--Q--ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--~--~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
..|..-+.+|+..++|++|...+.++.+-...+. + ...+-..+.+......+.++..+|+++..++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~--------- 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV--------- 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------
Confidence 3455567888999999999999999986655431 1 22333455566778899999999999988731
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH------H-HHHHHHHHHHcCCHHHHH
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN------K-MCNLGICLMKQGRIGEAK 229 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~------~-~~~Lg~~~~~~G~~~eA~ 229 (524)
....|+.+..-...+.-....-+.++|+..|++++.+-.... . +...+.++.+..++.+|-
T Consensus 103 ------------E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ------------ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred ------------HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 111455544444444445577899999999999988643331 1 556788899999999998
Q ss_pred HHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 230 ETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
..+.+-.. ...-....++.-..+...-.+|.-..+|..|..+|+...+.
T Consensus 171 ~a~lKe~~---------------~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 171 TAFLKEGV---------------AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHhhh---------------HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 88875211 11222333444445555556777778999999999876554
No 233
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0083 Score=58.99 Aligned_cols=99 Identities=19% Similarity=0.133 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eA 195 (524)
.-+.--|.-|++..+|..|+.+|.+.|... .-+|+- +..|.|.+.+....|+|..|
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----------------------c~D~dlnavLY~NRAAa~~~l~NyRs~ 138 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----------------------CADPDLNAVLYTNRAAAQLYLGNYRSA 138 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----------------------CCCccHHHHHHhhHHHHHHHHHHHHHH
Confidence 334456788888999999999999998772 113433 66888999999999999999
Q ss_pred HHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850 196 EDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~ 238 (524)
+..+.+++.++|.+.. ++.-+.|+..+.++.+|..+++..+..
T Consensus 139 l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 139 LNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999 888999999999999999999976443
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0056 Score=60.75 Aligned_cols=125 Identities=13% Similarity=0.036 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR-CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
+|..+.....+.+..+.|...|.+|.+..+... .+|...|.+.+. .++.+.|...|+.+++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------------- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKK--------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence 566777788888889999999999985444333 677777888666 45666699999999988
Q ss_pred HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-H---HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-K---MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-~---~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
-|.+...|..+...+...|+.+.|...|++++..-|... . |......-.+.|+.+....++++
T Consensus 66 -----------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 66 -----------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp -----------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 688999999999999999999999999999999888776 2 66666777778888877777773
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.26 E-value=0.036 Score=56.58 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhhccHh
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC----SDQAQESLDNILLDLYKR---CGRLDDQIALLKHKLYLIQQGLA 151 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~l~~~lg~~~~~---~g~~~eA~~~~~~al~l~~~~~~ 151 (524)
.++...++=..|+...+|+.=+++.+..-.+. ++.. .+...+|-++.+ .|+.++|+..+..++...
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~--~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----- 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQH--NIKFQYAFALNRRNKPGDREKALQILLPVLESD----- 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcch--HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----
Confidence 34556777788999999999999998876662 2333 455666777777 899999999999865441
Q ss_pred hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHc
Q 009850 152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ---------NNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQ 222 (524)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~ 222 (524)
.+.+++++..+|.+|-.. ...++|+.+|.++.+++|+.-.-.|++.++...
T Consensus 213 --------------------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 213 --------------------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred --------------------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 567788999999887532 247899999999999997665577888888888
Q ss_pred CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 223 GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 223 G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|...+....++++.-.. +...-++.....-.+-..+-.++.+..-.|+++.|+..+++++...|..+.
T Consensus 273 g~~~~~~~el~~i~~~l---------~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKL---------SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred CCcccchHHHHHHHHHH---------HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 87555444444321000 000000111111122233455667888899999999999999999887776
No 236
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.024 Score=51.89 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHH
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQ 163 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~ 163 (524)
.++..+...|++++|+..++.++....+.. ...+...|+.+....|.+++|+..+......
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~------------------ 155 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE------------------ 155 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc------------------
Confidence 345555566666666666666655443331 1233345555666666666666555432211
Q ss_pred hHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 164 GKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 164 ~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
.-.+..-...|.++...|+-++|...|+++++..++.
T Consensus 156 ---------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 ---------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ---------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 0012233445666666666666666666666655433
No 237
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0084 Score=58.94 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAG---DR-VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~-~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
..|-.-|+-|+...+|..|+..|.+.|+.. |+ +...|.+.|.+...+|+|..|+....+++.++|.+. .+++.-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhh
Confidence 346678999999999999999999999974 33 345688999999999999999999999999999997 666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l 145 (524)
+.++..+.++++|..+.+..+++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 88899999999999999988776
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.22 E-value=0.0056 Score=65.24 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=101.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHcCChHHH
Q 009850 58 VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QAQESLDNILLDLYKRCGRLDDQ 135 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~l~~~lg~~~~~~g~~~eA 135 (524)
...+.+.|..++.......|+..-.++..|.++...|+.++|++.|++++..... ..+..+++.++.++..+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3567789999999999999999999999999999999999999999998854332 23345677889999999999999
Q ss_pred HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhC
Q 009850 136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNY-------IEAEDAYRRALSIA 206 (524)
Q Consensus 136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~-------~eAi~~~~~Al~l~ 206 (524)
..+|.+.++. +.- .+-..+..|.++...|+. ++|...|.++-.+.
T Consensus 325 ~~~f~~L~~~--------------------------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 325 AEYFLRLLKE--------------------------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhc--------------------------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999876 322 244667889999999999 88888888776543
No 239
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.18 E-value=0.0029 Score=66.12 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=61.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVD--SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~--~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
..+..+..+|+..+|+.++..++-..|.+. -++..+|.++.+.|...+|--.+..|+...|... .-++.++.++..
T Consensus 218 ~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t--~n~y~l~~i~am 295 (886)
T KOG4507|consen 218 MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT--SNYYTLGNIYAM 295 (886)
T ss_pred HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc--ccceeHHHHHHH
Confidence 344455668999999999999998866543 3577889999999999999888888877766332 113444555555
Q ss_pred cCChHHHHHHHHHH
Q 009850 129 CGRLDDQIALLKHK 142 (524)
Q Consensus 129 ~g~~~eA~~~~~~a 142 (524)
+|.+.....+|..+
T Consensus 296 l~~~N~S~~~ydha 309 (886)
T KOG4507|consen 296 LGEYNHSVLCYDHA 309 (886)
T ss_pred Hhhhhhhhhhhhhh
Confidence 55555544444443
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.012 Score=52.14 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDR----------------------VDSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~----------------------~~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
+...|......|+.+.++..+.+++.+-.+ ...++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344566677889999999999999986211 1123456788888999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+..+|.+. .++..+..+|...|+..+|+..|+++...
T Consensus 89 l~~dP~~E--~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 89 LALDPYDE--EAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhcCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999886 67788899999999999999999998765
No 241
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.16 E-value=0.00038 Score=71.44 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM 259 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 259 (524)
+-+.-.+..+.|+.|+..|.+|++++|++.. +-+.+.++.+.+++..|+..+. ++++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~---------------------kaie~ 67 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDAL---------------------KAIEL 67 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHH---------------------hhhhc
Confidence 4456666777888888888888888888877 7778888888888888888777 66666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
+|....+|+..|.+.+..+++.+|+..|+......|+...
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 6777777777777777777777777777766666666554
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0061 Score=62.64 Aligned_cols=105 Identities=9% Similarity=0.001 Sum_probs=76.8
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHH-HHcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAA-INAGDR--------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSR--- 109 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a-l~~~p~--------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~--- 109 (524)
-...+.+.+.-...++..|++.+|.+.+-.. +...|. ..-.|.+||-+++++|.|.-+..+|.++++.
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 3455666777788889999999999877543 222232 1233678999999999999999999999861
Q ss_pred ------CCC-------cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 110 ------CSD-------QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 110 ------~p~-------~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
.|. +-...+.+..|..|...|+.-.|.++|.+++...
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 111 1124567788889999999999999999987665
No 243
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.051 Score=60.55 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
.++.|..+|...+..|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+..... .+-..|..
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHH
Confidence 3445666666666666666666666544 445555555566666666666666665554433221 11112222
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
.|.+.++..+-.+++. .|+.+ -.-..|.-++..|.|+.|.-.|...-
T Consensus 1175 AyAkt~rl~elE~fi~-------------------------------gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~vS- 1221 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------------------------------GPNVA-NIQQVGDRCFEEKMYEAAKLLYSNVS- 1221 (1666)
T ss_pred HHHHhchHHHHHHHhc-------------------------------CCCch-hHHHHhHHHhhhhhhHHHHHHHHHhh-
Confidence 2334455444333221 23332 22345555556666666655554221
Q ss_pred hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.|..|+..+..+|+|..|+..-++|
T Consensus 1222 ------N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 ------NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1555666666666666666665554
No 244
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.97 E-value=0.0014 Score=42.17 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
.+|+.+|.+|...|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999853
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.028 Score=54.72 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-CcCHHHH----
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG-PRGVDSH---- 249 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-~~~~~~A---- 249 (524)
...-+.-+.-....|++.+|...|..++...|++.. ...++.||...|+.++|...+...-...... +......
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334556677788999999999999999999999988 8899999999999999999998742222111 1111111
Q ss_pred --------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 250 --------LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 250 --------~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
...+++.+..+|++..+.+.++..+...|+.++|...+-..++.+-....
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 24566777889999999999999999999999999998888777654433
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.048 Score=49.95 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY 253 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~ 253 (524)
+...++..+...|++++|+..++.++....+..- -.+||.+...+|.+++|+..+.....
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------------- 154 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------------- 154 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----------------
Confidence 4567788899999999999999999974444322 56899999999999999999985321
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 254 ERAQQMLKDLE-SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 254 ~~al~~~p~~~-~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
+.+. ..-...|.++...|+..+|+..|++++...+..
T Consensus 155 -------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 155 -------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1122 233556999999999999999999999887543
No 247
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.85 E-value=0.11 Score=51.63 Aligned_cols=143 Identities=16% Similarity=0.091 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 47 TPYVRAKNVQLVD----KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 47 ~~~~~lg~~~~~~----g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
.+.+.+|.++... .+..+|+.+|+.+ ....++.+.+.||.+|.. ..++.+|..+|+++........ ...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALA 150 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHH
Confidence 4667777776553 4577888888844 455667788888888877 4488888888888888755442 123
Q ss_pred HHHHHHHHHHcC-------ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH---
Q 009850 119 DNILLDLYKRCG-------RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ--- 188 (524)
Q Consensus 119 ~~~lg~~~~~~g-------~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~--- 188 (524)
...++..|..-. +...|...|.++-.. .++.+.+++|.+|..
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----------------------------~~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----------------------------GNPDAQLLLGRMYEKGLG 202 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHcCCC
Confidence 455555554431 223566666666554 477899999988865
Q ss_pred -cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850 189 -QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 223 (524)
Q Consensus 189 -~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G 223 (524)
..++.+|+.+|.++-+... .. .++++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3489999999999999877 55 78888 777666
No 248
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.82 E-value=0.034 Score=59.79 Aligned_cols=225 Identities=12% Similarity=0.018 Sum_probs=110.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~ 131 (524)
.+.-|...|+|+.|.++|.++ .....--..|-+.|+|++|.++-+++.. |... ..++...+.-+...|+
T Consensus 771 iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t-~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT-ISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcC--chhH-HHHHHHhHHhHHhhcc
Confidence 344444455555555555443 1111122334445555555554444322 2111 2455555666667777
Q ss_pred hHHHHHHHHH------HHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 132 LDDQIALLKH------KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 132 ~~eA~~~~~~------al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
|.+|.++|-. +++++. ..++.+....+.... .|+. .+.+..+|.-|...|+..+|...|-++-.
T Consensus 840 f~eaeqlyiti~~p~~aiqmyd-----k~~~~ddmirlv~k~----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 840 FAEAEQLYITIGEPDKAIQMYD-----KHGLDDDMIRLVEKH----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hhhhhheeEEccCchHHHHHHH-----hhCcchHHHHHHHHh----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 7777766632 222211 112333332222221 4444 46778888888888888888888877643
Q ss_pred hCCC------cHHHHH---H-------------HHHHHHcCCHHHHHHHHHHh--c---ccccCCCcCHHHHHHHHHHHH
Q 009850 205 IAPD------NNKMCN---L-------------GICLMKQGRIGEAKETLRRV--K---PAVADGPRGVDSHLKAYERAQ 257 (524)
Q Consensus 205 l~P~------~~~~~~---L-------------g~~~~~~G~~~eA~~~~~~a--~---~~~~~~~~~~~~A~~~~~~al 257 (524)
.... ...|.. + +..+.+.=--+.|+..+.+. + -.+.-+.+.++-|...-+-
T Consensus 911 ~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari-- 988 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI-- 988 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH--
Confidence 2211 000110 0 11111111112233333221 0 0000111222223222222
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCC
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 298 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~ 298 (524)
......+.++..++..+...|++++|-..|-.+++++..+-
T Consensus 989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 22345567899999999999999999999999998876543
No 249
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.81 E-value=0.16 Score=55.43 Aligned_cols=215 Identities=14% Similarity=0.034 Sum_probs=142.2
Q ss_pred ChHHHHHHHHHHHHc-----CChHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 009850 45 GDTPYVRAKNVQLVD-----KDPEKAIPLFWAAINA-----GDRVDSALKDMAIVMKQQN-----RAEEAIEAIKSLRSR 109 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~-----g~~~~Ai~~~~~al~~-----~p~~~~a~~~La~~~~~~g-----~~~eAi~~~~~al~~ 109 (524)
...+.+.+|.+++.- .|.+.|+.+|..+... .-.++.+.+.+|.+|.+.. ++..|+.+|.++...
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 445677888887654 6899999999999871 1125668889999999854 678899999999988
Q ss_pred CCCcHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 110 CSDQAQESLDNILLDLYKRCG---RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 110 ~p~~~~~~l~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
...++ .+.+|.+|.... ++..|..+|..|... ++..+.+.+|.+|
T Consensus 323 g~~~a----~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------------------------G~~~A~~~la~~y 370 (552)
T KOG1550|consen 323 GNPDA----QYLLGVLYETGTKERDYRRAFEYYSLAAKA----------------------------GHILAIYRLALCY 370 (552)
T ss_pred CCchH----HHHHHHHHHcCCccccHHHHHHHHHHHHHc----------------------------CChHHHHHHHHHH
Confidence 77664 255676666544 467899999888754 6788889999888
Q ss_pred HHc----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHhc----------------ccccCC---
Q 009850 187 MQQ----NNYIEAEDAYRRALSIAPDNNKMCNLGICLMK-QGRIGEAKETLRRVK----------------PAVADG--- 242 (524)
Q Consensus 187 ~~~----g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~-~G~~~eA~~~~~~a~----------------~~~~~~--- 242 (524)
..- .+...|..+|+++.+.++-.. ...++..+.. .+++..+...+.... +.....
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g~~~A-~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~ 449 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKGNPSA-AYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSR 449 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHccChhh-HHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccc
Confidence 753 478999999999998873221 2222222211 155555444443320 000000
Q ss_pred --CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHhhcccCC
Q 009850 243 --PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ----SRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 243 --~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----g~~~eAi~~~~~al~~~ 294 (524)
......+...+.++.. ..+..+...+|.+|..- .++..|...|..+-...
T Consensus 450 ~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 450 GVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred ccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 1233444444444443 45566778888877654 34788888888887766
No 250
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.76 E-value=0.37 Score=47.84 Aligned_cols=164 Identities=16% Similarity=0.054 Sum_probs=116.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ----NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR-- 128 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~----g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~-- 128 (524)
.....+++..|+..+..+-.. .+..+...++.+|..- .+..+|+.+|+.+.... .+ ...+.||.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~--~a~~~lg~~~~~G~ 123 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LA--EALFNLGLMYANGR 123 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cH--HHHHhHHHHHhcCC
Confidence 345678899999999888763 2337788888888764 36888999999554433 32 344667777765
Q ss_pred --cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH---HHHHHHHHHHcC-------CHHHHH
Q 009850 129 --CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL---LGNLGWALMQQN-------NYIEAE 196 (524)
Q Consensus 129 --~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a---~~~Lg~~~~~~g-------~~~eAi 196 (524)
..++.+|..+|+++.+. ++..+ .+.+|.+|..-. +...|+
T Consensus 124 gv~~d~~~A~~~~~~Aa~~----------------------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKL----------------------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred CcccCHHHHHHHHHHHHHc----------------------------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 44899999999999876 33334 788888887641 334799
Q ss_pred HHHHHHHhhCCCcHH-HHHHHHHHHHc----CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850 197 DAYRRALSIAPDNNK-MCNLGICLMKQ----GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG 271 (524)
Q Consensus 197 ~~~~~Al~l~P~~~~-~~~Lg~~~~~~----G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (524)
..|.++-... ++. .+++|.+|..- .++.+|..+|. ++.+... ..+.+.++
T Consensus 176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~---------------------~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYK---------------------KAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHH---------------------HHHHCCC--HHHHHHHH
Confidence 9999988766 445 77888777552 37778888887 5555544 67788888
Q ss_pred HHHHHcC
Q 009850 272 GDRVEQS 278 (524)
Q Consensus 272 ~~~~~~g 278 (524)
++...|
T Consensus 231 -~~~~~g 236 (292)
T COG0790 231 -LMYLNG 236 (292)
T ss_pred -HHHhcC
Confidence 666666
No 251
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.0014 Score=64.51 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=47.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhc
Q 009850 92 QQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV 171 (524)
Q Consensus 92 ~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 171 (524)
..|.++.|++.|..++.++|... .++...+.++..+++...|+.-+..++.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ei-------------------------- 177 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEI-------------------------- 177 (377)
T ss_pred cCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhcc--------------------------
Confidence 34455555555555555555554 34444455555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+|+...-|-..|.+...+|+|++|...+..+.+++
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 55555555555555555555555555555555554
No 252
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.00077 Score=66.34 Aligned_cols=87 Identities=20% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
...|.++.|++.|..++.+ +|..+..|...+.++.+++++..|+..|..+++++
T Consensus 125 ln~G~~~~ai~~~t~ai~l--------------------------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein 178 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--------------------------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN 178 (377)
T ss_pred hcCcchhhhhccccccccc--------------------------CCchhhhcccccceeeeccCCchhhhhhhhhhccC
Confidence 3578899999999999999 99999999999999999999999999999999999
Q ss_pred CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 207 PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 207 P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
|+... |-..|.+...+|+|++|..+++.+....
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 99998 8889999999999999999999875544
No 253
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.27 Score=50.95 Aligned_cols=165 Identities=18% Similarity=0.104 Sum_probs=115.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc---CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINA---GDR-------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-QAQESLD 119 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~---~p~-------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l~ 119 (524)
.+..+-+..|++.+|++....+.+. .|. .+..++.+|.-...-|.++.|...|..+.+.... +.+..+.
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4556677889999999988888764 343 3455777888888889999999999999887653 4445566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhcc-HhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQG-LAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
..++..|.+.|+-+.-.+.++. +.+.+ ..+.. .-....+++..|...+.++++.||...
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss-----------------q~l~a~~~~v~glfaf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS-----------------QRLEASILYVYGLFAFKQNDLNEAKRF 467 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH-----------------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6788889887775543333322 21110 00000 000135788889999999999999999
Q ss_pred HHHHHhhCCCc--H---H--HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 199 YRRALSIAPDN--N---K--MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 199 ~~~Al~l~P~~--~---~--~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+.+.++..... . . +..||.+....|+..++.....-+
T Consensus 468 l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 468 LRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 99999976211 1 1 456888889999999988877643
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.098 Score=53.44 Aligned_cols=170 Identities=12% Similarity=0.015 Sum_probs=109.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC-CcHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA----GDRVDSALKDMAIVMKQ---QNRAEEAIEAIKSLRSRCS-DQAQE 116 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~----~p~~~~a~~~La~~~~~---~g~~~eAi~~~~~al~~~p-~~~~~ 116 (524)
.++...++=..|....+|+.=+.+.+..-.. -++.....+.+|.++.+ .|+.++|+..+..++.... .++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~-- 217 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP-- 217 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh--
Confidence 3344556666777778888888777776655 45566778889999999 9999999999999655443 444
Q ss_pred HHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 117 SLDNILLDLYKRC---------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 117 ~l~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
..+..+|.+|... ...++|+.+|+++.++ +| +...-.|++.++.
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------------------------~~-~~Y~GIN~AtLL~ 270 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------------------------EP-DYYSGINAATLLM 270 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------------------------Cc-cccchHHHHHHHH
Confidence 6667777776432 2367888888888877 32 2223356666666
Q ss_pred HcCCHHHHHHHHHHHH--------hh---CCCc-HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 188 QQNNYIEAEDAYRRAL--------SI---APDN-NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al--------~l---~P~~-~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
..|.-.+...-.++.. +. .+.. -. +..++.+..-.|++++|+..++++....+..|
T Consensus 271 ~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 271 LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 6665333222222211 11 1111 11 45677888889999999999997655555544
No 255
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.66 E-value=0.044 Score=58.97 Aligned_cols=191 Identities=13% Similarity=0.048 Sum_probs=102.3
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Q 009850 51 RAKNVQLVDKD-PEKAIPLFWAAINAGDRVDS-ALKDMAIVMKQQNRAEEAIEAIKSLRSRCS----------------- 111 (524)
Q Consensus 51 ~lg~~~~~~g~-~~~Ai~~~~~al~~~p~~~~-a~~~La~~~~~~g~~~eAi~~~~~al~~~p----------------- 111 (524)
.-+.-++++|+ |.+|+++.+-+. |.... .-...|.-+.+.|+++.|+.+|-.+-.+-.
T Consensus 678 dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~i 754 (1636)
T KOG3616|consen 678 DKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISI 754 (1636)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhH
Confidence 34556677766 567777665543 33222 223456777778888888877755421100
Q ss_pred ------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850 112 ------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA 185 (524)
Q Consensus 112 ------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~ 185 (524)
.......+-..++-|...|+|+-|.++|.++-. ...--..
T Consensus 755 ldniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------------------------~~dai~m 800 (1636)
T KOG3616|consen 755 LDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL----------------------------------FKDAIDM 800 (1636)
T ss_pred HHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch----------------------------------hHHHHHH
Confidence 000001222334444455555555555544321 1222344
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH--------
Q 009850 186 LMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER-------- 255 (524)
Q Consensus 186 ~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~-------- 255 (524)
|-+.|+|++|...-.+.. .|+... |...+.-+-+.|+|.+|.+.|-.+ +..+.|+..|.+
T Consensus 801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti--------~~p~~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI--------GEPDKAIQMYDKHGLDDDMI 870 (1636)
T ss_pred HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc--------cCchHHHHHHHhhCcchHHH
Confidence 566777877777665554 355444 667777788888888888777543 122233333322
Q ss_pred --HHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHh
Q 009850 256 --AQQMLKDL-ESEMMNKGGDRVEQSRLFDAFLGSS 288 (524)
Q Consensus 256 --al~~~p~~-~~a~~~lg~~~~~~g~~~eAi~~~~ 288 (524)
.-...++. .+.+..+|.-|...|++..|...|-
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 11223332 3466777777777777777766543
No 256
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0081 Score=63.23 Aligned_cols=110 Identities=22% Similarity=0.079 Sum_probs=87.2
Q ss_pred CCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850 172 EQEATRLLGN--LGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 248 (524)
Q Consensus 172 ~p~~~~a~~~--Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~ 248 (524)
+|.++..+.. +...+...+....+...+..++..+|++.. +.+||.+....|....+...+.+
T Consensus 61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~-------------- 126 (620)
T COG3914 61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE-------------- 126 (620)
T ss_pred CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH--------------
Confidence 6666655332 577788889999999999999999999988 99999999888888777777664
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 249 HLKAYERAQQMLKDLESEMMNK------GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 249 A~~~~~~al~~~p~~~~a~~~l------g~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.+....|.+......+ |.....+|+..++.....++....|.+...+
T Consensus 127 ------~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 127 ------IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred ------HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 4555666666554444 8888888999999999999999999887765
No 257
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.58 E-value=0.0041 Score=39.94 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555444
No 258
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.55 E-value=0.016 Score=46.78 Aligned_cols=80 Identities=24% Similarity=0.234 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY 144 (524)
Q Consensus 65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~ 144 (524)
.+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++.........+..++..+|.-+.-...|++-+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999998652224555666777777887776667776553
No 259
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.53 E-value=0.38 Score=48.72 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=112.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKD------------PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK 104 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~------------~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~ 104 (524)
..+...|.+.++|..+....-..-. .+.-+.+|++||+.+|++...+..+-.+..+..+.++..+-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556778888899888765544322 5677889999999999999999988888889999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850 105 SLRSRCSDQAQESLDNILLDLYK---RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN 181 (524)
Q Consensus 105 ~al~~~p~~~~~~l~~~lg~~~~---~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~ 181 (524)
+++..+|++. .+|..+.+... ..-.++.....|.+++........-......... ..+-.-..++..
T Consensus 90 ~~l~~~~~~~--~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~--------~~e~~~l~v~~r 159 (321)
T PF08424_consen 90 ELLFKNPGSP--ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP--------ELEEFMLYVFLR 159 (321)
T ss_pred HHHHHCCCCh--HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchh--------hHHHHHHHHHHH
Confidence 9999999886 55554443322 2345789999999998763111110000000000 000112346677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 182 LGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 182 Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+...+.+.|..+.|+..++..++++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888889999999999999999976
No 260
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.13 Score=53.18 Aligned_cols=199 Identities=15% Similarity=0.090 Sum_probs=133.4
Q ss_pred HcCChHHHHHHHHHHHHc------CCCcHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc-----HH
Q 009850 58 VDKDPEKAIPLFWAAINA------GDRVDS--------ALKDMAIVMKQQNRAEEAIEAIKSLRSRC---SDQ-----AQ 115 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~------~p~~~~--------a~~~La~~~~~~g~~~eAi~~~~~al~~~---p~~-----~~ 115 (524)
..|-+++|.++-+++|.. .+.... .+..+..|-.-.|++.+|++.+..+.... |.. ..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 445566666666666654 121222 23456777778899999999888776654 431 11
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc--HHHHHHHHHHHHHcCCHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA--TRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~--~~a~~~Lg~~~~~~g~~~ 193 (524)
..++..+|.....-|.++.|...|..++++. +..+ +-+..+++..|.+.|+-+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-------------------------~~~dl~a~~nlnlAi~YL~~~~~e 421 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLT-------------------------ESIDLQAFCNLNLAISYLRIGDAE 421 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-------------------------hHHHHHHHHHHhHHHHHHHhccHH
Confidence 4577788877788899999999999998872 1112 335568899999977654
Q ss_pred HHHHHHHHHHhhCCCc----------HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC
Q 009850 194 EAEDAYRRALSIAPDN----------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 262 (524)
Q Consensus 194 eAi~~~~~Al~l~P~~----------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~ 262 (524)
. +|+-.-.+.|.+ .. ++..|...+.++++.||...+.+.+... .+.....-
T Consensus 422 d---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---------------naed~~rL 483 (629)
T KOG2300|consen 422 D---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---------------NAEDLNRL 483 (629)
T ss_pred H---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---------------chhhHHHH
Confidence 4 444333456664 11 5667888889999999999998754432 11112222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 263 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 263 ~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
.+-.+..+|.+..-.|+..++....+.+.+.....+.
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 2345677899999999999999988888777655554
No 261
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.42 E-value=0.0058 Score=38.78 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD 112 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~p~ 112 (524)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665554
No 262
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.40 E-value=0.074 Score=54.62 Aligned_cols=107 Identities=10% Similarity=-0.049 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY 253 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~ 253 (524)
.+++.....+.+.|-+..|.++.+-.+.++|. ++- .+.+-....+.++++--+..++...... +
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~-------------~ 170 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC-------------Y 170 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh-------------h
Confidence 35666778888999999999999999999999 666 6667777788899988888777532210 1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCH---------------HHHHHHHhhcccCCCCCCC
Q 009850 254 ERAQQMLKDLESEMMNKGGDRVEQSRL---------------FDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 254 ~~al~~~p~~~~a~~~lg~~~~~~g~~---------------~eAi~~~~~al~~~P~~~~ 299 (524)
..-+...|+ .-+..+.++...++. ++|.....+|+..-|....
T Consensus 171 ~~~~~~lPn---~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 171 RNWLSLLPN---FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred hhhhhhCcc---HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 111233444 447777777778777 7888888888877665444
No 263
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.36 E-value=0.0068 Score=38.43 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999988874
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.35 E-value=0.0062 Score=39.95 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
+|.+||.+|...|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999996644
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.32 E-value=0.87 Score=46.24 Aligned_cols=220 Identities=15% Similarity=0.009 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAG--------DRVDSALKDMAIVMKQQNRAEEAIEAIKSL------------ 106 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~a~~~La~~~~~~g~~~eAi~~~~~a------------ 106 (524)
+..+..+...+..|+++++..+..++...- +......+..-.-+..+.+.+++..+....
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~~ 109 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLLK 109 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 456667777779999999999988887641 122222222222222333444444443111
Q ss_pred -----HHhCCCc----------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 107 -----RSRCSDQ----------------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 107 -----l~~~p~~----------------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
+....++ .....+..++.+..+.|+++-|...+.++......
T Consensus 110 ~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----------- 178 (352)
T PF02259_consen 110 RWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----------- 178 (352)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc-----------
Confidence 0000111 01134445556666777777777766666544100
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-c--------------------------HH-
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-N--------------------------NK- 211 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~--------------------------~~- 211 (524)
.....+.+.+..+.++...|+..+|+..++..+..... . ..
T Consensus 179 -----------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T PF02259_consen 179 -----------SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKES 247 (352)
T ss_pred -----------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhh
Confidence 01124667788888899999999999998888872111 1 01
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL----------- 280 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------- 280 (524)
.-..+.++...|+|-... ... ......+.+++.|.++....|....+|+.+|..+...-..
T Consensus 248 ~~~~a~~~l~~a~w~~~~-------~~~-~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~ 319 (352)
T PF02259_consen 248 KELKAKAFLLLAKWLDEL-------YSK-LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQE 319 (352)
T ss_pred HHHHHHHHHHHHHHHHhh-------ccc-cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchh
Confidence 234556666666655554 011 2345667889999999999999999999998765443221
Q ss_pred ------HHHHHHHhhcccCCCC
Q 009850 281 ------FDAFLGSSSIWQPQPC 296 (524)
Q Consensus 281 ------~eAi~~~~~al~~~P~ 296 (524)
..|+.+|-+++...+.
T Consensus 320 ~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 320 DRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHHHHhhCCC
Confidence 3466777777777666
No 266
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.17 E-value=2.2 Score=45.12 Aligned_cols=72 Identities=10% Similarity=-0.037 Sum_probs=61.5
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
..+...|.+.++|+.|-.-+..+ -+++....|++.+...|..+.+|..........++|+.-..+|.+++..
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45677889999999888776655 8999999999999999999999999888888888999988888887653
No 267
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.24 Score=47.45 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=131.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChH-
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLD- 133 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~- 133 (524)
+.+...-..|+.+-..+|.++|.+...|...-.++..++ +..+-++++...+.-+|.+- .+|...-.+....|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY--QvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY--QVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHhcCccc
Confidence 345566788999999999999999999888888877765 67788899999999999885 56665555666677776
Q ss_pred HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H
Q 009850 134 DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-M 212 (524)
Q Consensus 134 eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~ 212 (524)
.-+++.+.++.. +..+-.+|...-++...-+.|+.-+.+..+.++.+--+.. |
T Consensus 131 rELef~~~~l~~--------------------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 131 RELEFTKLMLDD--------------------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred chHHHHHHHHhc--------------------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 667777777776 6777889999999999999999999999999988765554 5
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 009850 213 CNLGICLMK-QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE-QS 278 (524)
Q Consensus 213 ~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g 278 (524)
..+-.+... .|=.+++.- +.-+....+.+...|++..+|..|..++.. .|
T Consensus 185 N~Ryfvi~~~~~~~~~~~l----------------e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 185 NQRYFVITNTKGVISKAEL----------------ERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred heeeEEEEeccCCccHHHH----------------HHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 543333222 222221211 122344558899999999999998877765 44
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.04 E-value=0.013 Score=38.43 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
|.+||.+|..+|+|++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666443
No 269
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.01 E-value=0.57 Score=47.43 Aligned_cols=143 Identities=11% Similarity=0.023 Sum_probs=104.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850 67 PLFWAAINAGDRVDSALKDMAIVMKQQNR------------AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~------------~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e 134 (524)
..|.+.++.+|++.++|..+....-..-. .+.-+.+|++|++.+|++. .+...+.....+....++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHH
Confidence 45788889999999999998866555432 4677899999999999886 566666667777788888
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC----
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ---QNNYIEAEDAYRRALSIAP---- 207 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~---~g~~~eAi~~~~~Al~l~P---- 207 (524)
..+-+++++.. +|++...|..+-..... .-.+......|.+++..-.
T Consensus 84 l~~~we~~l~~--------------------------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 84 LAKKWEELLFK--------------------------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHHHH--------------------------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 88899999888 78888777665444333 2357777777777765311
Q ss_pred C---------c-----HH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 208 D---------N-----NK-MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 208 ~---------~-----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
. . .. +..+...+...|-.+.|+..++..++
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 0 0 11 34566667888999999999996543
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.95 E-value=0.3 Score=49.67 Aligned_cols=140 Identities=13% Similarity=0.091 Sum_probs=103.1
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc-----
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD----RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-SDQ----- 113 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p----~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-p~~----- 113 (524)
.....|...+.+....|+++.|...+.++...++ ..+...+..+.++...|+..+|+..++..+... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3445689999999999999999999999988652 256778888999999999999999999888721 100
Q ss_pred --------------------------HHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHhhccHhhhcccHHHHH
Q 009850 114 --------------------------AQESLDNILLDLYKRC------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR 161 (524)
Q Consensus 114 --------------------------~~~~l~~~lg~~~~~~------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~ 161 (524)
....++..+|...... +..++++..|+.++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~---------------- 287 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL---------------- 287 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh----------------
Confidence 1134455556555556 7777788888888877
Q ss_pred HHhHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCCc
Q 009850 162 SQGKKFQVSVEQEATRLLGNLGWALMQQNN-----------------YIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 162 ~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~-----------------~~eAi~~~~~Al~l~P~~ 209 (524)
+|....+|+.+|..+...=+ ...|+..|-+++...++.
T Consensus 288 ----------~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 288 ----------DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ----------ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 77777788888877654311 134777888888877763
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.92 E-value=0.5 Score=51.64 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHcC--
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-----NRAEEAIEAIKSLRSR---CSDQAQESLDNILLDLYKRCG-- 130 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-----g~~~eAi~~~~~al~~---~p~~~~~~l~~~lg~~~~~~g-- 130 (524)
+...|..+|+.+... .+..+...+|.+|..- .+.+.|+.+|+.+... .-...+....+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887654 5678888889888765 4899999999998772 000001134466788877643
Q ss_pred ---ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 009850 131 ---RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN---NYIEAEDAYRRALS 204 (524)
Q Consensus 131 ---~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~ 204 (524)
++..|..+|.++-.. +++.+.+.+|.++.... ++..|..+|..|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred ccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 677799999888766 67779999999998766 57899999999987
Q ss_pred hCCCcHH-HHHHHHHHHHc----CCHHHHHHHHHHh
Q 009850 205 IAPDNNK-MCNLGICLMKQ----GRIGEAKETLRRV 235 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~----G~~~eA~~~~~~a 235 (524)
. .+.. .+.+|.||..- -+...|..+|.++
T Consensus 357 ~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 357 A--GHILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred c--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 3 2334 77788887543 3677777777754
No 272
>PRK10941 hypothetical protein; Provisional
Probab=95.86 E-value=0.1 Score=51.18 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ 115 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~ 115 (524)
..++-.++.+.++++.|+.+.+..+...|+++.-+...|.+|.++|.+..|...++..++.+|+++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4467778899999999999999999999999999999999999999999999999999999999874
No 273
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.85 E-value=0.013 Score=35.81 Aligned_cols=33 Identities=39% Similarity=0.597 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
.+++.+|.++...|++++|+.+|+++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467899999999999999999999999888753
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.82 E-value=0.029 Score=59.03 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=91.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVD-SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG 130 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g 130 (524)
.|..+...|+...|+.++..|+...|... ..+.+||.++..-|-..+|-..+.+++.+....+ ..++.+|.+|..+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLALK 690 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHHh
Confidence 35556678999999999999999988643 3478999999999999999999999999997666 66788999999999
Q ss_pred ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
+.+.|++.|++++.+ +|+++.+-..|-.+-+
T Consensus 691 ~i~~a~~~~~~a~~~--------------------------~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 691 NISGALEAFRQALKL--------------------------TTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHHHHHHHHhc--------------------------CCCChhhHHHHHHHHH
Confidence 999999999999998 7888777766655544
No 275
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.78 E-value=0.3 Score=41.06 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=73.5
Q ss_pred HHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCcH----------H---HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 178 LLGNLGW--ALMQQNNYIEAEDAYRRALSIAPDNN----------K---MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 178 a~~~Lg~--~~~~~g~~~eAi~~~~~Al~l~P~~~----------~---~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
+|..|+. -....|-|++|...+++|+.....-| + +..|+.++..+|+|++++..-+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~-------- 80 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR-------- 80 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH--------
Confidence 4555544 45567899999999999998753321 1 45688899999999999888774
Q ss_pred CcCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 243 PRGVDSHLKAYERAQQMLKDLESE----MMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 243 ~~~~~~A~~~~~~al~~~p~~~~a----~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
++.+|++--+++.+.... .++.+..+...|+.++|+..|+.+-
T Consensus 81 ------aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 81 ------ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp ------HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 677888888888876654 4678999999999999999998764
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=0.34 Score=52.22 Aligned_cols=135 Identities=14% Similarity=0.041 Sum_probs=81.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850 53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA-IVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La-~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~ 131 (524)
+.+-.--|+|++|...|-.+=+ ..|| .++..+|+|-.-.++++..-.-..+.....++..+|..+.....
T Consensus 741 aei~~~~g~feeaek~yld~dr---------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADR---------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccch---------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3344445777777777754421 1222 35566777777777766544334444556788889999999999
Q ss_pred hHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 132 LDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
|++|.++|...-......-++.. ..+...+.+.+. -|++...+-.+|..+...|.-++|++.|-+
T Consensus 812 We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDTENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 99999999876544222222222 222222222222 366666777777777777777777766643
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.73 E-value=0.47 Score=48.80 Aligned_cols=153 Identities=16% Similarity=0.035 Sum_probs=106.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------C------------CCcH---HHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------------G------------DRVD---SALKDMA 87 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------------~------------p~~~---~a~~~La 87 (524)
..++..|...+++..++.++..+|++..|.+++++||-. + ++|- .+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778889999999999999999999999988888642 1 1122 2345566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHH
Q 009850 88 IVMKQQNRAEEAIEAIKSLRSRCSD-QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKK 166 (524)
Q Consensus 88 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~ 166 (524)
..+.+.|-+..|+++.+-++.++|. ++. .+...+-....+.++|+--+..++..........
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~---------------- 173 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW---------------- 173 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh----------------
Confidence 7788889999999999999999997 663 2223333334567788777776665443100000
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCcHH
Q 009850 167 FQVSVEQEATRLLGNLGWALMQQNNY---------------IEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 167 ~~~~~~p~~~~a~~~Lg~~~~~~g~~---------------~eAi~~~~~Al~l~P~~~~ 211 (524)
. ..-+..-+..+.+++..++- +.|...+.+|+...|.-..
T Consensus 174 --~---~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 174 --L---SLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred --h---hhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 0 00134667778888888888 8999999999998886544
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.63 E-value=2.6 Score=41.67 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=84.0
Q ss_pred HHHcCChHHHHHHHHHHHHcC----CCcH----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----C---C-----cH
Q 009850 56 QLVDKDPEKAIPLFWAAINAG----DRVD----SALKDMAIVMKQQN-RAEEAIEAIKSLRSRC----S---D-----QA 114 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~----p~~~----~a~~~La~~~~~~g-~~~eAi~~~~~al~~~----p---~-----~~ 114 (524)
...+|+++.|..++.++-... |+.. ..+++.|......+ ++++|..+++++.++- + . .-
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999987643 4332 34678888888899 9999999999998882 2 1 12
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850 115 QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE 194 (524)
Q Consensus 115 ~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e 194 (524)
+..+...++.+|...+.++...++.+ +++.. ....|+.+..+...-.++.+.++.++
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l----------------------~~e~~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALN-ALRLL----------------------ESEYGNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHH----------------------HHhCCCCcHHHHHHHHHHhccCChhH
Confidence 35667788888888887765444222 22220 00135555555444444444677777
Q ss_pred HHHHHHHHHhh
Q 009850 195 AEDAYRRALSI 205 (524)
Q Consensus 195 Ai~~~~~Al~l 205 (524)
+.+.+.+++.-
T Consensus 140 ~~~~L~~mi~~ 150 (278)
T PF08631_consen 140 YEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHh
Confidence 77777777764
No 279
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.61 E-value=0.75 Score=38.77 Aligned_cols=105 Identities=16% Similarity=0.043 Sum_probs=67.4
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 009850 81 SALKDMAIV--MKQQNRAEEAIEAIKSLRSRCSDQ----------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ 148 (524)
Q Consensus 81 ~a~~~La~~--~~~~g~~~eAi~~~~~al~~~p~~----------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 148 (524)
.+|..|+.. ...-|-|++|...+++++.....- ....++..|+..+..+|+|++++..-.++|...+.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 344544433 344577888888888887764311 11245556777788999999999888888876322
Q ss_pred cHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 149 GLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
--.+ +.+. ..+.++.+..+...|+.++|+..|+.+.+
T Consensus 88 RGEL-------------------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGEL-------------------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--T-------------------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccc-------------------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1111 2233 23557889999999999999999998865
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.45 E-value=0.25 Score=44.11 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
.....+..+-...++.+++...+...-.+.|+.++.-..-|.++...|+|.+|+..++.+....|..+. ..-.++.++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~--~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY--AKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH--HHHHHHHHH
Confidence 345667777788999999999999999999999999999999999999999999999999888888773 445567777
Q ss_pred HHcCChH
Q 009850 127 KRCGRLD 133 (524)
Q Consensus 127 ~~~g~~~ 133 (524)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 7777753
No 281
>PRK10941 hypothetical protein; Provisional
Probab=95.45 E-value=0.17 Score=49.58 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
..+.++-.+|.+.++++.|+.+.+.++.+.|+++. +--+|.+|.++|.+..|...++..+...|+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 56788889999999999999999999999999999 999999999999999999999954444433
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.38 E-value=4.8 Score=43.17 Aligned_cols=247 Identities=11% Similarity=0.055 Sum_probs=169.8
Q ss_pred HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHH-H
Q 009850 39 IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM-AIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-E 116 (524)
Q Consensus 39 ~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L-a~~~~~~g~~~eAi~~~~~al~~~p~~~~-~ 116 (524)
+...|.+-.-|-.-|..-.+.|..+.++..|++++..-|...+.|..+ +.+....|+.+.-...|++|......+.. .
T Consensus 72 L~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~ 151 (577)
T KOG1258|consen 72 LSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSD 151 (577)
T ss_pred HhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhcc
Confidence 356788888889999999999999999999999999999888887754 44444567777778888888887764421 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh-----------------------hhcc------------------
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA-----------------------FNGK------------------ 155 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~-----------------------~~~~------------------ 155 (524)
.+|-.+......++++..-...|++.++.....+. +.+.
T Consensus 152 ~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e 231 (577)
T KOG1258|consen 152 PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLE 231 (577)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhH
Confidence 34455455556677777777777777654300000 0000
Q ss_pred --------------cHHHHHHHhHH---------------------HHHh----------cCCCcHHHHHHHHHHHHHcC
Q 009850 156 --------------RTKTARSQGKK---------------------FQVS----------VEQEATRLLGNLGWALMQQN 190 (524)
Q Consensus 156 --------------~~~~a~~~~~~---------------------~~~~----------~~p~~~~a~~~Lg~~~~~~g 190 (524)
..+........ ++.. +++.....|......-...|
T Consensus 232 ~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g 311 (577)
T KOG1258|consen 232 ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG 311 (577)
T ss_pred HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence 00000000000 0000 02233467777777778889
Q ss_pred CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------CcCHHHHHHHHHH
Q 009850 191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------PRGVDSHLKAYER 255 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------~~~~~~A~~~~~~ 255 (524)
+++...-.|++++---..+.. |...+.-....|+..-|-..+..+...+... .++.+.|...+++
T Consensus 312 ~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~ 391 (577)
T KOG1258|consen 312 DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQR 391 (577)
T ss_pred cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 999999999988877767777 8888888888888888888777764433222 1678888899999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009850 256 AQQMLKDLESEMMNKGGDRVEQSRLFDAFL 285 (524)
Q Consensus 256 al~~~p~~~~a~~~lg~~~~~~g~~~eAi~ 285 (524)
.....|+...+-.........+|..+.+..
T Consensus 392 i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 392 IESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 888889888887777778888888888873
No 283
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=2.5 Score=47.86 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS--ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL 123 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~--a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg 123 (524)
++....--..++..+-+.+-++++++.+-.+.-..+ .+.+|-.+-.-..+...-.+++++.-..+-++ .+
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~--------ia 1055 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPD--------IA 1055 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchh--------HH
Confidence 333333444555666666777777776543221111 11112111122234445555555543332222 13
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
.+....+-|++|...|++-- .+..+. .-..+......++.+....-+.+.+|..+|.+..+.|...+|++.|-+|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-~n~~A~---~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-MNVSAI---QVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-ccHHHH---HHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 33345566777777666421 100000 0011122222233333323456789999999999999999999998765
Q ss_pred hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcC------------HHHH----------------HHHHH
Q 009850 204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG------------VDSH----------------LKAYE 254 (524)
Q Consensus 204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~------------~~~A----------------~~~~~ 254 (524)
+++. |...-.+..+.|.|++-+.++.-+.....+..-+ +.+. -++|+
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence 5566 8888888889999999999988875544433210 0000 01111
Q ss_pred ----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850 255 ----RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 290 (524)
Q Consensus 255 ----~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~a 290 (524)
++.++.-....-|..|+..+..+|+|..|+..-++|
T Consensus 1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 112222223344667788888999999988876655
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.22 E-value=0.034 Score=33.84 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGD 77 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p 77 (524)
.|+.+|.++...|++++|+..|+++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555555555555555555555555544
No 285
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.12 E-value=0.14 Score=41.38 Aligned_cols=63 Identities=19% Similarity=0.062 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+|++..+.+.+|..+...|++++|++.+-.+++.+++... .-.+-.++..+|.-+.-...|++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 8999999999999999999999999999999998877633 55666777777776555555553
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=1.9 Score=38.95 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV--DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQESLDNILLD 124 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~--~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~l~~~lg~ 124 (524)
-|..+..+...+..++|+..|...-+-+-.. .-+.+..|.+..+.|+...|+.+|..+-.-.|.. ..-.....-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3455666677778888888887766554332 2345667888888888888888888876655422 11122233344
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
++...|-|++-....+..- ...+|--..+.-.||..-++.|++.+|...|.+...
T Consensus 141 lLvD~gsy~dV~srvepLa-------------------------~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLA-------------------------GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhcc-------------------------CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5566777777554443211 111344456777889889999999999999998877
Q ss_pred hCCCcHH-HHHHHHHH
Q 009850 205 IAPDNNK-MCNLGICL 219 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~ 219 (524)
+...+. ..+.+.+.
T Consensus 196 -Da~aprnirqRAq~m 210 (221)
T COG4649 196 -DAQAPRNIRQRAQIM 210 (221)
T ss_pred -cccCcHHHHHHHHHH
Confidence 333333 44444443
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.00 E-value=0.13 Score=36.92 Aligned_cols=35 Identities=23% Similarity=0.089 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ 115 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~ 115 (524)
+.++.+|..++++|+|++|..+.+.+++..|++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 45677788888888888888888888888887753
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.00 E-value=6.5 Score=44.16 Aligned_cols=188 Identities=13% Similarity=0.028 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---H
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDR---------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA---Q 115 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~---~ 115 (524)
.....+-......++.+|..+..++-..-+. ..+..-..|.+....|+.++|+++.+.++..-|.+. .
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 3444556677788999999988887764332 123334567888889999999999999998888542 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--Hh-------------hhcc---cHHHHHHHhHHHH--HhcCCCc
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQG--LA-------------FNGK---RTKTARSQGKKFQ--VSVEQEA 175 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~--~~-------------~~~~---~~~~a~~~~~~~~--~~~~p~~ 175 (524)
..+...+|.+..-.|++++|..+..++.++.... .. ...+ +.+....+..... ....|-+
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3566678888888999999999888887763111 00 0011 0111111111000 1113333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCcHH----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIA----PDNNK----MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.-.....+.++...-+++.+.......+++. |.... ++.|+.++...|+.++|...+...
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222333333332223666666666665543 33322 458999999999999999999875
No 289
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.94 E-value=0.22 Score=41.45 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSAL---KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~---~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
++..++..|++-+|+++.+..+...+++..+| ..-|.++.. .+...+..+. ...+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~--k~~yLl------ 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDV--KFRYLL------ 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchH--HHHHHH------
Confidence 34566677777777777777776666555332 222333322 2222222221 222333
Q ss_pred cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 129 CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
.++++|.++..+ .|..+..++.+|.-+-....|++++.-.+++|.+.
T Consensus 62 -----~sve~~s~a~~L--------------------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 -----GSVECFSRAVEL--------------------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred -----HhHHHHHHHhcc--------------------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 356677777777 78888888888888777778888888888888753
No 290
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.94 E-value=4.1 Score=43.20 Aligned_cols=175 Identities=10% Similarity=-0.012 Sum_probs=112.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcC---CHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKD--------------PEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQN---RAEEA 99 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~--------------~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g---~~~eA 99 (524)
.+..++.+++.|+.....+...++ -+++..+|+.++..-. .+...++.++.--...- +++.-
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhh
Confidence 556678888889887777776666 7788888888876432 23333444443222222 35666
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850 100 IEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL 179 (524)
Q Consensus 100 i~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~ 179 (524)
..++++++.+...++. .++..+...-.+..-...|...|.++-+.. ..+.+.-+.
T Consensus 351 ~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~------------------------r~~hhVfVa 405 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDK------------------------RTRHHVFVA 405 (656)
T ss_pred HHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhcc------------------------CCcchhhHH
Confidence 7777777776543321 223333333445555677777777765430 012222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~ 238 (524)
..+-. |.-+++.+-|...|+-.+...++.+. -......+..+|+-..|...|+++++.
T Consensus 406 ~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 406 AALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 22222 44579999999999999999999999 445667778899999999999998766
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.90 E-value=0.44 Score=42.55 Aligned_cols=121 Identities=17% Similarity=0.066 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
...+..+..+-...++.+++...+..+-.+.|..+ .+...-|.++...|+|.+|+..|+.+...
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~--e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-------------- 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP--ELDLFDGWLHIVRGDWDDALRLLRELEER-------------- 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHhcc--------------
Confidence 34566777777888999999999999999999987 55566788899999999999999998766
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHH
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKE 230 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~ 230 (524)
.|..+.+--.++.|+..+|+.+= ..+-.++++..+ ++.-..+...+....+...|..
T Consensus 74 ------------~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 74 ------------APGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLARADLEPAHE 130 (160)
T ss_pred ------------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhccccchhh
Confidence 67888888899999988887531 112233444333 3333334444444444444444
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.88 E-value=0.5 Score=43.37 Aligned_cols=103 Identities=21% Similarity=0.208 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
..++..+|..|.+.|++++|++.|.++........+ ..++..+..+....|++.....++.++-.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~----------- 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE----------- 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-----------
Confidence 356889999999999999999999998887655432 45666777778888999999998888876621
Q ss_pred HHHHHhHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 159 TARSQGKKFQVSVEQEAT----RLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~----~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
.+++. .....-|..++..++|.+|...|-.++.-.
T Consensus 105 -------------~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 105 -------------KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -------------ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 12222 133344666777788888888887776544
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.86 E-value=0.59 Score=42.90 Aligned_cols=99 Identities=13% Similarity=0.016 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~ 251 (524)
..++..+|..|.+.|++++|+++|.++......... +.++..+.+..|++.....++.++....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~------------ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI------------ 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH------------
Confidence 468899999999999999999999998886544333 6788888999999999999999763221
Q ss_pred HHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 252 AYERAQQMLKDLES----EMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 252 ~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
....+.. ....-|..++..++|.+|-..|-.+..-
T Consensus 104 -------~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 104 -------EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred -------hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 1111121 2344477888899999999988776543
No 294
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.85 E-value=0.8 Score=43.42 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850 93 QNRAEEAIEAIKSLRSRC-----SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF 167 (524)
Q Consensus 93 ~g~~~eAi~~~~~al~~~-----p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~ 167 (524)
...+++|++.|.-|+-.. +....+.++..++.+|...|+.+....++++|+........
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~---------------- 153 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE---------------- 153 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH----------------
Confidence 346777777777654432 12223567788899999999988777778777776322221
Q ss_pred HHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH--HHHHHHH
Q 009850 168 QVSVEQ----EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN--KMCNLGI 217 (524)
Q Consensus 168 ~~~~~p----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~--~~~~Lg~ 217 (524)
....| +...+.+.+|.+..+.|++++|..+|.+++....... .+.++|.
T Consensus 154 -~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 154 -NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred -hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 11122 2256889999999999999999999999998544333 2555544
No 295
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.85 E-value=0.091 Score=51.28 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=62.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
..+.-..+.|+.++|..+|+.++.+ .|.+++++..+|......++.-+|-.+|-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------------------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------------------------APTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------------------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 3344456789999999999999999 99999999999999999999999999999
Q ss_pred HHHhhCCCcHH-HHHHHH
Q 009850 201 RALSIAPDNNK-MCNLGI 217 (524)
Q Consensus 201 ~Al~l~P~~~~-~~~Lg~ 217 (524)
+|+.++|.+.. +.|.+.
T Consensus 175 ~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 175 KALTISPGNSEALVNRAR 192 (472)
T ss_pred eeeeeCCCchHHHhhhhc
Confidence 99999999987 666554
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.82 E-value=5.5 Score=42.73 Aligned_cols=148 Identities=9% Similarity=-0.070 Sum_probs=109.2
Q ss_pred HHHcCChHHHHHHHHHHHHc-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 56 QLVDKDPEKAIPLFWAAINA-----GD---RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~-----~p---~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
+...-...+.+..|+..++. .| ..-..|......-...|+++...-.|++++--..... ..|..++....
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~--efWiky~~~m~ 342 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD--EFWIKYARWME 342 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH--HHHHHHHHHHH
Confidence 34444555666666666653 23 3345566777777888999999999999887766655 56677777777
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
..|+.+-|-..+.++.++. .|..+.++..-+.+-...|++..|...|+...+--|
T Consensus 343 ~~~~~~~~~~~~~~~~~i~-------------------------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIH-------------------------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred HcCchhHHHHHHHhhhhhc-------------------------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 7899888888888887762 466777888888888889999999999999998778
Q ss_pred CcHH-HHHHHHHHHHcCCHHHHHH
Q 009850 208 DNNK-MCNLGICLMKQGRIGEAKE 230 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~eA~~ 230 (524)
.... -..-.....++|+.+.+..
T Consensus 398 g~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 398 GLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred chhhhHHHHHhHHHHhcchhhhhH
Confidence 7766 3444556667788887774
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.81 E-value=0.24 Score=46.97 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=64.9
Q ss_pred HcCChHHHHHHHHHHHHc----C-CC--cHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCC--c--HHHHHH
Q 009850 58 VDKDPEKAIPLFWAAINA----G-DR--VDSALKDMAIVMKQQNRAE-------EAIEAIKSLRSRCSD--Q--AQESLD 119 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~----~-p~--~~~a~~~La~~~~~~g~~~-------eAi~~~~~al~~~p~--~--~~~~l~ 119 (524)
....+++|+..|.-|+-. . +. -+..+..+|++|..+|+.+ .|++.|.+++..... . ....+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 455788888888877753 2 22 2456778899999999954 466666666655432 1 224688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+.+|.++.+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 89999999999999999999999876
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.81 E-value=0.23 Score=41.36 Aligned_cols=44 Identities=14% Similarity=0.019 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY 144 (524)
Q Consensus 99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~ 144 (524)
|++.|.++..+.|..+ ...+.+|.-+.....|+++..-.++++.
T Consensus 63 sve~~s~a~~Lsp~~A--~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSA--HSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHH--HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5677777777777764 4445555444334445555555555443
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.80 E-value=3.6 Score=40.61 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=109.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCcH--HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850 90 MKQQNRAEEAIEAIKSLRSRC----SDQA--QESLDNILLDLYKRCG-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARS 162 (524)
Q Consensus 90 ~~~~g~~~eAi~~~~~al~~~----p~~~--~~~l~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~ 162 (524)
....|+++.|..++.++-... |+.. .....+..|......+ ++++|..+++++.++........
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~--------- 73 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD--------- 73 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc---------
Confidence 357899999999999976654 3322 1456677888888899 99999999999998832210000
Q ss_pred HhHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 163 QGKKFQVSVEQEA----TRLLGNLGWALMQQNNYI---EAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 163 ~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g~~~---eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
...|+. ..++..++.+|...+.++ +|....+.+-.-.|+.+. +...-.++.+.++.+++.+.+.+
T Consensus 74 -------~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 74 -------KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred -------ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 001222 357788999999888754 455566666666787777 43333344447999999999998
Q ss_pred hcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850 235 VKPAVADGPRGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 235 a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 264 (524)
...........++.++..+.+..+..|..+
T Consensus 147 mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a 176 (278)
T PF08631_consen 147 MIRSVDHSESNFDSILHHIKQLAEKSPELA 176 (278)
T ss_pred HHHhcccccchHHHHHHHHHHHHhhCcHHH
Confidence 877665555677777777777777776543
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.77 E-value=0.13 Score=53.12 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=96.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e 134 (524)
.....|+...|-.-+..+++..|.++......+.++..+|.|+.|...+.-+-..-..-. .....+......+|++++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHHHHHhhhchhhHHH
Confidence 346789999999999999999999999999999999999999999988876544332211 233444555678899999
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
|...-.-.+.- .-+++++..--+.....+|-+++|..++++.+.++|....
T Consensus 376 a~s~a~~~l~~--------------------------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 376 ALSTAEMMLSN--------------------------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHhcc--------------------------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 98776655433 3344555555555556778899999999999999887644
No 301
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=2.6 Score=44.58 Aligned_cols=237 Identities=13% Similarity=0.009 Sum_probs=135.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD 112 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~ 112 (524)
...+..|.++...+..+..+...|+.+.|+..+...+. +. ..-.++.+|.++.-+.+|..|...+........-
T Consensus 258 ~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 258 KYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred HHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 34456778877788889999999998888888888776 22 2234667888999999999999999988777642
Q ss_pred cHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHHHHhh---ccHhhhcccHHHHHHHhHHHHHhcCCCcHHH--H
Q 009850 113 QAQESLDNILLDLYK--------RCGRLDDQIALLKHKLYLIQ---QGLAFNGKRTKTARSQGKKFQVSVEQEATRL--L 179 (524)
Q Consensus 113 ~~~~~l~~~lg~~~~--------~~g~~~eA~~~~~~al~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a--~ 179 (524)
+ +....+..|.++. ..|+-+.|-.+++....+.. .++.+.......+..+..... .++..+.+ +
T Consensus 336 S-~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~--~~~~~~la~P~ 412 (546)
T KOG3783|consen 336 S-HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP--LNASILLASPY 412 (546)
T ss_pred h-HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--ccccccccchH
Confidence 2 1122222333332 23455666555555544321 222222211122222211110 01111111 2
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHH---hh-CCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850 180 GNLGWALMQ--QNNYIEAEDAYRRAL---SI-APDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251 (524)
Q Consensus 180 ~~Lg~~~~~--~g~~~eAi~~~~~Al---~l-~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~ 251 (524)
+.+..++.. .....+.. -++..+ .. ++++.- +..+|.++..+|+-..|..+|..+....
T Consensus 413 ~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e------------ 479 (546)
T KOG3783|consen 413 YELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE------------ 479 (546)
T ss_pred HHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Confidence 333333322 12223333 111111 12 233332 6779999999999999999999653221
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCC-HHHHHHHHhhcccCC
Q 009850 252 AYERAQQMLK-DLESEMMNKGGDRVEQSR-LFDAFLGSSSIWQPQ 294 (524)
Q Consensus 252 ~~~~al~~~p-~~~~a~~~lg~~~~~~g~-~~eAi~~~~~al~~~ 294 (524)
.....++ -.+.+++.+|..|..+|. ..++...+.+|-.-.
T Consensus 480 ---~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 480 ---SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred ---HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 1111111 245789999999999998 899998888876544
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.56 E-value=6.4 Score=44.21 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q-----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN 153 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~-----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~ 153 (524)
......+.......++++|..++.++...-+. . .........+.+....|+++.|+...+.++...+.+.
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--- 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--- 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc---
Confidence 33445677788889999999998887665543 1 1223334556667788999999999999887622111
Q ss_pred cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----H---HHHHHHHHHHcCC--
Q 009850 154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN----K---MCNLGICLMKQGR-- 224 (524)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~----~---~~~Lg~~~~~~G~-- 224 (524)
.-....++..+|.+.+-.|++++|..+.+++.++...+. . .+..+.++..+|+
T Consensus 493 ------------------~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 493 ------------------YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred ------------------chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 111245778899999999999999999999998754332 2 3456888889994
Q ss_pred HHHHHHHHHHhcccccCCC-----------------cCHHHHH----HHHHHHHHhCCCCH--H-HHHHHHHHHHHcCCH
Q 009850 225 IGEAKETLRRVKPAVADGP-----------------RGVDSHL----KAYERAQQMLKDLE--S-EMMNKGGDRVEQSRL 280 (524)
Q Consensus 225 ~~eA~~~~~~a~~~~~~~~-----------------~~~~~A~----~~~~~al~~~p~~~--~-a~~~lg~~~~~~g~~ 280 (524)
+.+....|........... .+.+.+. ..+.-.....|..- . +.+.++.++...|++
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 3344444444322211111 1112111 11222222222222 2 224789999999999
Q ss_pred HHHHHHHhhcc
Q 009850 281 FDAFLGSSSIW 291 (524)
Q Consensus 281 ~eAi~~~~~al 291 (524)
++|........
T Consensus 635 ~~A~~~l~~~~ 645 (894)
T COG2909 635 DKALAQLDELE 645 (894)
T ss_pred HHHHHHHHHHH
Confidence 99988765444
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.49 E-value=0.086 Score=35.13 Aligned_cols=29 Identities=38% Similarity=0.378 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47788999999999999999999998875
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.30 E-value=1.3 Score=47.96 Aligned_cols=183 Identities=14% Similarity=0.034 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----------HHHHHHHcCC
Q 009850 62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI----------LLDLYKRCGR 131 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~----------lg~~~~~~g~ 131 (524)
.++|++. ++.+|+ +..|..+|......-.++-|...|-++-.... ..+-.. .+.+-.--|+
T Consensus 679 ledA~qf----iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G----ik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQF----IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAG----IKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHH----HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccc----hhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 4455443 344564 78888888877776677777766655422111 011111 1222233488
Q ss_pred hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhc----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV----EQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~----~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+++|.+.|-.+-+.+ ....+..+.. .+.+-+++.. +.++ -.++.++|..+..+..|++|.++|...-.
T Consensus 750 feeaek~yld~drrD-LAielr~klg----DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD-LAIELRKKLG----DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhHhhhhhhccchhh-hhHHHHHhhh----hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888886553221 0000000000 0000001000 1111 34666666666666666666666654321
Q ss_pred hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850 205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 284 (524)
Q Consensus 205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi 284 (524)
.-++..|++.+.+|++- +......|++...+-.+|..+...|.-++|+
T Consensus 825 -------~e~~~ecly~le~f~~L-------------------------E~la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 825 -------TENQIECLYRLELFGEL-------------------------EVLARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred -------hHhHHHHHHHHHhhhhH-------------------------HHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 23345555555555442 2344456677777777888888888888888
Q ss_pred HHHhhc
Q 009850 285 LGSSSI 290 (524)
Q Consensus 285 ~~~~~a 290 (524)
.+|-+.
T Consensus 873 ~a~Lr~ 878 (1189)
T KOG2041|consen 873 EAYLRR 878 (1189)
T ss_pred HHHHhc
Confidence 876543
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.29 E-value=1.8 Score=44.75 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=49.7
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 176 TRLLGNL--GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 176 ~~a~~~L--g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.+.-+.| |..++..|+|.++.-+-.-..+++| .+. +-.+|.|+....+|++|..++...
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3444444 4557889999999999999999999 445 889999999999999999999965
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.16 E-value=0.23 Score=35.64 Aligned_cols=42 Identities=12% Similarity=-0.143 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIV 89 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~ 89 (524)
-++.+|..+++.|+|++|..+.+.+++.+|++..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999887655444
No 307
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=3.2 Score=44.38 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCcH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRR-ALSIAPDNN 210 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~l~P~~~ 210 (524)
+|.+..+..+||......|....+...+.+ +....|++.
T Consensus 97 ~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 97 NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA 136 (620)
T ss_pred CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence 444444555555444444444333333333 444444443
No 308
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.56 E-value=0.21 Score=48.84 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
.+.+.-....|+.++|..+|..|+.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34555667889999999999999999999999999999999999999999999999999999875
No 309
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.52 E-value=0.76 Score=48.01 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH
Q 009850 99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL 178 (524)
Q Consensus 99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a 178 (524)
-...|+.+....+.+. .+|........+.+.+.+--..|.+++.. +|++++.
T Consensus 90 Iv~lyr~at~rf~~D~--~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------------------------Hp~~~dL 141 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDV--KLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------------------------HPNNPDL 141 (568)
T ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHHHh--------------------------CCCCchh
Confidence 3456666666666665 55555555445555566766777777766 6777777
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHH
Q 009850 179 LGNLGWALMQQNN-YIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 179 ~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~ 211 (524)
|..-+...+.-+. .+.|...|.++|+.+|+++.
T Consensus 142 WI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 142 WIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred HHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 7777666666554 67777777777777777766
No 310
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.46 E-value=0.099 Score=49.06 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=46.8
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
...++.+.|.+.|.+++.+ -|+....|+.+|....+.|+++.|...|++.++++
T Consensus 6 ~~~~D~~aaaely~qal~l--------------------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALEL--------------------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhc--------------------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567778888888888877 67788888888888888888888888888888888
Q ss_pred CCcHH
Q 009850 207 PDNNK 211 (524)
Q Consensus 207 P~~~~ 211 (524)
|++..
T Consensus 60 p~D~~ 64 (287)
T COG4976 60 PEDHG 64 (287)
T ss_pred ccccc
Confidence 87643
No 311
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.40 E-value=8.1 Score=38.54 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHcCCHHHHHHHHHHhcc-------------------
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLMKQGRIGEAKETLRRVKP------------------- 237 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a~~------------------- 237 (524)
..|+.|..++|+..+|++.++...+-.|-... +-||-.++.++.-|.+-...+.+...
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTR 358 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 45677777777777777777777766663322 34555555554444433333332210
Q ss_pred -----cccCCC--c----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850 238 -----AVADGP--R----GVDSHLKAYERAQQMLKDLESEMMNKG 271 (524)
Q Consensus 238 -----~~~~~~--~----~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (524)
..++.. . .--.|++...++.+.+|..+..+..+-
T Consensus 359 AVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 359 AVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 011111 1 112367788888888888877665553
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.19 E-value=0.14 Score=48.04 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 54 NVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 54 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
......++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345778999999999999999999999999999999999999999999999999999976
No 313
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=3 Score=42.58 Aligned_cols=144 Identities=19% Similarity=0.158 Sum_probs=100.4
Q ss_pred hHHHHHH--HHHHHHcCChHHHHHHHHHHHHc----C-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 009850 46 DTPYVRA--KNVQLVDKDPEKAIPLFWAAINA----G-----DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC---- 110 (524)
Q Consensus 46 ~~~~~~l--g~~~~~~g~~~~Ai~~~~~al~~----~-----p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~---- 110 (524)
.++|..+ ...++.+.++.+|..+-+..+.. + --.+..|+.+..+|...|+...-...+...+...
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 3445433 33345568999999888776643 1 1134567888888888998766655555544432
Q ss_pred CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850 111 SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN 190 (524)
Q Consensus 111 p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g 190 (524)
.......+.+.+...|...+.|+.|.....+..--. ...+...+..++.+|.+..-++
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe----------------------~~snne~ARY~yY~GrIkaiql 261 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE----------------------AASNNEWARYLYYLGRIKAIQL 261 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----------------------ccccHHHHHHHHHHhhHHHhhc
Confidence 233445777888899999999999988877664210 0001233667888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHH
Q 009850 191 NYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+|..|.++|-+|+...|.+..
T Consensus 262 dYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 262 DYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred chhHHHHHHHHHHHhCcchhh
Confidence 999999999999999998644
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.15 E-value=2.7 Score=40.63 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=114.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----DQAQESLDNILLDLYK 127 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~l~~~lg~~~~ 127 (524)
+...++++|+..|++++++.+.-. .++..+..+++++|+|++-+..|.+.+..-. +... ...+...+.-.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE-KsIN~IlDyiS 116 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE-KSINSILDYIS 116 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHh
Confidence 345689999999999999987654 4567788899999999999998888665321 1111 11122222222
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL----GNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~----~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
...+.+--..+|+..+... .+..+-..| ..||.+|+..|.|..-...+++.-
T Consensus 117 tS~~m~LLQ~FYeTTL~AL------------------------kdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDAL------------------------KDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhhHHHHHHHHHHHHHH------------------------HhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 2333343344444443320 022232233 468999999999988888877765
Q ss_pred hhCCCc-----H-------H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH-----
Q 009850 204 SIAPDN-----N-------K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES----- 265 (524)
Q Consensus 204 ~l~P~~-----~-------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----- 265 (524)
...... . . |..--..|..+.+...-...|+++ +......+.
T Consensus 173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa---------------------lhiKSAIPHPlImG 231 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA---------------------LHIKSAIPHPLIMG 231 (440)
T ss_pred HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH---------------------HHhhccCCchHHHh
Confidence 532111 0 1 222233455555555555566644 333221111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 266 -EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 266 -a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..-.=|..+.+.|++++|-..|-.|++.....+.
T Consensus 232 vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 232 VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred HHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 1112256788889999999988888876544443
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.07 E-value=0.22 Score=33.04 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555555555555555555555555543
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.04 E-value=1.3 Score=39.00 Aligned_cols=82 Identities=13% Similarity=0.037 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
...+.......++++++...+...--+.|+.++.-..-|.++...|+|.+|+..++......+..+. ..-.++.++..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~--~kAL~A~CL~a 90 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY--GKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH--HHHHHHHHHHh
Confidence 3444455566999999999999988899999999999999999999999999999999888777663 33455666677
Q ss_pred cCCh
Q 009850 129 CGRL 132 (524)
Q Consensus 129 ~g~~ 132 (524)
+|+.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 7764
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.83 E-value=1.5 Score=38.71 Aligned_cols=73 Identities=29% Similarity=0.311 Sum_probs=57.8
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
..++.+++...+...--+ .|+.+.+-..-|++++..|+|.+|+..|+...+-.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--------------------------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--------------------------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--------------------------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 467777777766644434 788888889999999999999999999999988777
Q ss_pred CcHH-HHHHHHHHHHcCCHH
Q 009850 208 DNNK-MCNLGICLMKQGRIG 226 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~ 226 (524)
..+. .-.++.|+.-+|+.+
T Consensus 76 ~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CchHHHHHHHHHHHhcCChH
Confidence 7666 667888888888743
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.75 E-value=0.66 Score=48.12 Aligned_cols=126 Identities=14% Similarity=0.031 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL 250 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~ 250 (524)
.|.++......+.+...+|+|++|...+..+-.+-.. +...-.+-..+..+|++++|...-+-.+...
T Consensus 319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e----------- 387 (831)
T PRK15180 319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE----------- 387 (831)
T ss_pred CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc-----------
Confidence 5777777777888888888888888877766554332 2333334556678888888877766433222
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCccccccccccccccccccccc
Q 009850 251 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDS 320 (524)
Q Consensus 251 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~~ 320 (524)
-+.++...--+..-..+|-++++...+++.+.++|.....- .+.+..-|-+.|.+.|+
T Consensus 388 ----------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~--v~~~~~~~~~~~~~~~~ 445 (831)
T PRK15180 388 ----------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW--VNFLSSTQYFNDGNAFS 445 (831)
T ss_pred ----------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc--eeeeccceeccCcchHH
Confidence 22333332333344556778888999999998888765532 14666667777777764
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.46 E-value=1.4 Score=46.20 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 009850 64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR-LDDQIALLKHK 142 (524)
Q Consensus 64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~-~~eA~~~~~~a 142 (524)
.-...|+.|+...+.+...|........+.+.+.+--..|.+++..+|+++ .+|..-+.-.+.-+. .+.|...|.++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445688999999998999999988888888889999999999999999987 566555544445554 88999999999
Q ss_pred HHHhhccHh
Q 009850 143 LYLIQQGLA 151 (524)
Q Consensus 143 l~l~~~~~~ 151 (524)
++.++....
T Consensus 167 LR~npdsp~ 175 (568)
T KOG2396|consen 167 LRFNPDSPK 175 (568)
T ss_pred hhcCCCChH
Confidence 998544333
No 320
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.37 E-value=0.95 Score=52.48 Aligned_cols=168 Identities=14% Similarity=0.025 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCChHHHHH------HHHHHH-HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHH-
Q 009850 49 YVRAKNVQLVDKDPEKAIP------LFWAAI-NAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----DQAQ- 115 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~------~~~~al-~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----~~~~- 115 (524)
.+..|......|.+.+|.+ .+.... .+.|+....+..|+.++.++|++++|+..-.++.-... +.+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4566777777888887777 555333 34789999999999999999999999999887655432 1111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
...+..++......++...|+..+.++..+...... ...|.-+....+++.++...++++.|
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g------------------e~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG------------------EDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC------------------CCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 234445566667778888899888888776311110 01466677778999999999999999
Q ss_pred HHHHHHHHhhCCCc-----HH----HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 196 EDAYRRALSIAPDN-----NK----MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 196 i~~~~~Al~l~P~~-----~~----~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+.+.+.|+...-.. .. +..++..+...|++..|....+.
T Consensus 1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 99999999854322 11 44555555566666665555553
No 321
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.29 E-value=0.36 Score=50.58 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE 254 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~ 254 (524)
.+.+..-|+-.+..+.+..|+..|.+++...|+... +++.+.++++.+=...+...+ ....
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~Al------------------rDch 435 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLAL------------------RDCH 435 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHH------------------HhHH
Confidence 344444455555566788999999999999999988 999999988865333322222 2233
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
.+++++|....+|+.|+.++.+++++.+|+.+...+....|.+..
T Consensus 436 ~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 436 VALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred hhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 888999999999999999999999999999998888777785443
No 322
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=20 Score=38.47 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=98.7
Q ss_pred cCChHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---------
Q 009850 59 DKDPEKAIPLFWAAINA------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-----CSD--------- 112 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-----~p~--------- 112 (524)
..-|++|...|.-+... .|.+.+.+..++.++..+|+.+-|..++++++=. +|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777777777664 5778899999999999999999998888886532 221
Q ss_pred -------cH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC-cHH-HHHHH
Q 009850 113 -------QA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE-ATR-LLGNL 182 (524)
Q Consensus 113 -------~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~-a~~~L 182 (524)
+- .+.+.+.....+.+.|.+.-|.++.+-.+.+ +|. ++- +.+.+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--------------------------dp~eDPl~~l~~I 384 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--------------------------DPSEDPLGILYLI 384 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------------------------CCcCCchhHHHHH
Confidence 10 1223333344556789999999999888887 676 543 44444
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-----hhCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHhccccc
Q 009850 183 GWALMQQNNYIEAEDAYRRAL-----SIAPDNNKMCNLGICLMKQGR---IGEAKETLRRVKPAVA 240 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al-----~l~P~~~~~~~Lg~~~~~~G~---~~eA~~~~~~a~~~~~ 240 (524)
-....+..+|+==|+.++..- ..-|+...-..+|..|..... -..|...+.+|...+|
T Consensus 385 D~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 385 DIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 445556677776666666652 333443333445555555544 3456666665544443
No 323
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.82 E-value=0.91 Score=36.83 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=48.6
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
.+.|+|.+|++.+.+............. .-....++.++|.++...|++++|+..+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~-----------------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSS-----------------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchh-----------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4789999999998888766211110000 00124578889999999999999999999999987
Q ss_pred CCcHH
Q 009850 207 PDNNK 211 (524)
Q Consensus 207 P~~~~ 211 (524)
....+
T Consensus 72 re~~D 76 (94)
T PF12862_consen 72 RENGD 76 (94)
T ss_pred HHHCC
Confidence 65544
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.82 E-value=2.3 Score=41.86 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
...++..++..+...|+++.++..+++.+..+|.+.. |..+-..|...|+...|+..|++.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4568889999999999999999999999999999988 999999999999999999999975
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.71 E-value=22 Score=39.42 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHH-HcCChHHHHHHHHHHHHcC--CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cH
Q 009850 45 GDTPYVRAKNVQL-VDKDPEKAIPLFWAAINAG--DRVDS----ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD---QA 114 (524)
Q Consensus 45 ~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~~~--p~~~~----a~~~La~~~~~~g~~~eAi~~~~~al~~~p~---~~ 114 (524)
....++++|.+++ ...+++.|..++.+++.+. ++..+ +.+.++.++.+.+... |...++++++.... ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3346788999888 7899999999999998775 33332 3456789999988877 99999998887665 23
Q ss_pred HHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH----HHHHHHHHHHHHc
Q 009850 115 QESLDNIL-LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT----RLLGNLGWALMQQ 189 (524)
Q Consensus 115 ~~~l~~~l-g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~----~a~~~Lg~~~~~~ 189 (524)
+..++..+ ...+...+++..|++.++....... ..+++ -+....+.++...
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~------------------------~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN------------------------QRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh------------------------hcCCHHHHHHHHHHHHHHHhcC
Confidence 32222222 3334344799999999998877611 12232 2334446777778
Q ss_pred CCHHHHHHHHHHHHhhC------CCc--HH---HHHH--HHHHHHcCCHHHHHHHHHHh
Q 009850 190 NNYIEAEDAYRRALSIA------PDN--NK---MCNL--GICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~------P~~--~~---~~~L--g~~~~~~G~~~eA~~~~~~a 235 (524)
+..+++++..+++.... |+. +. |+.+ -.++...|++..+...+++.
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888988888885422 221 11 3332 33567788888887777664
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.45 E-value=12 Score=39.68 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=68.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRV-DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e 134 (524)
....|+++++....+.. ++-|.- ......++..+.++|..+.|+... .+ + ...+. +..++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~D-~--~~rFe---LAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV-------TD-P--DHRFE---LALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S--H--HHHHH---HHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc-------CC-h--HHHhH---HHHhcCCHHH
Confidence 35678888877766422 111222 233556677777888877776643 22 2 22222 3347888888
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCN 214 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~ 214 (524)
|.+..+ ..++...|..||...+.+|+++-|+.+|+++-. +..
T Consensus 337 A~~~a~-------------------------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~ 378 (443)
T PF04053_consen 337 ALEIAK-------------------------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSG 378 (443)
T ss_dssp HHHHCC-------------------------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHH
T ss_pred HHHHHH-------------------------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccc
Confidence 766543 345677999999999999999999999987633 444
Q ss_pred HHHHHHHcCCHH
Q 009850 215 LGICLMKQGRIG 226 (524)
Q Consensus 215 Lg~~~~~~G~~~ 226 (524)
|...|.-.|+.+
T Consensus 379 L~lLy~~~g~~~ 390 (443)
T PF04053_consen 379 LLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHHHCT-HH
T ss_pred cHHHHHHhCCHH
Confidence 555555556543
No 327
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.44 E-value=0.9 Score=47.73 Aligned_cols=103 Identities=12% Similarity=-0.011 Sum_probs=82.5
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN---RAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+|...+-+..-|.-.+..+....|+..|.+++...|+....+.+.+.++++.+ +.-.|+.....+++++|... .
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--k 446 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--K 446 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--H
Confidence 344555556666666677778899999999999999999999999999998865 55566677777888888765 7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+++.|+.++..++++.+|+.+...+...
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 8888999999999999999988765544
No 328
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.21 E-value=4.2 Score=41.81 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=79.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc---cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK---RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~---~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
.-+..+++++.|..|..-|+.++++...+.++..- ..+.+... ...+...|..||.++++.+-|+.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~v-----------aSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSV-----------ASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHH-----------HHHHHHHHHHhhhhcCCCchHHH
Confidence 33556788999999999999999997666554321 01111000 02245678999999999999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+-.+.+.++|.+.. +...|.|+..+.+|.+|...+--+
T Consensus 250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 888999999999999998776644
No 329
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.79 E-value=9.2 Score=41.46 Aligned_cols=64 Identities=20% Similarity=0.074 Sum_probs=40.8
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKS 105 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~ 105 (524)
.++....-|-.||...+..=+++-|...|.++-.+ ....+. -..+|.++.-.|++.+|.++|.+
T Consensus 580 clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 580 CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHH
Confidence 44555556888888888888888888888765331 111111 23456666667777777777654
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.58 E-value=17 Score=40.24 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHcC---C-CcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCCh
Q 009850 62 PEKAIPLFWAAINAG---D-RVDSALKDMAIVMK-QQNRAEEAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGRL 132 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~---p-~~~~a~~~La~~~~-~~g~~~eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~~ 132 (524)
...|+.+++.+++.. | ..+.+++.+|.++. ...++++|..++++++.+...+ ..+.+...++.+|.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 456788888888522 2 13456778898877 7889999999999998887532 2345667788888888887
Q ss_pred HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHhhC--C
Q 009850 133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR--LLGNL-GWALMQQNNYIEAEDAYRRALSIA--P 207 (524)
Q Consensus 133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~--a~~~L-g~~~~~~g~~~eAi~~~~~Al~l~--P 207 (524)
. |...++++++.... .+.... ++..+ ...+...+++..|++.++...... .
T Consensus 117 ~-a~~~l~~~I~~~~~-----------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET-----------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred H-HHHHHHHHHHHHhc-----------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 7 99999999887211 122221 22222 233333479999999999998876 3
Q ss_pred CcHH---H--HHHHHHHHHcCCHHHHHHHHHHh
Q 009850 208 DNNK---M--CNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 208 ~~~~---~--~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.++. . ...+.+....+..+++++..+++
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 4444 2 23466667778788888888865
No 331
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.34 E-value=1.4 Score=35.63 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 56 QLVDKDPEKAIPLFWAAINAGD---------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p---------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
.++.|+|.+|++.+.+.+.... ....++.++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4567778888777776665421 1134556677777777777777777777766644
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.17 E-value=22 Score=44.35 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=77.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------C-
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------P- 243 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------~- 243 (524)
.-+..|...|.+....|+++-|-.+.-.|.+.. -+. +...|..+...|+...|+..+++.+..+-.+ +
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347899999999999999999999999998877 334 7889999999999999999999975332222 1
Q ss_pred -----------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009850 244 -----------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGD 273 (524)
Q Consensus 244 -----------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 273 (524)
......++.|..+.+..|.+...|+.+|..
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 011334788999999999888888888843
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.91 E-value=2.2 Score=33.25 Aligned_cols=57 Identities=5% Similarity=0.038 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM---AIVMKQQNRAEEAIEAIKS 105 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L---a~~~~~~g~~~eAi~~~~~ 105 (524)
....|.-++.+.+.++|+..++++++..++.++.+..+ ..+|...|+|.+.+.+--+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777766655544433 3556666777766665544
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.91 E-value=6 Score=34.30 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCC---hHHHHHHHHHHHH-cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 45 GDTPYVRAKNVQLVDKD---PEKAIPLFWAAIN-AGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~-~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
.-...|+++.++....+ ..+.+.+++..++ ..| ..-++++.|+..++++++|+.|+.+.+.+++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 33456667766666543 4566777777775 333 2345677777777777777777777777777777765
No 335
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.85 E-value=1.4 Score=51.10 Aligned_cols=176 Identities=15% Similarity=0.078 Sum_probs=118.9
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 83 LKDMAIVMKQQNRAEEAIE------AIKS-LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~------~~~~-al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
....|......|.+.+|.+ .+.. .-.+.|+.+ ..+..++.++.+.|++++|+..-.++.-+..+.....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~--~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-- 1010 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA--SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-- 1010 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH--HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC--
Confidence 4455666777777887777 4442 222344544 6778899999999999999998888765532221111
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH----HHHHHHHHHHcCCHH
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQGRIG 226 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~----~~~Lg~~~~~~G~~~ 226 (524)
.|+....+.+++...+..++...|...+.++..+ .|++|. ..+++.++...++++
T Consensus 1011 ----------------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1011 ----------------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred ----------------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 3666778899999999999999999999998875 344433 678999999999999
Q ss_pred HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
-|+.+.+.|......-.+. ..-..+..+..++..+...+++..|+...+..+
T Consensus 1075 ~al~~le~A~a~~~~v~g~-------------~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGP-------------KELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHHHHHhhhcCc-------------cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 9999999874422111100 011223345566777777777777766655444
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=2.6 Score=45.37 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+...-+.-+++..+|..++++|...+...+.+.. +...+....++..||..+.+.+.|.+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------------~~~FaK~qR~l~~CYL~L~QLD~A~E 415 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--------------------SDRFAKIQRALQVCYLKLEQLDNAVE 415 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--------------------hhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344456677888999999999988876322211 22335678899999999999999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
++++|-+.+|.++- -..+-.+...-|.-++|+.+........
T Consensus 416 ~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 416 VYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 99999999999987 5555666667788899999888764433
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.78 E-value=7.8 Score=35.19 Aligned_cols=97 Identities=11% Similarity=-0.056 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cH-H--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD--NN-K--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL 250 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~-~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~ 250 (524)
.-+.+..|.+..+.|+..+|+..|.++-...|- -. + ...-+.++...|-|++-..-.+..
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL--------------- 158 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL--------------- 158 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---------------
Confidence 447788899999999999999999988775433 22 1 455677788888888766665531
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 251 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 251 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
+..-.|-...+.-.||..-++.|++..|...|..+-.
T Consensus 159 -----a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 159 -----AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -----cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2223344456778889999999999999999988765
No 338
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=1.8 Score=42.11 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ 115 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~ 115 (524)
++-..+.+.++++.|..+..+.+..+|.++.-+...|.+|.++|.+.-|+..++..++..|+++.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34557788999999999999999999999999999999999999999999999999999998863
No 339
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=3.5 Score=44.51 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
+-|.-+++..+|..+++.|...+...|.+.. ......+..+|..+.+.|.|.+++..|-+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------------- 423 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------------- 423 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh---------------
Confidence 3456667778899999999998888775422 456678888899999999999999998887
Q ss_pred HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+|.++-.....-.+....|.-++|+.+........
T Consensus 424 -----------d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 424 -----------DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred -----------ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 77777777777777777888888888887776543
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.67 E-value=2.7 Score=36.38 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-hCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 176 TRLLGNLGWALMQQNN---YIEAEDAYRRALS-IAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~-l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
....+++++++....+ ..+.+..++..++ -.|+... .+.|+..+.++|+|+.++.+.+..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 5678999999988764 5678999999997 4555444 67899999999999999999994433
No 341
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.64 E-value=1.2 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCc
Q 009850 177 RLLGNLGWALMQQNNYIEAEDA--YRRALSIAPDN 209 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~--~~~Al~l~P~~ 209 (524)
+.++.+|..+..+|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4678889999999999999999 54777777654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.58 E-value=0.43 Score=28.56 Aligned_cols=23 Identities=35% Similarity=0.219 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
+++++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 55667777777777777776654
No 343
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=14 Score=35.87 Aligned_cols=132 Identities=8% Similarity=0.001 Sum_probs=100.6
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC-ChHHHHH
Q 009850 59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG-RLDDQIA 137 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g-~~~eA~~ 137 (524)
..+|.++..+|+.++..+.. -..|+.+.+.++.++|.+- .+|...-.++..++ +..+-++
T Consensus 39 te~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnY--TVW~yRr~iL~~l~~dL~~El~ 99 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANY--TVWQYRRVILRHLMSDLNKELE 99 (318)
T ss_pred chhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccc--hHHHHHHHHHHHhHHHHHHHHH
Confidence 45677777777776665544 4566777778889999774 44444444444433 4566677
Q ss_pred HHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCcHH-HHHH
Q 009850 138 LLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI-EAEDAYRRALSIAPDNNK-MCNL 215 (524)
Q Consensus 138 ~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~-eAi~~~~~Al~l~P~~~~-~~~L 215 (524)
++.+.++- +|.+-.+|...-.+....|++. .-++..+.++..+.++-. |..+
T Consensus 100 ~l~eI~e~--------------------------npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 100 YLDEIIED--------------------------NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred HHHHHHHh--------------------------CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 77777766 8999999999999999999988 889999999998888877 8888
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 009850 216 GICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 216 g~~~~~~G~~~eA~~~~~~a 235 (524)
-.|....+.++.-+.+..+.
T Consensus 154 qW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 88988888899888887754
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.57 E-value=9.2 Score=40.50 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=63.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850 90 MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169 (524)
Q Consensus 90 ~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~ 169 (524)
....|+++++....+.. .+-|.-+ ...+...+..+.+.|..+.|+.+.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~------------------------------ 318 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIP-KDQGQSIARFLEKKGYPELALQFV------------------------------ 318 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG---HHHHHHHHHHHHHTT-HHHHHHHS------------------------------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCC-hhHHHHHHHHHHHCCCHHHHHhhc------------------------------
Confidence 34567888877776521 1222221 134566677778888887776643
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.+++..+.|+. +.|+.+.|.+..+ .-+++. |-.||...+.+|+++-|..+|+++
T Consensus 319 ----~D~~~rFeLAl---~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 319 ----TDPDHRFELAL---QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp ----S-HHHHHHHHH---HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred ----CChHHHhHHHH---hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34456666654 8899999988643 334566 999999999999999999999986
No 345
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.17 E-value=0.86 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+++..||.+-+..++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998764
No 346
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.07 E-value=2.7 Score=41.37 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK 140 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~ 140 (524)
++..-+...++.++. ....++..++..+...|+++.++..+++.+..+|-+- ..+..+...|...|+...|+..|+
T Consensus 136 ~f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E--~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 136 RFDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE--PAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHcCCchHHHHHHH
Confidence 366666666666553 4567889999999999999999999999999999775 577778888999999999999999
Q ss_pred HHHHH
Q 009850 141 HKLYL 145 (524)
Q Consensus 141 ~al~l 145 (524)
+.-..
T Consensus 212 ~l~~~ 216 (280)
T COG3629 212 QLKKT 216 (280)
T ss_pred HHHHH
Confidence 88764
No 347
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=30 Score=37.28 Aligned_cols=182 Identities=13% Similarity=0.050 Sum_probs=109.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCc---------H-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850 93 QNRAEEAIEAIKSLRSRCSDQ---------A-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS 162 (524)
Q Consensus 93 ~g~~~eAi~~~~~al~~~p~~---------~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~ 162 (524)
...|++|...|.-++...+.+ + +......++.+...+|+.+-|..+..++|-.....+.-.-....
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s---- 326 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS---- 326 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc----
Confidence 345889999999888876532 1 23555678889999999999999998887542111110000000
Q ss_pred HhHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHH--HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 163 QGKKFQVSVEQEATR---LLGNLGWALMQQNNYIEAEDAYRRALSIAPD-NNK--MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 163 ~~~~~~~~~~p~~~~---a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
+.+-.--+.|.+-. +++..-..+.+.|-|.-|.++++-.++++|. ++. .+.+-....+..+|+=-+..++...
T Consensus 327 -g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 327 -GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred -ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 00000001344432 2333344566789999999999999999999 666 4444444456666766666666431
Q ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHhhcccCCCC
Q 009850 237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~eAi~~~~~al~~~P~ 296 (524)
. ...+...|+++ .-..++..|..... -..|...+.+|+..-|.
T Consensus 406 ~----------------~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 406 N----------------MNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred h----------------hccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 1 03345556654 23445566665555 45677778888877773
No 348
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=4.1 Score=39.66 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
....++=..+...++++.|..+-++.+.++|+++. +--.|.+|.++|-+.-|+..++..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 45567777889999999999999999999999998 999999999999999999999943
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.12 E-value=0.93 Score=27.09 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLF 69 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~ 69 (524)
++.+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555555544
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.06 E-value=3.4 Score=32.19 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H---HHHHHHHHHcCCHHHHHHHHHH
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-M---CNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~---~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
-...-|.-++...+.++|+..++++++..++.+. + ..+..+|...|++.+.+.+-.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577778999999999999999999888777 4 4566778999999998887553
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.04 E-value=2.2 Score=27.92 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 009850 82 ALKDMAIVMKQQNRAEEAIEA 102 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~ 102 (524)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.76 E-value=47 Score=35.36 Aligned_cols=171 Identities=15% Similarity=0.092 Sum_probs=108.6
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK 140 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~ 140 (524)
.+.--..++.+++... ++--+++.++.||... ..++-....++.++.+=++. .....|+..|.. ++-..+..+|.
T Consensus 81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv--v~~ReLa~~yEk-ik~sk~a~~f~ 155 (711)
T COG1747 81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV--VIGRELADKYEK-IKKSKAAEFFG 155 (711)
T ss_pred HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH--HHHHHHHHHHHH-hchhhHHHHHH
Confidence 3344445566666654 3457788999999988 56777888889989888776 556677776665 88999999999
Q ss_pred HHHHHhhc---cHh----------hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhC
Q 009850 141 HKLYLIQQ---GLA----------FNGKRTKTARSQGKKFQVSVEQEATRLLGNLG-WALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 141 ~al~l~~~---~~~----------~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg-~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
+++...-. ..+ +.+...+-.....+.++......-..+.+.-- .-|....+|.+|++.+...++.+
T Consensus 156 Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 156 KALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 98865311 000 11222233333334444333333344433333 44556679999999999999998
Q ss_pred CCcHH-HHHHHHHHHH--------------------cCCHHHHHHHHHHhc
Q 009850 207 PDNNK-MCNLGICLMK--------------------QGRIGEAKETLRRVK 236 (524)
Q Consensus 207 P~~~~-~~~Lg~~~~~--------------------~G~~~eA~~~~~~a~ 236 (524)
..+.. .-++-.-+.. -.++-+++..|+...
T Consensus 236 ~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 236 EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 88765 4444433333 345677777777753
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.56 E-value=34 Score=33.45 Aligned_cols=203 Identities=9% Similarity=0.015 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC----CCcHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINA-----GDRVDSALKDMAIVMKQQNRAE-EAIEAIKSLRSRC----SDQAQE 116 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-----~p~~~~a~~~La~~~~~~g~~~-eAi~~~~~al~~~----p~~~~~ 116 (524)
+..+.=+..+++.|++.-|.++..-.++. .+.+.+....++.++...+.-+ +=....+++++-. +..+..
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 34566677788888888887766555543 3455566678888888776433 2333444444433 223445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH-HHHHcCCHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW-ALMQQNNYIEA 195 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~-~~~~~g~~~eA 195 (524)
.++..+|..|.+.|++.+|..+|-..-.-. ... .............|...+.+...+. .|...++...|
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~--~~~--------~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A 160 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPS--AFA--------YVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDA 160 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-HHH--HHH--------HHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcCChh--HHH--------HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHH
Confidence 899999999999999999998885432210 000 0001111112235777777777765 46677999999
Q ss_pred HHHHHHHHhh----CCC-----------cHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850 196 EDAYRRALSI----APD-----------NNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 258 (524)
Q Consensus 196 i~~~~~Al~l----~P~-----------~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 258 (524)
...+..-++. .|+ .+. +..+-..-++.++. ..|.. ..+.|+..++
T Consensus 161 ~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~----~~F~~--------------L~~~Y~~~L~ 222 (260)
T PF04190_consen 161 NELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL----PLFKK--------------LCEKYKPSLK 222 (260)
T ss_dssp HHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H----HHHHH--------------HHHHTHH---
T ss_pred HHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH----HHHHH--------------HHHHhCcccc
Confidence 9888776665 332 233 22333333444443 34443 2334556677
Q ss_pred hCCCCHHHHHHHHHHHHHc
Q 009850 259 MLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 259 ~~p~~~~a~~~lg~~~~~~ 277 (524)
.+|........+|..|...
T Consensus 223 rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 223 RDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHTHHHHHHHHHHHH--
T ss_pred ccHHHHHHHHHHHHHHCCC
Confidence 7788888888899888764
No 354
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.36 E-value=46 Score=34.86 Aligned_cols=165 Identities=9% Similarity=0.054 Sum_probs=84.2
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 009850 68 LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQ 147 (524)
Q Consensus 68 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 147 (524)
.+.+++..-+-.++.|+....-+...++-+.|+...++++...|. +...++..|....+-++-..+|+++++-..
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 345566666666777777777777777777777777777666664 223444455445555555555555543210
Q ss_pred c-------------------------------cHhh--------hcccHHHHHHH-hHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 148 Q-------------------------------GLAF--------NGKRTKTARSQ-GKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 148 ~-------------------------------~~~~--------~~~~~~~a~~~-~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
. .+.+ .....+++... .++-...+-..+.-+++.+- -+.
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~-E~~ 443 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI-EYY 443 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH-HHH
Confidence 0 0000 00001111110 11110111111111111111 234
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850 188 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~ 238 (524)
..|++.-|...|+-.+...|+.+. -...-..+...++-..|...|+.+.+.
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 567777777777777777777777 333444556777777777777765443
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.72 E-value=1.6 Score=28.99 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINA 75 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~ 75 (524)
.|..||.+.+..++|++|+.-|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566666666666666666666666654
No 356
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.50 E-value=51 Score=34.58 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-------------HHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-------------SAL--KDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-------------~a~--~~La~~~~~~g~~~eAi~~~~~a 106 (524)
.|.++-..+-.|...++++.+.+|++.+..--..-.+.. +.+ ...+.++...|++.++...+++.
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 455544455668888889999998888766554411111 111 23578888899999998888886
Q ss_pred HHh
Q 009850 107 RSR 109 (524)
Q Consensus 107 l~~ 109 (524)
+..
T Consensus 155 ~~~ 157 (549)
T PF07079_consen 155 IER 157 (549)
T ss_pred HHH
Confidence 654
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.12 E-value=24 Score=33.32 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=53.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
.+++.+...+|+...+.-++.+|.+......+-.+|+-.|+|++|...++-+-.+.|.+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 457888899999999999999999999999999999999999999999999988888763
No 358
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.83 E-value=20 Score=36.05 Aligned_cols=185 Identities=14% Similarity=0.032 Sum_probs=103.0
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLK 140 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~ 140 (524)
-.++|+.+-+-...+-|..++++..++..+++..+...=...--..+-+...+. .+| ..+-++++...+.
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr--~lW--------~r~lI~eg~all~ 280 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDR--SLW--------DRALIDEGLALLD 280 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccch--hhh--------hHHHHHHHHHHHH
Confidence 346777777777777788788777777665543221110000000011111111 222 2234567777777
Q ss_pred HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 009850 141 HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ-----QNNYIEAEDAYRRALSIAPDNNKMCNL 215 (524)
Q Consensus 141 ~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~-----~g~~~eAi~~~~~Al~l~P~~~~~~~L 215 (524)
+++... .|+.-...-.++.++.. .-+|..=...|.-...+.|+-..-.|.
T Consensus 281 rA~~~~-------------------------~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNR 335 (415)
T COG4941 281 RALASR-------------------------RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNR 335 (415)
T ss_pred HHHHcC-------------------------CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehH
Confidence 776652 23333333344444433 236766667777777777766556666
Q ss_pred HHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850 216 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 216 g~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P 295 (524)
+.+..+..-.+.++...+..... ....++.-.|-..|..+.++|+..+|...|.+++.+.+
T Consensus 336 AVAla~~~Gp~agLa~ve~L~~~-------------------~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 336 AVALAMREGPAAGLAMVEALLAR-------------------PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred HHHHHHhhhHHhHHHHHHHhhcc-------------------cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 77666665566666666533111 01222333566678888888888888888888887766
Q ss_pred CCCC
Q 009850 296 CKDH 299 (524)
Q Consensus 296 ~~~~ 299 (524)
+..+
T Consensus 397 ~~ae 400 (415)
T COG4941 397 NAAE 400 (415)
T ss_pred ChHH
Confidence 5443
No 359
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.51 E-value=38 Score=35.07 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS--ALKDM--AIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~--a~~~L--a~~~~~~g~~~eAi~~~~~al~~ 109 (524)
...+...+..++|..|...|......-|.... .+..+ |.-+...-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566778888888888888888875333332 33333 44455667788888888877665
No 360
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.48 E-value=2.3 Score=48.88 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=72.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ 257 (524)
Q Consensus 182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al 257 (524)
...++...+.|++|+..|++.-...|.... .+..|..+..+ +.... ++..+++|+..|++ +
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~-~ 545 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEK------------ASEQG--DPRDFTQALSEFSY-L 545 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHH------------HHhcC--ChHHHHHHHHHHHH-h
Confidence 456777888999999999999999988755 45555555433 21111 11233334433433 2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
...|.-+--|...+.+|..+|+++|-+.+|..+++..|.++..
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 546 HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 3345555567788889999999999999999999999998873
No 361
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.37 E-value=47 Score=38.60 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
|..+--|...+.+|.++|+|++-+++|.-|++..|+++.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 444555666677777777777777777777777776644
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.80 E-value=51 Score=33.13 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~ 164 (524)
.+-....+..+..+-++.-..+++++|.-+ .++..++.- ..--..+|..+|+++++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA--~AyvLLAEE--Ea~Ti~~AE~l~k~ALka------------------- 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECA--TAYVLLAEE--EATTIVDAERLFKQALKA------------------- 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhh--hHHHhhhhh--hhhhHHHHHHHHHHHHHH-------------------
Confidence 333444555666777888888999998775 455555533 445678899999999876
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H--HHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-M--CNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~--~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
.+..++..+.....|...+|.. +.+ .+.. | ..|+.|..++|+..+|++.++......+
T Consensus 246 -----------~e~~yr~sqq~qh~~~~~da~~------rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 246 -----------GETIYRQSQQCQHQSPQHEAQL------RRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred -----------HHHHHhhHHHHhhhccchhhhh------hcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1122333333333443333322 222 2333 3 4689999999999999999997655444
No 363
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.65 E-value=48 Score=32.69 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHcCCHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGD--------RVDSALKDMAIVMKQQNRAEE 98 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~a~~~La~~~~~~g~~~e 98 (524)
..+++-....+++++|+..|.+.+.... +...+...++.+|...|++..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 4677778889999999999999987632 223457788999999988653
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.06 E-value=7.1 Score=40.18 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+--.+..||.++++.+-|+....+.+.+ +|....-+...+.++..+.+|.+|..
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~l--------------------------nP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINL--------------------------NPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhc--------------------------CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3346778899999999999999999888 89998889999999999999999988
Q ss_pred HHHHHH
Q 009850 198 AYRRAL 203 (524)
Q Consensus 198 ~~~~Al 203 (524)
.+--+.
T Consensus 284 Samia~ 289 (569)
T PF15015_consen 284 SAMIAD 289 (569)
T ss_pred HHHHHH
Confidence 776554
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.77 E-value=9.2 Score=35.61 Aligned_cols=81 Identities=9% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHcCCh
Q 009850 56 QLVDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQESLDNILLDLYKRCGRL 132 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~l~~~lg~~~~~~g~~ 132 (524)
+...-.-++|...|-++-.. .=++++..+.||..|. ..+.++|+.++.+++++.+.+ ....+...|+.+|...|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34443446677766555332 2256788888887666 578999999999999987643 3347888999999999999
Q ss_pred HHHHH
Q 009850 133 DDQIA 137 (524)
Q Consensus 133 ~eA~~ 137 (524)
+.|--
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 98853
No 366
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.37 E-value=42 Score=37.77 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=36.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 87 AIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 87 a~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
-.++.+..-|+-|+.+-+.- .. +.+....++..+|.-++..|++++|...|-+++..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34556666677777665431 11 22222466677788888888888888888877754
No 367
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.17 E-value=29 Score=29.94 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=38.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK 104 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~ 104 (524)
.+...+.+...+.+++..+..++.++..+..+..+|... +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344567899999999999998888888888888888765 3456666666
No 368
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.92 E-value=54 Score=31.48 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh-----hCCCcHH----HHHHHHHH-HHcCCHHHHHHHHHHh
Q 009850 192 YIEAEDAYRRALS-----IAPDNNK----MCNLGICL-MKQGRIGEAKETLRRV 235 (524)
Q Consensus 192 ~~eAi~~~~~Al~-----l~P~~~~----~~~Lg~~~-~~~G~~~eA~~~~~~a 235 (524)
.+.|...|++|+. +.|.+|. ..|.+..| .-+|+.++|+...+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4678888888876 4677877 34555555 4489999999988875
No 369
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.36 E-value=97 Score=34.05 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH------HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAA------INAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS--RCSDQAQESLDNI 121 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~a------l~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~l~~~ 121 (524)
..+|.++.-.|.|.+|..+|.+. ++...+ --.+.++.-+...|.-++-..+.++-.. .+-..+ ..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----ka 708 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KA 708 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HH
Confidence 35667777788888888877553 111111 1134455555555655554444443211 111222 12
Q ss_pred HHHHHHHcCChHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALL 139 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~ 139 (524)
-+.++...|+.++|+...
T Consensus 709 AAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred HHHHhhcccchhhhhhhh
Confidence 345566778888877643
No 370
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.34 E-value=6.1 Score=38.56 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 195 AEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 195 Ai~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
|+.+|.+|+.+.|++.. |+.+|.++...|+.-.|+-+|-++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rs 42 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRS 42 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHH
Confidence 68899999999999988 999999999999999999888865
No 371
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.98 E-value=53 Score=34.49 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH---HHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHhhccHh
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-AQ---ESLDNILLDLYKRCGRL-------DDQIALLKHKLYLIQQGLA 151 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-~~---~~l~~~lg~~~~~~g~~-------~eA~~~~~~al~l~~~~~~ 151 (524)
...||..++.+|+|+-|...|+.+.+-...+ .+ ..+.-..+.++...+.. ++...+++.++..+.....
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 4578999999999999999999988765433 21 11222333333333322 2444555555444211000
Q ss_pred hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcH---H---HHHHHHHH--HH
Q 009850 152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI--APDNN---K---MCNLGICL--MK 221 (524)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~---~---~~~Lg~~~--~~ 221 (524)
.. .........+....+.++...|.+.+|...+-++... ..+.. . +-.+|.|+ ..
T Consensus 291 ~~---------------~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~ 355 (414)
T PF12739_consen 291 PR---------------CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLR 355 (414)
T ss_pred cc---------------cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccc
Confidence 00 0001122456667777788888888887777766654 32322 2 33455555 11
Q ss_pred cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850 222 QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMN-KGGDRVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 222 ~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~-lg~~~~~~g~~~eAi~~~~~al~~~P 295 (524)
... ...+... + .. ...|.- -|.-|...|+...|+.+|..++....
T Consensus 356 ~~~----------------~~~~~~r-----~-------RK-~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 356 SNR----------------PSPGLTR-----F-------RK-YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred cCC----------------CCccchh-----h-------HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 100 0000000 0 00 112333 36789999999999999999886543
No 372
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=79.79 E-value=4.6 Score=39.94 Aligned_cols=77 Identities=8% Similarity=-0.100 Sum_probs=68.3
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKD-MAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~-La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
...+.+.++..|...+......|-+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.++++.+|+++
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 345677888889888888888899999999999999999999999987 56778889999999999999999999987
No 373
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.98 E-value=7.6 Score=37.89 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC 213 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~ 213 (524)
|+.+|.+|+.+ .|++...|+.||.++...|+.=.|+-+|-+++...--.+. ..
T Consensus 1 A~~~Y~~A~~l--------------------------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~ 54 (278)
T PF10373_consen 1 AERYYRKAIRL--------------------------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARE 54 (278)
T ss_dssp HHHHHHHHHHH---------------------------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHH
T ss_pred CHHHHHHHHHh--------------------------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHH
Confidence 67889999888 8999999999999999999999999999999976544454 88
Q ss_pred HHHHHHHH
Q 009850 214 NLGICLMK 221 (524)
Q Consensus 214 ~Lg~~~~~ 221 (524)
||...+.+
T Consensus 55 NL~~lf~~ 62 (278)
T PF10373_consen 55 NLQKLFEK 62 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888877
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.18 E-value=24 Score=32.91 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC
Q 009850 96 AEEAIEAIKSLRSRCS-DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE 174 (524)
Q Consensus 96 ~~eAi~~~~~al~~~p-~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~ 174 (524)
-++|...|-++-.... +++ .+.+.+|..|. ..+.++|+.++.+++++...+ +.-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~--elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~----------------------~~~ 176 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETA--ELQYALATYYT-KRDPEKTIQLLLRALELSNPD----------------------DNF 176 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC----------------------CCC
Confidence 3556666655433322 334 67777776554 778999999999999883211 123
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHH
Q 009850 175 ATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+++++..|+.++.++|+++.|--
T Consensus 177 n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhhhh
Confidence 58899999999999999999854
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.00 E-value=9.7 Score=37.42 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+...+..|...|.+.+|+.+.++++.++|-+. ..+..+..++...|+--.|...|++.-+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e--~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSE--QDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 44556778888999999999999999998664 45566777788888888888888776554
No 376
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.78 E-value=77 Score=33.97 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH-HHHHH--------cCCHHHHHHHHHH---HHHhCCCc-HH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA-IVMKQ--------QNRAEEAIEAIKS---LRSRCSDQ-AQ 115 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La-~~~~~--------~g~~~eAi~~~~~---al~~~p~~-~~ 115 (524)
++.+|..+.-+.+|.+|-..+....+.+...-..|..++ -|+.. .|+-+.|-.+++. .+...|.+ +.
T Consensus 306 ~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~ 385 (546)
T KOG3783|consen 306 VFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL 385 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch
Confidence 677888889999999999999998888766555555555 33322 2344444444443 33333322 11
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH-HHHHhhccHhhhcccHHHHHHHhHHHH-Hhc-CCCc-HHHHHHHHHHHHHcCC
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKH-KLYLIQQGLAFNGKRTKTARSQGKKFQ-VSV-EQEA-TRLLGNLGWALMQQNN 191 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~-al~l~~~~~~~~~~~~~~a~~~~~~~~-~~~-~p~~-~~a~~~Lg~~~~~~g~ 191 (524)
.......+.-+...+. -.+...+.. +.++...-..+...-............ ... ++++ .--+..+|.++..+|+
T Consensus 386 E~f~~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~ 464 (546)
T KOG3783|consen 386 EKFIVRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGD 464 (546)
T ss_pred hHHHHHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC
Confidence 1111122222222221 000011110 011100000001100111111110000 111 3333 2345678999999999
Q ss_pred HHHHHHHHHHHHhh---CCCc----HH-HHHHHHHHHHcCC-HHHHHHHHHHhcccc
Q 009850 192 YIEAEDAYRRALSI---APDN----NK-MCNLGICLMKQGR-IGEAKETLRRVKPAV 239 (524)
Q Consensus 192 ~~eAi~~~~~Al~l---~P~~----~~-~~~Lg~~~~~~G~-~~eA~~~~~~a~~~~ 239 (524)
-..|..+|..+++. ...+ |. +|.+|..+..+|. ..++..++.+|....
T Consensus 465 ~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 465 SEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 99999999999843 2222 22 8999999999999 999999999875544
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.74 E-value=6.2 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
+.||.+|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455566666666666666665553
No 378
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.76 E-value=8.1 Score=33.96 Aligned_cols=53 Identities=17% Similarity=0.042 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA 96 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~ 96 (524)
.+.+.....+...+..|++.-|.++...++..+|++.++...++.+|.++|.-
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45677888888999999999999999999999999999999999888887643
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.94 E-value=71 Score=31.26 Aligned_cols=176 Identities=11% Similarity=0.107 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhc
Q 009850 94 NRAEEAIEAIKSLRSRCSDQAQ--ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV 171 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~p~~~~--~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 171 (524)
.+.++|+.-|++++++.+.-+. +.+...+..+++++|+|++..+.|++.+.....+..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT-------------------- 100 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT-------------------- 100 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4789999999999999985432 456667778899999999999999998876322111
Q ss_pred CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHH-H----HHHHHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 172 EQEATR-LLGNLGWALMQQNNYIEAEDAYRRALSI--APDNNK-M----CNLGICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 172 ~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~-~----~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
.+..+ ..+.+-..-....+.+--...|+..+.. +..+.. | ..||.+|+..|+|..-...+.+.........
T Consensus 101 -rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 -RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred -ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 11111 1111111111122222222333332221 222222 4 3589999999999888888877644333332
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 244 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 244 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|.-+. ....+..+.|..--..|-.+.+...-...|++++.....-++
T Consensus 180 GedD~---------kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 180 GEDDQ---------KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred Cchhh---------hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 22111 000111112222233555666655556667888777655554
No 380
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=75.68 E-value=4.7 Score=39.83 Aligned_cols=76 Identities=8% Similarity=-0.058 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHHHcCChHHHHHHHHHHHHH
Q 009850 68 LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI-LLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 68 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~-lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
.|.++-...++++..|...+.-....|-|.+--..|.+++..+|.+. .+|.. -..-+...++++.+...|.+++++
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv--dlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV--DLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--eeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34444555788999999998888888999999999999999999886 44432 233356779999999999999999
No 381
>PF12854 PPR_1: PPR repeat
Probab=75.53 E-value=6.2 Score=25.18 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=16.0
Q ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 207 PDNNKMCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 207 P~~~~~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
|+...|..+-..|.+.|+.++|.+.++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444445566666666666666666655
No 382
>PF13041 PPR_2: PPR repeat family
Probab=74.94 E-value=11 Score=26.12 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHHHHHHH
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIA--PDNNKMCNLGI 217 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~~~~Lg~ 217 (524)
...|+.+-..+.+.|++++|.+.|++..+.. |+...+..+-.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4578888889999999999999999998753 55544544433
No 383
>PF12854 PPR_1: PPR repeat
Probab=74.16 E-value=7.2 Score=24.89 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
..++.+...|.+.|+.++|.++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4556667777777777777777764
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.00 E-value=19 Score=34.91 Aligned_cols=80 Identities=16% Similarity=0.092 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCC
Q 009850 62 PEKAIPLFWAAINAGD------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGR 131 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~p------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~ 131 (524)
-...++++.+|+.... -.......+|..|+..|++++|+++|+.+........+ ..+...+..++...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666665421 12234557899999999999999999999777664432 3556677788889999
Q ss_pred hHHHHHHHHH
Q 009850 132 LDDQIALLKH 141 (524)
Q Consensus 132 ~~eA~~~~~~ 141 (524)
.+..+.+.-+
T Consensus 234 ~~~~l~~~le 243 (247)
T PF11817_consen 234 VEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHH
Confidence 8887665443
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.82 E-value=22 Score=27.49 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
+...|.-+-+.|++.+|+.+|+. +++.+.+++...|+..........
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~--------------aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKK--------------AIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH--------------HHHHHHHHHHhCCChHHHHHHHHH
Confidence 55566777799999999999995 788888999999988765444433
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.69 E-value=86 Score=39.57 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINA-------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~-------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
-|.+....-....+..+-+-.+++++-. +...++.|...|.+.+..|+++.|..++-.|.+..+. .++.
T Consensus 1631 ~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~ 1706 (2382)
T KOG0890|consen 1631 NWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVL 1706 (2382)
T ss_pred hHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHH
Confidence 4544444434444455666666666532 3456788999999999999999999999998887743 4557
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh--cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH--HHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN--GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY--IEAE 196 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~--~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~--~eAi 196 (524)
..+..+...|+-..|+..+++.++.+..+..-. ......-. -....+...++......|++ .+-+
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~-----------~i~~~~~L~~~~~~~es~n~~s~~il 1775 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL-----------LIFKKAKLKITKYLEESGNFESKDIL 1775 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh-----------hhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 778888999999999999999998752221100 00000000 00113555666666666764 4567
Q ss_pred HHHHHHHhhCCCcHH-HHHHHH
Q 009850 197 DAYRRALSIAPDNNK-MCNLGI 217 (524)
Q Consensus 197 ~~~~~Al~l~P~~~~-~~~Lg~ 217 (524)
..|..+.++.|.... ++.+|.
T Consensus 1776 k~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1776 KYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred HHHHHHHHHcccccCceeeHHH
Confidence 889999999997655 666663
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.62 E-value=6.6 Score=40.79 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
..|..++.-+|+|..|++.++.. .+...++ +. ..-+-+..+++.+|.+|+.+++|.+|++.|
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l-~~----------------~V~~~~is~~YyvGFaylMlrRY~DAir~f 187 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGL-YT----------------KVPACHISTYYYVGFAYLMLRRYADAIRTF 187 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-Ccccchh-hc----------------cCcchheehHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999987743 3322211 00 112345678999999999999999999999
Q ss_pred HHHHh
Q 009850 200 RRALS 204 (524)
Q Consensus 200 ~~Al~ 204 (524)
...+-
T Consensus 188 ~~iL~ 192 (404)
T PF10255_consen 188 SQILL 192 (404)
T ss_pred HHHHH
Confidence 98875
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.32 E-value=20 Score=37.23 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCS-------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p-------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+..|.+++..+|+|..|++.++.. .++. ..++..+++..|-+|+.+++|.+|+..|...+-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999998753 1121 1234567788999999999999999999998865
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.11 E-value=8.2 Score=26.50 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
++|+.+|...|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677778888888888888877774
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.84 E-value=18 Score=35.09 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=55.8
Q ss_pred hhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 29 SRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD------RVDSALKDMAIVMKQQNRAEEAIEA 102 (524)
Q Consensus 29 l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p------~~~~a~~~La~~~~~~g~~~eAi~~ 102 (524)
+..+..+|.............+.+|..|+..|++++|+.+|+.+..... =....+..+..|+...|+.+..+..
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344445544444444445567899999999999999999999975422 1234566788899999999888777
Q ss_pred HHHHH
Q 009850 103 IKSLR 107 (524)
Q Consensus 103 ~~~al 107 (524)
.-+++
T Consensus 241 ~leLl 245 (247)
T PF11817_consen 241 SLELL 245 (247)
T ss_pred HHHHh
Confidence 65543
No 391
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=69.59 E-value=1.1e+02 Score=30.94 Aligned_cols=96 Identities=13% Similarity=-0.029 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----C--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINA----G--DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQESL 118 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~----~--p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~~~l 118 (524)
.++...|+..++|.+|+......++. + +.-.+.+..=..+|+.+.+..+|...+..|-... |...+..+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35677889999999999887776652 2 2233445555677888888888887777664432 32222344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
-..-|.++....+|.-|..+|-++++-
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHcc
Confidence 444466666667888888888887764
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.28 E-value=1.2e+02 Score=29.87 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=79.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC-------c---HH---HHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDR-------V---DS---ALKDMA-IVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~-------~---~~---a~~~La-~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
..+...+...||..|+..++++++.-.+ . .+ .+..+| .++..+|++.+.+.+.-+-.+.-.+-+ .
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP-p 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP-P 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC-H
Confidence 4456667788999999999999875211 1 11 133344 678899999999888777655433332 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc--HHHHHHH-----HHHHHHc
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA--TRLLGNL-----GWALMQQ 189 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~--~~a~~~L-----g~~~~~~ 189 (524)
.+.-.-..+|.+.|.+....+.-...++- |+| ..-|..+ -.++.=.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~---------------------------p~Nq~lp~y~~vaELyLl~VLlPL 171 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQD---------------------------PSNQSLPEYGTVAELYLLHVLLPL 171 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhC---------------------------cccCCchhhHHHHHHHHHHHHhcc
Confidence 44444445688999999988888777753 443 1123344 4455567
Q ss_pred CCHHHHHHHH
Q 009850 190 NNYIEAEDAY 199 (524)
Q Consensus 190 g~~~eAi~~~ 199 (524)
|.+++|++..
T Consensus 172 G~~~eAeelv 181 (309)
T PF07163_consen 172 GHFSEAEELV 181 (309)
T ss_pred ccHHHHHHHH
Confidence 9999999887
No 393
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.68 E-value=1.7e+02 Score=31.38 Aligned_cols=189 Identities=10% Similarity=0.029 Sum_probs=100.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
.|-+...+..+-.++...-.+.--...+.+.+....+- ..+..++.+|... ..++-...+++.++.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k---mal~el~q~y~en-~n~~l~~lWer~ve~---------- 127 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK---MALLELLQCYKEN-GNEQLYSLWERLVEY---------- 127 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHhc-CchhhHHHHHHHHHh----------
Confidence 44455555555556655555555666677777766544 4567788888877 556667777777776
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------hCCCcHH--HH
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS--------------------IAPDNNK--MC 213 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--------------------l~P~~~~--~~ 213 (524)
+-++...-..|+..|.+ ++-+.+..+|.+++. +-|++.+ +.
T Consensus 128 ----------------dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~ 190 (711)
T COG1747 128 ----------------DFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLR 190 (711)
T ss_pred ----------------cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHH
Confidence 33444444445554444 555566666655553 3344433 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------
Q 009850 214 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----------------- 276 (524)
Q Consensus 214 ~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----------------- 276 (524)
.+-.+...+|. ..+.-.++.+...+ ....++.++++.+...++.+..+..+.-++-.-+..
T Consensus 191 l~~kiqt~lg~-~~~~Vl~qdv~~~Y-s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i 268 (711)
T COG1747 191 LQKKIQTKLGE-GRGSVLMQDVYKKY-SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNI 268 (711)
T ss_pred HHHHHHHhhcc-chHHHHHHHHHHHh-ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcch
Confidence 11122222221 11222222221111 122355566666666666666555554444333333
Q ss_pred ---cCCHHHHHHHHhhcccCCCCC
Q 009850 277 ---QSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 277 ---~g~~~eAi~~~~~al~~~P~~ 297 (524)
-.++.+++..|+..+..+-++
T Consensus 269 ~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 269 SQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhccccHHHHHHHHHHHheeccCc
Confidence 456788888888887665543
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.57 E-value=42 Score=33.17 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.+....+..|...|.+.+|+++.++++.+ +|-+...+..+-.++...|+--.|+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------------------------dpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------------------------DPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------------------------ChhhhHHHHHHHHHHHHhccchhhh
Confidence 34445567788999999999999999998 8888889999999999999988888
Q ss_pred HHHHHHH
Q 009850 197 DAYRRAL 203 (524)
Q Consensus 197 ~~~~~Al 203 (524)
..|++.-
T Consensus 334 khyerya 340 (361)
T COG3947 334 KHYERYA 340 (361)
T ss_pred hHHHHHH
Confidence 8887653
No 395
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=67.36 E-value=1.5e+02 Score=30.12 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC---CcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAP---DNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER 255 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P---~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~ 255 (524)
|..+....+|.-|..+|-+|++-.. ++.. +-.+-.|-..++..++--..+.. +.
T Consensus 216 GIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~-------------------K~ 276 (411)
T KOG1463|consen 216 GILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA-------------------KL 276 (411)
T ss_pred cceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh-------------------HH
Confidence 4455555667777777776665321 1111 22344444555555554443331 13
Q ss_pred HHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHhhcccCCCCC
Q 009850 256 AQQMLKDLESEMMNKGGDRVE--QSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 256 al~~~p~~~~a~~~lg~~~~~--~g~~~eAi~~~~~al~~~P~~ 297 (524)
+++.......+.-..+..+.. +.+|..|+..|..-+..+|--
T Consensus 277 ~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 277 ALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred HHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 344444455555555555543 356777888888777777643
No 396
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.25 E-value=1.3e+02 Score=29.77 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSD------QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
..+|+-....+++++|+..|.+.+...-. +.+......++.+|...|++..--+.....-+... .+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~---~ft---- 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAME---DFT---- 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHH---Hhc----
Confidence 45677777889999999999999876321 12234556789999999998765444433222100 000
Q ss_pred HHHHHHhHHHHHhcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCcH------H-HHHHHHHHHHcCCHHHHH
Q 009850 158 KTARSQGKKFQVSVEQEATRLLGNLGW-ALMQQNNYIEAEDAYRRALSIAPDNN------K-MCNLGICLMKQGRIGEAK 229 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~-~~~~~g~~~eAi~~~~~Al~l~P~~~------~-~~~Lg~~~~~~G~~~eA~ 229 (524)
.|....+...|-. .-.....++.-+..+...++..-... . -+.+...+.+.|+|.+|+
T Consensus 80 --------------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysdal 145 (421)
T COG5159 80 --------------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDAL 145 (421)
T ss_pred --------------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1111111111111 11112233444444444443321111 1 356888999999999999
Q ss_pred HHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Q 009850 230 ETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS 288 (524)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~ 288 (524)
....-.+... +-....+.....|..-..+|.+..+...+...+.
T Consensus 146 alIn~ll~El---------------Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLT 189 (421)
T COG5159 146 ALINPLLHEL---------------KKYDDKINLITVHLLESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred HHHHHHHHHH---------------HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHH
Confidence 9887643222 2233344555555555666666666655544433
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.21 E-value=38 Score=34.97 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
..+.-+|+-|...|+++.|+++|-+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhh
Confidence 3444556666666666666666666
No 398
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.04 E-value=28 Score=29.69 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---------------HH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDN---------------NK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~---------------~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+..+|...++.+++-.++-+|++|+.+..+- .. -.|||..+..+|+.+-.+.+++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 5678999999999999999999998753221 11 468999999999999999999865
No 399
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.03 E-value=29 Score=32.85 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
-+.+.++..+|+...+.-++- +|.+......+=.+|.-.|+|++|...++-+-.
T Consensus 10 eLL~~~sL~dai~~a~~qVka--------------------------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKA--------------------------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhc--------------------------CCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 345678888998888887777 899988888888899999999999999999999
Q ss_pred hCCCcHH
Q 009850 205 IAPDNNK 211 (524)
Q Consensus 205 l~P~~~~ 211 (524)
+.|++..
T Consensus 64 l~p~~t~ 70 (273)
T COG4455 64 LSPQDTV 70 (273)
T ss_pred cCcccch
Confidence 9998865
No 400
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.60 E-value=1.7e+02 Score=30.32 Aligned_cols=135 Identities=9% Similarity=0.015 Sum_probs=80.2
Q ss_pred HcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 58 VDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQ------------QNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 58 ~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~------------~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
..|.+ ++++.+=.+.+..+|+....|...-.++.. +.-.++-+.+...+++.+|++- .+|+....
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY--~aW~hR~w 117 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY--GAWHHRKW 117 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH--HHHHHHHH
Confidence 34444 577777788888899887777654333322 1235556667777777777764 56666666
Q ss_pred HHHHcCC--hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHH
Q 009850 125 LYKRCGR--LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN----NYIEAEDA 198 (524)
Q Consensus 125 ~~~~~g~--~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g----~~~eAi~~ 198 (524)
++.+.+. +..=+.+.+++++. +|.+-.+|...-.+..... ...+=+++
T Consensus 118 ~L~~~p~~~~~~EL~lcek~L~~--------------------------D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 118 VLQKNPHSDWNTELQLCEKALKQ--------------------------DPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHhCCCchHHHHHHHHHHHHhc--------------------------CcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 6555543 45556666666666 6666555554444333222 24566667
Q ss_pred HHHHHhhCCCcHH-HHHHHHHHH
Q 009850 199 YRRALSIAPDNNK-MCNLGICLM 220 (524)
Q Consensus 199 ~~~Al~l~P~~~~-~~~Lg~~~~ 220 (524)
..+++.-++.|-. |.++..++.
T Consensus 172 tt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhccchhhhHHHHHHHHHH
Confidence 7777776666665 665554443
No 401
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=65.58 E-value=1.8e+02 Score=30.48 Aligned_cols=97 Identities=15% Similarity=0.033 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC----
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRA-------EEAIEAIKSLRSRC---- 110 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~-------~eAi~~~~~al~~~---- 110 (524)
..-.||..++..|||+-|...|+.+.+-.-++ +.++...|.++...+.. ++...+++.++...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 34679999999999999999999887743221 22233445555555532 23344444432221
Q ss_pred ----C--CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 111 ----S--DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 111 ----p--~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
. ... ..+....+.++...|.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a-~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYA-LRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccch-HHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 122 245556677788889888887766666544
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.96 E-value=18 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMA 87 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La 87 (524)
+++.|...|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.92 E-value=96 Score=33.82 Aligned_cols=80 Identities=11% Similarity=-0.048 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
...+++..+-.+|-.++|++ +.++ ++-.+ .+..++|+++.|.++..++ ++. .-|..||++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~-------~s~D-~d~rF---elal~lgrl~iA~~la~e~-----~s~--~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE-------LSTD-PDQRF---ELALKLGRLDIAFDLAVEA-----NSE--VKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh-------cCCC-hhhhh---hhhhhcCcHHHHHHHHHhh-----cch--HHHHHHHHHHh
Confidence 34556666666666555554 4443 23333 3456778888887765443 222 45678888888
Q ss_pred HcCChHHHHHHHHHHHHH
Q 009850 128 RCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l 145 (524)
..|++..|.++|.++-.+
T Consensus 678 ~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDL 695 (794)
T ss_pred hcccchhHHHHHHhhcch
Confidence 899999999999888655
No 404
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=64.29 E-value=1.6e+02 Score=30.55 Aligned_cols=55 Identities=11% Similarity=-0.050 Sum_probs=39.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC-----cHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDR-----VDSALKDMAI--VMKQQNRAEEAIEAIKS 105 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~-----~~~a~~~La~--~~~~~g~~~eAi~~~~~ 105 (524)
..+..++..++|..|...|..++...+. ....+..+.. .++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3555778999999999999999987532 2333444444 44556788999999986
No 405
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=63.75 E-value=9.6 Score=38.43 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=72.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
+.-.++.++++.|..-|.++++.... .. ......... + ...+...-.....+++.+-...+.+..|+..-..+
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~-~s--~~~~~e~~~--~--~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSE-QS--RDREKEQEN--R--IPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcc-cc--ccccccccc--c--cccccccccccccchHHhcccccCCCcceeccccc
Confidence 33456788999999999988876432 00 000000000 0 00112222456677889999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+..+++... ++.++..+..+.++++|++.++.+
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a 335 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKA 335 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHh
Confidence 987777766 999999999999999999999944
No 406
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.70 E-value=1.8e+02 Score=30.31 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=84.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-Cc------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHH
Q 009850 91 KQQNRAEEAIEAIKSLRSRCS-DQ------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQ 163 (524)
Q Consensus 91 ~~~g~~~eAi~~~~~al~~~p-~~------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~ 163 (524)
+...++.+|...-...+..-. .+ ....+++.+...|...|+...-...+...+....
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt---------------- 200 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT---------------- 200 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----------------
Confidence 345789999888776554321 11 1235666666777778886665555554443310
Q ss_pred hHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH---HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 164 GKKFQVSVEQ-EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP--DNNK---MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 164 ~~~~~~~~~p-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~---~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
+..+. ..+...+.|-..|...+.|+.|...-.++.--+. ++.. .+.+|.+..-+++|..|.+++-+|..
T Consensus 201 -----Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 201 -----LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred -----hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 01011 2244556677888899999999998877763221 2222 46789999999999999999998876
Q ss_pred cccC
Q 009850 238 AVAD 241 (524)
Q Consensus 238 ~~~~ 241 (524)
..|.
T Consensus 276 kapq 279 (493)
T KOG2581|consen 276 KAPQ 279 (493)
T ss_pred hCcc
Confidence 6664
No 407
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.18 E-value=1.8e+02 Score=29.57 Aligned_cols=29 Identities=3% Similarity=-0.211 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
+...+|.-|+...+++.|.-.|+++.+..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 44456677889999999999999998764
No 408
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=62.55 E-value=81 Score=37.03 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCCCcHHHH---HHHHHHHHHcCCH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQEATRLL---GNLGWALMQQNNY 192 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~---~~Lg~~~~~~g~~ 192 (524)
.++.+++..+...+.+++|.-.|+.+-++...-.++.. +....+....... .++-.... ..|..-+..++++
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql----~~~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQL----SEGKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHcccc
Confidence 45556666666666777776666665444211111111 1222222221111 22222222 5566666777777
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 193 IEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 193 ~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
-+|-....+.+. +|... -..|++-..|++|+.....+
T Consensus 1016 ~eAa~il~e~~s-d~~~a-----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS-DPEEA-----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhHHHHHHHHhc-CHHHH-----HHHHhhHhHHHHHHHHHHhc
Confidence 777777666654 33222 12233444566666655543
No 409
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.49 E-value=74 Score=35.93 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=38.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 54 NVQLVDKDPEKAIPLFWAAINAGDR-VDSALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 54 ~~~~~~g~~~~Ai~~~~~al~~~p~-~~~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
.+..++.-|.-|+.+.+.- ..+++ -.+.+...|.-+++.|++++|...|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4556777777777665442 12222 2355677899999999999999999887764
No 410
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.43 E-value=1e+02 Score=26.45 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=61.2
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHh
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR-ALS 204 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~-Al~ 204 (524)
+...+.....+.+++.++.. ++.++..+..+..+|.+. +..+.+..++. .-.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~--------------------------~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~ 69 (140)
T smart00299 17 FEKRNLLEELIPYLESALKL--------------------------NSENPALQTKLIELYAKY-DPQKEIERLDNKSNH 69 (140)
T ss_pred HHhCCcHHHHHHHHHHHHcc--------------------------CccchhHHHHHHHHHHHH-CHHHHHHHHHhcccc
Confidence 44567888888888887765 455666777777777654 44555666652 111
Q ss_pred hCCCcH--------HHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009850 205 IAPDNN--------KMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV 275 (524)
Q Consensus 205 l~P~~~--------~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 275 (524)
.+++.. -|-....+|.+.|++.+|+..+-.- .++.+.|++.+.+ ...++.|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~-------~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEH-------LGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHc-------ccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 111111 1334455556666666666665431 1334445544443 335566666665443
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.00 E-value=32 Score=29.48 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=25.7
Q ss_pred HHHHHHHHHHh--hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 194 EAEDAYRRALS--IAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 194 eAi~~~~~Al~--l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
.+.+.|..+.. +.-..+. |...|..+...|++.+|...|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666655 3344455 66677777777777777777764
No 412
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=61.75 E-value=71 Score=32.82 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIK 104 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~ 104 (524)
.-+|+.+++.++..+|.+......+..+|..+|-...|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345555555555555555555555555555555555555554
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=60.78 E-value=13 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+|+.+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355666677777777777777777654
No 414
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=59.69 E-value=14 Score=22.12 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLY 144 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~ 144 (524)
++.+...|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566677777888888777776654
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.64 E-value=20 Score=21.52 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850 190 NNYIEAEDAYRRALSIAPDNNK-MCNLGI 217 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~ 217 (524)
|+++.|...|++++...|.++. |...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 5788999999999999998887 766554
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.54 E-value=2.2e+02 Score=29.47 Aligned_cols=62 Identities=10% Similarity=-0.143 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHHHcCChHHHHHHHHHHHHH
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI--LLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~--lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
...+..++..++|..|...+..+...-|....+..+.. .|..+....++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35677788999999999999999886343321233333 344557888999999999988765
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.14 E-value=1.2e+02 Score=31.58 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCcHH--HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIA-------PDNNK--MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
..+.++-.+-...|+|..-..+-.+|.+.- +..+. .|.-|.+...+++|..|..+|-.+.
T Consensus 188 nm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 188 NMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444445555555444444444320 11111 4455555555566666666665553
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.14 E-value=1.8e+02 Score=28.33 Aligned_cols=77 Identities=14% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHhhc
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG-DRVEQSRLFDAFLGSSSI 290 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~-~~~~~g~~~eAi~~~~~a 290 (524)
+..+|..+.+.|++.+|..+|-.... ........-.+.-...-.|.....+..++. .|...++...|...+..-
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~~~~-----~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLLGTD-----PSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS-H-----HHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56677777777777777776653210 000000011122333455666666666665 577789999888876554
Q ss_pred ccC
Q 009850 291 WQP 293 (524)
Q Consensus 291 l~~ 293 (524)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 419
>PF13041 PPR_2: PPR repeat family
Probab=58.20 E-value=46 Score=22.85 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
..|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555666666666666666665544
No 420
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.21 E-value=2.5e+02 Score=29.41 Aligned_cols=205 Identities=9% Similarity=-0.003 Sum_probs=112.1
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH--HHHHHHHHHHHHHHcCChHH
Q 009850 59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QA--QESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~--~~~l~~~lg~~~~~~g~~~e 134 (524)
.+.|-.|.......--.+ ..+..+..+.++...+++..|...+.+++-.+.. +. ...+...++.++.+.+.--.
T Consensus 254 ~~~~h~al~~~~g~d~~~--svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l 331 (482)
T KOG4322|consen 254 TSYYHKALNSWFGGDYQQ--SVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACL 331 (482)
T ss_pred hhHHHHHHHHhhcchHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchh
Confidence 344444444443332222 3466777899999999999999999987766542 21 12333444555554554444
Q ss_pred HHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---
Q 009850 135 QIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--- 211 (524)
Q Consensus 135 A~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--- 211 (524)
+.-+.-.++... -+...+-.-..+-.+++..+.-.|-.+.|...+..++..---+..
T Consensus 332 ~lplaL~~~~~~--------------------sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~d 391 (482)
T KOG4322|consen 332 NLPLALMFEFKR--------------------SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDD 391 (482)
T ss_pred hHHHHHHHHHHH--------------------HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhh
Confidence 444433333320 000001111334467778888889999999999988763111100
Q ss_pred ---------HHHHHHHH-HHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 009850 212 ---------MCNLGICL-MKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF 281 (524)
Q Consensus 212 ---------~~~Lg~~~-~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 281 (524)
-|.++... ....+.+.+...++++...+ ..+.......++.+-++..|-..|+.+
T Consensus 392 rara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f---------------~kL~~he~ildv~yf~A~~yn~lGd~~ 456 (482)
T KOG4322|consen 392 RARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIF---------------YKLGCHEKILDVTYFSAYQYNHLGDSP 456 (482)
T ss_pred cceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHH---------------HHccchHHHHHHHHHHHHHHHhhcCch
Confidence 11122111 13334444555555432211 222222334467888899999999986
Q ss_pred H---HHHHHhhcccCCCCCCCc
Q 009850 282 D---AFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 282 e---Ai~~~~~al~~~P~~~~~ 300 (524)
+ +-..|+++|+--|.....
T Consensus 457 eRn~~AslFrk~~~~le~pr~~ 478 (482)
T KOG4322|consen 457 ERNLLASLFRKAWRYLELPRWL 478 (482)
T ss_pred HHHHHHHHHHHHHHhcCCcccc
Confidence 5 444589999877765543
No 421
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.02 E-value=57 Score=27.91 Aligned_cols=58 Identities=10% Similarity=0.184 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---------------DSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
+..+|...+..+++-.++-+|++|+.+..+- .....+||..++.+|+.+-.+++++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 5678888899999999999999998752111 123567888888899888888888754
No 422
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.86 E-value=1.6e+02 Score=30.81 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-----------CCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINA-----------GDRVDSALKDMAIVMKQQNRA----------EEAIEAIKSLR 107 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~-----------~p~~~~a~~~La~~~~~~g~~----------~eAi~~~~~al 107 (524)
++..|.+.+....|++|+.++-.|=+. -.+.+-.-..+.+||+.+.+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 556677888888899998887665443 223333334567888887653 23444443322
Q ss_pred H--------hC-CCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 108 S--------RC-SDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 108 ~--------~~-p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
. +. +..+. ..++...|.+.+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 11 12221 345556788889999999999999988754
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.03 E-value=54 Score=28.08 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHhCCCc------HH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHH
Q 009850 94 NRAEEAIEAIKSLRSRCSDQ------AQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKK 166 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~p~~------~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~ 166 (524)
|.-..-...+++++....++ .. ..+|..++ ...+++...|..+...
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya------~~~~~~~~if~~l~~~--------------------- 92 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA------DLSSDPREIFKFLYSK--------------------- 92 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH------TTBSHHHHHHHHHHHH---------------------
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH------HHccCHHHHHHHHHHc---------------------
Confidence 44455566777776665432 21 23333333 2333778888766554
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 167 FQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 167 ~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
.+--..+..|...|..+...|++++|...|+.++
T Consensus 93 ---~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 93 ---GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2245568889999999999999999999998875
No 424
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.77 E-value=26 Score=21.36 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
++.+...|.+.|++++|.+.|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455666778888888888888876543
No 425
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.25 E-value=27 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
|+.+-..|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566667777777777777777655
No 426
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.33 E-value=43 Score=37.26 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=79.4
Q ss_pred HcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 58 VDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQ---------NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~---------g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
+.||-++|+...-.+++. .|-.++.+...|.+|..+ +..+.|+++|+++.+..|.. ..+.+++.++.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~---~sGIN~atLL~ 331 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE---YSGINLATLLR 331 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh---hccccHHHHHH
Confidence 457888999888888876 455667777778877653 56788999999999999965 34455566666
Q ss_pred HcCC-hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHH
Q 009850 128 RCGR-LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL---MQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 128 ~~g~-~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~---~~~g~~~eAi~~~~~Al 203 (524)
..|. ++...+.-.-.+.++. +.+ +.... ....-|...|..+ .-.++|.+|+..-+...
T Consensus 332 aaG~~Fens~Elq~IgmkLn~----Llg-rKG~l-------------eklq~YWdV~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 332 AAGEHFENSLELQQIGMKLNS----LLG-RKGAL-------------EKLQEYWDVATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred HhhhhccchHHHHHHHHHHHH----Hhh-ccchH-------------HHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh
Confidence 6664 3333333322232210 000 00000 1112223333322 23579999999999999
Q ss_pred hhCCCc
Q 009850 204 SIAPDN 209 (524)
Q Consensus 204 ~l~P~~ 209 (524)
++.|-.
T Consensus 394 KLk~P~ 399 (1226)
T KOG4279|consen 394 KLKPPV 399 (1226)
T ss_pred ccCCce
Confidence 988754
No 427
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.81 E-value=80 Score=34.40 Aligned_cols=99 Identities=21% Similarity=0.203 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQI 136 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~ 136 (524)
...|+++.|...+-.+ | -+....++..+..+|-.++| +.+.++..+ . + .+..+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~A-------L~~s~D~d~-r--F---elal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQA-------LELSTDPDQ-R--F---ELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccC----c--hhhhhhHHhHhhhccchHhh-------hhcCCChhh-h--h---hhhhhcCcHHHHH
Confidence 4456666655533222 2 23345566666666655555 445555421 1 2 2234678888876
Q ss_pred HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
.+..++ ++..-|..||.+.+..|++..|.++|.++..+
T Consensus 658 ~la~e~-------------------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 658 DLAVEA-------------------------------NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHhh-------------------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 655433 45567889999999999999999999988653
No 428
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.71 E-value=2.9e+02 Score=28.77 Aligned_cols=108 Identities=11% Similarity=-0.012 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC----CHHHHHHHHHHhcccccCCCc
Q 009850 172 EQEATRLLGNLGWALMQQN--NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG----RIGEAKETLRRVKPAVADGPR 244 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g--~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G----~~~eA~~~~~~a~~~~~~~~~ 244 (524)
+|+.-.+|+.+.+++.+.+ ++..=++..+++++.+|.+.. |..+=.+..... ...+=+++..
T Consensus 105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt----------- 173 (421)
T KOG0529|consen 105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTT----------- 173 (421)
T ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHH-----------
Confidence 8999999999999999876 478999999999999999877 544333332221 2333344444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHhhcccCCCCCCCc
Q 009850 245 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVE------QSR------LFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~------~g~------~~eAi~~~~~al~~~P~~~~~ 300 (524)
+++..++.+-.+|.++..++.. .|. ...-+..-..|+-.+|.+..+
T Consensus 174 ----------~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 174 ----------KLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred ----------HHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 5666666666777777665542 231 123344566777788887773
No 429
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=52.59 E-value=2.6e+02 Score=33.19 Aligned_cols=24 Identities=21% Similarity=0.075 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
++...|.-+...+.|++|.-.|+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHH
Confidence 444455555555555555544443
No 430
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.33 E-value=90 Score=31.53 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
|.+.+..+..-.+.++...+.+.....-+.++.++...|.++.++|+.++|...|++++.+
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 3344444433345555555544443222223355667788999999999999999999998
No 431
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.69 E-value=39 Score=20.64 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
.|..+-.++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777788888888888888887765
No 432
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.62 E-value=67 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAI 73 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al 73 (524)
+...|.-+-..|++.+|+.+|++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455555556666666666555443
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.55 E-value=49 Score=30.45 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 67 PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
+..++.++..|+ +..+..++.++..+|+.++|....+++..+.|
T Consensus 132 ~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333444444453 45555556666666666666666666666666
No 434
>PRK12798 chemotaxis protein; Reviewed
Probab=51.08 E-value=3.1e+02 Score=28.66 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcC
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDR---VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCG 130 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~---~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g 130 (524)
..+...+..+|+..|+.+--..|. ...++..--.+..+.|+.+++..+-.+.+..+..+++ .+.+..+...+.+.+
T Consensus 157 ~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 157 NLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred HHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Q ss_pred ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
+-..-..+..-.-.+ +|+. ..+|..++..-.-.|+.+-|.-.-++++.+....
T Consensus 237 d~~~~~~l~~~ls~~--------------------------d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~ 290 (421)
T PRK12798 237 DEIRDARLVEILSFM--------------------------DPERQRELYLRIARAALIDGKTELARFASERALKLADPD 290 (421)
T ss_pred ccccHHHHHHHHHhc--------------------------CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCC
Q ss_pred HH-----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 210 NK-----MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 210 ~~-----~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.. ....+.+..-..++++|...+.++
T Consensus 291 ~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 291 SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred CcchHHHHHHHHHHccCcccHHHHHHHHhcC
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.61 E-value=2e+02 Score=29.08 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
.+++...|.-|++.|+-+.|.+.+.+....
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345556666666666666666665554443
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.52 E-value=4.2e+02 Score=29.67 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 175 ATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
.....+-+|.++...|+.++|...|+++.
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34566666666666677777777666653
No 437
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=49.49 E-value=3.5e+02 Score=28.72 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=130.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
.+...|.+...|+.|-..+-.+|.+++-.+.|.+...-.|-.+.+|...-.--...++|..-..+|.+++...-.- .
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l---d 110 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL---D 110 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH---h
Confidence 4455677777777777777777777777777777777667666666544433334456666666666666543321 3
Q ss_pred HHHHHHHHHHHcCCh--HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH--------
Q 009850 118 LDNILLDLYKRCGRL--DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM-------- 187 (524)
Q Consensus 118 l~~~lg~~~~~~g~~--~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~-------- 187 (524)
+|..+...-.+.+.. .++....-++.++. .. -+..+|.....|...|..+.
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv-----------------~~--~~~~e~~s~~~W~ey~~fle~~~~~~kw 171 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFV-----------------LG--CAIFEPQSENYWDEYGLFLEYIEELGKW 171 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHH-----------------Hh--cccccccccchHHHHHHHHHhccccccH
Confidence 333322221221111 12222222222220 00 02236777777777776554
Q ss_pred -HcCCHHHHHHHHHHHHhhCCCcHH--HH---------HHHHHHHHcC----CHHHHHHHHHHhccc-------c-----
Q 009850 188 -QQNNYIEAEDAYRRALSIAPDNNK--MC---------NLGICLMKQG----RIGEAKETLRRVKPA-------V----- 239 (524)
Q Consensus 188 -~~g~~~eAi~~~~~Al~l~P~~~~--~~---------~Lg~~~~~~G----~~~eA~~~~~~a~~~-------~----- 239 (524)
++.+.+.-...|.+|+..-=++.. |. |.+.+-.-.| -|..|...|++.... .
T Consensus 172 EeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~R 251 (660)
T COG5107 172 EEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLR 251 (660)
T ss_pred HHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhh
Confidence 334455566778888874333322 21 2222222222 244566666653110 0
Q ss_pred -----cC----CC----------------cCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 240 -----AD----GP----------------RGVD-SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 240 -----~~----~~----------------~~~~-~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
+. .| +... ..--.+++++...+-.++.|+.-...+...++-+.|+...+++...
T Consensus 252 t~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 252 TANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred hhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 00 01 1111 1233567888888888888888888888888888888888888777
Q ss_pred CCC
Q 009850 294 QPC 296 (524)
Q Consensus 294 ~P~ 296 (524)
.|.
T Consensus 332 sps 334 (660)
T COG5107 332 SPS 334 (660)
T ss_pred CCc
Confidence 776
No 438
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.40 E-value=1.1e+02 Score=29.29 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHH-cCCHHHHHHHHHH
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMK-QGRIGEAKETLRR 234 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~-~G~~~eA~~~~~~ 234 (524)
+..++.+..+.|+|++.+.+.++++..+++-.. ...+..+|.. .|....++..+..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~ 62 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSS 62 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhh
Confidence 467889999999999999999999999887644 5555555522 3444444444433
No 439
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.74 E-value=3.6e+02 Score=30.42 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALK-DMAIVMKQQNRAE-EAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~-~La~~~~~~g~~~-eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
+++.+|.++...|+- ..+++..-|+...+..-.+. .||.=+..+|-.+ +-.+.++..+..+..-.-..+...+|.+
T Consensus 399 alyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~ 476 (929)
T KOG2062|consen 399 ALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLL 476 (929)
T ss_pred hhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhH
Confidence 466777777666654 77788877776553322221 2344444555332 2233333344444332223455566655
Q ss_pred HHHcCCh-HHHHHHHH-HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 009850 126 YKRCGRL-DDQIALLK-HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLL--GNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 126 ~~~~g~~-~eA~~~~~-~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~--~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
.+|-. .+|++-.. -+.+ ..+-.+. ...|..+..-|+-++|-.+.++
T Consensus 477 --mlGt~~~eaiedm~~Ya~E----------------------------TQHeki~RGl~vGiaL~~ygrqe~Ad~lI~e 526 (929)
T KOG2062|consen 477 --MLGTANQEAIEDMLTYAQE----------------------------TQHEKIIRGLAVGIALVVYGRQEDADPLIKE 526 (929)
T ss_pred --hhCcCcHHHHHHHHHHhhh----------------------------hhHHHHHHHHHHhHHHHHhhhhhhhHHHHHH
Confidence 33433 34443222 1211 1122222 3456777778888889888888
Q ss_pred HHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 202 ALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 202 Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
++.-. ++. .+.+|.+|.-.|+...-...+.-
T Consensus 527 l~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~ 562 (929)
T KOG2062|consen 527 LLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHV 562 (929)
T ss_pred HhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcc
Confidence 87633 322 56788888888886654444443
No 440
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=48.01 E-value=6 Score=43.02 Aligned_cols=58 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--HhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRA--LSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~A--l~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.....+.+....|++++|+..+... ..+.+.... +..++.++...|++-+|...+-..
T Consensus 63 ~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 63 YQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344455555566666666655531 111111111 233555555666655555554443
No 441
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.97 E-value=2.9e+02 Score=27.45 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
..++..+|..|.+.++.+.+.++..+.++.. ...+..-+-.-.-..+|.+|..+.-.++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--------------------~stg~KiDv~l~kiRlg~~y~d~~vV~e~ 174 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--------------------MSTGLKIDVFLCKIRLGLIYGDRKVVEES 174 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--------------------HhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 5688899999999999999999988887651 00011112222345677777777667777
Q ss_pred HHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 196 EDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 196 i~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
++.....++...+-.. -...|.-.+...++.+|-..+-..++.+..
T Consensus 175 lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 175 LEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 7777777776544322 223466666777888888888877766644
No 442
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.77 E-value=32 Score=38.36 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=67.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcH----H-HHHHHHHHHHc--CCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850 182 LGWALMQQNNYIEAEDAYRRALSIAPDNN----K-MCNLGICLMKQ--GRIGEAKETLRRVKPAVADGPRGVDSHLKAYE 254 (524)
Q Consensus 182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~----~-~~~Lg~~~~~~--G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~ 254 (524)
=|+.++..+++.+|.--|..++.+-|.+. . ..+.+.|++.+ |+|..++....
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~--------------------- 117 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECE--------------------- 117 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchh---------------------
Confidence 36677788888888888888888877432 1 66777777665 56777766666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
-++...|....+++..+.+|...++++-|++...-.....|.+
T Consensus 118 la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 118 LALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred hhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 5666667777777777777777777777777766666777766
No 443
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.26 E-value=39 Score=26.13 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=11.8
Q ss_pred cCChHHHHHHHHHHHHH
Q 009850 129 CGRLDDQIALLKHKLYL 145 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l 145 (524)
.|+|++|+.+|.++++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46777777777777765
No 444
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=47.09 E-value=15 Score=37.18 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
+.+++.+-+..+.+..|+..-..++..++....+++.++..+..+.++++|++.++.+....|.+.
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 345667777778888888777777777788888888888888888888888888888888888775
No 445
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=46.14 E-value=50 Score=20.09 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAIN 74 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~ 74 (524)
|..+-..+.+.|+++.|..+|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 446
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C.
Probab=46.11 E-value=4.5 Score=29.63 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=18.4
Q ss_pred chhHHHHHHHHhhcCCCCCCCC
Q 009850 469 DEDFEEAIIAAVLGSTNEQPGK 490 (524)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~ 490 (524)
+++||+-+-|+|||-+.-.|++
T Consensus 39 nEEfEe~idAsvLG~t~y~G~k 60 (68)
T PF09181_consen 39 NEEFEEKIDASVLGETEYEGKK 60 (68)
T ss_dssp SHHHHHHHSS-EEEEEESSSSE
T ss_pred hHHHHhhhCceEeeeEEecCcE
Confidence 5789999999999999887775
No 447
>PRK11619 lytic murein transglycosylase; Provisional
Probab=46.02 E-value=4.7e+02 Score=29.27 Aligned_cols=112 Identities=13% Similarity=-0.055 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------ 243 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------ 243 (524)
.++.......+.+.|...+.+......-... +..+|.-....+...+|...+..+.+...+..
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHc
Confidence 3444455667788899888876555443322 34455444444335677777776533322211
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 244 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 244 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
++.+.+...+...-..........|-+|..+...|+.++|...|+.+..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344444444443333335667889999999999999999999999854
No 448
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.55 E-value=74 Score=27.94 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE 227 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e 227 (524)
+..+.....+...+..|+|.-|......++..+|++.. ...++.++..+|.-.+
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34567778888899999999999999999999999988 7888888888775443
No 449
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.40 E-value=1.2e+02 Score=26.55 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 89 VMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 89 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
++..+|+-+.-.+.+....+....++ .+...++.+|.+.|+..+|-+++++|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p--~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINP--EFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCH--HHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34455555555555555554333333 45566666677777777777777766653
No 450
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.05 E-value=36 Score=26.33 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=13.9
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 009850 92 QQNRAEEAIEAIKSLRSRC 110 (524)
Q Consensus 92 ~~g~~~eAi~~~~~al~~~ 110 (524)
..|+|++|+.+|..+++..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4578888888888877653
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.65 E-value=2e+02 Score=24.66 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA--PDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
||....+|..++... .++.+.|..+.... -..+. |...|..+...|++.+|...|+.
T Consensus 65 D~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 455556666666532 44566777666543 33444 77788999999999999988873
No 452
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.24 E-value=7e+02 Score=29.86 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINA 75 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~ 75 (524)
..-+.+|.+|...|...+|+.+|.+|..-
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 34678999999999999999999998864
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.05 E-value=3e+02 Score=28.50 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----HH-HHHHHHHH--HHcCCHHHHHHHHHH
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALSIAPDN-----NK-MCNLGICL--MKQGRIGEAKETLRR 234 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-----~~-~~~Lg~~~--~~~G~~~eA~~~~~~ 234 (524)
..+..++..++|..|...|.+++...+.. .. +..+..+| ...-++++|...+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35557889999999999999999875422 11 44555555 567789999999995
No 454
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.40 E-value=84 Score=28.89 Aligned_cols=49 Identities=22% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 192 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 192 ~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
.+..++..++.+...|+-..+.+++.++..+|+.++|....+++...+|
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455666677777778666688888888999999999888886554444
No 455
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.77 E-value=48 Score=31.71 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred HHcCChHHHHHHHHHHHHcC---CCcH---------HHHHHHHHHHHHcCCHHH-H-HHHHHHHHHh--CCCcHHHHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINAG---DRVD---------SALKDMAIVMKQQNRAEE-A-IEAIKSLRSR--CSDQAQESLDN 120 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~---p~~~---------~a~~~La~~~~~~g~~~e-A-i~~~~~al~~--~p~~~~~~l~~ 120 (524)
+..|+++.|+.+.+.+|+.+ |+.. +-...-+......|+.-+ + ...+..+... -|+.....++.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 56789999999999999974 3321 112233444445554211 1 1222222211 23445567888
Q ss_pred HHHHHHH---------HcCChHHHHHHHHHHHHHh
Q 009850 121 ILLDLYK---------RCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 121 ~lg~~~~---------~~g~~~eA~~~~~~al~l~ 146 (524)
..|..+. ..++...|+.++++|++++
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~ 208 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN 208 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC
Confidence 8888773 4567889999999999994
No 456
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.42 E-value=1.6e+02 Score=22.74 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 265 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 265 (524)
+...|.-+-..|++++|+.+|.+ ++..|..++...|+...
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~--------------aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQE--------------GIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH--------------HHHHHHHHHhhCCCHHH
Confidence 34445556688999999999995 67777788888776543
No 457
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=38.16 E-value=5.3e+02 Score=31.27 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINA 75 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~ 75 (524)
.-.+|..++..|++.+|+..|..++..
T Consensus 245 ~k~~gd~~LlaG~~~dAl~~y~~a~~~ 271 (1185)
T PF08626_consen 245 QKVLGDLYLLAGRWPDALKEYTEAIEI 271 (1185)
T ss_pred hhhhhhHHHHcCCHHHHHHHHHHHHHH
Confidence 556899999999999999999999975
No 458
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=37.71 E-value=11 Score=41.06 Aligned_cols=96 Identities=13% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAIN--AGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSL-RSRCSDQAQESLDNILL 123 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~--~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~a-l~~~p~~~~~~l~~~lg 123 (524)
..+..+..++..|++..|...+.+.-. +.+ .........|.+....|++++|+..+... ...-|......++...+
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A 105 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRA 105 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHH
Confidence 455667788999999999999987762 233 23445556788888999999999988741 11112222235556677
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKL 143 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al 143 (524)
.+|...|++-+|...+-..-
T Consensus 106 ~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 106 QAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp --------------------
T ss_pred HHHHhcCCHHHHHHHHHHHh
Confidence 88888888877776655443
No 459
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.66 E-value=83 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+...|.-+-..|++++|+.+|.+++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556666677788877777777765
No 460
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.58 E-value=1.3e+02 Score=24.75 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=11.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 009850 87 AIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 87 a~~~~~~g~~~eAi~~~~~al~~ 109 (524)
|.+-...|++..|.+...++.+.
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444455555555555555443
No 461
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=36.39 E-value=82 Score=19.43 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVD----KDPEKAIPLFWAAIN 74 (524)
Q Consensus 48 ~~~~lg~~~~~~----g~~~~Ai~~~~~al~ 74 (524)
+++.+|.++..- .+..+|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445555554431 255556665555543
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.98 E-value=4.7e+02 Score=26.08 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHHHc-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHc
Q 009850 60 KDPEKAIPLFWAAINA-GDR-----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRC 129 (524)
Q Consensus 60 g~~~~Ai~~~~~al~~-~p~-----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~ 129 (524)
..-++-++.+.+.|+. ..+ -.+++.++|..|.+.++.+.+.++..+.+...-.-.. ...-..+|.+|...
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 3445566666665543 222 3578999999999999999999999988776542210 12223455555444
Q ss_pred CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT----RLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~----~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
.-.++.++.....++. ..+. ..-...|...+...+|.+|...+-..+..
T Consensus 169 ~vV~e~lE~~~~~iEk---------------------------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 169 KVVEESLEVADDIIEK---------------------------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHHHh---------------------------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4445555555544443 1221 12234577777888999999999888765
Q ss_pred CCC
Q 009850 206 APD 208 (524)
Q Consensus 206 ~P~ 208 (524)
...
T Consensus 222 F~S 224 (412)
T COG5187 222 FES 224 (412)
T ss_pred ccc
Confidence 443
No 463
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.76 E-value=4.7e+02 Score=25.95 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=77.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----------HH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850 87 AIVMKQQNRAEEAIEAIKSLRSRCSDQ----------AQ--ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154 (524)
Q Consensus 87 a~~~~~~g~~~eAi~~~~~al~~~p~~----------~~--~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~ 154 (524)
+..+.-..+|..|++.++++++.-.++ .. ..+...-.+++.+++++.+++.+.-+..+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~--------- 112 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV--------- 112 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC---------
Confidence 444555567888888888876643111 01 112222235567889999988877655443
Q ss_pred ccHHHHHHHhHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHH-----HcCC
Q 009850 155 KRTKTARSQGKKFQVSVEQEA--TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK---MCNLGICLM-----KQGR 224 (524)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~p~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~---~~~Lg~~~~-----~~G~ 224 (524)
|+. +.++-.--..|.+.|++....+.-..=+. +|+|.. |..++..|. =+|.
T Consensus 113 ------------------pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~ 173 (309)
T PF07163_consen 113 ------------------PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGH 173 (309)
T ss_pred ------------------cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhcccc
Confidence 444 44555556678889999888887777666 666633 666666554 4799
Q ss_pred HHHHHHHHH
Q 009850 225 IGEAKETLR 233 (524)
Q Consensus 225 ~~eA~~~~~ 233 (524)
+++|.+...
T Consensus 174 ~~eAeelv~ 182 (309)
T PF07163_consen 174 FSEAEELVV 182 (309)
T ss_pred HHHHHHHHh
Confidence 999999874
No 464
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.75 E-value=2.2e+02 Score=29.13 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 95 ~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
..-+|+..++.++...|.+. .+...+..+|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~--~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNY--QLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45678888899999999887 5556778889999999999998864
No 465
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=33.49 E-value=96 Score=19.57 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=18.9
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhh
Q 009850 177 RLLGNLG--WALMQQN-----NYIEAEDAYRRALSI 205 (524)
Q Consensus 177 ~a~~~Lg--~~~~~~g-----~~~eAi~~~~~Al~l 205 (524)
.+.+.+| .++.... ++++|+.+|+++-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4667777 4444432 478888888887654
No 466
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.46 E-value=5.2e+02 Score=26.13 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~ 154 (524)
.....||.+|.+.++|..|...+... ..+. ......++..++.+|...++..+|..+..++--+..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a------- 175 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA------- 175 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh-------
Confidence 34667899999999999988776542 2222 112235667889999999999999988887743310
Q ss_pred ccHHHHHHHhHHHHHhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 155 KRTKTARSQGKKFQVSVEQEATRLL----GNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~p~~~~a~----~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+..+.... ...+.++-..++|-+|...|.+...
T Consensus 176 -----------------~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 176 -----------------ESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred -----------------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11232222 3345556666777777777766554
No 467
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.17 E-value=83 Score=23.49 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=9.1
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 009850 52 AKNVQLVDKDPEKAIPLFWAA 72 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~a 72 (524)
.|...-..|++++|+.+|.++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444433
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.15 E-value=2.1e+02 Score=24.57 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 97 EEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 97 ~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
+++.+.|.-+....-....+..+...+..+...|++.+|.+.|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456777877766655544446777888899999999999998864
No 469
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=32.50 E-value=4.1e+02 Score=24.65 Aligned_cols=97 Identities=11% Similarity=-0.000 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 44 VGDTPYVRAKNVQL-VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ-----QNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 44 ~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-----~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
..++++..||..+- -+.+|++|...|..--.-+. .+..-+.+|.-+.. .++...|++.+..+-..+...
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~---- 106 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQ---- 106 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHH----
Confidence 46677888886543 35678888887766544332 34555666654432 347889999999887755433
Q ss_pred HHHHHHHHHHH-----cCC--hHHHHHHHHHHHHH
Q 009850 118 LDNILLDLYKR-----CGR--LDDQIALLKHKLYL 145 (524)
Q Consensus 118 l~~~lg~~~~~-----~g~--~~eA~~~~~~al~l 145 (524)
....+|.++.. .++ ...|++++.++..+
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 22333444321 223 67899999988766
No 470
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.93 E-value=3.9e+02 Score=28.89 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ------ 115 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~------ 115 (524)
+|.+..+|...-.-|...+++++|+.+++-. .+...|-.+|.+.....+..-+...|..+.+++.-..-
T Consensus 569 lpisV~py~~iL~e~~sssKWeqavRLCrfv-----~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~l 643 (737)
T KOG1524|consen 569 LPISVNPYPEILHEYLSSSKWEQAVRLCRFV-----QEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKAL 643 (737)
T ss_pred EeeeccccHHHHHHHhccchHHHHHHHHHhc-----cchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhcc
Confidence 5667778888888899999999999998765 44567777777777777777777777666665531100
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHK 142 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~a 142 (524)
..--..++......|+..+|...+.++
T Consensus 644 tske~~mA~~~l~~G~~~eAe~iLl~~ 670 (737)
T KOG1524|consen 644 TSKEEQMAENSLMLGRMLEAETILLHG 670 (737)
T ss_pred CcHHHHHHHHHHHhccchhhhHHHHhc
Confidence 000113344444567777777766554
No 471
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.58 E-value=1.2e+02 Score=25.96 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
.+|..+...|++++|..+|-+|+..+|..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 45666666666666666666666666654
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.26 E-value=8.9e+02 Score=28.16 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINA----GDRVDSALKDMAIVMKQQNRA--EEAIEAIKSLRSRCSD 112 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~----~p~~~~a~~~La~~~~~~g~~--~eAi~~~~~al~~~p~ 112 (524)
|..|+..|...|++++|++.+++.... ++...+.+-..-..+..++.- +-..++-.-.+..+|.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~ 576 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPE 576 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCch
Confidence 667777777888888888887777662 333333344433444444433 4444554455555553
No 473
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=5.8e+02 Score=25.92 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
..++...+..|++-|+.+.|++.+++..+.. ...+..-+-.-....+|..|....-..+-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~kt--------------------vs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKT--------------------VSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------------------hhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 3677888999999999999999999877651 00111122233556678877776666666
Q ss_pred HHHHHHHHhhCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 196 EDAYRRALSIAPDNN----KMCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 196 i~~~~~Al~l~P~~~----~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
++..+..++...+-. --..-|.-.+...++.+|-..|-...+.+..
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 666666666443321 1223466666777888888888877666544
No 474
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.79 E-value=82 Score=24.42 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAI 73 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al 73 (524)
...|.-+=..|+|++|+.+|..++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444455555555444443
No 475
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.79 E-value=67 Score=24.81 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHH
Q 009850 94 NRAEEAIEAIKSLRS 108 (524)
Q Consensus 94 g~~~eAi~~~~~al~ 108 (524)
|+|++|..+|..++.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555544
No 476
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.69 E-value=1.7e+02 Score=32.84 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=103.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHH---HcCChHHHHHHHHHHHHHhhccHh
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYK---RCGRLDDQIALLKHKLYLIQQGLA 151 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~---~~g~~~eA~~~~~~al~l~~~~~~ 151 (524)
+++...++-..|+...+|+.-+++.+.+-.+ |+... ..+.+.++-++- +-|+-+.|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e----- 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE----- 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc-----
Confidence 4566777878888889999888888776554 32110 011111222222 3466777777777666651
Q ss_pred hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHc
Q 009850 152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ---------QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQ 222 (524)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~---------~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~ 222 (524)
.|-.++.++..|.+|-. .+..+.|+.+|++|++..|....-.|++..+...
T Consensus 274 --------------------g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 274 --------------------GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------------------CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHh
Confidence 34446677777777643 3567889999999999999876666777777777
Q ss_pred CCHHHHHHHHHHh---cccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCCHHHHHHHHhhcccCCCC
Q 009850 223 GRIGEAKETLRRV---KPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG---DRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 223 G~~~eA~~~~~~a---~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~---~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
|+.=+--.-++++ +.......|.++... .|+..|. +-.-.+++.+|+.+-+..+++.|-
T Consensus 334 G~~Fens~Elq~IgmkLn~LlgrKG~leklq---------------~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMKLNSLLGRKGALEKLQ---------------EYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhccchHHHHHHHHHHHHHhhccchHHHHH---------------HHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 7543333333332 111111111111111 1222221 223346777777777777777765
Q ss_pred CCC
Q 009850 297 KDH 299 (524)
Q Consensus 297 ~~~ 299 (524)
.+-
T Consensus 399 ~WY 401 (1226)
T KOG4279|consen 399 VWY 401 (1226)
T ss_pred eeh
Confidence 554
No 477
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.28 E-value=91 Score=31.81 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAG--------DRVDSALKDMAIVMKQQNRAEEAIEAI 103 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~a~~~La~~~~~~g~~~eAi~~~ 103 (524)
-.+..|+..+..+++++|...|..|..+. -++.++++.+|..++..++++..+-.+
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999998763 346678999999999999888766544
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.27 E-value=9.3e+02 Score=28.04 Aligned_cols=92 Identities=12% Similarity=-0.036 Sum_probs=54.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHc--------CCHHHHHHH--HHHhcccccCCCcCHHHHHHHH
Q 009850 186 LMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQ--------GRIGEAKET--LRRVKPAVADGPRGVDSHLKAY 253 (524)
Q Consensus 186 ~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~--------G~~~eA~~~--~~~a~~~~~~~~~~~~~A~~~~ 253 (524)
|......+-++.+++.++..+..... +..++..|.+. ++-+++.+. .++. ....
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl--------------~~~l 666 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL--------------LDFL 666 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH--------------HHHh
Confidence 45677888999999999987766544 34444444332 112223222 1111 1111
Q ss_pred H--------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 254 E--------RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 254 ~--------~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
+ ..++..+. ...|...+..+.++|+-++|+..|-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNG-DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 12333333 45677888888899999999988776664
No 479
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=30.13 E-value=2.5e+02 Score=21.39 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850 192 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG 271 (524)
Q Consensus 192 ~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (524)
.+.|+..+.+|+..+ ..|++++|+.+|. .++..|..++...|+....-.-..
T Consensus 3 ~~~A~~l~~~Av~~D--------------~~g~y~eA~~~Y~--------------~aie~l~~~~k~e~~~~~k~~~~~ 54 (75)
T cd02678 3 LQKAIELVKKAIEED--------------NAGNYEEALRLYQ--------------HALEYFMHALKYEKNPKSKESIRA 54 (75)
T ss_pred HHHHHHHHHHHHHHH--------------HcCCHHHHHHHHH--------------HHHHHHHHHHhhCCCHHHHHHHHH
Q ss_pred HHHHHcCCHHH
Q 009850 272 GDRVEQSRLFD 282 (524)
Q Consensus 272 ~~~~~~g~~~e 282 (524)
.+..-+.+-+.
T Consensus 55 k~~eyl~RaE~ 65 (75)
T cd02678 55 KCTEYLDRAEK 65 (75)
T ss_pred HHHHHHHHHHH
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.86 E-value=1.7e+02 Score=24.03 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+-.+..+-.||.+|...|+-+.|.+-|+.--.+.|+...
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 344668899999999999999999999998889999876
No 481
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.90 E-value=1.2e+02 Score=23.46 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+...|.-+-..|+|++|+.+|..+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666677788888887777776
No 482
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=28.82 E-value=1.3e+02 Score=30.77 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.+.+.+..+|.++++++-+...++........+.... .-.+....++.+|.+|+-..++.+|.
T Consensus 178 ~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~-----------------~~sq~v~f~YYLG~~~l~~en~heA~ 240 (413)
T COG5600 178 YIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEY-----------------QKSQVVVFHYYLGIYYLLNENFHEAF 240 (413)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcccccccccchh-----------------hhcceeehhhHHHHHHHHHHhHHHHH
Confidence 4456778889999999988877764432110000000 01123457899999999999999999
Q ss_pred HHHHHHHhhCCC
Q 009850 197 DAYRRALSIAPD 208 (524)
Q Consensus 197 ~~~~~Al~l~P~ 208 (524)
..+++|+..-|.
T Consensus 241 ~~L~~aFl~c~~ 252 (413)
T COG5600 241 LHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhChh
Confidence 999999998887
No 483
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=28.46 E-value=6.2e+02 Score=28.11 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHhCCC--------cH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKS----LRSRCSD--------QA 114 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~----al~~~p~--------~~ 114 (524)
......|...-..|++++|+.+|.-+ |+|+.+++.+.+ ++..... ..
T Consensus 415 ~i~~~~A~~~e~~g~~~dAi~Ly~La---------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~ 473 (613)
T PF04097_consen 415 EIIEQAAREAEERGRFEDAILLYHLA---------------------EEYDKVLSLLNRLLSQVLSQPSSSSLSDSERER 473 (613)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT---------------------T-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHcCccccccccchhhh
Q ss_pred HHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850 115 QESLDNILLDLYKRCGRL-----DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 115 ~~~l~~~lg~~~~~~g~~-----~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
...+...+...|...+.. ......+...+.+ .-..-++..
T Consensus 474 l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L-----------------------------------~~ff~~~~~ 518 (613)
T PF04097_consen 474 LIELAKEILERYKSNPHISSKVSRKNRETFQLLLDL-----------------------------------AEFFDLYHA 518 (613)
T ss_dssp HHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHH-----------------------------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHH-----------------------------------HHHHHHHHc
Q ss_pred CCHHHHHHHHHH
Q 009850 190 NNYIEAEDAYRR 201 (524)
Q Consensus 190 g~~~eAi~~~~~ 201 (524)
|+|++|++.+++
T Consensus 519 g~~~~AL~~i~~ 530 (613)
T PF04097_consen 519 GQYEQALDIIEK 530 (613)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
No 484
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.45 E-value=1.3e+02 Score=27.87 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
++..+......|++++|...++++ .++++.+++.+.-.|+ . +.-|.+--.+..|-+|...|.-.-
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a-----------~~~v~~Lk~~l~~~pe---l-~~ag~~~~a~QEyvEA~~l~~~l~ 96 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKA-----------SEAVEKLKRLLAGFPE---L-YFAGFVTTALQEYVEATLLYSILK 96 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-----------HHHHHHHHHHHhhhHH---H-HHHHhhcchHHHHHHHHHHHHHHh
Confidence 777788888999999999999875 2344445555555443 2 333555555567788888776655
Q ss_pred cCCCCCCCccccccccccccccccccc
Q 009850 292 QPQPCKDHILPTTNAIKTRDDFADENI 318 (524)
Q Consensus 292 ~~~P~~~~~l~~~~l~~~~q~lgd~~~ 318 (524)
...-....-+..-...|. .|+||.+.
T Consensus 97 ~~~~ps~~EL~V~~~~Yi-lGl~D~vG 122 (204)
T COG2178 97 DGRLPSPEELGVPPIAYI-LGLADAVG 122 (204)
T ss_pred cCCCCCHHHcCCCHHHHH-HHHHHHHH
Confidence 443222221111012333 66766554
No 485
>PRK09687 putative lyase; Provisional
Probab=27.43 E-value=6e+02 Score=24.96 Aligned_cols=87 Identities=6% Similarity=-0.037 Sum_probs=40.9
Q ss_pred HHHHHHHcCC----hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 52 AKNVQLVDKD----PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR-----AEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 52 lg~~~~~~g~----~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~-----~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
.+.++...|+ ..+++..+...+..+++ +......+.++-..+. ..++...+..++.-. +. .+....
T Consensus 74 A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~--~VR~~a 148 (280)
T PRK09687 74 GADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--ST--NVRFAV 148 (280)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CH--HHHHHH
Confidence 3444555554 47888888877666665 3333333333333221 123444443333322 22 222222
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLY 144 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~ 144 (524)
+..+...|+ .+|+..+..++.
T Consensus 149 ~~aLg~~~~-~~ai~~L~~~L~ 169 (280)
T PRK09687 149 AFALSVIND-EAAIPLLINLLK 169 (280)
T ss_pred HHHHhccCC-HHHHHHHHHHhc
Confidence 223333443 567777776664
No 486
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=27.05 E-value=5.1e+02 Score=24.04 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-----CC--HHHHHHHHHHHHHhCCCc
Q 009850 46 DTPYVRAKNVQLV-----DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-----NR--AEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 46 ~~~~~~lg~~~~~-----~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-----g~--~~eAi~~~~~al~~~p~~ 113 (524)
+..++.+|..++. .+++..|++.|..+-. .+.+.+-..+|.++..- ++ ...|.+++.++-.+....
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~ 145 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGE 145 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCch
Confidence 4457777765543 4678999999988876 45677888888777643 23 778999999988876654
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=25.90 E-value=8e+02 Score=26.85 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHH
Q 009850 85 DMAIVMKQQN---RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTAR 161 (524)
Q Consensus 85 ~La~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~ 161 (524)
.|-.+++..| +|--|+-.+-.+.++.|... -..++.+|.+++....
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~-----------------r~~~~~l~~~AI~sa~-------------- 310 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPG-----------------RPTPLELFNEAISSAR-------------- 310 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT-----------------S--HHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCCC-----------------CCCHHHHHHHHHHHHH--------------
Confidence 4445555554 45566666666666655431 2344566666665410
Q ss_pred HHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 162 SQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 162 ~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
.-.+..+..-|..+|-.|++.++|.+|+..|-.|-.
T Consensus 311 -------~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 311 -------TYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -------HHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------HHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 001334455677888889999999999998887754
No 488
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.86 E-value=3.1e+02 Score=22.55 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCC
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGR 224 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~ 224 (524)
.....|.+....|+|..|.+...++-+. .+++. +..-+.+-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~-~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL-SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC
Confidence 4456788888999999999999999775 44444 5545666666654
No 489
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.68 E-value=7.1e+02 Score=25.23 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc-HHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850 64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQ-AQESLDNILLDLYKRCGRLDDQIALLK 140 (524)
Q Consensus 64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~-~~~~l~~~lg~~~~~~g~~~eA~~~~~ 140 (524)
.-++++++-....|+..++++.++...+..|+|..|-.++-....+. |+- ....+|..++. -.-..+|+.|.+-+.
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlAS-EIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLAS-EILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHHHhhHHHHHHHHH
Confidence 34445555555678888999999999999999999988766544443 332 11223333331 123467888888777
Q ss_pred HHHHHhhccHh---------------------hhc-c-cHHHHHHHh--HHHHHhcCCCcHHHHHHHHHHHHHc-CCHHH
Q 009850 141 HKLYLIQQGLA---------------------FNG-K-RTKTARSQG--KKFQVSVEQEATRLLGNLGWALMQQ-NNYIE 194 (524)
Q Consensus 141 ~al~l~~~~~~---------------------~~~-~-~~~~a~~~~--~~~~~~~~p~~~~a~~~Lg~~~~~~-g~~~e 194 (524)
+.-+....... +++ + +.....-+. .-+.-.+...-+..+..|+.+..-. .+...
T Consensus 192 rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~ 271 (432)
T KOG2758|consen 192 RLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRN 271 (432)
T ss_pred HHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHH
Confidence 65443211100 111 1 111111111 1111222333455666666665554 67778
Q ss_pred HHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 195 AEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 195 Ai~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
+++.+-++++.....-. ....-.|+.-.-++++|...+++..
T Consensus 272 ~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCe 315 (432)
T KOG2758|consen 272 RLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECE 315 (432)
T ss_pred HHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHH
Confidence 88888888876544322 4455566667778999988888753
No 490
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.48 E-value=7.2e+02 Score=25.19 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----c--HH---HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD----N--NK---MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~----~--~~---~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
......|+.+|.+.++|..|...+.-. .++.. + .. +..+|..|.+.++..+|..+..++
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 457789999999999999998877533 22221 1 11 567999999999999999999976
No 491
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.92 E-value=1.9e+02 Score=24.72 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDR 78 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~ 78 (524)
.+|..++..|++++|..+|-+|+...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555544
No 492
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.62 E-value=1.6e+02 Score=33.04 Aligned_cols=99 Identities=14% Similarity=0.037 Sum_probs=55.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHH--HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHH
Q 009850 87 AIVMKQQNRAEEAIEAIKSLRSRCSDQAQ--ESLDNILLDLYK--RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARS 162 (524)
Q Consensus 87 a~~~~~~g~~~eAi~~~~~al~~~p~~~~--~~l~~~lg~~~~--~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~ 162 (524)
|..+++.+++.+|.--|..++.+-|.+.. .......+.+|+ ..|+|..++.--.-++..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~----------------- 122 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES----------------- 122 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc-----------------
Confidence 45556666666666666666666663211 122223333333 345566665555555544
Q ss_pred HhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 163 QGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 163 ~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.|....+++..+.+|...++++-|++...-.....|.+..
T Consensus 123 ---------~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 123 ---------QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred ---------cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 5666666666666666666666666666666666666644
No 493
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.38 E-value=2.7e+02 Score=29.66 Aligned_cols=53 Identities=17% Similarity=0.013 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEE 98 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~e 98 (524)
.+....+|...+.+|+|.-+.+++.+++-.+|++..+....+.++.++|--.|
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 34566777788888888888888888888888888888888888888774333
No 494
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=23.81 E-value=9.8e+02 Score=26.18 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhc
Q 009850 94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSV 171 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 171 (524)
|+.++|+..+++-..-.+... .....+.++...+ .-..=..+|+.++.+
T Consensus 323 ~~l~eal~~~e~~c~~~~~~l---pi~~~~~lle~~d~~~~~~l~~~~e~~~~~-------------------------- 373 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCAL---PIRLRAHLLEYFDQNNSSVLSSCLEDCLKK-------------------------- 373 (547)
T ss_pred ccHHHHHHHHHHhccCCCccc---hHHHHHHHHHHhCcccHHHHHHHHHHHhcC--------------------------
Confidence 678888777766433222221 1122233333344 344455667766666
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHh
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRA---LSIAPDNNKMCNLGICLMK-QGRIGEAKETLRRV 235 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A---l~l~P~~~~~~~Lg~~~~~-~G~~~eA~~~~~~a 235 (524)
+|........+...+.. +..+...++-. +.+.|..+.|..+..|+.+ .++++.-.+....+
T Consensus 374 ~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 374 DPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred CCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHH
Confidence 67665555444444433 44555555522 3345777779999999988 66766444445544
No 495
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=23.75 E-value=5e+02 Score=22.79 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 46 DTPYVRAKNVQL-VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 46 ~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
.+-|+.+|.-++ .+|+-++-...+....+-+.-+++.+..+|.+|.+.|+..+|-+++.+|-+..-
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 345777776554 456666666666666655666789999999999999999999999999876543
No 496
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.05 E-value=7.5e+02 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
-+++..+..+|..+...+++.+|..+|-.
T Consensus 124 ~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 124 YGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 45678888888888888888888888753
No 497
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=22.93 E-value=1.5e+02 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+.|..+-..|+.++|+.+|++++.
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.92 E-value=2.4e+02 Score=23.21 Aligned_cols=36 Identities=6% Similarity=0.206 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
-+.++-.||.+|...|+-+.|...|+.--.+.|.+.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 345667788888888888888888888777888764
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.67 E-value=2.4e+02 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=14.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHH
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMA 87 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La 87 (524)
++++.|.+++|.+.+++... +|+.......|.
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 44555555555555555544 444433333333
No 500
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.62 E-value=5.5e+02 Score=28.25 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850 59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL 138 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~ 138 (524)
....+.+....+.-+..........+..+..+...|+.+.|-.+|++.+..+|++.+ +.++.-+.+.|-..+|...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEAR----YEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchH----HHHHHHHHhhhhhhHHHHH
Confidence 344555555555544444445555666677777777777888888887777777542 2334445566666666665
Q ss_pred HH
Q 009850 139 LK 140 (524)
Q Consensus 139 ~~ 140 (524)
++
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 55
Done!