Query 009850
Match_columns 524
No_of_seqs 555 out of 3526
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 2.9E-26 9.9E-31 217.3 24.7 199 43-291 2-212 (217)
2 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-25 4.2E-30 230.6 25.5 261 38-301 25-308 (388)
3 1w3b_A UDP-N-acetylglucosamine 99.9 4.3E-25 1.5E-29 226.6 26.9 262 37-301 58-342 (388)
4 3hym_B Cell division cycle pro 99.9 1.5E-23 5.2E-28 208.3 29.7 232 42-301 52-307 (330)
5 4eqf_A PEX5-related protein; a 99.9 1.4E-24 4.6E-29 220.7 21.6 230 46-299 65-316 (365)
6 2h6f_A Protein farnesyltransfe 99.9 3E-24 1E-28 221.2 23.4 226 44-298 95-353 (382)
7 3ieg_A DNAJ homolog subfamily 99.9 3.1E-23 1.1E-27 208.1 29.9 232 40-299 31-307 (359)
8 3ieg_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 203.8 32.8 243 31-301 55-343 (359)
9 3hym_B Cell division cycle pro 99.9 1.3E-23 4.6E-28 208.7 23.7 234 40-301 16-273 (330)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-22 3.9E-27 211.9 31.7 260 40-301 54-366 (450)
11 1fch_A Peroxisomal targeting s 99.9 1.5E-22 5.1E-27 205.0 30.1 228 46-297 64-318 (368)
12 3uq3_A Heat shock protein STI1 99.9 7.3E-23 2.5E-27 196.0 26.1 226 46-294 5-237 (258)
13 3vtx_A MAMA; tetratricopeptide 99.9 7.4E-23 2.5E-27 187.3 24.5 165 43-235 2-167 (184)
14 3cv0_A Peroxisome targeting si 99.9 4.5E-22 1.5E-26 197.4 28.7 249 47-298 22-320 (327)
15 3u4t_A TPR repeat-containing p 99.9 2.8E-23 9.4E-28 201.5 19.3 229 46-301 3-258 (272)
16 2q7f_A YRRB protein; TPR, prot 99.9 1.1E-22 3.9E-27 193.3 22.3 208 45-301 22-230 (243)
17 4eqf_A PEX5-related protein; a 99.9 9.9E-23 3.4E-27 206.9 23.0 252 31-292 83-355 (365)
18 4gyw_A UDP-N-acetylglucosamine 99.9 2.2E-23 7.6E-28 230.9 19.3 163 43-233 6-169 (723)
19 2xpi_A Anaphase-promoting comp 99.9 4.7E-22 1.6E-26 215.1 28.0 272 27-301 286-587 (597)
20 2pl2_A Hypothetical conserved 99.9 1.3E-22 4.5E-27 192.0 19.9 175 77-301 2-188 (217)
21 2ho1_A Type 4 fimbrial biogene 99.9 1.1E-21 3.8E-26 188.1 26.6 206 46-300 37-245 (252)
22 3vtx_A MAMA; tetratricopeptide 99.9 6E-22 2E-26 181.3 23.2 173 78-299 3-176 (184)
23 3fp2_A TPR repeat-containing p 99.9 6.8E-22 2.3E-26 210.6 26.8 225 48-301 245-499 (537)
24 2xpi_A Anaphase-promoting comp 99.9 4.2E-22 1.4E-26 215.5 25.2 249 49-301 275-553 (597)
25 2vq2_A PILW, putative fimbrial 99.9 2.5E-21 8.5E-26 181.3 26.6 208 43-299 5-217 (225)
26 4abn_A Tetratricopeptide repea 99.9 4.6E-22 1.6E-26 211.0 22.7 201 40-290 96-318 (474)
27 2gw1_A Mitochondrial precursor 99.9 7.4E-22 2.5E-26 208.7 21.6 230 43-301 234-486 (514)
28 4i17_A Hypothetical protein; T 99.9 4.6E-21 1.6E-25 181.8 24.2 200 43-275 4-225 (228)
29 3fp2_A TPR repeat-containing p 99.9 5.5E-21 1.9E-25 203.6 27.5 130 171-301 272-415 (537)
30 2h6f_A Protein farnesyltransfe 99.9 2.1E-21 7.2E-26 199.9 22.7 212 37-277 122-366 (382)
31 2gw1_A Mitochondrial precursor 99.9 4.1E-21 1.4E-25 203.0 24.5 252 46-301 6-375 (514)
32 4gyw_A UDP-N-acetylglucosamine 99.9 1.1E-21 3.7E-26 217.4 20.8 160 75-262 4-177 (723)
33 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.8E-21 3E-25 183.7 21.4 227 27-299 19-250 (275)
34 1fch_A Peroxisomal targeting s 99.9 2.9E-21 9.8E-26 195.5 18.6 234 55-319 34-304 (368)
35 4g1t_A Interferon-induced prot 99.9 1.7E-20 5.7E-25 197.1 20.7 269 30-301 155-467 (472)
36 2q7f_A YRRB protein; TPR, prot 99.9 1.6E-19 5.4E-24 171.5 25.5 202 28-278 38-241 (243)
37 4g1t_A Interferon-induced prot 99.9 1.4E-19 4.8E-24 190.0 27.3 251 45-299 50-369 (472)
38 1ouv_A Conserved hypothetical 99.8 3.7E-19 1.3E-23 173.4 27.2 219 43-299 3-257 (273)
39 2y4t_A DNAJ homolog subfamily 99.8 1.2E-19 4E-24 189.0 25.1 198 51-276 148-375 (450)
40 3mkr_A Coatomer subunit epsilo 99.8 2E-19 6.8E-24 178.3 24.9 202 46-301 65-272 (291)
41 4i17_A Hypothetical protein; T 99.8 7.9E-20 2.7E-24 173.2 20.6 177 76-301 3-217 (228)
42 3qky_A Outer membrane assembly 99.8 9.7E-20 3.3E-24 176.6 21.2 212 41-282 10-250 (261)
43 3nf1_A KLC 1, kinesin light ch 99.8 1.3E-20 4.6E-25 185.4 14.3 237 42-296 23-310 (311)
44 4abn_A Tetratricopeptide repea 99.8 6.1E-20 2.1E-24 194.6 19.6 192 60-301 82-295 (474)
45 3uq3_A Heat shock protein STI1 99.8 5.3E-19 1.8E-23 169.0 23.0 177 30-235 22-233 (258)
46 3u4t_A TPR repeat-containing p 99.8 1.7E-19 5.8E-24 174.6 19.7 221 29-278 19-269 (272)
47 2pzi_A Probable serine/threoni 99.8 7.7E-20 2.6E-24 202.4 18.3 197 42-291 390-603 (681)
48 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.4E-19 1.9E-23 171.0 21.9 202 32-287 62-269 (275)
49 2ond_A Cleavage stimulation fa 99.8 1E-18 3.5E-23 174.1 24.0 216 37-300 41-277 (308)
50 3urz_A Uncharacterized protein 99.8 3E-19 1E-23 167.7 17.9 168 45-240 3-188 (208)
51 3mkr_A Coatomer subunit epsilo 99.8 3.7E-18 1.3E-22 169.1 25.9 191 42-288 97-289 (291)
52 3as5_A MAMA; tetratricopeptide 99.8 2E-18 6.7E-23 156.0 21.3 168 46-241 8-176 (186)
53 2ho1_A Type 4 fimbrial biogene 99.8 1.2E-17 4.1E-22 159.8 27.2 169 38-234 63-234 (252)
54 4ga2_A E3 SUMO-protein ligase 99.8 8.4E-20 2.9E-24 162.5 10.3 146 51-224 2-149 (150)
55 4a1s_A PINS, partner of inscut 99.8 1E-18 3.5E-23 179.8 19.9 232 46-297 48-336 (411)
56 3sf4_A G-protein-signaling mod 99.8 8.2E-19 2.8E-23 179.3 18.8 103 44-146 7-117 (406)
57 3ulq_A Response regulator aspa 99.8 8.2E-19 2.8E-23 179.9 17.8 227 49-296 106-371 (383)
58 1qqe_A Vesicular transport pro 99.8 1.7E-18 5.7E-23 171.4 19.4 215 48-299 39-275 (292)
59 3qky_A Outer membrane assembly 99.8 3E-18 1E-22 166.0 20.1 183 73-299 8-230 (261)
60 4a1s_A PINS, partner of inscut 99.8 8.8E-19 3E-23 180.3 17.2 239 39-297 75-376 (411)
61 2vq2_A PILW, putative fimbrial 99.8 3.8E-17 1.3E-21 152.6 26.7 176 31-234 26-207 (225)
62 3as5_A MAMA; tetratricopeptide 99.8 5.8E-18 2E-22 152.8 19.9 173 79-300 7-180 (186)
63 3ro2_A PINS homolog, G-protein 99.8 2.1E-18 7.2E-23 170.5 18.2 227 47-294 6-293 (338)
64 3urz_A Uncharacterized protein 99.8 4.1E-18 1.4E-22 159.9 18.9 169 79-297 3-190 (208)
65 3q15_A PSP28, response regulat 99.8 4.9E-18 1.7E-22 173.9 20.0 225 48-293 103-365 (378)
66 3sf4_A G-protein-signaling mod 99.8 1.6E-18 5.4E-23 177.1 15.8 249 29-297 25-340 (406)
67 3ro2_A PINS homolog, G-protein 99.8 2.6E-18 8.8E-23 169.8 16.5 253 30-297 22-336 (338)
68 4ga2_A E3 SUMO-protein ligase 99.8 6.4E-19 2.2E-23 156.8 10.7 146 85-279 2-149 (150)
69 3edt_B KLC 2, kinesin light ch 99.8 1.2E-18 4E-23 168.5 12.8 219 57-293 12-281 (283)
70 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.5E-17 8.6E-22 156.3 20.8 189 45-242 3-217 (225)
71 3cv0_A Peroxisome targeting si 99.8 8.3E-18 2.8E-22 166.5 17.5 193 79-299 20-241 (327)
72 2ond_A Cleavage stimulation fa 99.8 4.5E-17 1.5E-21 162.2 21.8 183 63-294 33-233 (308)
73 2r5s_A Uncharacterized protein 99.8 5.3E-18 1.8E-22 154.5 13.1 162 46-236 6-171 (176)
74 3qou_A Protein YBBN; thioredox 99.7 2.5E-17 8.4E-22 162.7 18.1 168 41-236 112-282 (287)
75 2pzi_A Probable serine/threoni 99.7 1.4E-17 4.7E-22 184.4 17.2 175 74-301 388-571 (681)
76 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.6E-16 5.4E-21 150.8 21.0 175 79-300 3-220 (225)
77 4gco_A Protein STI-1; structur 99.7 4.2E-17 1.4E-21 140.6 15.3 120 72-219 5-125 (126)
78 1qqe_A Vesicular transport pro 99.7 1.2E-16 4E-21 158.1 19.6 183 61-299 32-234 (292)
79 3dra_A Protein farnesyltransfe 99.7 8.4E-16 2.9E-20 152.7 24.6 216 37-298 58-293 (306)
80 1ouv_A Conserved hypothetical 99.7 1.6E-15 5.6E-20 147.4 25.5 199 29-264 22-256 (273)
81 3qou_A Protein YBBN; thioredox 99.7 1.9E-16 6.6E-21 156.3 19.1 169 75-292 112-283 (287)
82 2vsy_A XCC0866; transferase, g 99.7 1.6E-16 5.3E-21 172.0 19.7 156 59-242 2-161 (568)
83 2r5s_A Uncharacterized protein 99.7 4E-17 1.4E-21 148.7 11.5 166 77-292 3-172 (176)
84 4gco_A Protein STI-1; structur 99.7 2.4E-16 8.3E-21 135.7 15.0 118 41-186 8-125 (126)
85 3gyz_A Chaperone protein IPGC; 99.7 4.9E-17 1.7E-21 144.9 9.7 119 64-210 20-138 (151)
86 3edt_B KLC 2, kinesin light ch 99.7 4.9E-16 1.7E-20 149.9 16.5 196 24-237 19-280 (283)
87 1hz4_A MALT regulatory protein 99.7 9.7E-15 3.3E-19 148.5 25.1 231 47-295 15-284 (373)
88 2fo7_A Synthetic consensus TPR 99.7 6.7E-15 2.3E-19 124.9 19.2 135 47-209 2-136 (136)
89 2xm6_A Protein corresponding t 99.7 8.3E-14 2.8E-18 147.6 31.9 119 172-294 251-397 (490)
90 2vsy_A XCC0866; transferase, g 99.7 1.5E-15 5.2E-20 164.1 18.8 158 93-299 2-163 (568)
91 2xm6_A Protein corresponding t 99.7 5.6E-14 1.9E-18 148.9 30.5 239 43-294 36-326 (490)
92 2ooe_A Cleavage stimulation fa 99.7 5.6E-15 1.9E-19 158.2 21.9 214 37-298 263-497 (530)
93 4f3v_A ESX-1 secretion system 99.6 1.7E-16 5.9E-21 154.6 8.8 201 49-299 10-242 (282)
94 1p5q_A FKBP52, FK506-binding p 99.6 2.4E-17 8.4E-22 166.6 2.2 198 59-292 78-293 (336)
95 3gyz_A Chaperone protein IPGC; 99.6 6.7E-16 2.3E-20 137.5 11.2 113 99-239 21-134 (151)
96 2vgx_A Chaperone SYCD; alterna 99.6 1.1E-15 3.9E-20 135.4 12.4 120 64-211 5-124 (148)
97 2c2l_A CHIP, carboxy terminus 99.6 5.1E-15 1.7E-19 145.6 17.9 191 43-237 1-198 (281)
98 3nf1_A KLC 1, kinesin light ch 99.6 6.1E-15 2.1E-19 144.6 18.4 178 42-237 65-306 (311)
99 3dra_A Protein farnesyltransfe 99.6 5.2E-14 1.8E-18 139.8 23.5 189 57-294 43-251 (306)
100 1hz4_A MALT regulatory protein 99.6 5.1E-14 1.8E-18 143.1 24.1 228 48-296 55-325 (373)
101 1p5q_A FKBP52, FK506-binding p 99.6 7.9E-16 2.7E-20 155.5 10.4 152 58-235 125-291 (336)
102 2ifu_A Gamma-SNAP; membrane fu 99.6 6.1E-15 2.1E-19 146.8 16.5 178 84-299 40-229 (307)
103 2ooe_A Cleavage stimulation fa 99.6 1.8E-14 6.3E-19 154.2 21.4 188 63-299 255-460 (530)
104 2xcb_A PCRH, regulatory protei 99.6 2.5E-15 8.4E-20 131.7 11.5 124 67-218 5-129 (142)
105 3rjv_A Putative SEL1 repeat pr 99.6 1.9E-14 6.4E-19 135.4 18.0 173 64-293 4-197 (212)
106 3dss_A Geranylgeranyl transfer 99.6 7.6E-14 2.6E-18 139.6 22.9 206 57-297 40-271 (331)
107 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.3E-14 1.1E-18 132.3 18.9 148 48-210 8-155 (213)
108 3ulq_A Response regulator aspa 99.6 1.8E-14 6E-19 147.4 18.6 170 45-235 142-332 (383)
109 2ifu_A Gamma-SNAP; membrane fu 99.6 1.4E-14 4.7E-19 144.2 17.2 172 48-241 38-226 (307)
110 2fo7_A Synthetic consensus TPR 99.6 7.6E-14 2.6E-18 118.3 18.5 130 81-238 2-132 (136)
111 1dce_A Protein (RAB geranylger 99.6 5.5E-15 1.9E-19 159.6 14.1 206 57-297 39-271 (567)
112 1a17_A Serine/threonine protei 99.6 9E-14 3.1E-18 123.4 19.0 96 48-145 15-110 (166)
113 3dss_A Geranylgeranyl transfer 99.6 4.5E-13 1.5E-17 134.0 24.9 224 37-299 55-310 (331)
114 2vgx_A Chaperone SYCD; alterna 99.6 1.3E-14 4.5E-19 128.5 12.3 115 99-241 6-121 (148)
115 3upv_A Heat shock protein STI1 99.6 7.2E-14 2.5E-18 119.1 16.4 97 47-145 5-101 (126)
116 3rjv_A Putative SEL1 repeat pr 99.6 2.2E-13 7.4E-18 128.0 21.0 158 44-235 16-194 (212)
117 3upv_A Heat shock protein STI1 99.6 8E-14 2.7E-18 118.9 16.1 87 38-126 30-122 (126)
118 2e2e_A Formate-dependent nitri 99.6 3.6E-14 1.2E-18 128.5 14.3 127 57-211 21-150 (177)
119 2qfc_A PLCR protein; TPR, HTH, 99.6 2.9E-13 9.9E-18 133.4 21.7 167 47-236 76-264 (293)
120 1a17_A Serine/threonine protei 99.6 1.9E-13 6.7E-18 121.2 18.3 129 79-235 12-143 (166)
121 2c2l_A CHIP, carboxy terminus 99.6 8.9E-15 3.1E-19 143.9 10.2 185 77-295 1-201 (281)
122 2fbn_A 70 kDa peptidylprolyl i 99.5 1.4E-14 4.6E-19 134.2 10.3 154 50-229 8-176 (198)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.5E-13 8.4E-18 126.4 18.8 125 80-235 6-147 (213)
124 2lni_A Stress-induced-phosphop 99.5 1.2E-13 4.3E-18 117.5 15.4 102 42-145 12-113 (133)
125 3q15_A PSP28, response regulat 99.5 1.7E-13 6E-18 139.9 19.2 170 45-235 140-329 (378)
126 2xcb_A PCRH, regulatory protei 99.5 3.1E-14 1.1E-18 124.7 11.4 113 101-241 5-118 (142)
127 2vyi_A SGTA protein; chaperone 99.5 1.4E-13 4.7E-18 116.4 14.9 121 77-225 9-130 (131)
128 3sz7_A HSC70 cochaperone (SGT) 99.5 1.1E-13 3.9E-18 123.9 15.1 117 76-220 7-124 (164)
129 3e4b_A ALGK; tetratricopeptide 99.5 3.2E-13 1.1E-17 142.0 20.9 211 46-295 141-389 (452)
130 2lni_A Stress-induced-phosphop 99.5 1.7E-13 5.9E-18 116.6 15.2 92 38-131 42-133 (133)
131 3u3w_A Transcriptional activat 99.5 1.7E-13 5.8E-18 135.1 17.1 169 49-236 78-264 (293)
132 3q7a_A Farnesyltransferase alp 99.5 8.1E-13 2.8E-17 132.7 22.1 190 49-280 57-258 (349)
133 2qfc_A PLCR protein; TPR, HTH, 99.5 5.8E-13 2E-17 131.3 20.7 181 77-293 72-266 (293)
134 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.2E-14 4.1E-19 153.1 8.5 148 58-231 246-407 (457)
135 2vyi_A SGTA protein; chaperone 99.5 5.1E-13 1.8E-17 112.8 16.9 120 45-192 11-130 (131)
136 2fbn_A 70 kDa peptidylprolyl i 99.5 2.8E-14 9.5E-19 132.1 9.7 164 80-292 4-185 (198)
137 3sz7_A HSC70 cochaperone (SGT) 99.5 2.8E-13 9.6E-18 121.3 15.5 115 45-187 10-124 (164)
138 3q7a_A Farnesyltransferase alp 99.5 1.3E-12 4.4E-17 131.3 21.5 217 37-296 79-335 (349)
139 2e2e_A Formate-dependent nitri 99.5 2.5E-13 8.5E-18 122.9 14.5 125 90-242 20-148 (177)
140 1na0_A Designed protein CTPR3; 99.5 1.5E-12 5E-17 109.0 18.0 116 80-223 9-125 (125)
141 3u3w_A Transcriptional activat 99.5 6.6E-13 2.2E-17 130.8 16.6 174 83-294 78-267 (293)
142 4gcn_A Protein STI-1; structur 99.5 1.1E-12 3.6E-17 112.8 15.6 100 46-145 8-112 (127)
143 1xi4_A Clathrin heavy chain; a 99.5 1.9E-12 6.5E-17 147.3 21.9 228 53-312 1083-1328(1630)
144 4gcn_A Protein STI-1; structur 99.5 5.8E-13 2E-17 114.5 13.9 112 78-210 6-117 (127)
145 4f3v_A ESX-1 secretion system 99.5 8.7E-14 3E-18 135.5 9.6 189 30-270 23-247 (282)
146 3q49_B STIP1 homology and U bo 99.5 8.4E-13 2.9E-17 113.6 14.9 105 76-208 5-109 (137)
147 1na0_A Designed protein CTPR3; 99.5 3.5E-12 1.2E-16 106.7 17.9 117 46-190 9-125 (125)
148 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.7E-14 2E-18 147.9 8.2 195 61-291 201-413 (457)
149 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-12 1.1E-16 134.2 20.9 225 32-294 93-352 (452)
150 2hr2_A Hypothetical protein; a 99.5 3.1E-13 1.1E-17 120.0 10.9 112 176-301 11-139 (159)
151 3rkv_A Putative peptidylprolyl 99.5 7.6E-13 2.6E-17 118.2 13.7 120 46-193 11-149 (162)
152 1b89_A Protein (clathrin heavy 99.4 2E-14 6.7E-19 147.9 3.4 216 45-313 31-256 (449)
153 3q49_B STIP1 homology and U bo 99.4 1.6E-12 5.5E-17 111.8 14.8 103 42-146 5-107 (137)
154 1elw_A TPR1-domain of HOP; HOP 99.4 3.7E-12 1.3E-16 105.5 16.6 111 80-218 4-115 (118)
155 1hxi_A PEX5, peroxisome target 99.4 9.9E-13 3.4E-17 112.0 13.0 95 49-145 20-114 (121)
156 3gw4_A Uncharacterized protein 99.4 1.6E-12 5.6E-17 119.4 15.5 158 56-236 2-174 (203)
157 3rkv_A Putative peptidylprolyl 99.4 1E-12 3.4E-17 117.4 13.6 118 79-224 10-147 (162)
158 1elw_A TPR1-domain of HOP; HOP 99.4 3.8E-12 1.3E-16 105.5 16.0 113 46-186 4-116 (118)
159 1hxi_A PEX5, peroxisome target 99.4 9.4E-13 3.2E-17 112.2 12.1 86 29-114 33-119 (121)
160 4b4t_Q 26S proteasome regulato 99.4 6.8E-12 2.3E-16 129.7 20.3 211 46-294 4-246 (434)
161 2hr2_A Hypothetical protein; a 99.4 1.2E-12 4.2E-17 116.1 12.3 101 46-148 11-134 (159)
162 2dba_A Smooth muscle cell asso 99.4 4.9E-12 1.7E-16 109.8 16.0 103 41-145 23-128 (148)
163 3gw4_A Uncharacterized protein 99.4 1.4E-12 4.7E-17 119.9 12.8 171 90-297 2-180 (203)
164 1wao_1 Serine/threonine protei 99.4 9.7E-14 3.3E-18 147.0 5.0 134 48-209 8-154 (477)
165 2xev_A YBGF; tetratricopeptide 99.4 9.7E-12 3.3E-16 105.7 16.1 118 48-191 4-125 (129)
166 2dba_A Smooth muscle cell asso 99.4 8.3E-12 2.8E-16 108.3 15.6 92 32-125 47-142 (148)
167 2if4_A ATFKBP42; FKBP-like, al 99.4 5.2E-13 1.8E-17 134.9 8.4 153 45-242 178-332 (338)
168 1elr_A TPR2A-domain of HOP; HO 99.4 6.3E-12 2.2E-16 106.2 13.0 116 79-223 3-126 (131)
169 2kck_A TPR repeat; tetratricop 99.4 3.3E-12 1.1E-16 104.9 10.7 106 76-209 2-110 (112)
170 2kck_A TPR repeat; tetratricop 99.4 3.8E-12 1.3E-16 104.6 10.9 106 172-298 2-111 (112)
171 1dce_A Protein (RAB geranylger 99.4 9.2E-12 3.1E-16 134.4 16.9 163 37-227 54-244 (567)
172 2xev_A YBGF; tetratricopeptide 99.3 2.5E-11 8.4E-16 103.1 15.7 113 81-219 3-120 (129)
173 1elr_A TPR2A-domain of HOP; HO 99.3 8.8E-12 3E-16 105.3 12.8 118 46-190 4-126 (131)
174 3ro3_A PINS homolog, G-protein 99.3 9.5E-12 3.3E-16 108.8 13.3 142 47-208 10-161 (164)
175 1ihg_A Cyclophilin 40; ppiase 99.3 1.1E-11 3.9E-16 126.7 15.3 125 46-198 223-363 (370)
176 3mv2_B Coatomer subunit epsilo 99.3 7.5E-11 2.6E-15 116.3 20.1 168 43-242 97-286 (310)
177 3mv2_B Coatomer subunit epsilo 99.3 3E-11 1E-15 119.2 17.1 193 65-301 85-290 (310)
178 1wao_1 Serine/threonine protei 99.3 2E-12 6.9E-17 136.8 9.3 135 118-299 8-156 (477)
179 1ihg_A Cyclophilin 40; ppiase 99.3 1.4E-11 4.8E-16 126.0 14.7 124 80-231 223-363 (370)
180 2if4_A ATFKBP42; FKBP-like, al 99.3 2E-12 6.9E-17 130.6 7.6 143 77-264 176-333 (338)
181 3k9i_A BH0479 protein; putativ 99.3 6.8E-12 2.3E-16 105.7 7.8 86 58-145 2-90 (117)
182 1zu2_A Mitochondrial import re 99.3 1.3E-11 4.5E-16 109.3 9.4 81 128-234 14-116 (158)
183 3ro3_A PINS homolog, G-protein 99.3 1.1E-10 3.7E-15 102.0 14.9 137 80-236 9-156 (164)
184 1zu2_A Mitochondrial import re 99.3 2.1E-11 7.2E-16 107.9 10.2 103 57-211 13-126 (158)
185 3k9i_A BH0479 protein; putativ 99.2 1.1E-11 3.7E-16 104.4 7.9 92 92-211 2-96 (117)
186 1xi4_A Clathrin heavy chain; a 99.2 7E-10 2.4E-14 126.6 24.4 223 45-294 984-1251(1630)
187 1b89_A Protein (clathrin heavy 99.2 2.2E-11 7.4E-16 125.4 6.6 251 15-287 34-305 (449)
188 2l6j_A TPR repeat-containing p 99.1 1.1E-10 3.7E-15 96.1 7.6 95 175-290 3-104 (111)
189 2l6j_A TPR repeat-containing p 99.1 8.6E-11 2.9E-15 96.7 6.3 94 117-236 5-105 (111)
190 2kat_A Uncharacterized protein 99.0 4.5E-10 1.6E-14 93.8 8.6 79 65-145 4-82 (115)
191 2kat_A Uncharacterized protein 99.0 1.3E-09 4.4E-14 90.9 11.2 77 37-113 10-86 (115)
192 1na3_A Designed protein CTPR2; 99.0 2.6E-09 8.9E-14 84.4 12.1 85 173-278 6-91 (91)
193 4e6h_A MRNA 3'-END-processing 99.0 8.3E-09 2.8E-13 113.1 20.1 221 38-301 335-578 (679)
194 1na3_A Designed protein CTPR2; 99.0 4.6E-09 1.6E-13 82.9 12.4 84 45-130 8-91 (91)
195 4b4t_Q 26S proteasome regulato 99.0 2.5E-09 8.4E-14 110.3 12.6 171 47-237 56-244 (434)
196 3n71_A Histone lysine methyltr 99.0 7.4E-09 2.5E-13 109.3 16.1 134 85-236 314-462 (490)
197 3n71_A Histone lysine methyltr 98.9 6.6E-09 2.2E-13 109.7 14.7 134 52-206 315-465 (490)
198 3ma5_A Tetratricopeptide repea 98.9 2E-09 6.8E-14 87.9 8.4 72 42-113 3-74 (100)
199 4e6h_A MRNA 3'-END-processing 98.9 3.7E-08 1.3E-12 108.0 20.6 196 63-296 326-536 (679)
200 3ly7_A Transcriptional activat 98.9 4.9E-08 1.7E-12 97.9 17.7 144 39-211 187-345 (372)
201 3ma5_A Tetratricopeptide repea 98.8 1.6E-08 5.5E-13 82.4 10.5 65 172-236 3-68 (100)
202 2kc7_A BFR218_protein; tetratr 98.8 7E-09 2.4E-13 83.7 7.6 87 49-145 3-90 (99)
203 1klx_A Cysteine rich protein B 98.8 6.4E-08 2.2E-12 84.0 14.0 111 60-206 9-127 (138)
204 2kc7_A BFR218_protein; tetratr 98.8 9.2E-09 3.2E-13 83.0 7.6 84 122-239 6-91 (99)
205 1klx_A Cysteine rich protein B 98.8 1E-07 3.5E-12 82.7 14.0 106 94-235 9-123 (138)
206 3ly7_A Transcriptional activat 98.7 9.1E-07 3.1E-11 88.8 18.5 152 71-265 185-345 (372)
207 3u64_A Protein TP_0956; tetrat 98.5 2E-06 6.8E-11 83.0 16.2 199 63-297 49-273 (301)
208 3bee_A Putative YFRE protein; 98.5 1.1E-06 3.8E-11 70.7 12.0 70 172-241 2-75 (93)
209 3qwp_A SET and MYND domain-con 98.5 1.6E-06 5.4E-11 90.0 14.6 118 87-222 294-426 (429)
210 3bee_A Putative YFRE protein; 98.4 1.2E-06 4.1E-11 70.5 10.3 73 42-114 2-77 (93)
211 2v5f_A Prolyl 4-hydroxylase su 98.4 3.6E-06 1.2E-10 69.0 12.1 70 45-114 4-80 (104)
212 3qww_A SET and MYND domain-con 98.4 3.2E-06 1.1E-10 87.7 14.4 89 57-145 309-411 (433)
213 3qww_A SET and MYND domain-con 98.4 1.2E-06 4E-11 91.0 11.0 103 91-211 309-422 (433)
214 3qwp_A SET and MYND domain-con 98.4 6E-06 2.1E-10 85.6 16.1 93 53-145 294-400 (429)
215 3u64_A Protein TP_0956; tetrat 98.3 4.3E-05 1.5E-09 73.8 19.3 85 132-242 179-273 (301)
216 4g26_A Pentatricopeptide repea 98.3 5.7E-05 1.9E-09 79.9 21.3 158 49-235 29-201 (501)
217 2v5f_A Prolyl 4-hydroxylase su 98.2 1.2E-05 4.2E-10 65.7 11.5 80 79-184 4-88 (104)
218 1pc2_A Mitochondria fission pr 98.2 1.2E-05 4.2E-10 70.2 11.7 80 172-272 28-113 (152)
219 2uy1_A Cleavage stimulation fa 98.2 0.0004 1.4E-08 73.3 25.7 117 171-290 208-380 (493)
220 1pc2_A Mitochondria fission pr 98.1 2.2E-05 7.5E-10 68.6 12.1 72 43-114 29-105 (152)
221 2uy1_A Cleavage stimulation fa 98.1 0.00018 6.1E-09 76.0 21.4 52 62-114 195-246 (493)
222 4g26_A Pentatricopeptide repea 98.1 0.00031 1E-08 74.3 21.4 162 82-291 28-202 (501)
223 4h7y_A Dual specificity protei 97.8 0.0009 3.1E-08 57.6 15.1 124 74-224 7-142 (161)
224 1nzn_A CGI-135 protein, fissio 97.4 0.0024 8.3E-08 53.6 12.6 83 62-145 17-103 (126)
225 1nzn_A CGI-135 protein, fissio 97.4 0.0019 6.5E-08 54.2 11.5 78 172-270 31-114 (126)
226 3ffl_A Anaphase-promoting comp 97.2 0.0014 4.8E-08 57.6 8.6 95 48-142 22-148 (167)
227 1y8m_A FIS1; mitochondria, unk 97.0 0.01 3.5E-07 50.7 12.2 88 28-115 21-112 (144)
228 3ffl_A Anaphase-promoting comp 96.9 0.0068 2.3E-07 53.2 10.9 65 82-146 22-93 (167)
229 1y8m_A FIS1; mitochondria, unk 96.8 0.032 1.1E-06 47.6 13.8 78 172-270 35-117 (144)
230 4h7y_A Dual specificity protei 96.7 0.015 5.2E-07 50.0 11.0 111 109-240 8-125 (161)
231 3o48_A Mitochondria fission 1 96.7 0.019 6.3E-07 48.4 11.2 88 28-115 22-113 (134)
232 3o48_A Mitochondria fission 1 96.6 0.041 1.4E-06 46.4 12.8 65 175-239 39-108 (134)
233 3mkq_A Coatomer beta'-subunit; 96.3 0.38 1.3E-05 52.8 22.8 131 54-233 607-747 (814)
234 3kae_A CDC27, possible protein 96.2 0.49 1.7E-05 41.4 17.6 104 38-146 25-144 (242)
235 4gns_B Protein CSD3, chitin bi 96.2 0.032 1.1E-06 61.3 12.4 133 93-235 261-397 (754)
236 1zbp_A Hypothetical protein VP 95.7 0.21 7.2E-06 47.3 14.4 60 55-114 6-65 (273)
237 3txn_A 26S proteasome regulato 95.3 1 3.5E-05 45.5 18.8 171 46-238 19-210 (394)
238 4gns_B Protein CSD3, chitin bi 95.2 0.31 1.1E-05 53.4 15.4 117 59-202 261-397 (754)
239 3mkq_B Coatomer subunit alpha; 95.1 0.6 2.1E-05 41.4 14.3 55 44-106 6-60 (177)
240 3txn_A 26S proteasome regulato 94.9 1.2 4E-05 45.0 17.7 174 81-292 20-209 (394)
241 3mkq_A Coatomer beta'-subunit; 94.8 0.43 1.5E-05 52.5 15.8 139 48-234 631-774 (814)
242 3kae_A CDC27, possible protein 94.8 2 6.7E-05 37.7 18.3 213 56-296 12-240 (242)
243 2ff4_A Probable regulatory pro 94.6 0.41 1.4E-05 48.4 13.8 93 51-145 120-234 (388)
244 2ff4_A Probable regulatory pro 94.5 1.1 3.7E-05 45.2 16.7 102 127-236 126-232 (388)
245 3mkq_B Coatomer subunit alpha; 93.9 1.6 5.3E-05 38.7 14.2 109 79-235 7-115 (177)
246 3spa_A Mtrpol, DNA-directed RN 93.9 0.47 1.6E-05 53.4 13.1 96 117-234 128-226 (1134)
247 3spa_A Mtrpol, DNA-directed RN 93.8 0.62 2.1E-05 52.5 13.9 97 82-206 129-231 (1134)
248 1ya0_A SMG-7 transcript varian 93.4 0.44 1.5E-05 49.7 11.3 78 118-221 154-232 (497)
249 4b4t_S RPN3, 26S proteasome re 93.2 0.15 5.2E-06 53.0 7.4 135 54-209 144-303 (523)
250 4b4t_P 26S proteasome regulato 93.0 4.7 0.00016 41.3 18.5 103 115-237 136-246 (445)
251 4fhn_B Nucleoporin NUP120; pro 93.0 1.9 6.5E-05 49.9 17.0 147 51-227 817-989 (1139)
252 1ya0_A SMG-7 transcript varian 92.7 0.59 2E-05 48.7 11.1 80 178-257 154-234 (497)
253 4b4t_R RPN7, 26S proteasome re 92.1 0.31 1.1E-05 50.0 7.9 108 79-207 130-239 (429)
254 1zbp_A Hypothetical protein VP 90.9 2.1 7.1E-05 40.5 11.5 60 126-211 7-66 (273)
255 4b4t_P 26S proteasome regulato 90.9 4.3 0.00015 41.6 15.2 98 48-145 139-247 (445)
256 4b4t_R RPN7, 26S proteasome re 90.6 0.78 2.7E-05 46.9 9.2 99 47-145 132-237 (429)
257 4fhn_B Nucleoporin NUP120; pro 88.1 6.7 0.00023 45.3 15.6 101 41-141 837-963 (1139)
258 1qsa_A Protein (soluble lytic 88.1 30 0.001 36.9 21.1 124 52-204 220-347 (618)
259 2wpv_A GET4, UPF0363 protein Y 86.7 20 0.0007 34.6 15.7 28 173-200 131-158 (312)
260 1qsa_A Protein (soluble lytic 85.6 40 0.0014 35.9 18.8 52 56-111 82-133 (618)
261 4ady_A RPN2, 26S proteasome re 81.6 9.8 0.00034 42.6 12.1 158 48-235 415-586 (963)
262 4b4t_S RPN3, 26S proteasome re 80.8 5.4 0.00018 41.5 9.2 193 90-294 146-374 (523)
263 3esl_A Checkpoint serine/threo 78.5 37 0.0013 30.4 13.9 81 172-253 76-159 (202)
264 3lpz_A GET4 (YOR164C homolog); 71.4 78 0.0027 30.8 21.6 133 117-277 137-295 (336)
265 3lpz_A GET4 (YOR164C homolog); 69.6 86 0.0029 30.5 19.5 111 87-199 42-159 (336)
266 3lvg_A Clathrin heavy chain 1; 67.1 0.00026 9E-09 72.5 -26.4 225 45-292 53-290 (624)
267 4gq2_M Nucleoporin NUP120; bet 64.0 34 0.0012 38.6 11.3 111 182-296 816-929 (950)
268 4gq2_M Nucleoporin NUP120; bet 61.6 88 0.003 35.2 14.2 93 49-145 813-926 (950)
269 3esl_A Checkpoint serine/threo 60.1 62 0.0021 29.0 10.0 84 101-209 58-148 (202)
270 2wvi_A Mitotic checkpoint seri 57.0 39 0.0013 29.2 8.0 77 172-254 62-141 (164)
271 4a1g_A Mitotic checkpoint seri 53.9 33 0.0011 29.3 6.9 64 172-241 67-133 (152)
272 2v6y_A AAA family ATPase, P60 53.8 31 0.0011 26.0 6.1 34 216-263 18-51 (83)
273 2w2u_A Hypothetical P60 katani 53.2 38 0.0013 25.6 6.4 34 215-262 25-58 (83)
274 3ax2_A Mitochondrial import re 52.9 32 0.0011 25.4 5.7 29 85-113 22-50 (73)
275 1wy6_A Hypothetical protein ST 52.3 50 0.0017 27.9 7.4 55 89-145 100-154 (172)
276 2crb_A Nuclear receptor bindin 52.1 50 0.0017 25.5 6.8 42 212-268 18-59 (97)
277 4aez_C MAD3, mitotic spindle c 51.2 36 0.0012 31.0 7.1 64 172-241 116-182 (223)
278 4ady_A RPN2, 26S proteasome re 49.8 50 0.0017 37.0 9.2 94 47-143 456-551 (963)
279 3ax2_A Mitochondrial import re 44.8 52 0.0018 24.2 5.8 33 50-82 21-53 (73)
280 2crb_A Nuclear receptor bindin 42.9 38 0.0013 26.2 4.8 29 176-204 15-43 (97)
281 3t5v_B Nuclear mRNA export pro 41.5 41 0.0014 34.3 6.5 97 95-209 141-254 (455)
282 2wpv_A GET4, UPF0363 protein Y 40.7 2.5E+02 0.0085 26.8 19.8 79 116-204 134-216 (312)
283 2rpa_A Katanin P60 ATPase-cont 40.4 27 0.00094 26.1 3.7 26 49-74 15-40 (78)
284 2ijq_A Hypothetical protein; s 40.2 1.5E+02 0.005 25.5 8.8 60 86-145 38-104 (161)
285 2cfu_A SDSA1; SDS-hydrolase, l 39.0 45 0.0015 35.8 6.7 49 81-131 450-498 (658)
286 2wvi_A Mitotic checkpoint seri 37.5 86 0.0029 27.0 7.0 38 172-209 92-129 (164)
287 2cpt_A SKD1 protein, vacuolar 36.2 1.2E+02 0.004 24.5 7.2 33 218-264 27-59 (117)
288 4a5x_A MITD1, MIT domain-conta 36.2 1.1E+02 0.0036 23.2 6.6 39 212-264 19-57 (86)
289 1om2_A Protein (mitochondrial 36.1 44 0.0015 26.0 4.4 29 50-78 24-52 (95)
290 4a1g_A Mitotic checkpoint seri 35.9 1.1E+02 0.0038 26.0 7.4 40 172-211 97-136 (152)
291 3t5x_A PCI domain-containing p 35.8 67 0.0023 28.7 6.4 51 176-226 14-70 (203)
292 2ijq_A Hypothetical protein; s 35.5 1.6E+02 0.0054 25.3 8.3 61 49-109 35-104 (161)
293 4aez_C MAD3, mitotic spindle c 31.7 1.3E+02 0.0043 27.4 7.4 38 172-209 146-183 (223)
294 3t5x_A PCI domain-containing p 31.6 74 0.0025 28.4 5.9 33 81-113 15-47 (203)
295 3re2_A Predicted protein; meni 30.8 1.7E+02 0.006 28.6 8.4 45 99-145 276-325 (472)
296 4a5x_A MITD1, MIT domain-conta 29.5 77 0.0026 24.0 4.8 22 124-145 24-45 (86)
297 3re2_A Predicted protein; meni 29.4 1.8E+02 0.0063 28.5 8.3 60 176-235 255-322 (472)
298 1om2_A Protein (mitochondrial 28.5 76 0.0026 24.7 4.6 31 84-114 24-54 (95)
299 4b4t_O 26S proteasome regulato 28.4 4.3E+02 0.015 25.9 12.4 91 55-145 85-198 (393)
300 2igr_A Anticancer peptide CB1A 26.7 27 0.00093 20.5 1.3 15 503-517 5-19 (34)
301 3t5v_B Nuclear mRNA export pro 26.5 74 0.0025 32.4 5.5 62 52-113 182-254 (455)
302 3u84_A Menin; MLL, JUND, ledgf 25.7 2.2E+02 0.0076 28.5 8.2 61 175-235 276-344 (550)
303 2w2u_A Hypothetical P60 katani 25.2 81 0.0028 23.7 4.2 12 63-74 17-28 (83)
304 2rpa_A Katanin P60 ATPase-cont 25.0 65 0.0022 24.0 3.5 24 85-108 17-40 (78)
305 4gq4_A Menin; tumor suppressor 24.9 2.7E+02 0.0092 27.9 8.7 26 120-145 307-332 (489)
306 2v6y_A AAA family ATPase, P60 24.2 86 0.0029 23.5 4.2 12 63-74 9-20 (83)
307 1wfd_A Hypothetical protein 15 23.9 2.4E+02 0.0082 21.5 6.8 37 214-264 20-56 (93)
308 3u84_A Menin; MLL, JUND, ledgf 22.3 2.9E+02 0.0099 27.7 8.3 26 120-145 322-347 (550)
309 2v6x_A Vacuolar protein sortin 20.2 1.5E+02 0.005 22.1 4.8 26 179-204 16-41 (85)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.9e-26 Score=217.34 Aligned_cols=199 Identities=17% Similarity=0.113 Sum_probs=176.9
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
|..+.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++ .++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999999997 788899
Q ss_pred HHHHHHc-----------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850 123 LDLYKRC-----------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN 191 (524)
Q Consensus 123 g~~~~~~-----------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~ 191 (524)
|.++... |++++|+..|++++++ +|+++.+++++|.++...|+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------------------------NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------------------------CcccHHHHHHHHHHHHHcCC
Confidence 9999999 9999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
+++|+..|+++++++ +++. ++++|.++..+|++++|+..|+ ++++..|+++.++.++
T Consensus 134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 134 RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA---------------------KALEQAPKDLDLRVRY 191 (217)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCChHHHHHH
Confidence 999999999999999 8888 9999999999999999999999 7889999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhcc
Q 009850 271 GGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 271 g~~~~~~g~~~eAi~~~~~al 291 (524)
|.++...|++++|+..|+++-
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999988764
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.2e-25 Score=230.57 Aligned_cols=261 Identities=15% Similarity=0.125 Sum_probs=166.1
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
++...|....++..+|.++...|++++|+..++.++..+|.++.++..+|.++...|++++|+..|++++..+|++. .
T Consensus 25 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 102 (388)
T 1w3b_A 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI--D 102 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH--H
Confidence 33455666666666666666677777777777766666666666677777777777777777777777666666665 4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ 188 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~ 188 (524)
.+..+|.++...|++++|+..|+++++..+.... +. .+..+.+....... +..+|+++.+|.++|.++..
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA-IETQPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence 5566666666666666666666666665533221 11 12233332222211 22366666677777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHH
Q 009850 189 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYE 254 (524)
Q Consensus 189 ~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~ 254 (524)
.|++++|+..|+++++++|++.. ++++|.++...|++++|+..|++++...|... +++++|+..|+
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777777776666 66677777777777777777766665555542 56666667777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++...|+.+.++.++|.++...|++++|+..|+++++..|.+....
T Consensus 262 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 77777777666777777777777777777777777766666655544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.3e-25 Score=226.56 Aligned_cols=262 Identities=22% Similarity=0.168 Sum_probs=232.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQE 116 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~ 116 (524)
.++...|....+|+.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|+..
T Consensus 58 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-- 135 (388)
T 1w3b_A 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-- 135 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--
Confidence 455678899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------hh-cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------FN-GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
.++..+|.++...|++++|+..|++++...+.... +. .+....+....+.. +.++|++..++.++|.++.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHH
Confidence 67788999999999999999999999988654322 11 13333333332222 3458999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHH
Q 009850 188 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAY 253 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~ 253 (524)
..|++++|+..|++++.++|++.. +.++|.++...|++++|+..|+++....|... +++++|+..|
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999988 99999999999999999999999987777654 7889999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 254 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 254 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
++++...|.+..++.++|.++...|++++|+..|+++++..|.+....
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999999999999999999999999999999999877654
No 4
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-23 Score=208.32 Aligned_cols=232 Identities=12% Similarity=-0.000 Sum_probs=171.6
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
.|.....+..++.++...|++++|+..+++++..+|+++.++..+|.++...| ++++|+.+|++++..+|.++ .++.
T Consensus 52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 129 (330)
T 3hym_B 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG--PAWI 129 (330)
T ss_dssp CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT--HHHH
T ss_pred CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH--HHHH
Confidence 34444444445555555555555555555555555555555555555555555 55555555555555555443 3444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
.+|.++...|++++|+..|++++.. .|++..++..+|.++...|++++|+.+|+
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQL--------------------------MKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--------------------------TTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--------------------------ccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555555544 78888899999999999999999999999
Q ss_pred HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc---------cCCC-------------cCHHHHHHHHHHHH
Q 009850 201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV---------ADGP-------------RGVDSHLKAYERAQ 257 (524)
Q Consensus 201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~---------~~~~-------------~~~~~A~~~~~~al 257 (524)
+++..+|++.. ++.+|.++...|++++|+..|+++.... +... +++++|+..|++++
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999988 9999999999999999999999986654 2211 78899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...|+...++..+|.++...|++++|+..|+++++.+|.+....
T Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 99999999999999999999999999999999999999887754
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.4e-24 Score=220.72 Aligned_cols=230 Identities=17% Similarity=0.089 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|+.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.++|++. .++..+|.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence 445999999999999999999999999999999999999999999999999999999999999999987 788999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccH------------------hhhc-ccHHHHHHHhHHHHHhcCCC--cHHHHHHHHH
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGL------------------AFNG-KRTKTARSQGKKFQVSVEQE--ATRLLGNLGW 184 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~------------------~~~~-~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~ 184 (524)
|...|++++|+..|++++.+.+... .+.. +..+.+....+.. +..+|+ ++.+++++|.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA-AHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH-HHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH-HHhCcCccCHHHHHHHHH
Confidence 9999999999999999999864321 1111 2233333332221 334677 7888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC
Q 009850 185 ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 263 (524)
Q Consensus 185 ~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 263 (524)
++...|++++|+.+|+++++++|++.. |+++|.++..+|++++|+.+|+ +++...|+.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------------~al~~~p~~ 280 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT---------------------RALEIQPGF 280 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHhcCCCc
Confidence 888888888888888888888888877 8888888888888888888888 788889999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 264 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 264 ~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..+++++|.++..+|++++|+..|+++++..|....
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 999999999999999999999999999999887554
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=3e-24 Score=221.18 Aligned_cols=226 Identities=11% Similarity=0.001 Sum_probs=189.0
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR-AEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
...++|+.+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++. .+|+.+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHH
Confidence 3467899999999999999999999999999999999999999999999997 9999999999999999997 788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.++..+|++++|+.+|++++++ +|++..+|+++|.++...|++++|+.+|+++
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~l--------------------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQ--------------------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--------------------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHH-cCCHHHHH-----HHHHHhcccccCCC-------------c--CHHHHHHHHHHHHHhC
Q 009850 203 LSIAPDNNK-MCNLGICLMK-QGRIGEAK-----ETLRRVKPAVADGP-------------R--GVDSHLKAYERAQQML 260 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~-~G~~~eA~-----~~~~~a~~~~~~~~-------------~--~~~~A~~~~~~al~~~ 260 (524)
++++|++.. |+++|.++.. .|.+++|+ .+|++++...|+.. + .+++++..+.++ ...
T Consensus 227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 999999999 9999999999 56557774 66776655554442 1 245555555555 556
Q ss_pred CCCHHHHHHHHHHHHHcC---------CHHHHHHHHhhc-ccCCCCCC
Q 009850 261 KDLESEMMNKGGDRVEQS---------RLFDAFLGSSSI-WQPQPCKD 298 (524)
Q Consensus 261 p~~~~a~~~lg~~~~~~g---------~~~eAi~~~~~a-l~~~P~~~ 298 (524)
|+...++..+|.+|..+| .+++|+..|+++ .+.+|...
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH
Confidence 666666666666666653 135666666666 56665443
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=3.1e-23 Score=208.11 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=120.8
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQAQE 116 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~~~~ 116 (524)
...|..+.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+| ++.
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-- 108 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-- 108 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH--
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH--
Confidence 334455555555555555555555555555555555555555555555555555555555555555555555 333
Q ss_pred HHHHHH------------HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850 117 SLDNIL------------LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW 184 (524)
Q Consensus 117 ~l~~~l------------g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~ 184 (524)
..+..+ |.++...|++++|+..|++++.. +|+++.++..+|.
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------------------------CVWDAELRELRAE 162 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCchHHHHHHHH
Confidence 222222 44555555555555555555554 4555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC--------------------
Q 009850 185 ALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------------- 243 (524)
Q Consensus 185 ~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------------- 243 (524)
++...|++++|+..|++++...|+++. ++.+|.++...|++++|+..|+++....+...
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555 55555555555555555555555544333321
Q ss_pred -----cCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 244 -----RGVDSHLKAYERAQQMLKDLES----EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 244 -----~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
+++++|+..+++++...|+... ++..+|.++...|++++|+..|+++++.+|.+..
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 3444455555555555555442 2334455555555555555555555555554443
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.2e-22 Score=203.76 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=221.6
Q ss_pred hhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CcHHHHHHH------------HHHHHHcC
Q 009850 31 TRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD---RVDSALKDM------------AIVMKQQN 94 (524)
Q Consensus 31 ~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p---~~~~a~~~L------------a~~~~~~g 94 (524)
.+...+. ++...|....+|+.+|.++...|++++|+..|++++..+| ++..++..+ |.++...|
T Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444443 4456788899999999999999999999999999999999 999999888 79999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC
Q 009850 95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE 174 (524)
Q Consensus 95 ~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~ 174 (524)
++++|+..+++++...|.++ .++..+|.++...|++++|+..|++++.. +|.
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~ 186 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISDLKAASKL--------------------------KSD 186 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CSC
T ss_pred CHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------CCC
Confidence 99999999999999999987 77889999999999999999999999988 899
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH------------HHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC------------NLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~------------~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
++.+++.+|.++...|++++|+..|+++++..|++.. +. .+|.++...|++++|+..|+++....+.
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999877 43 4488999999999999999999877776
Q ss_pred CC-----------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 242 GP-----------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 242 ~~-----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.. +++++|+..|++++...|+.+.+++.+|.++...|++++|+..|+++++.+|.+....
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 52 7789999999999999999999999999999999999999999999999999876643
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=208.71 Aligned_cols=234 Identities=13% Similarity=0.019 Sum_probs=217.4
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
..++.+.+.++.+|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|+++ .++
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~ 93 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VSW 93 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHH
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHH
Confidence 445666777999999999999999999999999999999999999999999999999999999999999999987 778
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 120 NILLDLYKRCG-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 120 ~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
..+|.++...| ++++|+.+|++++.. +|.++.++..+|.++...|++++|+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTL--------------------------EKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTT--------------------------CTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 89999999999 999999999999988 899999999999999999999999999
Q ss_pred HHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhC----
Q 009850 199 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQML---- 260 (524)
Q Consensus 199 ~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~---- 260 (524)
|++++...|++.. +..+|.++...|++++|+..|++++...+... +++++|+..+++++...
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 9999999999888 88999999999999999999999988887764 78899999999999987
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 261 -----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 261 -----p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
|....++.++|.++...|++++|+..|+++++.+|.+....
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHH
Confidence 77788999999999999999999999999999999887755
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.1e-22 Score=211.94 Aligned_cols=260 Identities=13% Similarity=0.099 Sum_probs=178.8
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA---QE 116 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~---~~ 116 (524)
...|....+|+.+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|++++..+|++. ..
T Consensus 54 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 345566666667777777777777777777777777777666777777777777777777777777776666543 11
Q ss_pred H----------HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh---------cccHHHH-HHHhHHHHHhcCCCcH
Q 009850 117 S----------LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN---------GKRTKTA-RSQGKKFQVSVEQEAT 176 (524)
Q Consensus 117 ~----------l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~---------~~~~~~a-~~~~~~~~~~~~p~~~ 176 (524)
. ....+|.++...|++++|+..|++++...+...... .+..+.+ ..+.+. +..+|+++
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~ 211 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA--SKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH--HHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhCCCCH
Confidence 1 122335556666777777777776666543322111 1111111 111111 23367788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHH------------HHHHHHcCCHHHHHHHHHHhcccccCCC
Q 009850 177 RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNL------------GICLMKQGRIGEAKETLRRVKPAVADGP 243 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~L------------g~~~~~~G~~~eA~~~~~~a~~~~~~~~ 243 (524)
.+++.+|.++...|++++|+..|++++.++|++.. +..+ |.++...|++++|+..|++++...|...
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 88888888888888888888888888888888776 5444 8888888888888888888876666531
Q ss_pred -----------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 244 -----------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 244 -----------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++++|+..+++++...|+...++..+|.++...|++++|+..|+++++.+|.+....
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 6778888888888888888888888888888888888888888888888888876543
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=1.5e-22 Score=205.04 Aligned_cols=228 Identities=16% Similarity=0.097 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+++ .++..+|.+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999987 788899999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhh------------------------cccHHHHHHHhHHHHHhcCCC--cHHHH
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFN------------------------GKRTKTARSQGKKFQVSVEQE--ATRLL 179 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~------------------------~~~~~~a~~~~~~~~~~~~p~--~~~a~ 179 (524)
|...|++++|+..|++++...+...... .+..+.+....... +..+|. ++.++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA-VRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH-HHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH-HHhCcCcccHHHH
Confidence 9999999999999999998764332211 12222222222211 344777 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHH
Q 009850 180 GNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ 258 (524)
Q Consensus 180 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~ 258 (524)
..+|.++...|++++|+.+|++++.++|+++. ++++|.++...|++++|+..|+ +++.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------------~al~ 279 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR---------------------RALE 279 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHH
Confidence 99999999999999999999999999999888 8899999999999999999988 5555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
..|+...++.++|.++...|++++|+..|++++...|.+
T Consensus 280 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 566666666666666666666666666666666665554
No 12
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.3e-23 Score=195.99 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=199.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN 120 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~ 120 (524)
.+.|+.+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|+.. ...++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4679999999999999999999999999999 9999999999999999999999999999999988541 137888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
.+|.+|...|++++|+..|++++.+.+.+..+.. +..+.+...... ....+|.++.++..+|.++...|++++|+.+|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA-EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999998766544333 223333222222 23457888999999999999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 278 (524)
++++..+|+++. ++++|.++...|++++|+.+|+ +++...|+...++..+|.++..+|
T Consensus 163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN---------------------KAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH---------------------HHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999999999999 778889999999999999999999
Q ss_pred CHHHHHHHHhhcccCC
Q 009850 279 RLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 279 ~~~eAi~~~~~al~~~ 294 (524)
++++|+..|+++++.+
T Consensus 222 ~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 EYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999998
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=7.4e-23 Score=187.35 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=157.5
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
+..+..|+++|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+++++...|++. .++..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHH
Confidence 556788999999999999999999999999999999999999999999999999999999999999999997 677888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.++...++++.|+..+.+++.+ +|.+..++..+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~--------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIAL--------------------------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------------------------CccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 99999999999999999999998 8999999999999999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
++++|+++. |+++|.+|..+|++++|+.+|+++
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999 999999999999999999999943
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=4.5e-22 Score=197.38 Aligned_cols=249 Identities=18% Similarity=0.076 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
..++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|++. .++..+|.+|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999887 6778899999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHh-----------------------h-hcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLA-----------------------F-NGKRTKTARSQGKKFQVSVEQEATRLLGNL 182 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~-----------------------~-~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L 182 (524)
...|++++|+..|++++...+.... + ..+..+.+....... ...+|.++.++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA-LEMNPNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH-HHHSTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH-HhhCCCCHHHHHHH
Confidence 9999999999999999987643221 1 112233333322221 34479999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHH
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDS 248 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~ 248 (524)
|.++...|++++|+.+|++++..+|++.. +..+|.++...|++++|+..|+++....+... +++++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999998 99999999999999999999998877666653 67788
Q ss_pred HHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCC
Q 009850 249 HLKAYERAQQMLKD------------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 298 (524)
Q Consensus 249 A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~ 298 (524)
|+..|++++...|+ ...++..+|.++...|++++|...+++++...|...
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 88888888888888 778888888888888888888888888876655443
No 15
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=2.8e-23 Score=201.51 Aligned_cols=229 Identities=11% Similarity=0.044 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--QESLDNILL 123 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~l~~~lg 123 (524)
++.++..|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. .|.++ ....+..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 355889999999999999999999999999999999999999999999999999999999999 44332 135678999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
.+|...|++++|+..|+++++. +|.++.++..+|.++...|++++|+.+|++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--------------------------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------------------------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHcccHHHHHHHHHHHHhc--------------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998 88999999999999999999999999999999
Q ss_pred hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cC---HHHHHHHHHHHHHhC---CC-
Q 009850 204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RG---VDSHLKAYERAQQML---KD- 262 (524)
Q Consensus 204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~---~~~A~~~~~~al~~~---p~- 262 (524)
+++|.+.. |+++|......+++++|+..|++++...|... +. .+.|+..|+++++.. |+
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 99999988 99999445555699999999999988777753 23 556788888888886 54
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 263 ----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 263 ----~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...++..+|.+|...|++++|+..|++++..+|.+....
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 346899999999999999999999999999999987644
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.1e-22 Score=193.28 Aligned_cols=208 Identities=17% Similarity=0.095 Sum_probs=180.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
.+..|+.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++..+|.+. .++..+|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHH
Confidence 3445899999999999999999999999999999999999999999999999999999999999999887 77889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
++...|++++|+..|+++++. +|.+..++..+|.++...|++++|+..|++++.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--------------------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998 899999999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 283 (524)
..|++.. +..+|.++...|++++|+..|+ +++...|+...++..+|.++...|++++|
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 154 LNENDTEARFQFGMCLANEGMLDEALSQFA---------------------AVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 9999998 9999999999999999999999 77888899999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCcc
Q 009850 284 FLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 284 i~~~~~al~~~P~~~~~l 301 (524)
+..|+++++.+|.+....
T Consensus 213 ~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHccCcchHHHH
Confidence 999999999999887644
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=9.9e-23 Score=206.93 Aligned_cols=252 Identities=16% Similarity=0.054 Sum_probs=192.2
Q ss_pred hhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 31 TRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 31 ~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
.+...+. ++...|....+|+.+|.++...|++++|+..|++++..+|++..++..+|.+|..+|++++|+..|++++.+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 3444443 445678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--cHh--------hh-cccHHHHHHHhHHHHHh
Q 009850 110 CSDQAQ--------ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQ--GLA--------FN-GKRTKTARSQGKKFQVS 170 (524)
Q Consensus 110 ~p~~~~--------~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~--~~~--------~~-~~~~~~a~~~~~~~~~~ 170 (524)
.|++.. ..+...+|.++...|++++|+.+|++++.+.+. ... +. .+..+.+....+.. +.
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~ 241 (365)
T 4eqf_A 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA-LT 241 (365)
T ss_dssp CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH
T ss_pred CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH
Confidence 987541 122335688999999999999999999998765 221 11 13344443333222 34
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHH
Q 009850 171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSH 249 (524)
Q Consensus 171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A 249 (524)
.+|+++.+|+++|.++...|++++|+.+|+++++++|++.. ++++|.++..+|++++|+.+|++++...+...+..
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 318 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ--- 318 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc---
Confidence 48999999999999999999999999999999999999998 99999999999999999999996654443322110
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 250 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
..........+|..+|.++..+|+.+.+..+..+.+.
T Consensus 319 ------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 319 ------QVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp --------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred ------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 0000111356899999999999999999988776543
No 18
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=2.2e-23 Score=230.92 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=80.9
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
|..+++|++||.++..+|++++|+.+|+++++++|++..++++||.+|..+|++++|+.+|+++++++|+++ .+++.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555555555555555444 344444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.+|..+|++++|+..|++++++ +|+++.+|+++|.+|..+|++++|+.+|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--------------------------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--------------------------NPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555554444 4444445555555555555555555555555
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
++++|++.. ++++|.++..+|++++|++.|+
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 555554444 4445555555555444444444
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=4.7e-22 Score=215.11 Aligned_cols=272 Identities=10% Similarity=-0.018 Sum_probs=233.6
Q ss_pred cchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 27 GVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 27 ~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
+....+...+..+...+.....|+.+|..+...|++++|+..|++++..+|++..++..++.++...|++++|+..++++
T Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44555566665554556788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh--------h-hcccHHHHHHHhHHHHHhcCCCcHH
Q 009850 107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA--------F-NGKRTKTARSQGKKFQVSVEQEATR 177 (524)
Q Consensus 107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~--------~-~~~~~~~a~~~~~~~~~~~~p~~~~ 177 (524)
+...|++. ..+..+|.+|...|++++|+.+|++++++.+.... + ..+..+.+....+.. ....|++..
T Consensus 366 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 442 (597)
T 2xpi_A 366 VDRHPEKA--VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA-ARLFQGTHL 442 (597)
T ss_dssp HHHCTTSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTTTCSH
T ss_pred HhhCcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCccchH
Confidence 99999887 67788999999999999999999999987644332 1 113444444333322 345788999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc------ccCCC-------
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA------VADGP------- 243 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~------~~~~~------- 243 (524)
+++.+|.+|...|++++|+.+|+++++..|+++. |..+|.++.+.|++++|+..|+++... .+...
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999999999999999998655 33321
Q ss_pred -------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 244 -------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 244 -------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++++|+..|+++++..|++..++..+|.+|...|++++|+..|+++++.+|.+....
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 7889999999999999999999999999999999999999999999999999987644
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.3e-22 Score=192.05 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=166.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
|.++.+++.+|.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP--EALYWLARTQLKLGLVNPALENGKTLVAR----------- 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence 67788999999999999999999999999999999998 78899999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCC
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ-----------NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR 224 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~-----------g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~ 224 (524)
+|+++.+++++|.++... |++++|+..|+++++++|++.. |+++|.++..+|+
T Consensus 69 ---------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 69 ---------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ---------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 999999999999999999 9999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 225 IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 225 ~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++|+..|+ +++++. +++.+++++|.++..+|++++|+..|+++++.+|.+....
T Consensus 134 ~~~A~~~~~---------------------~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 188 (217)
T 2pl2_A 134 RDKAEASLK---------------------QALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHHHHH---------------------HHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHH---------------------HHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999 778888 8999999999999999999999999999999999988765
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=1.1e-21 Score=188.09 Aligned_cols=206 Identities=15% Similarity=0.057 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++..+|.+. .++..+|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999999999999999887 678899999
Q ss_pred HHHcCChHHHHHHHHHHHH--HhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 126 YKRCGRLDDQIALLKHKLY--LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRAL 203 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~--l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 203 (524)
|...|++++|+.+|++++. . .|.+..++..+|.++...|++++|+.+|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL--------------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT--------------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCcc--------------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999987 4 78889999999999999999999999999999
Q ss_pred hhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 009850 204 SIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 282 (524)
Q Consensus 204 ~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~e 282 (524)
...|.+.. +..+|.++...|++++|+..|+ +++...|....++..++.++...|++++
T Consensus 169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 169 RLNRNQPSVALEMADLLYKEREYVPARQYYD---------------------LFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 99999988 9999999999999999999999 6777888999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCc
Q 009850 283 AFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 283 Ai~~~~~al~~~P~~~~~ 300 (524)
|+..++++++..|.+...
T Consensus 228 A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 228 AASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHCCCCHHH
Confidence 999999999999987653
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=6e-22 Score=181.27 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=165.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 78 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 78 ~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
+++..|+.+|.+|..+|++++|+..|+++++++|+++ .++..+|.+|...|++++|+..+.+++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~a~~~~~~~~~~------------ 68 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV--ETLLKLGKTYMDIGLPNDAIESLKKFVVL------------ 68 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence 5678999999999999999999999999999999997 78899999999999999999999999988
Q ss_pred HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
.|++..++..+|.++...++++.|+..+.+++.++|++.. +..+|.++..+|++++|+..|+
T Consensus 69 --------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--- 131 (184)
T 3vtx_A 69 --------------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE--- 131 (184)
T ss_dssp --------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---
T ss_pred --------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH---
Confidence 8999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 237 PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 237 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
++++..|+++.+++++|.+|..+|++++|+..|+++++.+|.+..
T Consensus 132 ------------------~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 132 ------------------KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp ------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred ------------------HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 788999999999999999999999999999999999999997644
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.8e-22 Score=210.63 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|+++ .++..+|.+|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHH
Confidence 5888999999999999999999999999999 99999999999999999999999999999999987 67889999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
..|++++|+..|++++.. +|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 322 ~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSL--------------------------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--------------------------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999998 899999999999999999999999999999999999
Q ss_pred CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------------------------cCHHHHHHHHHHHH
Q 009850 208 DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-----------------------------RGVDSHLKAYERAQ 257 (524)
Q Consensus 208 ~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------------------------~~~~~A~~~~~~al 257 (524)
+++. +..+|.++...|++++|+..|+++....+... +++++|+..|++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 9998 99999999999999999999999855443321 67788999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
...|++..++..+|.++...|++++|+..|+++++..|......
T Consensus 456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999877644
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=4.2e-22 Score=215.54 Aligned_cols=249 Identities=11% Similarity=0.046 Sum_probs=193.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
|..++..+...|++++|+..|++++.. |.+..++..+|.+|...|++++|+..|++++..+|++. .++..++.++..
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 351 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL--DVYPLHLASLHE 351 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC--TTHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH--HHHHHHHHHHHH
Confidence 445577778899999999999999988 78899999999999999999999999999999999876 677888999999
Q ss_pred cCChHHHHHHHHHHHHHhhccHh--------h-hcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 129 CGRLDDQIALLKHKLYLIQQGLA--------F-NGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l~~~~~~--------~-~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
.|++++|+..+++++...+.... + ..+..+.+....... ...+|.+..+|+.+|.+|...|++++|+..|
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS-STMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999877533221 1 113333333332221 2346777888888888888888888888888
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHh------
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQM------ 259 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~------ 259 (524)
++++...|++.. |..+|.+|...|++++|+..|+++....+... +++++|++.|++++..
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 431 TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 888888887766 77888888888888888888888766655543 6777888888888777
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 260 LKDL-ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 260 ~p~~-~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.|+. ..++..+|.++...|++++|+..|+++++.+|.+....
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 5553 67788888888888888888888888888777766544
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=2.5e-21 Score=181.27 Aligned_cols=208 Identities=14% Similarity=0.070 Sum_probs=195.0
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
|..+..|+.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++..+|.+. .++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999999999999987 677889
Q ss_pred HHHHHHc-CChHHHHHHHHHHHH--HhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 123 LDLYKRC-GRLDDQIALLKHKLY--LIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 123 g~~~~~~-g~~~eA~~~~~~al~--l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
|.++... |++++|+..|++++. . .|.+..++..+|.++...|++++|+.+|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPT--------------------------YPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTT--------------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcC--------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999 999999999999987 3 6788899999999999999999999999
Q ss_pred HHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 009850 200 RRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK-DLESEMMNKGGDRVEQ 277 (524)
Q Consensus 200 ~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 277 (524)
+++++..|++.. +..+|.++...|++++|+..++ +++...| .....+..++.++...
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK---------------------KYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999988 9999999999999999999999 6777888 8899999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCCC
Q 009850 278 SRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 278 g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|+.++|...++.+.+..|.+..
T Consensus 196 ~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999988888765
No 26
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=4.6e-22 Score=211.02 Aligned_cols=201 Identities=15% Similarity=0.068 Sum_probs=191.4
Q ss_pred hcCCCChHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 40 HKVPVGDTPYVRAKNVQLVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 40 ~~~p~~~~~~~~lg~~~~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
...+.....|+.+|.++...|++ ++|+.+|+++++.+|++..+|+.+|.+|..+|++++|+.+|+++++++|+ . .+
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~ 172 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VS 172 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HH
Confidence 34567888999999999999999 99999999999999999999999999999999999999999999999999 3 78
Q ss_pred HHHHHHHHHHc---------CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850 119 DNILLDLYKRC---------GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 119 ~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
+..+|.+|... |++++|+..|++++++ +|+++.+|+++|.+|...
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------------------------DVLDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHH
Confidence 89999999999 9999999999999999 999999999999999999
Q ss_pred --------CCHHHHHHHHHHHHhhCC---CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850 190 --------NNYIEAEDAYRRALSIAP---DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ 257 (524)
Q Consensus 190 --------g~~~eAi~~~~~Al~l~P---~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al 257 (524)
|++++|+.+|+++++++| +++. |+++|.+|..+|++++|+..|+ +++
T Consensus 227 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~---------------------~al 285 (474)
T 4abn_A 227 YFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS---------------------QAA 285 (474)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHH
T ss_pred HHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHH
Confidence 999999999999999999 8888 9999999999999999999999 888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 290 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~a 290 (524)
+..|++..++.+++.++..+|++++|+..+.+.
T Consensus 286 ~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999987655
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.4e-22 Score=208.75 Aligned_cols=230 Identities=13% Similarity=0.019 Sum_probs=214.7
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
|....+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|.+. .++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHH
Confidence 455678999999999999999999999999999999 99999999999999999999999999999999887 678899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.+|...|++++|+..|++++.. +|.+..++..+|.++...|++++|+..|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKEL--------------------------DPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHT--------------------------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--------------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999988 8889999999999999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------------------CcCHHHHHHHHHHHHHh
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------------PRGVDSHLKAYERAQQM 259 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------------------~~~~~~A~~~~~~al~~ 259 (524)
+...|+++. ++++|.++...|++++|+..|+++....+.. .+++++|+..|++++..
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 999999988 9999999999999999999999986555443 56788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 260 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 260 ~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.|+...++..+|.++...|++++|+..|+++++.+|.+....
T Consensus 445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 999999999999999999999999999999999999877654
No 28
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=4.6e-21 Score=181.77 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=175.0
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
+.++..++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++..+|++++|+.+|++++..+|++. .++..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA--NAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--HHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--HHHHH
Confidence 34568899999999999999999999999999998 8899999999999999999999999999999999987 78899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-------RLLGNLGWALMQQNNYIE 194 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-------~a~~~Lg~~~~~~g~~~e 194 (524)
+|.+|...|++++|+..|++++++ +|+++ .++.++|.++...|++++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA--------------------------VPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 999999999999999999999999 78887 679999999999999999
Q ss_pred HHHHHHHHHhhCCC--cHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-----------CcCHHHHHHHHHHHHHhC
Q 009850 195 AEDAYRRALSIAPD--NNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG-----------PRGVDSHLKAYERAQQML 260 (524)
Q Consensus 195 Ai~~~~~Al~l~P~--~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~-----------~~~~~~A~~~~~~al~~~ 260 (524)
|+..|+++++++|+ +.. |+++|.++..+|+. .++++....... .+.+++|+..|++++++.
T Consensus 136 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999 888 99999999888765 122221111111 134567888999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 009850 261 KDLESEMMNKGGDRV 275 (524)
Q Consensus 261 p~~~~a~~~lg~~~~ 275 (524)
|++..+...++.+..
T Consensus 211 p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 211 PNRTEIKQMQDQVKA 225 (228)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888887654
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=5.5e-21 Score=203.62 Aligned_cols=130 Identities=10% Similarity=0.064 Sum_probs=120.6
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------
Q 009850 171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------ 243 (524)
Q Consensus 171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------ 243 (524)
.+|+ ..++..+|.++...|++++|+.+|++++..+|+++. +..+|.++...|++++|+..|+++....+...
T Consensus 272 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 350 (537)
T 3fp2_A 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350 (537)
T ss_dssp HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4788 899999999999999999999999999999999998 99999999999999999999999988777764
Q ss_pred -------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 244 -------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 244 -------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++++|+..|++++...|+...++..+|.++...|++++|+..|+++++..|.+....
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 7889999999999999999999999999999999999999999999999988877644
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=2.1e-21 Score=199.91 Aligned_cols=212 Identities=9% Similarity=0.025 Sum_probs=193.6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKD-PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ 115 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~ 115 (524)
+++...|....+|+.+|.++...|+ +++|+.+|++++.++|++..+|+.+|.++..+|++++|+..|++++.++|++.
T Consensus 122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~- 200 (382)
T 2h6f_A 122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY- 200 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-
T ss_pred HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH-
Confidence 4567789999999999999999997 99999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ-QNNYIE 194 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~-~g~~~e 194 (524)
.+++.+|.++...|++++|+.+|++++++ +|++..+|+++|.++.. .|.+++
T Consensus 201 -~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------------------------~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 201 -HAWQHRQWVIQEFKLWDNELQYVDQLLKE--------------------------DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp -HHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhcCcchH
Confidence 78899999999999999999999999999 99999999999999999 565588
Q ss_pred H-----HHHHHHHHhhCCCcHH-HHHHHHHHHHcC--CHHHHHHHHHHhcccccCCC-------------c---------
Q 009850 195 A-----EDAYRRALSIAPDNNK-MCNLGICLMKQG--RIGEAKETLRRVKPAVADGP-------------R--------- 244 (524)
Q Consensus 195 A-----i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G--~~~eA~~~~~~a~~~~~~~~-------------~--------- 244 (524)
| +.+|++++.++|++.. |+++|.++...| ++++|+..++++ ...++.. +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 8 5999999999999999 999999999988 699999999987 5555543 1
Q ss_pred CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc
Q 009850 245 GVDSHLKAYERA-QQMLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 245 ~~~~A~~~~~~a-l~~~p~~~~a~~~lg~~~~~~ 277 (524)
..++|++.|+++ ++++|.....|..++..+..+
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 147899999999 999999999999999877654
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.1e-21 Score=203.04 Aligned_cols=252 Identities=10% Similarity=0.045 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
.+.|+.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++. .++..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS--KVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH--HHHHHHHHH
Confidence 45788999999999999999999999999998 588999999999999999999999999999999987 678889999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHh------------------------------------------------------
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLA------------------------------------------------------ 151 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~------------------------------------------------------ 151 (524)
|...|++++|+..|++++...+....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998876531110
Q ss_pred ----------------------------------hh---cccHHHHHHH-hHHHH-----HhcC-------CCcHHHHHH
Q 009850 152 ----------------------------------FN---GKRTKTARSQ-GKKFQ-----VSVE-------QEATRLLGN 181 (524)
Q Consensus 152 ----------------------------------~~---~~~~~~a~~~-~~~~~-----~~~~-------p~~~~a~~~ 181 (524)
+. .+..+.+... .+... ...+ |.++.+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00 1122222222 22221 1112 444667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHH
Q 009850 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVD 247 (524)
Q Consensus 182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~ 247 (524)
+|.++...|++++|+..|++++..+|+ .. +..+|.++...|++++|+..|+++....+... ++++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 777787888888888888888877777 55 77777777777887777777777766655543 5666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 248 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
.|+..|++++...|....++..+|.++...|++++|+..|+++++..|.+....
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence 777777777777777777777777777777777777777777777777666544
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=1.1e-21 Score=217.35 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=149.0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850 75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154 (524)
Q Consensus 75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~ 154 (524)
..|++++++++||.+|..+|++++|+.+|+++++++|++. .+++.+|.+|..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRI--------- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 4689999999999999999999999999999999999997 78899999999999999999999999999
Q ss_pred ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
+|+++.+|+++|.+|..+|++++|+.+|+++++++|++.. |+++|.+|..+|++++|+..|+
T Consensus 73 -----------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 73 -----------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhcccccCCC-------------cCHHHHHHHHHHHHHhCCC
Q 009850 234 RVKPAVADGP-------------RGVDSHLKAYERAQQMLKD 262 (524)
Q Consensus 234 ~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~ 262 (524)
+++...|+.. +++++|.+.+++++++.|+
T Consensus 136 ~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 9988888765 6667788888888887654
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=8.8e-21 Score=183.68 Aligned_cols=227 Identities=11% Similarity=-0.120 Sum_probs=169.2
Q ss_pred cchhhhhhhHHHHhcC-----CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 27 GVSRTRSDSFHAIHKV-----PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIE 101 (524)
Q Consensus 27 ~~l~~~~~~~~~~~~~-----p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~ 101 (524)
+....+...+..+... |....+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4555555555544433 33456777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850 102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN 181 (524)
Q Consensus 102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~ 181 (524)
+|++++..+|.+. .++..+|.+|...|++++|+..|++++++ +|++......
T Consensus 99 ~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~ 150 (275)
T 1xnf_A 99 AFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQD--------------------------DPNDPFRSLW 150 (275)
T ss_dssp HHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHH
T ss_pred HHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------CCCChHHHHH
Confidence 8888888888775 56677788888888888888888888777 6777655555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC
Q 009850 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK 261 (524)
Q Consensus 182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p 261 (524)
++.+ ...|++++|+..|++++...|.+.....++.++...++.++|+..++++....+ ...|
T Consensus 151 ~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~ 212 (275)
T 1xnf_A 151 LYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT-----------------SLAE 212 (275)
T ss_dssp HHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH-----------------HHHH
T ss_pred HHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc-----------------cccc
Confidence 5544 556888888888888888777765544567777777777777777776543221 1222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 262 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 262 ~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
....+++.+|.++...|++++|+..|++++..+|.+..
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 34678999999999999999999999999999987654
No 34
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.9e-21 Score=195.54 Aligned_cols=234 Identities=12% Similarity=-0.004 Sum_probs=197.5
Q ss_pred HHHHcCChHHHHH-HHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc
Q 009850 55 VQLVDKDPEKAIP-LFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC 129 (524)
Q Consensus 55 ~~~~~g~~~~Ai~-~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~ 129 (524)
++...|++++|+. .|.+++...|+++ ..++.+|.++...|++++|+..|+++++.+|++. .++..+|.+|...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM--EAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHC
Confidence 5566799999999 9999999988764 5689999999999999999999999999999987 7788999999999
Q ss_pred CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 130 GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 130 g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
|++++|+..|++++++ +|+++.++..+|.++...|++++|+..|++++.+.|++
T Consensus 112 g~~~~A~~~~~~al~~--------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 112 EQELLAISALRRCLEL--------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp TCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred cCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 9999999999999998 89999999999999999999999999999999999998
Q ss_pred HH-HH----------------HHHHHHHHcCCHHHHHHHHHHhcccccC--CC-------------cCHHHHHHHHHHHH
Q 009850 210 NK-MC----------------NLGICLMKQGRIGEAKETLRRVKPAVAD--GP-------------RGVDSHLKAYERAQ 257 (524)
Q Consensus 210 ~~-~~----------------~Lg~~~~~~G~~~eA~~~~~~a~~~~~~--~~-------------~~~~~A~~~~~~al 257 (524)
.. +. .++.++ ..|++++|+..|+++....|. .. +++++|+..|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77 32 577777 999999999999999888777 32 78899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccccccccc
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENID 319 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~lgd~~~~ 319 (524)
...|+.+.++.++|.++...|++++|+..|++++..+|.+...... +..+....|+....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--l~~~~~~~g~~~~A 304 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN--LGISCINLGAHREA 304 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHTCHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999988776544 33333444554443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=197.09 Aligned_cols=269 Identities=13% Similarity=0.011 Sum_probs=199.1
Q ss_pred hhhhhhHH-HHhcCCCChHHHHHHHHHHH---HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHH
Q 009850 30 RTRSDSFH-AIHKVPVGDTPYVRAKNVQL---VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ----NRAEEAIE 101 (524)
Q Consensus 30 ~~~~~~~~-~~~~~p~~~~~~~~lg~~~~---~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~----g~~~eAi~ 101 (524)
..+...|. ++...|..++++..+|.+++ ..+++++|+..|+++++++|++..++..+|..+... |++++|+.
T Consensus 155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~ 234 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEK 234 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555554 66778999999999988754 569999999999999999999999999998777654 67889999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc-------------------------
Q 009850 102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR------------------------- 156 (524)
Q Consensus 102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~------------------------- 156 (524)
++++++..+|+.. .++..+|.+|...|++++|+..|+++++..+.........
T Consensus 235 ~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~ 312 (472)
T 4g1t_A 235 LVEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312 (472)
T ss_dssp HHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred HHHHHHHhCccHH--HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999997 6778999999999999999999999999875443221100
Q ss_pred ---HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHH-HHHcCCHHHH
Q 009850 157 ---TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGIC-LMKQGRIGEA 228 (524)
Q Consensus 157 ---~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~-~~~~G~~~eA 228 (524)
.+.+..... .....+|.+..++..+|.++...|++++|+.+|+++++++|++.. ++++|.+ +...|++++|
T Consensus 313 ~~~~~~A~~~~~-~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 313 LELIGHAVAHLK-KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HHHHHHHHHHHH-HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HhhHHHHHHHHH-HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 011111111 113458999999999999999999999999999999999988754 5566654 4578999999
Q ss_pred HHHHHHhcccccCCC---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 229 KETLRRVKPAVADGP---RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 229 ~~~~~~a~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+..|++++...+... .....+.+.+++++..+|+++.++.++|.+|..+|++++|+.+|+++++..|.++...
T Consensus 392 i~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 999999988777764 3345566778899999999999999999999999999999999999999998877643
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1.6e-19 Score=171.46 Aligned_cols=202 Identities=15% Similarity=0.145 Sum_probs=179.1
Q ss_pred chhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 28 VSRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 28 ~l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
....+...+. ++...|.....++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++
T Consensus 38 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp ----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444444 445568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 107 RSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 107 l~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
++..|.+. .++..+|.++...|++++|+..|++++.. .|++..++..+|.++
T Consensus 118 ~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 118 LRAGMENG--DLFYMLGTVLVKLEQPKLALPYLQRAVEL--------------------------NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHTCCSH--HHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHH
T ss_pred HHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHH
Confidence 99999887 67888999999999999999999999998 899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850 187 MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 265 (524)
Q Consensus 187 ~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 265 (524)
...|++++|+..|++++...|++.. +..+|.++..+|++++|+.+|+ +++...|++..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~~~p~~~~ 228 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD---------------------KAIDIQPDHML 228 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH---------------------HHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH---------------------HHHccCcchHH
Confidence 9999999999999999999999998 9999999999999999999999 78888899998
Q ss_pred HHHHHHHHHHHcC
Q 009850 266 EMMNKGGDRVEQS 278 (524)
Q Consensus 266 a~~~lg~~~~~~g 278 (524)
++..++.+....+
T Consensus 229 ~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 229 ALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHHHHhhcc
Confidence 8888876655443
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.4e-19 Score=190.02 Aligned_cols=251 Identities=12% Similarity=0.050 Sum_probs=204.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINA---------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---- 111 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~---------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---- 111 (524)
....|..+|.++..+|++++|+.+|++++++ +|....+|.++|.+|..+|++++|+.+|++++.+.+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567889999999999999999999999986 677888999999999999999999999999998744
Q ss_pred ----CcHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhhccHhhhcccH-------------HHHHHHhHHHHHhcC
Q 009850 112 ----DQAQESLDNILLDLYKRC--GRLDDQIALLKHKLYLIQQGLAFNGKRT-------------KTARSQGKKFQVSVE 172 (524)
Q Consensus 112 ----~~~~~~l~~~lg~~~~~~--g~~~eA~~~~~~al~l~~~~~~~~~~~~-------------~~a~~~~~~~~~~~~ 172 (524)
..+ .++..+|..+... +++++|+.+|++++++.+.......... ++...+.+ .+.++
T Consensus 130 ~~~~~~~--~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~--al~l~ 205 (472)
T 4g1t_A 130 PYRIESP--ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ--AIRLN 205 (472)
T ss_dssp SSCCCCH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH--HHHHC
T ss_pred ccchhhH--HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH--HhhcC
Confidence 223 5556666666554 5799999999999999865443221111 11111212 24558
Q ss_pred CCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----
Q 009850 173 QEATRLLGNLGWALMQQ----NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP---- 243 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~----g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---- 243 (524)
|+++.++.++|..+... |++++|+.+|++++..+|++.. +.++|.+|...|++++|+..|++++...|...
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999998776654 6788999999999999999999 99999999999999999999999988877753
Q ss_pred ----------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850 244 ----------------------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 244 ----------------------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P 295 (524)
...+.|+..|++++...|....++..+|.++...|++++|+..|++++..+|
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 1235678899999999999999999999999999999999999999999887
Q ss_pred CCCC
Q 009850 296 CKDH 299 (524)
Q Consensus 296 ~~~~ 299 (524)
.+..
T Consensus 366 ~~~~ 369 (472)
T 4g1t_A 366 TPVA 369 (472)
T ss_dssp CHHH
T ss_pred CChH
Confidence 6544
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=3.7e-19 Score=173.35 Aligned_cols=219 Identities=12% Similarity=0.080 Sum_probs=184.7
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
|..+.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .|++++|+.+|+++++.. ++ ..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--NG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH--HH
Confidence 45677899999999999999999999999998 7888999999999999 999999999999999986 44 67
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cC
Q 009850 119 DNILLDLYKR----CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QN 190 (524)
Q Consensus 119 ~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g 190 (524)
++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.+|.. .+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------------------------~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------------------------KYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------------------------CCccHHHHHHHHHHcCCCccc
Confidence 7889999999 99999999999999876 467888999999998 89
Q ss_pred CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccC---------------CCcCHHHHH
Q 009850 191 NYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVAD---------------GPRGVDSHL 250 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~---------------~~~~~~~A~ 250 (524)
++++|+.+|+++++.+ +.. ++++|.+|.. .+++++|+.+|+++...... ..++.++|+
T Consensus 129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 9999999999998876 445 8888999988 88999999999887443211 135677788
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCCCCCCC
Q 009850 251 KAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 251 ~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..|+++++..+ ..+++++|.+|.. .+++++|+..|+++++..|.+..
T Consensus 207 ~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 207 ARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888765 7788889999888 88899999999988888776544
No 39
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.2e-19 Score=189.01 Aligned_cols=198 Identities=16% Similarity=0.141 Sum_probs=173.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG 130 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g 130 (524)
.+|.++...|++++|+..|++++...|.+..++..+|.+|...|++++|+..|++++..+|+++ .++..+|.+|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC
Confidence 4477799999999999999999999999999999999999999999999999999999999987 78889999999999
Q ss_pred ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH------------HHHHHHcCCHHHHHHH
Q 009850 131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL------------GWALMQQNNYIEAEDA 198 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L------------g~~~~~~g~~~eAi~~ 198 (524)
++++|+..|++++.+ +|++..++..+ |.++...|++++|+.+
T Consensus 226 ~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 226 DHELSLSEVRECLKL--------------------------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp CHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988 66666666555 8888888888888888
Q ss_pred HHHHHhhCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhC
Q 009850 199 YRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQML 260 (524)
Q Consensus 199 ~~~Al~l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~ 260 (524)
|++++.+.|+++. +.++|.++.+.|++++|+..|++++...|... +++++|+..|+++++..
T Consensus 280 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8888888888742 67788888888888888888888877666553 77888888888999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 009850 261 KDLESEMMNKGGDRVE 276 (524)
Q Consensus 261 p~~~~a~~~lg~~~~~ 276 (524)
|++..++..++.+...
T Consensus 360 p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRL 375 (450)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999999999965443
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2e-19 Score=178.31 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILL 123 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg 123 (524)
..++..++..+...|++++|+..+++++.. +|+++.+++.+|.++...|++++|+..|++ |++. .++..+|
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~--~~~~~l~ 137 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL--ECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH--HHHHHHH
Confidence 345666777777788888888888888765 588888888888888888888888888877 6665 5667778
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW--ALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~--~~~~~g~~~eAi~~~~~ 201 (524)
.+|...|++++|+..|+++++. +|++.......++ ++...|++++|+..|++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~--------------------------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQ--------------------------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--------------------------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888877 6776544433332 23344788888888888
Q ss_pred HHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 009850 202 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 280 (524)
Q Consensus 202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 280 (524)
+++..|+++. |+++|.++..+|++++|+..|+ +++...|+++.++.++|.++...|++
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~---------------------~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ---------------------EALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 8888888888 8888888888888888888888 88999999999999999999999999
Q ss_pred HHH-HHHHhhcccCCCCCCCcc
Q 009850 281 FDA-FLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 281 ~eA-i~~~~~al~~~P~~~~~l 301 (524)
.++ ...++++++.+|.++.+.
T Consensus 251 ~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 251 PEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHH
Confidence 875 578899999999987644
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=7.9e-20 Score=173.20 Aligned_cols=177 Identities=11% Similarity=-0.003 Sum_probs=160.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~ 154 (524)
.+.++.+++.+|.++...|++++|+..|++++..+| .+. .+++.+|.++...|++++|+..|++++..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------- 71 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKK--------- 71 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHh---------
Confidence 356779999999999999999999999999999998 776 56677999999999999999999999998
Q ss_pred ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-------H-HHHHHHHHHHcCCHH
Q 009850 155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-------K-MCNLGICLMKQGRIG 226 (524)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-------~-~~~Lg~~~~~~G~~~ 226 (524)
+|++..++..+|.++...|++++|+..|+++++++|+++ . |+++|.++..+|+++
T Consensus 72 -----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 72 -----------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp -----------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 899999999999999999999999999999999999997 5 889999999999999
Q ss_pred HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH------------------------
Q 009850 227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRL------------------------ 280 (524)
Q Consensus 227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~------------------------ 280 (524)
+|+..|+ ++++..|+ .+.+++++|.+|..+|+.
T Consensus 135 ~A~~~~~---------------------~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 193 (228)
T 4i17_A 135 KAEENYK---------------------HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKAD 193 (228)
T ss_dssp HHHHHHH---------------------HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999 66667777 777888888888888777
Q ss_pred ---HHHHHHHhhcccCCCCCCCcc
Q 009850 281 ---FDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 281 ---~eAi~~~~~al~~~P~~~~~l 301 (524)
++|+..|+++++.+|.+....
T Consensus 194 ~~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 194 AAFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHH
Confidence 999999999999999987644
No 42
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=9.7e-20 Score=176.56 Aligned_cols=212 Identities=12% Similarity=0.016 Sum_probs=168.0
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QE 116 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~ 116 (524)
..+..+..++.+|..++..|++++|+..|++++...|++ ..+++.+|.++..+|++++|+..|++++..+|+++ ..
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 346678899999999999999999999999999999998 99999999999999999999999999999999653 24
Q ss_pred HHHHHHHHHHHH--------cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850 117 SLDNILLDLYKR--------CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ 188 (524)
Q Consensus 117 ~l~~~lg~~~~~--------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~ 188 (524)
.+++.+|.++.. .|++++|+..|++++...+....... +..... ...+.....++.+|.+|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----a~~~~~----~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD-----ATQKIR----ELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH-----HHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH-----HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 678899999999 99999999999999998433211110 000000 0011122334899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc---HH-HHHHHHHHHHc----------CCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850 189 QNNYIEAEDAYRRALSIAPDN---NK-MCNLGICLMKQ----------GRIGEAKETLRRVKPAVADGPRGVDSHLKAYE 254 (524)
Q Consensus 189 ~g~~~eAi~~~~~Al~l~P~~---~~-~~~Lg~~~~~~----------G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~ 254 (524)
.|+|++|+..|++++...|++ .. ++.+|.+|..+ |++++|+..|+
T Consensus 161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~--------------------- 219 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE--------------------- 219 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH---------------------
T ss_pred ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH---------------------
Confidence 999999999999999999984 44 89999999987 78888888888
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCCHHH
Q 009850 255 RAQQMLKDLE---SEMMNKGGDRVEQSRLFD 282 (524)
Q Consensus 255 ~al~~~p~~~---~a~~~lg~~~~~~g~~~e 282 (524)
+++...|+.+ .+...++.++...+++++
T Consensus 220 ~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 220 RLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 6666677664 455666667766666554
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=185.35 Aligned_cols=237 Identities=21% Similarity=0.226 Sum_probs=187.9
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--- 110 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--- 110 (524)
.|....+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3455667999999999999999999999999994 67778899999999999999999999999999884
Q ss_pred --CC-cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 111 --SD-QAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 111 --p~-~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
++ .....++..+|.+|...|++++|+.+|++++.+..... -...|....++.++|.++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL------------------GKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc------------------CCCChHHHHHHHHHHHHHH
Confidence 22 22246788999999999999999999999998721100 0113455788999999999
Q ss_pred HcCCHHHHHHHHHHHHhh--------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC----------------
Q 009850 188 QQNNYIEAEDAYRRALSI--------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG---------------- 242 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l--------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~---------------- 242 (524)
..|++++|+.+|++++.+ .|.... +.++|.++..+|++++|+.+|++++...+..
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 999999999999999998 555555 8899999999999999999999986532210
Q ss_pred ------------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 243 ------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 243 ------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
.+.+.++...+.++....|....++..+|.+|..+|++++|+..|++++++.|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 012223345566777778888999999999999999999999999999987664
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=6.1e-20 Score=194.64 Aligned_cols=192 Identities=14% Similarity=0.060 Sum_probs=180.4
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850 60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA-EEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL 138 (524)
Q Consensus 60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~-~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~ 138 (524)
+.+++|+..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++ .++..+|.+|...|++++|+.+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV--EAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Confidence 3477888888888888999999999999999999999 999999999999999997 7889999999999999999999
Q ss_pred HHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCc
Q 009850 139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ---------NNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 139 ~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~P~~ 209 (524)
|++++++ +|+ ..++.++|.++... |++++|+.+|+++++++|++
T Consensus 160 ~~~al~~--------------------------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 160 FSGALTH--------------------------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HHHHHTT--------------------------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhh--------------------------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 9999998 888 69999999999999 99999999999999999999
Q ss_pred HH-HHHHHHHHHHc--------CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc
Q 009850 210 NK-MCNLGICLMKQ--------GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK---DLESEMMNKGGDRVEQ 277 (524)
Q Consensus 210 ~~-~~~Lg~~~~~~--------G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~ 277 (524)
.. |+++|.+|..+ |++++|+.+|+ +++...| +.+.+++++|.+|..+
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~---------------------~al~~~p~~~~~~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYA---------------------QAEKVDRKASSNPDLHLNRATLHKYE 271 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------------HHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHH---------------------HHHHhCCCcccCHHHHHHHHHHHHHc
Confidence 99 99999999999 88888888888 7888889 9999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCCCCcc
Q 009850 278 SRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 278 g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
|++++|+..|+++++.+|.+....
T Consensus 272 g~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 272 ESYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999987644
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.3e-19 Score=168.97 Aligned_cols=177 Identities=13% Similarity=0.093 Sum_probs=157.7
Q ss_pred hhhhhhHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHcCCHHHHHH
Q 009850 30 RTRSDSFHA-IHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV-------DSALKDMAIVMKQQNRAEEAIE 101 (524)
Q Consensus 30 ~~~~~~~~~-~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~a~~~La~~~~~~g~~~eAi~ 101 (524)
..+...+.. +... ....+|+.+|.++...|++++|+..|++++...|++ ..++..+|.++...|++++|+.
T Consensus 22 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 22 DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 334444433 3334 778899999999999999999999999999998876 7999999999999999999999
Q ss_pred HHHHHHHhCC--------------------------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 102 AIKSLRSRCS--------------------------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 102 ~~~~al~~~p--------------------------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
+|++++.+.| .++ .++..+|.++...|++++|+..|++++..
T Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------- 168 (258)
T 3uq3_A 101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA--EEARLEGKEYFTKSDWPNAVKAYTEMIKR---------- 168 (258)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------
Confidence 9999999554 333 67788899999999999999999999988
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+|.++.++..+|.++...|++++|+.+|+++++.+|++.. ++.+|.++..+|++++|+.+|++
T Consensus 169 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 169 ----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 99999999999999999999995
Q ss_pred h
Q 009850 235 V 235 (524)
Q Consensus 235 a 235 (524)
+
T Consensus 233 a 233 (258)
T 3uq3_A 233 A 233 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=1.7e-19 Score=174.65 Aligned_cols=221 Identities=10% Similarity=0.058 Sum_probs=186.5
Q ss_pred hhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 29 SRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV----DSALKDMAIVMKQQNRAEEAIEAI 103 (524)
Q Consensus 29 l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~La~~~~~~g~~~eAi~~~ 103 (524)
...+...+. ++...|....+++.+|.++...|++++|+..|++++. .|.+ ..++..+|.++...|++++|+.+|
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 97 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 344444444 4456788888999999999999999999999999999 4333 455999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850 104 KSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG 183 (524)
Q Consensus 104 ~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg 183 (524)
++++..+|.+. .++..+|.+|...|++++|+.+|++++++ +|.++.+++++|
T Consensus 98 ~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------------------------~~~~~~~~~~l~ 149 (272)
T 3u4t_A 98 QAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------------------------TTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------------------------SCCCHHHHHHHH
T ss_pred HHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhc--------------------------CCCcHHHHHHHH
Confidence 99999999987 78899999999999999999999999988 899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCC---HHHHHHHHHHhcccc---cCC--------------
Q 009850 184 WALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR---IGEAKETLRRVKPAV---ADG-------------- 242 (524)
Q Consensus 184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~---~~eA~~~~~~a~~~~---~~~-------------- 242 (524)
...+..+++++|+..|+++++++|++.. ++.+|.++..+|+ +++|+..|+++.... ++.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 5555567999999999999999999988 9999999999999 888999999985443 321
Q ss_pred ----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850 243 ----PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 243 ----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 278 (524)
.+++++|+..|++++...|+++.++-.++.+....+
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 178899999999999999999999998887765443
No 47
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=7.7e-20 Score=202.42 Aligned_cols=197 Identities=13% Similarity=-0.032 Sum_probs=176.5
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAI--------NAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al--------~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
.|..+.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 355666777666 78999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
. .+++.+|.+|...|++++|+..|++++++ +|+++.+++++|.++...|+++
T Consensus 467 ~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~P~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 467 W--RLVWYRAVAELLTGDYDSATKHFTEVLDT--------------------------FPGELAPKLALAATAELAGNTD 518 (681)
T ss_dssp H--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCSHHHHHHHHHHHHHTCCC
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHcCChH
Confidence 7 78899999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 194 EAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 194 eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
+ +.+|+++++++|++.. |+++|.++..+|++++|+..|+ +++++.|++..+++++|.
T Consensus 519 ~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~---------------------~al~l~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 519 E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD---------------------EVPPTSRHFTTARLTSAV 576 (681)
T ss_dssp T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------TSCTTSTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH---------------------hhcccCcccHHHHHHHHH
Confidence 9 9999999999999999 9999999999999999999999 677888999999999999
Q ss_pred HHHHcCC--------HHHHHHHHhhcc
Q 009850 273 DRVEQSR--------LFDAFLGSSSIW 291 (524)
Q Consensus 273 ~~~~~g~--------~~eAi~~~~~al 291 (524)
++...++ +.+|+..+..+.
T Consensus 577 ~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 577 TLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9977665 555555555443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=5.4e-19 Score=170.98 Aligned_cols=202 Identities=11% Similarity=-0.015 Sum_probs=166.1
Q ss_pred hhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009850 32 RSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC 110 (524)
Q Consensus 32 ~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~ 110 (524)
+...+. ++...|....+|+.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++...
T Consensus 62 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 62 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 333343 4456788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850 111 SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN 190 (524)
Q Consensus 111 p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g 190 (524)
|++.... ..+ .++...|++++|+..+++++.. .|.+...+ .++.++...+
T Consensus 142 ~~~~~~~--~~~-~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~-~~~~~~~~~~ 191 (275)
T 1xnf_A 142 PNDPFRS--LWL-YLAEQKLDEKQAKEVLKQHFEK--------------------------SDKEQWGW-NIVEFYLGNI 191 (275)
T ss_dssp TTCHHHH--HHH-HHHHHHHCHHHHHHHHHHHHHH--------------------------SCCCSTHH-HHHHHHTTSS
T ss_pred CCChHHH--HHH-HHHHHhcCHHHHHHHHHHHHhc--------------------------CCcchHHH-HHHHHHHHhc
Confidence 9986322 222 3446679999999999999887 66665554 4777888899
Q ss_pred CHHHHHHHHHHHHhhCCCc----HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850 191 NYIEAEDAYRRALSIAPDN----NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 265 (524)
Q Consensus 191 ~~~eAi~~~~~Al~l~P~~----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 265 (524)
++++|+..+++++...|.. .. +..+|.++..+|++++|+.+|+ +++...|++.
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~al~~~p~~~- 249 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK---------------------LAVANNVHNF- 249 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHTTCCTTC-
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHhCCchhH-
Confidence 9999999999999887754 44 8999999999999999999999 5666666553
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 009850 266 EMMNKGGDRVEQSRLFDAFLGS 287 (524)
Q Consensus 266 a~~~lg~~~~~~g~~~eAi~~~ 287 (524)
...+.++...|++++|+.+|
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 33477888899999998887
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1e-18 Score=174.10 Aligned_cols=216 Identities=7% Similarity=-0.085 Sum_probs=192.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLV-------DKDP-------EKAIPLFWAAIN-AGDRVDSALKDMAIVMKQQNRAEEAIE 101 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~-------~g~~-------~~Ai~~~~~al~-~~p~~~~a~~~La~~~~~~g~~~eAi~ 101 (524)
+++...|..++.|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...|++++|..
T Consensus 41 ~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 120 (308)
T 2ond_A 41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 4556689999999999999874 5886 999999999999 799999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850 102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN 181 (524)
Q Consensus 102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~ 181 (524)
.|++++++.|.++. .++..+|.++.+.|++++|+..|+++++. +|....+|..
T Consensus 121 ~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~ 173 (308)
T 2ond_A 121 IYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED--------------------------ARTRHHVYVT 173 (308)
T ss_dssp HHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------------------------TTCCTHHHHH
T ss_pred HHHHHHhccccCcc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------------------CCCCHHHHHH
Confidence 99999999998762 27888999999999999999999999988 7888778877
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850 182 LGWALMQ-QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM 259 (524)
Q Consensus 182 Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 259 (524)
.+.+... .|++++|+.+|+++++.+|+++. |.++|..+..+|++++|+..|+ +++..
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~---------------------~al~~ 232 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE---------------------RVLTS 232 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH---------------------HHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHhc
Confidence 6666544 79999999999999999999999 9999999999999999999999 55663
Q ss_pred ---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 260 ---LK-DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 260 ---~p-~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
.| +....|..++..+...|++++|...++++++..|.+...
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 44 367889999999999999999999999999999987653
No 50
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=3e-19 Score=167.67 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKD----------------MAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~----------------La~~~~~~g~~~eAi~~~~~al~ 108 (524)
..+.++..|..++..|++++|+.+|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850 109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ 188 (524)
Q Consensus 109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~ 188 (524)
++|+++ .++..+|.+|...|++++|+.+|++++++ +|+++.+++++|.+|..
T Consensus 83 ~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 83 KAPNNV--DCLEACAEMQVCRGQEKDALRMYEKILQL--------------------------EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHH
T ss_pred HCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHHHHHH
Confidence 999997 78899999999999999999999999999 99999999999999987
Q ss_pred cCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 189 QNN--YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 189 ~g~--~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
.|+ ...+...|++++...|....++++|.++..+|++++|+.+|++++...|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 764 5667888888875433332388899999999999999999995544444
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=3.7e-18 Score=169.10 Aligned_cols=191 Identities=15% Similarity=0.144 Sum_probs=167.2
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
.|..+..++.+|.++...|++++|+..|++ |++.+++..+|.++..+|++++|+..|+++++.+|++....+...
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 488999999999999999999999999998 899999999999999999999999999999999999864343333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
+..++...|++++|+.+|++++.. +|+++.+++++|.++...|++++|+..|++
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~--------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADK--------------------------CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHH--------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555669999999999999998 899999999999999999999999999999
Q ss_pred HHhhCCCcHH-HHHHHHHHHHcCCHHHH-HHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850 202 ALSIAPDNNK-MCNLGICLMKQGRIGEA-KETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR 279 (524)
Q Consensus 202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA-~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 279 (524)
++.++|+++. +.++|.++..+|++.++ ..+++ ++++..|+++.+. ....+.+.
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~---------------------~~~~~~P~~~~~~----d~~~~~~~ 280 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS---------------------QLKDAHRSHPFIK----EYRAKEND 280 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH---------------------HHHHHCTTCHHHH----HHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH---------------------HHHHhCCCChHHH----HHHHHHHH
Confidence 9999999999 99999999999999875 56767 7788888887654 34566677
Q ss_pred HHHHHHHHh
Q 009850 280 LFDAFLGSS 288 (524)
Q Consensus 280 ~~eAi~~~~ 288 (524)
++++...|.
T Consensus 281 fd~~~~~~~ 289 (291)
T 3mkr_A 281 FDRLVLQYA 289 (291)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 777777664
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=2e-18 Score=155.96 Aligned_cols=168 Identities=16% Similarity=0.154 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|+.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|++. .++..+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999887 677889999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
+...|++++|+.+|++++.. +|.+..++..+|.++...|++++|+.+|++++..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--------------------------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 99999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 206 APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 206 ~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
.|++.. +..+|.++...|++++|+.+++++....++
T Consensus 140 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999988 999999999999999999999976544433
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=1.2e-17 Score=159.85 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=159.2
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS--RCSDQAQ 115 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~--~~p~~~~ 115 (524)
++...|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++. ..|.+.
T Consensus 63 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 141 (252)
T 2ho1_A 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS- 141 (252)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHH-
T ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccH-
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999 667665
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
.++..+|.++...|++++|+.+|+++++. +|.+..++..+|.++...|++++|
T Consensus 142 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 142 -RVFENLGLVSLQMKKPAQAKEYFEKSLRL--------------------------NRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CcccHHHHHHHHHHHHHcCCHHHH
Confidence 67788999999999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 196 EDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+.+|++++...|++.. +..++.++...|++++|..++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999988 99999999999999999999994
No 54
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=8.4e-20 Score=162.47 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=134.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG 130 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g 130 (524)
.||.++..+|++++|+..+++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|+++ .++..+|.+|...|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC
Confidence 4788889999999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCc
Q 009850 131 RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA-YRRALSIAPDN 209 (524)
Q Consensus 131 ~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~-~~~Al~l~P~~ 209 (524)
++++|+.+|++++++ +|+++.+++++|.+|...|++++|... ++++++++|++
T Consensus 80 ~~~~A~~~~~~al~~--------------------------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL--------------------------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 999999999999999 999999999999999999999887766 59999999999
Q ss_pred HH-HHHHHHHHHHcCC
Q 009850 210 NK-MCNLGICLMKQGR 224 (524)
Q Consensus 210 ~~-~~~Lg~~~~~~G~ 224 (524)
+. +..++.++...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 99 8888999888875
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=1e-18 Score=179.79 Aligned_cols=232 Identities=16% Similarity=0.102 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C-cHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---D-QAQES 117 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~-~~~~~ 117 (524)
...++.+|..++..|++++|+.+|++++...|++. .++..+|.++...|++++|+.+|++++.+.. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34577899999999999999999999999999987 5799999999999999999999999988731 1 12247
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC------
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN------ 191 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~------ 191 (524)
++..+|.+|...|++++|+.+|++++.+... ....+....++.++|.+|...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQ--------------------LGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------------hhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 8889999999999999999999999987311 00012334566666666666666
Q ss_pred -----------HHHHHHHHHHHHhhCC------CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC-----------
Q 009850 192 -----------YIEAEDAYRRALSIAP------DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------- 242 (524)
Q Consensus 192 -----------~~eAi~~~~~Al~l~P------~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~----------- 242 (524)
+++|+.+|++++.+.+ .... +.++|.++..+|++++|+.+|++++...+..
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6666666666665431 1112 5566666666666666666666654332211
Q ss_pred --------CcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 243 --------PRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 243 --------~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
.+++++|+..|++++...+.. ..++..+|.++..+|++++|+..|++++...+..
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 155566666666777666543 5678888999999999999999998888775544
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=8.2e-19 Score=179.27 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc-HH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-AQ 115 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-~~ 115 (524)
.....++.+|..++..|++++|+.+|++++...|++. .++..+|.++...|++++|+.++++++.+.+ +. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455688999999999999999999999999999884 6788999999999999999999999988743 12 22
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
..++..+|.+|...|++++|+.+|++++.+.
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 117 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999874
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=8.2e-19 Score=179.86 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=183.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINA---GD---RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-----AQES 117 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~---~p---~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~~ 117 (524)
|+.+|..+...|++++|+.+|++++.. .+ ..+.+++.+|.+|..+|++++|+.++++++.+.+.. ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 23 356889999999999999999999999999986532 1246
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
++..+|.+|...|++++|+.+|++++.+.+.. ...+....+++++|.+|...|++++|+.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--------------------KQPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 78899999999999999999999999873210 0012225689999999999999999999
Q ss_pred HHHHHHhh-----C-CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC------------------CcC---HHHH
Q 009850 198 AYRRALSI-----A-PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG------------------PRG---VDSH 249 (524)
Q Consensus 198 ~~~~Al~l-----~-P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~------------------~~~---~~~A 249 (524)
+|++++.+ + |.... +.++|.++..+|++++|+.++++++...... .+. ..+|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 325 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999994 5 66666 9999999999999999999999986543211 133 5556
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 250 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
+..+++. ...+....++..+|.+|..+|++++|+..|++++.....
T Consensus 326 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 326 FDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6666555 334455678899999999999999999999999876544
No 58
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=1.7e-18 Score=171.40 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--H--HHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGD------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--A--QES 117 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~--~~~ 117 (524)
.|...|.++...|++++|+.+|.+++.+.+ ....++.++|.+|..+|++++|+.+|++++.+.+.. . ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577788899999999999999999999742 236789999999999999999999999999998743 1 135
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Q 009850 118 LDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ-EATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 118 l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p-~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
++..+|.+|... |++++|+.+|++++++.+... ++ ....++.++|.++..+|+|++|
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---------------------~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---------------------SVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---------------------ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 778999999996 999999999999999832100 00 1146789999999999999999
Q ss_pred HHHHHHHHhhCCCcHH--------HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHH
Q 009850 196 EDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 267 (524)
Q Consensus 196 i~~~~~Al~l~P~~~~--------~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 267 (524)
+.+|++++.+.|++.. +.++|.|+..+|++++|+.+|++++...|..... .....+
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~----------------~~~~~l 241 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS----------------RESNFL 241 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------------------HHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc----------------HHHHHH
Confidence 9999999999987532 6889999999999999999999765544432210 011234
Q ss_pred HHHHHHHH--HcCCHHHHHHHHhhcccCCCCCCC
Q 009850 268 MNKGGDRV--EQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 268 ~~lg~~~~--~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
..++..+. ..+++.+|+..|.+++.++|....
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 45555554 457899999999999999887644
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=3e-18 Score=165.97 Aligned_cols=183 Identities=11% Similarity=0.015 Sum_probs=160.8
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh
Q 009850 73 INAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA 151 (524)
Q Consensus 73 l~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 151 (524)
....|.++..++.+|..+...|++++|+..|++++..+|+++. ..+++.+|.+|...|++++|+..|++++...+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--- 84 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--- 84 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---
Confidence 4568899999999999999999999999999999999998722 278889999999999999999999999998221
Q ss_pred hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCcHH-H----------
Q 009850 152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ--------QNNYIEAEDAYRRALSIAPDNNK-M---------- 212 (524)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~--------~g~~~eAi~~~~~Al~l~P~~~~-~---------- 212 (524)
+|..+.+++.+|.++.. .|++++|+..|++++...|++.. +
T Consensus 85 --------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 85 --------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred --------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 23447899999999999 99999999999999999999854 3
Q ss_pred -------HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc-----
Q 009850 213 -------CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQ----- 277 (524)
Q Consensus 213 -------~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~----- 277 (524)
+.+|.+|..+|++++|+..|+ +++...|+ ...+++.+|.+|..+
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~---------------------~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 203 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYE---------------------AVFDAYPDTPWADDALVGAMRAYIAYAEQSV 203 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH---------------------HHHHHCCCCchHHHHHHHHHHHHHHhcccch
Confidence 889999999999999999999 66666676 567899999999977
Q ss_pred -----CCHHHHHHHHhhcccCCCCCCC
Q 009850 278 -----SRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 278 -----g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|++++|+..|+++++..|.+..
T Consensus 204 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 204 RARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred hhcccchHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999998865
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=8.8e-19 Score=180.30 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=189.0
Q ss_pred HhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 39 IHKVPVGD----TPYVRAKNVQLVDKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 39 ~~~~p~~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
+...|... ..|+.+|.++...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.+|++++.
T Consensus 75 l~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 75 IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445554 47899999999999999999999999987 577788999999999999999999999999998
Q ss_pred hCCC----cHHHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850 109 RCSD----QAQESLDNILLDLYKRCGR-----------------LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF 167 (524)
Q Consensus 109 ~~p~----~~~~~l~~~lg~~~~~~g~-----------------~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~ 167 (524)
+.+. .....++..+|.+|...|+ +++|+.+|++++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~------------------- 215 (411)
T 4a1s_A 155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD------------------- 215 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-------------------
Confidence 8431 1223678899999999999 88888888888776211
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH------H-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN------K-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~------~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
....+....++.++|.++...|++++|+.+|++++.+.+... . ++++|.++..+|++++|+.+|++++...+
T Consensus 216 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 216 -LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 000133456888888888888888888888888888765431 1 67888888888888888888888755443
Q ss_pred CC-------------------CcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850 241 DG-------------------PRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 241 ~~-------------------~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P 295 (524)
.. .+++++|+..+++++...+.. ..++..+|.+|..+|++++|+..|+++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 22 167788888888888875433 55899999999999999999999999988765
Q ss_pred CC
Q 009850 296 CK 297 (524)
Q Consensus 296 ~~ 297 (524)
..
T Consensus 375 ~~ 376 (411)
T 4a1s_A 375 XX 376 (411)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=3.8e-17 Score=152.56 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=160.2
Q ss_pred hhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 009850 31 TRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-NRAEEAIEAIKSLRS 108 (524)
Q Consensus 31 ~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-g~~~eAi~~~~~al~ 108 (524)
.+...+. ++...|.....|+.+|.++...|++++|+.+|++++..+|++..++..+|.++... |++++|+..+++++.
T Consensus 26 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 26 QATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3344443 44567888899999999999999999999999999999999999999999999999 999999999999999
Q ss_pred --hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 109 --RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 109 --~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
..|... .++..+|.++...|++++|+..|+++++. +|.+..++..+|.++
T Consensus 106 ~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 106 DPTYPTPY--IANLNKGICSAKQGQFGLAEAYLKRSLAA--------------------------QPQFPPAFKELARTK 157 (225)
T ss_dssp STTCSCHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHH
T ss_pred CcCCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCchHHHHHHHHH
Confidence 455554 67789999999999999999999999998 899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC-CcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 187 MQQNNYIEAEDAYRRALSIAP-DNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 187 ~~~g~~~eAi~~~~~Al~l~P-~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
...|++++|+.+|++++...| .+.. +..++.++...|++++|..+++.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999999999 8888 88889999999999999999883
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=5.8e-18 Score=152.85 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=162.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
...++..+|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------- 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV--DVALHLGIAYVKTGAVDRGTELLERSLAD------------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence 456788999999999999999999999999999886 67889999999999999999999999998
Q ss_pred HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
+|.+..++..+|.++...|++++|+.+|++++...|++.. +..+|.++...|++++|+.+++
T Consensus 72 -------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~---- 134 (186)
T 3as5_A 72 -------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK---- 134 (186)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH----
T ss_pred -------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH----
Confidence 8999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 238 AVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 238 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
+++...|+...++..+|.++...|++++|+..++++++..|.+...
T Consensus 135 -----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 135 -----------------IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred -----------------HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 6777889999999999999999999999999999999998877653
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=2.1e-18 Score=170.45 Aligned_cols=227 Identities=16% Similarity=0.139 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc-HHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV----DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-AQESL 118 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-~~~~l 118 (524)
..++..|..++..|++++|+.+|++++...|++ ..++..+|.++...|++++|+.++++++...+ +. ....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 357889999999999999999999999999998 46788999999999999999999999988743 11 22467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccH--------------hhhc-cc--------------------HHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGL--------------AFNG-KR--------------------TKTARSQ 163 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~--------------~~~~-~~--------------------~~~a~~~ 163 (524)
+..+|.+|...|++++|+..+++++.+.+... .+.. +. .+.+...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88999999999999999999999998742210 0000 11 1112111
Q ss_pred -hHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHH
Q 009850 164 -GKKFQVSV----EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKET 231 (524)
Q Consensus 164 -~~~~~~~~----~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~ 231 (524)
.+...... .+....++.++|.++...|++++|+.+|++++.+.+.. .. +.++|.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111100 12224456666666666666666666666666553321 11 55566666666666666666
Q ss_pred HHHhcccccCCCcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 232 LRRVKPAVADGPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 232 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
++++ +...+.. ..++..+|.++...|++++|+..+++++...
T Consensus 246 ~~~a---------------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 246 YKKT---------------------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHH---------------------HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 6654 3333222 3445555555555555555555555555443
No 64
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=4.1e-18 Score=159.92 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=147.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----------------HHHHHHHcCChHHHHHHHHHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI----------------LLDLYKRCGRLDDQIALLKHK 142 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~----------------lg~~~~~~g~~~eA~~~~~~a 142 (524)
..+.++..|..+...|++++|+..|++++..+|+++ .+++. +|.+|...|++++|+..|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467789999999999999999999999999999887 56666 999999999999999999999
Q ss_pred HHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH
Q 009850 143 LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK 221 (524)
Q Consensus 143 l~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~ 221 (524)
+++ +|+++.+++++|.++...|++++|+.+|+++++++|+++. |+++|.+|..
T Consensus 81 l~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 81 LQK--------------------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHH--------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999 9999999987
Q ss_pred cCCH--HHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 222 QGRI--GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 222 ~G~~--~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
.|+. ..+...|.+ ++...| ...+++++|.++...|++++|+.+|+++++.+|..
T Consensus 135 ~~~~~~~~~~~~~~~---------------------~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKK---------------------LSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC------------------------CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHH---------------------HhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7654 344555553 322111 22367889999999999999999999999999974
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=4.9e-18 Score=173.92 Aligned_cols=225 Identities=11% Similarity=0.032 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAG------DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ-----AQE 116 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~------p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~ 116 (524)
.|+.+|..++..|++++|+.+|++++... +..+.+++.+|.+|..+|++++|+.++++++.+.+.. ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 47789999999999999999999999863 2356789999999999999999999999999886531 225
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.++..+|.+|...|++++|+.+|++++.+.... ...+....++.++|.+|...|++++|+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------------------QNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 678899999999999999999999999872110 001123568999999999999999999
Q ss_pred HHHHHHHh-----hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------------cC---HHHH
Q 009850 197 DAYRRALS-----IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------------RG---VDSH 249 (524)
Q Consensus 197 ~~~~~Al~-----l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------------~~---~~~A 249 (524)
.+|++++. .+|.... ++++|.++..+|++++|+.++++++....... +. ..++
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999 6777756 89999999999999999999999866543321 23 4455
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 250 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
+..+++ ....+.....+..+|.+|...|++++|+..|++++..
T Consensus 323 l~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 323 LSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555554 2233445567889999999999999999999988754
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=177.13 Aligned_cols=249 Identities=16% Similarity=0.132 Sum_probs=189.8
Q ss_pred hhhhhhhHH-HHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHH
Q 009850 29 SRTRSDSFH-AIHKVPVG----DTPYVRAKNVQLVDKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAE 97 (524)
Q Consensus 29 l~~~~~~~~-~~~~~p~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~ 97 (524)
...+...+. ++...|.. ...|+.+|.+++..|++++|+.+|++++.. .|....++..+|.++...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 334444443 33445555 357899999999999999999999999887 3556778999999999999999
Q ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhhccHhhh
Q 009850 98 EAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGR--------------------LDDQIALLKHKLYLIQQGLAFN 153 (524)
Q Consensus 98 eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~--------------------~~eA~~~~~~al~l~~~~~~~~ 153 (524)
+|+.++++++.+.+.. ....++..+|.+|...|+ +++|+..|++++.+...
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~----- 179 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA----- 179 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----
Confidence 9999999999987632 124578899999999999 89999988888876211
Q ss_pred cccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHH
Q 009850 154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIG 226 (524)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~ 226 (524)
....+....++.++|.++...|++++|+.+|++++.+.+.. .. +.++|.++..+|+++
T Consensus 180 ---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 180 ---------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 00012335678888888888888888888888888765432 11 677888888888888
Q ss_pred HHHHHHHHhcccccCCC-------------------cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHH
Q 009850 227 EAKETLRRVKPAVADGP-------------------RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLF 281 (524)
Q Consensus 227 eA~~~~~~a~~~~~~~~-------------------~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~ 281 (524)
+|+.+|++++...+... +++++|+..|++++...+.. ..++..+|.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 88888888754433221 66777888888888775544 668889999999999999
Q ss_pred HHHHHHhhcccCCCCC
Q 009850 282 DAFLGSSSIWQPQPCK 297 (524)
Q Consensus 282 eAi~~~~~al~~~P~~ 297 (524)
+|+..|+++++..+..
T Consensus 325 ~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 325 QAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998775544
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.78 E-value=2.6e-18 Score=169.84 Aligned_cols=253 Identities=15% Similarity=0.099 Sum_probs=186.7
Q ss_pred hhhhhhHHH-HhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHH
Q 009850 30 RTRSDSFHA-IHKVPVG----DTPYVRAKNVQLVDKDPEKAIPLFWAAINA------GDRVDSALKDMAIVMKQQNRAEE 98 (524)
Q Consensus 30 ~~~~~~~~~-~~~~p~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------~p~~~~a~~~La~~~~~~g~~~e 98 (524)
..+...+.. +...|.. ...+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 334444433 3344555 367889999999999999999999999987 45567889999999999999999
Q ss_pred HHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhh-------
Q 009850 99 AIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGR--------------------LDDQIALLKHKLYLIQ------- 147 (524)
Q Consensus 99 Ai~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~--------------------~~eA~~~~~~al~l~~------- 147 (524)
|+.++++++.+.+.. ....++..+|.+|...|+ +++|+..+++++.+..
T Consensus 102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~ 181 (338)
T 3ro2_A 102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999886532 224577899999999999 9999999999887631
Q ss_pred -------ccHhh-hcccHHHHHH-HhHHHHHhcC-CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----
Q 009850 148 -------QGLAF-NGKRTKTARS-QGKKFQVSVE-QE---ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN----- 209 (524)
Q Consensus 148 -------~~~~~-~~~~~~~a~~-~~~~~~~~~~-p~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~----- 209 (524)
.+..+ ..+..+.+.. +.+.+..... ++ ...++.++|.++...|++++|+.+|++++.+.+..
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 11111 1133333333 3333332221 22 24589999999999999999999999999886554
Q ss_pred -HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 210 -NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 287 (524)
Q Consensus 210 -~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~ 287 (524)
.. +..+|.++..+|++++|+.++++++...+ .....+....++..+|.++...|++++|+..|
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ---------------ELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------------hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33 78999999999999999999996533221 11111223568899999999999999999999
Q ss_pred hhcccCCCCC
Q 009850 288 SSIWQPQPCK 297 (524)
Q Consensus 288 ~~al~~~P~~ 297 (524)
+++++..+..
T Consensus 327 ~~a~~~~~~~ 336 (338)
T 3ro2_A 327 EKHLEISREV 336 (338)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=6.4e-19 Score=156.76 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=132.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~ 164 (524)
.||.++...|++++|+..+++++..+|+++ ..++.+|.+|...|++++|+.+|++++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~------------------- 60 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINV------------------- 60 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Confidence 478899999999999999999999988776 56788999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHH-HHhcccccCC
Q 009850 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETL-RRVKPAVADG 242 (524)
Q Consensus 165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~-~~a~~~~~~~ 242 (524)
+|+++.+|+++|.+|...|++++|+.+|+++++++|+++. |+++|.++.++|++++|...| +
T Consensus 61 -------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~--------- 124 (150)
T 4ga2_A 61 -------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE--------- 124 (150)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH---------
T ss_pred -------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999 999999999999998877664 6
Q ss_pred CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009850 243 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR 279 (524)
Q Consensus 243 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 279 (524)
++++++|+++.++..++.++..+|+
T Consensus 125 ------------~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 125 ------------RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ------------HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred ------------HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8999999999999999999988875
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=1.2e-18 Score=168.46 Aligned_cols=219 Identities=22% Similarity=0.234 Sum_probs=168.9
Q ss_pred HHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-HHHHHHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQ-AQESLDNIL 122 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~-~~~~l~~~l 122 (524)
...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++... +++ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888899999888874 36678899999999999999999999999999884 322 224788899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.+|...|++++|+.+|++++.+..... ...+|....++.++|.++...|++++|+.+|+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVL------------------GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999998721100 0002556789999999999999999999999999
Q ss_pred Hhh--------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC---------CC-------------------cC
Q 009850 203 LSI--------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD---------GP-------------------RG 245 (524)
Q Consensus 203 l~l--------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~---------~~-------------------~~ 245 (524)
+.+ .|.... +.++|.++..+|++++|+.+|++++...+. .. ..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 998 555555 899999999999999999999998654211 00 11
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC
Q 009850 246 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 293 (524)
Q Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~ 293 (524)
+..+...+.......|....++..+|.+|..+|++++|+..|+++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122222222222344666778999999999999999999999998865
No 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=2.5e-17 Score=156.30 Aligned_cols=189 Identities=7% Similarity=-0.040 Sum_probs=151.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~ 120 (524)
.+..++.+|..++..|++++|+..|++++...|++ ..+++.+|.++..+|++++|+..|+++++.+|++.. ..+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45679999999999999999999999999998876 478999999999999999999999999999998753 23667
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850 121 ILLDLYKR------------------CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182 (524)
Q Consensus 121 ~lg~~~~~------------------~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L 182 (524)
.+|.++.. .|++++|+..|+++++..+.+............. ..........+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~---------~~~~~~~~~~~ 153 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL---------KDRLAKYEYSV 153 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 77887765 5789999999999998854433211100000000 01112344788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcH---H-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~---~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
|.+|...|++++|+..|+++++..|+++ . ++.+|.++.++|++++|+..++++....|..
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999986 3 8999999999999999999999775555443
No 71
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=8.3e-18 Score=166.49 Aligned_cols=193 Identities=13% Similarity=0.042 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
+...++.+|.++...|++++|+..|++++..+|++. .++..+|.++...|++++|+..|+++++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE--EAWRSLGLTQAENEKDGLAIIALNHARML------------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence 345688999999999999999999999999999987 67788999999999999999999999998
Q ss_pred HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHH--------------HH-HHHHc
Q 009850 159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNL--------------GI-CLMKQ 222 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~L--------------g~-~~~~~ 222 (524)
+|++..++..+|.++...|++++|+..|++++...|.+.. +..+ +. ++...
T Consensus 85 -------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 85 -------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSH
T ss_pred -------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc
Confidence 5555555666666666666666666555555555555544 3333 33 34455
Q ss_pred CCHHHHHHHHHHhcccccCCC-------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 009850 223 GRIGEAKETLRRVKPAVADGP-------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 289 (524)
Q Consensus 223 G~~~eA~~~~~~a~~~~~~~~-------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~ 289 (524)
|++++|+..++++....+... +++++|+..+++++...|+...++..+|.++...|++++|+..|++
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555544444332 4445555555555555555555555555555555555555555555
Q ss_pred cccCCCCCCC
Q 009850 290 IWQPQPCKDH 299 (524)
Q Consensus 290 al~~~P~~~~ 299 (524)
+++..|.+..
T Consensus 232 a~~~~~~~~~ 241 (327)
T 3cv0_A 232 ALDINPGYVR 241 (327)
T ss_dssp HHHHCTTCHH
T ss_pred HHHcCCCCHH
Confidence 5555554433
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4.5e-17 Score=162.22 Aligned_cols=183 Identities=7% Similarity=-0.040 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHH
Q 009850 63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQ-------QNRA-------EEAIEAIKSLRS-RCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-------~g~~-------~eAi~~~~~al~-~~p~~~~~~l~~~lg~~~~ 127 (524)
++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++|++. .+|..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 789999999999999999999999999874 5886 999999999999 799887 78899999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR-LLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
..|++++|...|++++++ +|.++. +|.++|.++.+.|++++|+..|+++++..
T Consensus 111 ~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--------------------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred hcCCHHHHHHHHHHHHhc--------------------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999988 888876 99999999999999999999999999999
Q ss_pred CCcHH-HHHHHHHHHH-cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850 207 PDNNK-MCNLGICLMK-QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 284 (524)
Q Consensus 207 P~~~~-~~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi 284 (524)
|.+.. |...+..... .|++++|+..|+ +++...|+.+.+|.++|..+..+|++++|+
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~---------------------~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFE---------------------LGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 98877 7666655443 799999998888 788889999999999999999999999999
Q ss_pred HHHhhcccCC
Q 009850 285 LGSSSIWQPQ 294 (524)
Q Consensus 285 ~~~~~al~~~ 294 (524)
..|++++...
T Consensus 224 ~~~~~al~~~ 233 (308)
T 2ond_A 224 VLFERVLTSG 233 (308)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhcc
Confidence 9999999863
No 73
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=5.3e-18 Score=154.53 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
.+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| ++ .....++.+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999999999999999999999 75 333444433
Q ss_pred H-HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 126 Y-KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 126 ~-~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
. ...+...+|+..|+++++. +|+++.+++++|.++...|++++|+..|+++++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~--------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAA--------------------------NPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhhcccchHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 2334445689999999998 999999999999999999999999999999999
Q ss_pred hCCCc--HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 205 IAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 205 l~P~~--~~-~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
.+|+. .. +.++|.++..+|+.++|+..|++++
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99975 44 8999999999999999999999753
No 74
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=2.5e-17 Score=162.74 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=155.8
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
.+|...+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+.. ....
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~~ 189 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR--YQGL 189 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH--HHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH--HHHH
Confidence 35888899999999999999999999999999999999999999999999999999999999999999999664 3445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
..+..+...++.++|+..|++++.. +|+++.+++++|.++...|++++|+..|+
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~--------------------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAE--------------------------NPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhc--------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5566677889999999999999999 99999999999999999999999999999
Q ss_pred HHHhhCCCc--HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 201 RALSIAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 201 ~Al~l~P~~--~~-~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
++++.+|++ .. +.++|.++..+|+.++|+..|++++
T Consensus 244 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 244 GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999998 66 9999999999999999999999753
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=1.4e-17 Score=184.36 Aligned_cols=175 Identities=11% Similarity=0.016 Sum_probs=164.1
Q ss_pred HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 74 NAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR--------SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 74 ~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al--------~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
..+|+++.+++..| ...|++++|+..|++++ ..+|++. .++..+|.+|...|++++|+..|++++++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV--ELPLMEVRALLDLGDVAKATRKLDDLAER 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch--hHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence 35788888888777 78899999999999999 8899887 67889999999999999999999999999
Q ss_pred hhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCC
Q 009850 146 IQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGR 224 (524)
Q Consensus 146 ~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~ 224 (524)
+|++..+|+++|.++...|++++|+..|+++++++|++.. |+++|.++..+|+
T Consensus 463 --------------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 463 --------------------------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN 516 (681)
T ss_dssp --------------------------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred --------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 225 IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 225 ~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
+++ +..|+ ++++.+|++..+++++|.++..+|++++|+..|+++++.+|.+....
T Consensus 517 ~~~-~~~~~---------------------~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 571 (681)
T 2pzi_A 517 TDE-HKFYQ---------------------TVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR 571 (681)
T ss_dssp CCT-TCHHH---------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH
T ss_pred hHH-HHHHH---------------------HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH
Confidence 999 99998 88999999999999999999999999999999999999999887654
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.74 E-value=1.6e-16 Score=150.79 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=153.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
.+..++.+|..+...|++++|+..|++++...|+++. ..+++.+|.+|...|++++|+..|+++++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~------------ 70 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL------------ 70 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------------
Confidence 4678999999999999999999999999999997642 367788999999999999999999999998
Q ss_pred HHHHHHhHHHHHhcCCCcH---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCcHH-H---
Q 009850 158 KTARSQGKKFQVSVEQEAT---RLLGNLGWALMQ------------------QNNYIEAEDAYRRALSIAPDNNK-M--- 212 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~---~a~~~Lg~~~~~------------------~g~~~eAi~~~~~Al~l~P~~~~-~--- 212 (524)
+|++. .+++.+|.++.. .|++++|+..|+++++..|++.. +
T Consensus 71 --------------~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 71 --------------NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp --------------CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred --------------CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 66664 478889988876 57999999999999999999854 2
Q ss_pred --------------HHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 009850 213 --------------CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRV 275 (524)
Q Consensus 213 --------------~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~ 275 (524)
..+|.+|...|++.+|+..|+ ++++..|+.+ .+++.+|.++.
T Consensus 137 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~---------------------~~l~~~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 137 KRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE---------------------GMLRDYPDTQATRDALPLMENAYR 195 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH---------------------HHHHHCcCCCccHHHHHHHHHHHH
Confidence 567888889999999988888 6777777765 67999999999
Q ss_pred HcCCHHHHHHHHhhcccCCCCCCCc
Q 009850 276 EQSRLFDAFLGSSSIWQPQPCKDHI 300 (524)
Q Consensus 276 ~~g~~~eAi~~~~~al~~~P~~~~~ 300 (524)
.+|++++|+..++.+....|.+...
T Consensus 196 ~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HcCCcHHHHHHHHHHHhhCCCchhh
Confidence 9999999999999999988887653
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=4.2e-17 Score=140.56 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=95.7
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHh
Q 009850 72 AINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLA 151 (524)
Q Consensus 72 al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 151 (524)
+..++|+.++++..+|.++++.|+|++|+..|+++++++|.++ .++..+|.+|..+|++++|+..|++++++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~------ 76 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRL------ 76 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHh------
Confidence 3446788888888888888888888888888888888888776 67777888888888888888888888877
Q ss_pred hhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850 152 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219 (524)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~ 219 (524)
+|+++.+|+++|.++..+|++++|+..|+++++++|++.. +.+++.|+
T Consensus 77 --------------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 --------------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred --------------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7888888888888888888888888888888888888877 77777663
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=1.2e-16 Score=158.06 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=148.0
Q ss_pred ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--HHHHHHHHHHHHHHHcCChHHHH
Q 009850 61 DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q--AQESLDNILLDLYKRCGRLDDQI 136 (524)
Q Consensus 61 ~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~--~~~~l~~~lg~~~~~~g~~~eA~ 136 (524)
++++|+.+|.++ |.+|...|++++|+.+|++++.+.+. + ....++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 599999999887 66889999999999999999998642 2 12467889999999999999999
Q ss_pred HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC-CcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc-----
Q 009850 137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ-EATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAPDN----- 209 (524)
Q Consensus 137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p-~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~----- 209 (524)
.+|++++.+.+..- ++ ....++.++|.+|... |++++|+.+|++++.+.|..
T Consensus 98 ~~~~~Al~l~~~~g---------------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 98 DSLENAIQIFTHRG---------------------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 99999998832100 11 1256899999999996 99999999999999998754
Q ss_pred -HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCH
Q 009850 210 -NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE-------SEMMNKGGDRVEQSRL 280 (524)
Q Consensus 210 -~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~a~~~lg~~~~~~g~~ 280 (524)
.. +.++|.++..+|++++|+.+|++ ++...|+.. .+++++|.++..+|++
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSK---------------------LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHH---------------------HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 33 78999999999999999999995 445444432 3688999999999999
Q ss_pred HHHHHHHhhcccCCCCCCC
Q 009850 281 FDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 281 ~eAi~~~~~al~~~P~~~~ 299 (524)
.+|+.+|++++.++|....
T Consensus 216 ~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHhhCCCCCC
Confidence 9999999999999998765
No 79
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.72 E-value=8.4e-16 Score=152.71 Aligned_cols=216 Identities=6% Similarity=-0.045 Sum_probs=164.0
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HHc---CCHHHHHHHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDK--DPEKAIPLFWAAINAGDRVDSALKDMAIVM----KQQ---NRAEEAIEAIKSLR 107 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g--~~~~Ai~~~~~al~~~p~~~~a~~~La~~~----~~~---g~~~eAi~~~~~al 107 (524)
.++...|....+|+..|.++...| ++++++..+..++..+|.+..+|+.++.++ ... +++++++..+.+++
T Consensus 58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 345556777777777777777777 777777777777777777777777777777 555 66777777777777
Q ss_pred HhCCCcHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850 108 SRCSDQAQESLDNILLDLYKRCGRLD--DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA 185 (524)
Q Consensus 108 ~~~p~~~~~~l~~~lg~~~~~~g~~~--eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~ 185 (524)
..+|.+. .+|+..+.++...|.++ +++.++.++++. +|.+..+|...+.+
T Consensus 138 ~~~pkny--~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------------------------d~~N~sAW~~R~~l 189 (306)
T 3dra_A 138 SSDPKNH--HVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------------------------DLKNNSAWSHRFFL 189 (306)
T ss_dssp HHCTTCH--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHH
T ss_pred HhCCCCH--HHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHH
Confidence 7777775 56666666667777766 777777777776 89999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHH-HHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850 186 LMQQNN------YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAK-ETLRRVKPAVADGPRGVDSHLKAYERAQ 257 (524)
Q Consensus 186 ~~~~g~------~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~-~~~~~a~~~~~~~~~~~~~A~~~~~~al 257 (524)
+...|+ ++++++++.+++..+|++.. |+.++.++...|+..+++ .++.++....
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~------------------ 251 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE------------------ 251 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG------------------
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc------------------
Confidence 988887 89999999999999999988 989999998888855544 3444332210
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc-CCCCCC
Q 009850 258 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ-PQPCKD 298 (524)
Q Consensus 258 ~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~-~~P~~~ 298 (524)
...+....++..++.++.+.|+.++|+.+|+.+.. .+|...
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 12377888999999999999999999999999986 788643
No 80
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=1.6e-15 Score=147.39 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=161.2
Q ss_pred hhhhhhhHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 009850 29 SRTRSDSFHAIHKVPVGDTPYVRAKNVQLV----DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAI 100 (524)
Q Consensus 29 l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi 100 (524)
...+...+..... +..+.+++.+|.++.. .|++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+
T Consensus 22 ~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~ 98 (273)
T 1ouv_A 22 FTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKAL 98 (273)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 3445555554444 6778899999999999 999999999999999985 78999999999999 99999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH
Q 009850 101 EAIKSLRSRCSDQAQESLDNILLDLYKR----CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT 176 (524)
Q Consensus 101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~ 176 (524)
.+|++++... ++ ..+..+|.+|.. .+++++|+.+|+++++. +++
T Consensus 99 ~~~~~a~~~~--~~--~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~ 146 (273)
T 1ouv_A 99 QYYSKACDLK--YA--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----------------------------NDG 146 (273)
T ss_dssp HHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------------------------TCH
T ss_pred HHHHHHHHcC--Cc--cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----------------------------CcH
Confidence 9999999984 44 677889999999 99999999999999976 356
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccCC-----
Q 009850 177 RLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVADG----- 242 (524)
Q Consensus 177 ~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~----- 242 (524)
.+++++|.+|.. .+++++|+.+|+++++.+ ++. ++++|.+|.. .+++++|+.+|+++....+..
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 224 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 788888888888 888888888888888763 445 8888888888 888888888888875443211
Q ss_pred ----------CcCHHHHHHHHHHHHHhCCCCH
Q 009850 243 ----------PRGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 243 ----------~~~~~~A~~~~~~al~~~p~~~ 264 (524)
.++.++|+..|+++++..|..+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 2445566666667777766544
No 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.72 E-value=1.9e-16 Score=156.27 Aligned_cols=169 Identities=12% Similarity=0.011 Sum_probs=158.8
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc
Q 009850 75 AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG 154 (524)
Q Consensus 75 ~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~ 154 (524)
..|++.+.++.+|..+...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|++++..
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~--------- 180 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQ--------- 180 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGG---------
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchh---------
Confidence 3599999999999999999999999999999999999997 78899999999999999999999999887
Q ss_pred ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 155 KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
+|+....+...+..+...++.++|+..|++++..+|++.. ++++|.++...|++++|+..|+
T Consensus 181 -----------------~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 181 -----------------DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp -----------------GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7877778888888899999999999999999999999999 9999999999999999999999
Q ss_pred HhcccccCCCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 234 RVKPAVADGPRGVDSHLKAYERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 234 ~a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
+++..+|++ ..++.++|.++...|+.++|+..|++++.
T Consensus 244 ---------------------~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 244 ---------------------GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------------HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------------HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 788888988 88999999999999999999999998764
No 82
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=1.6e-16 Score=171.96 Aligned_cols=156 Identities=15% Similarity=0.030 Sum_probs=129.2
Q ss_pred cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHH
Q 009850 59 DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIAL 138 (524)
Q Consensus 59 ~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~ 138 (524)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++. .++..+|.+|...|++++|+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999997 7889999999999999999999
Q ss_pred HHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHH
Q 009850 139 LKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGI 217 (524)
Q Consensus 139 ~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~ 217 (524)
|++++++ +|++..+++++|.++...|++++|+.+|+++++++|++.. +.++|.
T Consensus 80 ~~~al~~--------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDA--------------------------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhc--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999 8999999999999999999999999999999999999999 999999
Q ss_pred HHHHc---CCHHHHHHHHHHhcccccCC
Q 009850 218 CLMKQ---GRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 218 ~~~~~---G~~~eA~~~~~~a~~~~~~~ 242 (524)
++..+ |++++|+..|++++...+..
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999 99999999999655544443
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=4e-17 Score=148.68 Aligned_cols=166 Identities=15% Similarity=0.042 Sum_probs=144.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
|...+.++.+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++++..
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~----------- 69 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG--DVKLAKADCLLETKQFELAQELLATIPLE----------- 69 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----------
Confidence 44456688999999999999999999999999999997 78899999999999999999999999887
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALM-QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~-~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
+| ++..+..++.+.. ..+...+|+..|+++++.+|+++. ++++|.++...|++++|+..|+
T Consensus 70 ---------------~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~- 132 (176)
T 2r5s_A 70 ---------------YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW- 132 (176)
T ss_dssp ---------------GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred ---------------cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH-
Confidence 78 7777666665533 334455689999999999999999 9999999999999999999999
Q ss_pred hcccccCCCcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHhhccc
Q 009850 235 VKPAVADGPRGVDSHLKAYERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 235 a~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eAi~~~~~al~ 292 (524)
+++...|+. ..++.++|.++..+|+.++|+..|++++.
T Consensus 133 --------------------~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 --------------------NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp --------------------HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred --------------------HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 677778765 56999999999999999999999998763
No 84
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=2.4e-16 Score=135.74 Aligned_cols=118 Identities=8% Similarity=-0.060 Sum_probs=111.9
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
..|...+.|..+|..++..|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+..|+++++++|+++ .++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHH
Confidence 44666778999999999999999999999999999999999999999999999999999999999999999997 7889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
.+|.+|..+|++++|+..|++++++ +|++..++.+++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l--------------------------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV--------------------------DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--------------------------CcCCHHHHHHHHHhc
Confidence 9999999999999999999999999 999999999999874
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.69 E-value=4.9e-17 Score=144.91 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009850 64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL 143 (524)
Q Consensus 64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al 143 (524)
.+-..|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++ .++..+|.+|...|++++|+.+|++++
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 344567778888999999999999999999999999999999999999997 788899999999999999999999999
Q ss_pred HHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850 144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN 210 (524)
Q Consensus 144 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 210 (524)
++ +|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 98 ~l--------------------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 AL--------------------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HH--------------------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hh--------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99 899999999999999999999999999999999999875
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.68 E-value=4.9e-16 Score=149.93 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=155.4
Q ss_pred CCccchhhhhhhHHHHh--cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHc
Q 009850 24 KPLGVSRTRSDSFHAIH--KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQ 93 (524)
Q Consensus 24 ~~~~~l~~~~~~~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~ 93 (524)
......+.+...+.... ..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...
T Consensus 19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 33334444555444443 22455678999999999999999999999999987 466778899999999999
Q ss_pred CCHHHHHHHHHHHHHhC-----CCc-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHH
Q 009850 94 NRAEEAIEAIKSLRSRC-----SDQ-AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKF 167 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~-----p~~-~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~ 167 (524)
|++++|+.+|++++... +++ ....++..+|.+|...|++++|+.+|++++.+.....
T Consensus 99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------- 161 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL----------------- 161 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS-----------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----------------
Confidence 99999999999999983 322 2247888999999999999999999999998721000
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------------------------------
Q 009850 168 QVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA----------------------------------------- 206 (524)
Q Consensus 168 ~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----------------------------------------- 206 (524)
....|....++.++|.++...|++++|+.+|++++.+.
T Consensus 162 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 3edt_B 162 -GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240 (283)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----------
T ss_pred -CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 00034457799999999999999999999999999862
Q ss_pred --------CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 207 --------PDNNK-MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 207 --------P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
|.... +..+|.+|..+|++++|+.+|++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22233 78899999999999999999997643
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.67 E-value=9.7e-15 Score=148.46 Aligned_cols=231 Identities=12% Similarity=0.038 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--H--HHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ--A--QES 117 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~--~--~~~ 117 (524)
..+..+|.+++..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.+.. . ...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567889999999999999999999999876543 267889999999999999999999999886632 2 134
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
....+|.++...|++++|+..|++++.+...... ...|....++.++|.++...|++++|+.
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL------------------EQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------------TTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc------------------ccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5678899999999999999999999987321000 0013345677888999999999999999
Q ss_pred HHHHHHhhCCCc-----HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--------------------CcCHHHHHH
Q 009850 198 AYRRALSIAPDN-----NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--------------------PRGVDSHLK 251 (524)
Q Consensus 198 ~~~~Al~l~P~~-----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--------------------~~~~~~A~~ 251 (524)
++++++.+.+.. .. +.++|.++...|++++|..+++++....... .++.++|..
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 236 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999998887652 23 7788889999999999998888764321110 134444555
Q ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCC
Q 009850 252 AYERAQQMLKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 252 ~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P 295 (524)
.+++++...+.. ...+..+|.++...|++++|+..++.++...+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 555555444332 22455666677777777777776666655433
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=6.7e-15 Score=124.93 Aligned_cols=135 Identities=24% Similarity=0.275 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
.+|+.+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.++++++...|.+. ..+..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999886 6678889999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
...|++++|+..+++++.. .|.+..++..+|.++...|++++|+.+|++++..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL--------------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999888 78888899999999999999999999999999988
Q ss_pred CCc
Q 009850 207 PDN 209 (524)
Q Consensus 207 P~~ 209 (524)
|++
T Consensus 134 ~~~ 136 (136)
T 2fo7_A 134 PRS 136 (136)
T ss_dssp TTC
T ss_pred CCC
Confidence 863
No 89
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=8.3e-14 Score=147.60 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=87.0
Q ss_pred CCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc-----CCHHHHHHHHHHhcccccC
Q 009850 172 EQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ-----GRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~-----G~~~eA~~~~~~a~~~~~~ 241 (524)
+.+++.+++++|.+|.. .+++++|+.+|+++++. .++. ++++|.+|... +++++|+.+|+++......
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~ 328 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA 328 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence 45667777777777777 77788888888877754 4455 77788888777 7888888888876433211
Q ss_pred C--------------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCC
Q 009850 242 G--------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 242 ~--------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~ 294 (524)
. ..+.++|+..|+++.+. .++.+++++|.+|.. .+++++|+..|+++.+..
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1 12567788888888876 667888888888888 788888888888887754
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=1.5e-15 Score=164.15 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=132.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC
Q 009850 93 QNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE 172 (524)
Q Consensus 93 ~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~ 172 (524)
.|++++|+..|+++++.+|++. .++..+|.+|...|++++|+..|++++++ +
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~ 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF--VAWLMLADAELGMGDTTAGEMAVQRGLAL--------------------------H 53 (568)
T ss_dssp -------------------CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------------------------S
T ss_pred CccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------C
Confidence 4789999999999999999987 78899999999999999999999999998 8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~ 251 (524)
|++..+++++|.+|...|++++|+.+|+++++++|++.. ++++|.++..+|++++|+..|+
T Consensus 54 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------ 115 (568)
T 2vsy_A 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT------------------ 115 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------------------
Confidence 999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHhhcccCCCCCCC
Q 009850 252 AYERAQQMLKDLESEMMNKGGDRVEQ---SRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 252 ~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~eAi~~~~~al~~~P~~~~ 299 (524)
++++..|++..++.++|.++..+ |++++|+..|+++++.+|....
T Consensus 116 ---~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 116 ---RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp ---HHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred ---HHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 78888999999999999999999 9999999999999999988654
No 91
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=5.6e-14 Score=148.92 Aligned_cols=239 Identities=11% Similarity=0.021 Sum_probs=170.2
Q ss_pred CCChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 009850 43 PVGDTPYVRAKNVQLV----DKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQ----QNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~eAi~~~~~al~~~p~~~ 114 (524)
..++++++.+|.++.. .+++++|+.+|+++++. +++.+++.||.+|.. .+++++|+.+|+++.... ++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH
Confidence 4577899999999999 99999999999999986 678999999999999 999999999999998864 44
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhh------ccHhhh-----cccHHHHHHHhHHHHHhcCCCcHHHH
Q 009850 115 QESLDNILLDLYKR----CGRLDDQIALLKHKLYLIQ------QGLAFN-----GKRTKTARSQGKKFQVSVEQEATRLL 179 (524)
Q Consensus 115 ~~~l~~~lg~~~~~----~g~~~eA~~~~~~al~l~~------~~~~~~-----~~~~~~a~~~~~~~~~~~~p~~~~a~ 179 (524)
..++.+|.+|.. .+++++|+.+|+++..... .+..+. .+..+.+....+. ..+.+++.++
T Consensus 112 --~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~---a~~~~~~~a~ 186 (490)
T 2xm6_A 112 --QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK---AAEQGNVWSC 186 (490)
T ss_dssp --HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH---HHHTTCHHHH
T ss_pred --HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH---HHHCCCHHHH
Confidence 566788999998 8999999999999987531 111121 1122222222221 1134567777
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHhcccccC---------
Q 009850 180 GNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRVKPAVAD--------- 241 (524)
Q Consensus 180 ~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~--------- 241 (524)
+++|.+|.. .+++++|+.+|+++++. .++. ++++|.+|.. .+++++|+.+|+++......
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777 67777777777777764 2344 6777777776 67777777777776332110
Q ss_pred ------CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHhhcccCC
Q 009850 242 ------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ-----SRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 242 ------~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-----g~~~eAi~~~~~al~~~ 294 (524)
..++.++|+..|+++.+. .++.+++.+|.+|... +++++|+..|+++.+..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 125566677777776654 5566777777777776 67777777777776653
No 92
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=5.6e-15 Score=158.23 Aligned_cols=214 Identities=7% Similarity=-0.088 Sum_probs=185.2
Q ss_pred HHHhcCCCChHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLV-------DKDPE-------KAIPLFWAAIN-AGDRVDSALKDMAIVMKQQNRAEEAIE 101 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~-------~g~~~-------~Ai~~~~~al~-~~p~~~~a~~~La~~~~~~g~~~eAi~ 101 (524)
.++...|..++.|+.+|..+.. .|+++ +|+..|++++. ..|++...|..+|.++...|++++|..
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 4556679999999999999886 79987 99999999997 799999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHH
Q 009850 102 AIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGN 181 (524)
Q Consensus 102 ~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~ 181 (524)
.|++++...|.++. .+|..++.++.+.|++++|+..|+++++. .|.....+..
T Consensus 343 ~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------------------------~~~~~~~~~~ 395 (530)
T 2ooe_A 343 IYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED--------------------------ARTRHHVYVT 395 (530)
T ss_dssp HHHHHHHSSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------TTCCTHHHHH
T ss_pred HHHHHhCccccCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------------------cCCchHHHHH
Confidence 99999999998742 47888899999999999999999999987 5666666666
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850 182 LGWA-LMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM 259 (524)
Q Consensus 182 Lg~~-~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 259 (524)
.+.+ +...|++++|...|+++++..|+++. |.+++..+...|+.++|...|+ +++..
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~---------------------~al~~ 454 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE---------------------RVLTS 454 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH---------------------HHHHS
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH---------------------HHHhc
Confidence 6655 34689999999999999999999999 9999999999999999999999 45555
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCC
Q 009850 260 LKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 298 (524)
Q Consensus 260 ~p~~----~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~ 298 (524)
.|.. ...|..........|+.+.+...+.++.+..|.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 4433 34777777788889999999999999998888543
No 93
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.7e-16 Score=154.64 Aligned_cols=201 Identities=9% Similarity=-0.013 Sum_probs=173.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCcH-------
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDM-------AIVMKQQNRAEEAIEAIKSLRSRCSDQA------- 114 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~L-------a~~~~~~g~~~eAi~~~~~al~~~p~~~------- 114 (524)
+|..|.-+ ..+++..|...|.+++..+|+..++|.++ +.++..++++.+++..+++.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 56666665 68999999999999999999999999999 8999999999999999999999887431
Q ss_pred ------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850 115 ------------QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182 (524)
Q Consensus 115 ------------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L 182 (524)
...+...++.++...|+|++|.+.|..++.. .|++. +++.+
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------------------------~p~~~-~~~~~ 141 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------------------------GSEHL-VAWMK 141 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------------------------TCHHH-HHHHH
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------------CCchH-HHHHH
Confidence 1245667888899999999999999988766 78888 99999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCc--HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHh
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM 259 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~--~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~ 259 (524)
|.++++.++|++|+.+|+.++...+.. .. ++++|.++..+|++++|+.+|+++ ...
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a---------------------~~g 200 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA---------------------NDS 200 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HTS
T ss_pred HHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------hcC
Confidence 999999999999999999887753221 22 899999999999999999999954 322
Q ss_pred C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 260 L--KD-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 260 ~--p~-~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
. |. ...+++++|.++..+|+.++|+..|++++..+|. ..
T Consensus 201 ~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 201 PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 2 44 5679999999999999999999999999999998 44
No 94
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=2.4e-17 Score=166.65 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=156.9
Q ss_pred cCChHHHHHHHHH----HHHcCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 59 DKDPEKAIPLFWA----AINAGDRVDSALKDMAIVMK------------QQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 59 ~g~~~~Ai~~~~~----al~~~p~~~~a~~~La~~~~------------~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
.+.+++|+..+.. ++.+.|+. +|..+|.... .++++++|+..|++++...|..+ ..+..+
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a--~~~~~~ 153 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS--TIVKER 153 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHH--HHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHH--HHHHHH
Confidence 4567888888888 78888876 5555654442 45677888888888888777766 677888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
|.+|...|++++|+..|++++.+.+....+.. +. .....|....+++++|.+|...|+|++|+.+|+++
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~--------~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---EE--------AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---HH--------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCCh---HH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999988221100000 00 00001112689999999999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF 281 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 281 (524)
++++|++.. ++++|.+|..+|++++|+.+|+ +++++.|++..++.++|.++..+|++.
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~---------------------~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQ---------------------KVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH---------------------HHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999 889999999999999999999999999
Q ss_pred HHHH-HHhhccc
Q 009850 282 DAFL-GSSSIWQ 292 (524)
Q Consensus 282 eAi~-~~~~al~ 292 (524)
+|.. .|+.++.
T Consensus 282 ~a~~~~~~~~~~ 293 (336)
T 1p5q_A 282 AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 9944 5666653
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=6.7e-16 Score=137.49 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH
Q 009850 99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL 178 (524)
Q Consensus 99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a 178 (524)
+-..+++++.++|++. ..++.+|.++...|++++|+..|++++.+ +|+++.+
T Consensus 21 ~~~~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------------------------~P~~~~~ 72 (151)
T 3gyz_A 21 SGATLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------------------------DFYNVDY 72 (151)
T ss_dssp TSCCTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHH
T ss_pred CCCCHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHH
Confidence 3355677788889887 78889999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
|+++|.++...|+|++|+.+|+++++++|+++. |+++|.||..+|++++|+.+|++++...
T Consensus 73 ~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999 9999999999999999999999554433
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.64 E-value=1.1e-15 Score=135.38 Aligned_cols=120 Identities=14% Similarity=0.010 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009850 64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL 143 (524)
Q Consensus 64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al 143 (524)
.+...|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.+|...|++++|+.+|++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344568889999999999999999999999999999999999999999987 677889999999999999999999999
Q ss_pred HHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 144 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.+ +|+++.+++++|.+|...|++++|+.+|+++++++|+++.
T Consensus 83 ~l--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 83 VM--------------------------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HH--------------------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred hc--------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 98 8999999999999999999999999999999999988766
No 97
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.64 E-value=5.1e-15 Score=145.63 Aligned_cols=191 Identities=13% Similarity=0.081 Sum_probs=155.2
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNIL 122 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~l 122 (524)
|.....++.+|..++..|++++|+..|++++..+|++..++.++|.+|..+|++++|+..|+++++++|++. .+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999999999997 788899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH-----HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA-----RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a-----~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
|.+|...|++++|+..|++++++.+............. ............|.+..+...++.++ .|++++|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 99999999999999999999998764321111110000 01111122334677777777777765 699999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHc-CCHHHHHHHHHHhcc
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQ-GRIGEAKETLRRVKP 237 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~-G~~~eA~~~~~~a~~ 237 (524)
.|+++++.+|++.. ...++..+.+. +++++|...|.++..
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999887 66677777666 778999999998754
No 98
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=6.1e-15 Score=144.60 Aligned_cols=178 Identities=20% Similarity=0.186 Sum_probs=147.6
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA--------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC--- 110 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~--- 110 (524)
.+.....+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3455668899999999999999999999999987 46677889999999999999999999999999884
Q ss_pred --CCc-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 111 --SDQ-AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 111 --p~~-~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
++. ....++..+|.++...|++++|+.+|++++.+..... ....|....++..+|.++.
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL------------------GPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS------------------CTTCHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHH
Confidence 322 2246788999999999999999999999998721100 0003445778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC-------------------------------------------------CCcHH-HHHHHH
Q 009850 188 QQNNYIEAEDAYRRALSIA-------------------------------------------------PDNNK-MCNLGI 217 (524)
Q Consensus 188 ~~g~~~eAi~~~~~Al~l~-------------------------------------------------P~~~~-~~~Lg~ 217 (524)
..|++++|+.+|++++... |.... +.++|.
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 9999999999999999853 33444 889999
Q ss_pred HHHHcCCHHHHHHHHHHhcc
Q 009850 218 CLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 218 ~~~~~G~~~eA~~~~~~a~~ 237 (524)
+|..+|++++|+.+|++++.
T Consensus 287 ~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999996543
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.62 E-value=5.2e-14 Score=139.76 Aligned_cols=189 Identities=10% Similarity=-0.024 Sum_probs=168.2
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHc
Q 009850 57 LVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQN--RAEEAIEAIKSLRSRCSDQAQESLDNILLDLY----KRC 129 (524)
Q Consensus 57 ~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g--~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~----~~~ 129 (524)
...|.+ ++|+.++.++|.++|++..+|+.++.++..+| ++++++..+..++..+|++. .+|+..+.++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHHhc
Confidence 445555 69999999999999999999999999999999 99999999999999999986 6777777777 666
Q ss_pred ---CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHh
Q 009850 130 ---GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI--EAEDAYRRALS 204 (524)
Q Consensus 130 ---g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~--eAi~~~~~Al~ 204 (524)
+++++++.++.++++. +|.+..+|+..++++...|+++ ++++++.++++
T Consensus 121 ~~~~~~~~EL~~~~~~l~~--------------------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSS--------------------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 8999999999999999 9999999999999999999999 99999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCC------HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009850 205 IAPDNNK-MCNLGICLMKQGR------IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ 277 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~------~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 277 (524)
.+|.+.. |++++.++...|+ +++++.++. +++..+|++..+|+.++.++...
T Consensus 175 ~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~---------------------~aI~~~p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 175 TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK---------------------DKIVKCPQNPSTWNYLLGIHERF 233 (306)
T ss_dssp HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH---------------------HHHHHCSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH---------------------HHHHhCCCCccHHHHHHHHHHhc
Confidence 9999999 9999999998886 555555555 89999999999999999999999
Q ss_pred CCHHHHH-HHHhhcccCC
Q 009850 278 SRLFDAF-LGSSSIWQPQ 294 (524)
Q Consensus 278 g~~~eAi-~~~~~al~~~ 294 (524)
|+..+++ ....+++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 234 DRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp TCCGGGGHHHHHTTEEGG
T ss_pred CCChHHHHHHHHHHHhcc
Confidence 9966654 4666676654
No 100
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=5.1e-14 Score=143.09 Aligned_cols=228 Identities=13% Similarity=0.021 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD------QAQ 115 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~------~~~ 115 (524)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+. ...
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 57889999999999999999999999875432 234788999999999999999999999987631 122
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
..++..+|.++...|++++|+.++++++.+.+... .+....++.++|.++...|++++|
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---------------------PQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---------------------GGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---------------------cHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35667899999999999999999999998732100 112356888999999999999999
Q ss_pred HHHHHHHHhhCCC--c-HHHH-----HHHHHHHHcCCHHHHHHHHHHhcccccCCC-----------------cCHHHHH
Q 009850 196 EDAYRRALSIAPD--N-NKMC-----NLGICLMKQGRIGEAKETLRRVKPAVADGP-----------------RGVDSHL 250 (524)
Q Consensus 196 i~~~~~Al~l~P~--~-~~~~-----~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~-----------------~~~~~A~ 250 (524)
+.++++++.+.+. . ..+. .++.++...|++++|...++++....+... ++.++|.
T Consensus 194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999887432 2 2221 345568899999999999999866544321 6677888
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 251 KAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 251 ~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
..+++++...+. ...++..+|.++...|++++|...++.++...+.
T Consensus 274 ~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 274 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 888888776543 2357888999999999999999999999877554
No 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.62 E-value=7.9e-16 Score=155.53 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=140.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------------HHHHHHHHHH
Q 009850 58 VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-------------QESLDNILLD 124 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-------------~~~l~~~lg~ 124 (524)
..+++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.+.|.+. ...++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999872 1268889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+|...|++++|+.+|++++++ +|+++.+++++|.+|..+|++++|+.+|+++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL--------------------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHH-HHHHHh
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAK-ETLRRV 235 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~-~~~~~a 235 (524)
++|++.. +.++|.++..+|++++|. ..|+++
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999994 456643
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=6.1e-15 Score=146.78 Aligned_cols=178 Identities=12% Similarity=0.105 Sum_probs=141.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
...|.+|...|++++|+.+|.+++.+.+.. ....++..+|.+|...|++++|+.+|++++.+....
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~---------- 109 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---------- 109 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc----------
Confidence 344788999999999999999999987532 224677889999999999999999999999883110
Q ss_pred HHHHhHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHH
Q 009850 160 ARSQGKKFQVSVEQ-EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKET 231 (524)
Q Consensus 160 a~~~~~~~~~~~~p-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~ 231 (524)
.++ ....++.++|.+|.. |++++|+.+|++++.+.|.. .. +.++|.+|..+|++++|+.+
T Consensus 110 -----------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 177 (307)
T 2ifu_A 110 -----------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAAS 177 (307)
T ss_dssp -----------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 011 125688999999999 99999999999999987653 23 88999999999999999999
Q ss_pred HHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCC
Q 009850 232 LRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 232 ~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
|++++...+.... .+....++.++|.++..+|++.+|+..|++++ .+|....
T Consensus 178 ~~~al~~~~~~~~---------------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 178 LQKEKSMYKEMEN---------------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHcCC---------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9965432211110 01123478899999999999999999999999 9887654
No 103
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=1.8e-14 Score=154.21 Aligned_cols=188 Identities=7% Similarity=-0.045 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHH
Q 009850 63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQ-------QNRAE-------EAIEAIKSLRS-RCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~-------~g~~~-------eAi~~~~~al~-~~p~~~~~~l~~~lg~~~~ 127 (524)
.+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++++. ..|++. .++..++.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~--~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 488899999999999999999999999987 79987 99999999997 799887 78899999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-RLLGNLGWALMQQNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 206 (524)
..|++++|...|++++++ .|.++ .+|..+|.++.+.|++++|+..|++|++..
T Consensus 333 ~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--------------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--------------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hcCCHHHHHHHHHHHhCc--------------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 999999999999999988 78875 699999999999999999999999999998
Q ss_pred CCcHH-HHHHHHH-HHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009850 207 PDNNK-MCNLGIC-LMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 284 (524)
Q Consensus 207 P~~~~-~~~Lg~~-~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi 284 (524)
|.... +...+.+ +...|++++|...|+ ++++..|+++.+|..++..+...|+.++|+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e---------------------~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFE---------------------LGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHH---------------------HHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 87766 5555544 456899999999998 778888999999999999999999999999
Q ss_pred HHHhhcccCCCCCCC
Q 009850 285 LGSSSIWQPQPCKDH 299 (524)
Q Consensus 285 ~~~~~al~~~P~~~~ 299 (524)
..|++++...|.++.
T Consensus 446 ~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 446 VLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHSCCSCGG
T ss_pred HHHHHHHhccCCCHH
Confidence 999999998876654
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=2.5e-15 Score=131.72 Aligned_cols=124 Identities=10% Similarity=-0.014 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 67 PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 67 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ .++..+|.+|...|++++|+.+|++++.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALM- 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 567788888999999999999999999999999999999999999887 67788999999999999999999999998
Q ss_pred hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH
Q 009850 147 QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC 218 (524)
Q Consensus 147 ~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~ 218 (524)
+|+++.+++++|.++...|++++|+.+|++++.++|+++. +.....+
T Consensus 82 -------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 82 -------------------------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp -------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred -------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8999999999999999999999999999999999998876 4333333
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=1.9e-14 Score=135.36 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcC----ChHHHHHHH
Q 009850 64 KAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCG----RLDDQIALL 139 (524)
Q Consensus 64 ~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g----~~~eA~~~~ 139 (524)
+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+.. ++ ..++.+|.+|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~--~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DG--DALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CH--HHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH--HHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466667666654 566777777777777777777777777776642 33 455666666665 5 677777777
Q ss_pred HHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--cHH-H
Q 009850 140 KHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPD--NNK-M 212 (524)
Q Consensus 140 ~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~--~~~-~ 212 (524)
+++.+ ++++.++++||.+|.. .+++++|+.+|+++++..+. ++. +
T Consensus 77 ~~A~~----------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~ 128 (212)
T 3rjv_A 77 EKAVE----------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ 128 (212)
T ss_dssp HHHHH----------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH
T ss_pred HHHHH----------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH
Confidence 77643 4566677777777766 66777777777777776663 344 6
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHH
Q 009850 213 CNLGICLMK----QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ-S-----RLFD 282 (524)
Q Consensus 213 ~~Lg~~~~~----~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g-----~~~e 282 (524)
++||.+|.. .+++++|+.+|+ ++... +.++.+++++|.+|... | ++++
T Consensus 129 ~~Lg~~y~~g~g~~~d~~~A~~~~~---------------------~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~ 186 (212)
T 3rjv_A 129 MLLGLIYASGVHGPEDDVKASEYFK---------------------GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQK 186 (212)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHH---------------------HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHH---------------------HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 777777777 666777766666 44444 44555677777777654 2 6777
Q ss_pred HHHHHhhcccC
Q 009850 283 AFLGSSSIWQP 293 (524)
Q Consensus 283 Ai~~~~~al~~ 293 (524)
|+..|+++.+.
T Consensus 187 A~~~~~~A~~~ 197 (212)
T 3rjv_A 187 ALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 106
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.61 E-value=7.6e-14 Score=139.59 Aligned_cols=206 Identities=9% Similarity=-0.065 Sum_probs=173.9
Q ss_pred HHcCChH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 57 LVDKDPE-KAIPLFWAAINAGDRVDSALKDMAIVMKQQNR----------AEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 57 ~~~g~~~-~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|.+. +|+.++.+++..+|++..+|+..+.++..+|. +++++.++..++..+|.+. .+|+..+.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny--~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence 4677776 89999999999999999999999999998876 7899999999999999997 788888999
Q ss_pred HHHcCC--hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 009850 126 YKRCGR--LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN-YIEAEDAYRRA 202 (524)
Q Consensus 126 ~~~~g~--~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~A 202 (524)
+...|+ +++++.++.++++. +|.+..+|...++++...|. ++++++++.++
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~--------------------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA--------------------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 999994 89999999999999 99999999999999999999 69999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ---- 277 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---- 277 (524)
++.+|.+.. |++++.++..++....+- .......+.++++++.+.+++...|++..+|+.+..++...
T Consensus 172 I~~~p~N~SAW~~R~~ll~~l~~~~~~~-------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 172 ITRNFSNYSSWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHCSCCHHHHHHHHHHHHHHSCCC-------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHCCCCHHHHHHHHHHHHHhhhccccc-------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 999999999 999999998874321110 00001113345667777799999999999998666665555
Q ss_pred -------CCHHHHHHHHhhcccCCCCC
Q 009850 278 -------SRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 278 -------g~~~eAi~~~~~al~~~P~~ 297 (524)
+.+++++..+..++..+|++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 45799999999999999976
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.60 E-value=3.3e-14 Score=132.35 Aligned_cols=148 Identities=17% Similarity=0.097 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+.+|++++..+|+++ .++..+|.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHH
Confidence 47899999999999999999999995 44 688999999999999999999999999999999987 78889999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
..|++++|+..|++++++.+....... ........|....+++++|.++...|++++|+.+|+++++++|
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999987322110000 0000011344569999999999999999999999999999999
Q ss_pred CcH
Q 009850 208 DNN 210 (524)
Q Consensus 208 ~~~ 210 (524)
++.
T Consensus 153 ~~~ 155 (213)
T 1hh8_A 153 EPR 155 (213)
T ss_dssp SGG
T ss_pred ccc
Confidence 873
No 108
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.8e-14 Score=147.44 Aligned_cols=170 Identities=9% Similarity=-0.032 Sum_probs=143.6
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ---- 113 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~---- 113 (524)
...+|+.+|.++...|++++|+.++.+++.+.+ ....++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 346899999999999999999999999999733 335689999999999999999999999999886522
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Q 009850 114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVE-QEATRLLGNLGWALMQQNNY 192 (524)
Q Consensus 114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~-p~~~~a~~~Lg~~~~~~g~~ 192 (524)
....++..+|.+|...|++++|+.+|++++.+... ..+ |..+.++.++|.++...|++
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE---------------------SNILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------TTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------hccchhHHHHHHHHHHHHHHCCCH
Confidence 22457789999999999999999999999986211 114 67788999999999999999
Q ss_pred HHHHHHHHHHHhhCC-----CcHH-HHHHHHHHHHcCC---HHHHHHHHHHh
Q 009850 193 IEAEDAYRRALSIAP-----DNNK-MCNLGICLMKQGR---IGEAKETLRRV 235 (524)
Q Consensus 193 ~eAi~~~~~Al~l~P-----~~~~-~~~Lg~~~~~~G~---~~eA~~~~~~a 235 (524)
++|+.+|++++.+.+ .... +..+|.++...|+ +.+|+..+++.
T Consensus 281 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 281 DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 999999999999843 2233 6779999999999 88888888876
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.60 E-value=1.4e-14 Score=144.17 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH--HHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDR------VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--QA--QES 117 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~------~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~~--~~~ 117 (524)
.|...|.++...|++++|+.+|.+++.+.+. ...++..+|.+|..+|++++|+.+|++++.+.+. +. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4667789999999999999999999987542 2567899999999999999999999999998642 22 246
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
++..+|.+|.. |++++|+.+|++++.+.+..- .......++.++|.+|..+|+|++|+.
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--------------------RLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--------------------ChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77889999988 999999999999998832100 001125689999999999999999999
Q ss_pred HHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 198 AYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 198 ~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
+|++++.+.|++ .. +.++|.++..+|++++|+.+|++++ ..|.
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 999999986543 22 7789999999999999999999766 4443
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.59 E-value=7.6e-14 Score=118.32 Aligned_cols=130 Identities=27% Similarity=0.302 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
.+++.+|.++...|++++|+..+++++...|.+. ..+..++.++...|++++|+..|++++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 64 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------------- 64 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 5688999999999999999999999999999886 67788999999999999999999999988
Q ss_pred HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 009850 161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~ 238 (524)
.|.+..+++.+|.++...|++++|+..|++++...|.+.. ++.+|.++...|++++|+..|+++...
T Consensus 65 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 65 -----------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -----------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8889999999999999999999999999999999999988 999999999999999999999965443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=5.5e-15 Score=159.61 Aligned_cols=206 Identities=9% Similarity=-0.111 Sum_probs=176.8
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 57 LVDKDP-EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR----------AEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 57 ~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~----------~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|++ ++|+..+.+++..+|++..+|+.++.++..+|+ +++++..+.+++..+|++. .+|+..+.+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence 455555 688999999999999999999999999999998 9999999999999999997 788888999
Q ss_pred HHHcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 009850 126 YKRCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-NYIEAEDAYRRA 202 (524)
Q Consensus 126 ~~~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-~~~eAi~~~~~A 202 (524)
+...| ++++++.++.+++++ +|.+..+|...|+++...| .++++++++.++
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~--------------------------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEA--------------------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred HHHcccccHHHHHHHHHHHHhh--------------------------ccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 99999 679999999999999 9999999999999999999 999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF 281 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 281 (524)
++.+|.+.. |++++.++..+++..++. .......+.++++++.+.+++..+|++..+|+.++.++...++++
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~-------~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSG-------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSS-------SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHCCCCccHHHHHHHHHHhhccccccc-------ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 999999999 999999998874431110 000001133456677777999999999999999999999999877
Q ss_pred H------------HHHHHhhcccCCCCC
Q 009850 282 D------------AFLGSSSIWQPQPCK 297 (524)
Q Consensus 282 e------------Ai~~~~~al~~~P~~ 297 (524)
+ |+.+|.+++..+|..
T Consensus 244 ~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 244 VLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ceeeeeeccCCceEEEEeccceeccccc
Confidence 6 666788888888764
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=9e-14 Score=123.39 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.|+.+|..++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|.++ .++..+|.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 4555566666666666666666666666665555555666666666666666666655555555554 44455555555
Q ss_pred HcCChHHHHHHHHHHHHH
Q 009850 128 RCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l 145 (524)
..|++++|+.+|++++.+
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555555555
No 113
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.57 E-value=4.5e-13 Score=133.97 Aligned_cols=224 Identities=8% Similarity=-0.028 Sum_probs=181.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKD----------PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNR--AEEAIEAIK 104 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~--~~eAi~~~~ 104 (524)
.++...|....+|+..+.+....|+ +++++.++..++..+|.+..+|+..+.++..+|+ +++++.++.
T Consensus 55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 134 (331)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 4667789999999999999887776 7899999999999999999999999999999994 999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850 105 SLRSRCSDQAQESLDNILLDLYKRCGR-LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG 183 (524)
Q Consensus 105 ~al~~~p~~~~~~l~~~lg~~~~~~g~-~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg 183 (524)
+++..+|.+. .+|...+.++...|. ++++++++.++++. +|.+..+|+.++
T Consensus 135 k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--------------------------~p~N~SAW~~R~ 186 (331)
T 3dss_A 135 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITR--------------------------NFSNYSSWHYRS 186 (331)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------------------------CSCCHHHHHHHH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHH
Confidence 9999999997 677888888889998 59999999999999 999999999999
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCcHH-HHH-HHHHHHHcCCHHHHHHHHHHhcccccCCCcCHH
Q 009850 184 WALMQQ--------------NNYIEAEDAYRRALSIAPDNNK-MCN-LGICLMKQGRIGEAKETLRRVKPAVADGPRGVD 247 (524)
Q Consensus 184 ~~~~~~--------------g~~~eAi~~~~~Al~l~P~~~~-~~~-Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~ 247 (524)
.++... +.++++++++.+++..+|++.. |+. .+.+....|...-.... .+.++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~-----------~~~l~ 255 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEK-----------STVLQ 255 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHH-----------HHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHH-----------HHHHH
Confidence 999987 5699999999999999999999 754 45444444421100000 02345
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHhhcccCCCCCCC
Q 009850 248 SHLKAYERAQQMLKDLESEMMNKGGDRV---EQSRLFDAFLGSSSIWQPQPCKDH 299 (524)
Q Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~eAi~~~~~al~~~P~~~~ 299 (524)
++++.+.+++++.|++...+..++.+.. ..|..++....+.++.+++|....
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 6677777999999998655544443322 357778888899999999886544
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=1.3e-14 Score=128.47 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHH
Q 009850 99 AIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRL 178 (524)
Q Consensus 99 Ai~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a 178 (524)
+-..|++++.++|++. ..++.+|.++...|++++|+..|++++.+ +|+++.+
T Consensus 6 ~~~~~~~al~~~p~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~ 57 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTL--EQLYSLAFNQYQSGXYEDAHXVFQALCVL--------------------------DHYDSRF 57 (148)
T ss_dssp CCCSHHHHTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHH
T ss_pred hhhhHHHHHcCCHhhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------------CcccHHH
Confidence 3456888999999886 67788999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
|+++|.++...|++++|+.+|++++.++|+++. ++++|.++..+|++++|+.+|++++...|+
T Consensus 58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999 999999999999999999999965444443
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.2e-14 Score=119.14 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLY 126 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~ 126 (524)
..|+.+|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++.++|+++ ..+..+|.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555544 3444555555
Q ss_pred HHcCChHHHHHHHHHHHHH
Q 009850 127 KRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l 145 (524)
...|++++|+..|++++++
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 5555555555555555554
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=2.2e-13 Score=128.01 Aligned_cols=158 Identities=14% Similarity=0.045 Sum_probs=139.6
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN----RAEEAIEAIKSLRSRCSDQAQESLD 119 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g----~~~eAi~~~~~al~~~p~~~~~~l~ 119 (524)
..+.+++.+|.++...+++++|+.+|+++++. +++.+++.||.+|.. + ++++|+.+|+++... .++ ...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~--~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK--SGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH--HHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH--HHH
Confidence 57789999999999999999999999999875 678999999999998 7 999999999999664 454 567
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC--CcHHHHHHHHHHHHH----c
Q 009850 120 NILLDLYKR----CGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ--EATRLLGNLGWALMQ----Q 189 (524)
Q Consensus 120 ~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p--~~~~a~~~Lg~~~~~----~ 189 (524)
+.+|.+|.. .+++++|+.+|+++++. .+ +++.++++||.+|.. .
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------------------------~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARD--------------------------SESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------------------------TTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------------------------CCCcchHHHHHHHHHHHHcCCCCC
Confidence 889999987 88999999999999877 44 348999999999999 8
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc-C-----CHHHHHHHHHHh
Q 009850 190 NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ-G-----RIGEAKETLRRV 235 (524)
Q Consensus 190 g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~-G-----~~~eA~~~~~~a 235 (524)
+++++|+.+|+++++. |.++. +++||.+|... | ++++|+.+|+++
T Consensus 143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 8999999999999998 55556 99999999875 3 899999999965
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8e-14 Score=118.87 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=65.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC------S 111 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~------p 111 (524)
++...|....+|+.+|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++ |
T Consensus 30 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p 109 (126)
T 3upv_A 30 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 109 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch
Confidence 4455677777888888888888888888888888888888888888888888888888888888888888887 5
Q ss_pred CcHHHHHHHHHHHHH
Q 009850 112 DQAQESLDNILLDLY 126 (524)
Q Consensus 112 ~~~~~~l~~~lg~~~ 126 (524)
.+. .+...+..+.
T Consensus 110 ~~~--~~~~~l~~~~ 122 (126)
T 3upv_A 110 SAR--EIDQLYYKAS 122 (126)
T ss_dssp THH--HHHHHHHHHH
T ss_pred hHH--HHHHHHHHHH
Confidence 554 5555555443
No 118
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.56 E-value=3.6e-14 Score=128.54 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=115.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHcCCh--H
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL-YKRCGRL--D 133 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~-~~~~g~~--~ 133 (524)
...|++++|+..|++++..+|++..+++.+|.++...|++++|+.+|++++..+|+++ .++..+|.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchH
Confidence 5678999999999999999999999999999999999999999999999999999987 677888999 8899999 9
Q ss_pred HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 134 DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 134 eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+|+..|++++.. +|++..+++++|.++...|++++|+.+|++++.++|++..
T Consensus 99 ~A~~~~~~al~~--------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALAL--------------------------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999998 8999999999999999999999999999999999998855
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.56 E-value=2.9e-13 Score=133.41 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD------SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQE 116 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~------~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~ 116 (524)
..+...+..++..|++++|+..+.++++..+... ..++.+|.++...|++++|+.+|++++...+.. ...
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4566788899999999999999999999877654 346678999999999999999999999876532 224
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHHHHHcCCH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWALMQQNNY 192 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~~~~~g~~ 192 (524)
.+++.+|.+|...|++++|+.+|++++.+.. ..|++ ..+++++|.+|..+|+|
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-----------------------~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLE-----------------------ALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------HSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------------hcCccccchHHHHHhHHHHHHHHhhH
Confidence 6888999999999999999999999997621 13442 36899999999999999
Q ss_pred HHHHHHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHH-HHHHHHhc
Q 009850 193 IEAEDAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEA-KETLRRVK 236 (524)
Q Consensus 193 ~eAi~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA-~~~~~~a~ 236 (524)
++|+.+|++++.+.++. .. ++++|.+|..+|++++| ..+|++++
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999876431 34 89999999999999999 77788753
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=1.9e-13 Score=121.21 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
.+..+..+|.++...|++++|+..|++++..+|.+. .++..+|.++...|++++|+..|++++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------- 76 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIEL------------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 357789999999999999999999999999999987 77889999999999999999999999998
Q ss_pred HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HH--HHHHHHHHcCCHHHHHHHHHHh
Q 009850 159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MC--NLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~--~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+|.++.+++++|.++...|++++|+.+|++++.++|++.. +. .++..+...|++++|+..+.++
T Consensus 77 -------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 77 -------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 8999999999999999999999999999999999999988 64 4555588999999999999965
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=8.9e-15 Score=143.87 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=146.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
|.++.+++.+|.++...|++++|+..|++++..+|+++ .++..+|.+|...|++++|+..|++++++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~----------- 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALEL----------- 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 56788999999999999999999999999999999987 78889999999999999999999999988
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHH
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETL 232 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~ 232 (524)
+|++..+++++|.+|...|++++|+..|+++++++|++.. .........+...+..
T Consensus 68 ---------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (281)
T 2c2l_A 68 ---------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS----- 127 (281)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHH-----
T ss_pred ---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHH-----
Confidence 8999999999999999999999999999999999997643 1112212222111111
Q ss_pred HHhcccccCC-----------CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHhhcccCCC
Q 009850 233 RRVKPAVADG-----------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 233 ~~a~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eAi~~~~~al~~~P 295 (524)
......+.. .++.++|++.++++++..|++......++..+... +.+++|...|.++....+
T Consensus 128 -~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 128 -IEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp -HHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred -HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 111111111 14566777778888888898888888887777766 778889999988876543
No 122
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-14 Score=134.22 Aligned_cols=154 Identities=16% Similarity=0.081 Sum_probs=122.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------------H
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA--------------Q 115 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~--------------~ 115 (524)
...+......|++++|.+.+.......+.....+..+|.++...|++++|+..|++++...|.++ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 34445556677777777777766666666777888888888888888888888888888877654 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
..++..+|.+|...|++++|+.++++++.+ +|+++.+++.+|.++...|++++|
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~~~~~~A 141 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI--------------------------DKNNVKALYKLGVANMYFGFLEEA 141 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------------------CcccHHHHHHHHHHHHHcccHHHH
Confidence 267788999999999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHH
Q 009850 196 EDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAK 229 (524)
Q Consensus 196 i~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~ 229 (524)
+.+|+++++++|++.. +..++.++..+|+..++.
T Consensus 142 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999888877
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=2.5e-13 Score=126.38 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
...++.+|.++...|++++|+..|++++ +| ++ .++..+|.+|...|++++|+..|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS--RICFNIGCMYTILKNMTEAEKAFTRSINR-------------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Confidence 3457899999999999999999999985 34 44 68899999999999999999999999998
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----------------H-HHHHHHHHHHc
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN----------------K-MCNLGICLMKQ 222 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~----------------~-~~~Lg~~~~~~ 222 (524)
+|+++.+++++|.++...|++++|+.+|++++++.|++. . ++++|.++..+
T Consensus 67 ------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 67 ------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred ------------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999888765 6 99999999999
Q ss_pred CCHHHHHHHHHHh
Q 009850 223 GRIGEAKETLRRV 235 (524)
Q Consensus 223 G~~~eA~~~~~~a 235 (524)
|++++|+.+|+++
T Consensus 135 g~~~~A~~~~~~a 147 (213)
T 1hh8_A 135 EEWKKAEEQLALA 147 (213)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999943
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=117.51 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
.+....+|+.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+.++++++..+|++. .++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHH
Confidence 3445556666666666666666666666666666666666666666666666666666666666666666554 45555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
+|.++...|++++|+.+|++++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666666655
No 125
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.54 E-value=1.7e-13 Score=139.93 Aligned_cols=170 Identities=11% Similarity=0.051 Sum_probs=141.6
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD-------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD--Q-- 113 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p-------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~--~-- 113 (524)
....++.+|.++...|++++|+.++.+++...+ ....++..+|.+|..+|++++|+.+|++++.+.+. +
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345789999999999999999999999998633 23567889999999999999999999999987541 1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 009850 114 AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 114 ~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~ 193 (524)
....++..+|.+|...|++++|+.+|++++.+.. ...+|..+.+++++|.++...|+++
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR---------------------EKVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------hhCChhHHHHHHHHHHHHHHCCCHH
Confidence 2246788999999999999999999999998621 1125777889999999999999999
Q ss_pred HHHHHHHHHHhhCCC-----cHH-HHHHHHHHHHcCC---HHHHHHHHHHh
Q 009850 194 EAEDAYRRALSIAPD-----NNK-MCNLGICLMKQGR---IGEAKETLRRV 235 (524)
Q Consensus 194 eAi~~~~~Al~l~P~-----~~~-~~~Lg~~~~~~G~---~~eA~~~~~~a 235 (524)
+|+.++++++.+.+. ... +..++.++...|+ +.+|+..+++.
T Consensus 279 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~ 329 (378)
T 3q15_A 279 KAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK 329 (378)
T ss_dssp HHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC
Confidence 999999999998543 333 6678888888888 88888888763
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=3.1e-14 Score=124.66 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHH
Q 009850 101 EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLG 180 (524)
Q Consensus 101 ~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~ 180 (524)
..|++++..+|++. ..++.+|..+...|++++|+..|++++.. +|+++.+|+
T Consensus 5 ~~l~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~ 56 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL--EQLYALGFNQYQAGKWDDAQKIFQALCML--------------------------DHYDARYFL 56 (142)
T ss_dssp ----CCTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHH
T ss_pred hhHHHHHcCCHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHh--------------------------CCccHHHHH
Confidence 46777888888776 67788999999999999999999999999 999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 181 NLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 181 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
.+|.++...|++++|+.+|++++.++|+++. ++++|.++..+|++++|+.+|++++...|.
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999 999999999999999999999965444443
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=1.4e-13 Score=116.40 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
|.+...+..+|.++...|++++|+..|++++...|++. .++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICI----------- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhc-----------
Confidence 34455666666666666666666666666666666654 45556666666666666666666666665
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI 225 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~ 225 (524)
+|+++.+++.+|.++...|++++|+.+|++++.++|++.. +..+|.++..+|++
T Consensus 76 ---------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---------------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ---------------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 5666666666666666666666666666666666666666 66666666666553
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=1.1e-13 Score=123.86 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=94.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
++.++..++.+|.++...|++++|+.+|++++.++|+++ .++..+|.+|...|++++|+.+|++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVV---------- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence 345667788888888888888888888888888888876 67778888888888888888888888888
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHH
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLM 220 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~ 220 (524)
+|+++.+|+++|.+|...|++++|+.+|+++++++|++.. |+.++.+..
T Consensus 75 ----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 75 ----------------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 7888888888888888888888888888888888888876 666655443
No 129
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=3.2e-13 Score=141.96 Aligned_cols=211 Identities=11% Similarity=0.016 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPL----FWAAINAGDRVDSALKDMAIVMKQQN---RAEEAIEAIKSLRSRCSDQAQESL 118 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~----~~~al~~~p~~~~a~~~La~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~l 118 (524)
+.+++.+|.++...+.+++++.. ++.+...+| .+++.||.+|...| ++++|+.+|+++....+..+ ..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--~~ 215 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--QR 215 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH--HH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH--HH
Confidence 45567777777776644444433 333333333 36777777777777 67777777777777766665 34
Q ss_pred HHHHHHHHHHc----CChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH-H--HHcCC
Q 009850 119 DNILLDLYKRC----GRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA-L--MQQNN 191 (524)
Q Consensus 119 ~~~lg~~~~~~----g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~-~--~~~g~ 191 (524)
++.+|.+|... +++++|+.+|+++. . +++.++++||.+ + ...++
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----------------------------g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-P----------------------------GYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G----------------------------GSTHHHHHHHHHHHHSGGGCC
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C----------------------------CCHHHHHHHHHHHHhCCCCCC
Confidence 45566666444 56777777777654 2 344555666655 2 34556
Q ss_pred HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC-----CHHHHHHHHHHhcccccCC--------------CcCHHHHHH
Q 009850 192 YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG-----RIGEAKETLRRVKPAVADG--------------PRGVDSHLK 251 (524)
Q Consensus 192 ~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G-----~~~eA~~~~~~a~~~~~~~--------------~~~~~~A~~ 251 (524)
+++|+.+|+++.+.. ++. +++||.+|. .| ++++|+.+|+++.+.++.. ..+.++|+.
T Consensus 267 ~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 666666666655432 444 555665555 33 5666666666543100000 024444555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCCC
Q 009850 252 AYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP 295 (524)
Q Consensus 252 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~P 295 (524)
.|+++.+ +.++.+.+++|.+|.. ..++.+|+..|+++....+
T Consensus 344 ~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 344 HLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5556554 4556678888888774 4578888888888776543
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-13 Score=116.64 Aligned_cols=92 Identities=10% Similarity=-0.047 Sum_probs=80.7
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
++...|.....++.+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|+.+|++++..+|.+. .
T Consensus 42 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~ 119 (133)
T 2lni_A 42 AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK--E 119 (133)
T ss_dssp HHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT--H
T ss_pred HHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch--H
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999876 5
Q ss_pred HHHHHHHHHHHcCC
Q 009850 118 LDNILLDLYKRCGR 131 (524)
Q Consensus 118 l~~~lg~~~~~~g~ 131 (524)
++..++.++...|+
T Consensus 120 ~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 120 AADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 66778888777664
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=1.7e-13 Score=135.08 Aligned_cols=169 Identities=16% Similarity=0.165 Sum_probs=137.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS------ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQESL 118 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~------a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~l 118 (524)
+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+.. ....+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577889999999999999999998776655 34468999999999999999999999975432 12357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
++.+|.+|...|++++|+.+|+++++...... ...+....+++++|.+|..+|+|++|+.+
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALH-------------------DNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------------cchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88999999999999999999999997621100 00123366899999999999999999999
Q ss_pred HHHHHhhCCCc------HH-HHHHHHHHHHcC-CHHHHHHHHHHhc
Q 009850 199 YRRALSIAPDN------NK-MCNLGICLMKQG-RIGEAKETLRRVK 236 (524)
Q Consensus 199 ~~~Al~l~P~~------~~-~~~Lg~~~~~~G-~~~eA~~~~~~a~ 236 (524)
+++++++.+.. .. ++++|.++..+| .+++|+.+|++++
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999986443 44 899999999999 5799999999763
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.53 E-value=8.1e-13 Score=132.73 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=163.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN-RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
+..+..+....+..++|+.++.++|..+|++..+|+.++.++..+| .+++++..+..++..+|++. .+|+..+.++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHH
Confidence 3344444455666689999999999999999999999999999999 59999999999999999997 78888888888
Q ss_pred Hc-C-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--------HHHH
Q 009850 128 RC-G-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYI--------EAED 197 (524)
Q Consensus 128 ~~-g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~--------eAi~ 197 (524)
.. + ++++++.++.++++. +|.+..+|...++++...|.++ ++++
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~--------------------------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLP--------------------------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSS--------------------------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 87 8 999999999999988 9999999999999999999888 9999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE 276 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 276 (524)
++.++++.+|.+.. |++++.++..+++... ....++++++.+.+++..+|++..+|+.+..++..
T Consensus 189 ~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~--------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 189 WCNEMLRVDGRNNSAWGWRWYLRVSRPGAET--------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC--------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcccccc--------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999 9999999999886210 01112344555559999999999999999999888
Q ss_pred cCCH
Q 009850 277 QSRL 280 (524)
Q Consensus 277 ~g~~ 280 (524)
.|+.
T Consensus 255 ~~~~ 258 (349)
T 3q7a_A 255 FSLP 258 (349)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 7764
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.52 E-value=5.8e-13 Score=131.25 Aligned_cols=181 Identities=12% Similarity=0.005 Sum_probs=141.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhh
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAF 152 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~ 152 (524)
|.....+...+..+...|++++|+..+++++...+.... ...++.+|.++...|++++|+..|++++.......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-- 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-- 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--
Confidence 444566778899999999999999999999998875431 23456688889999999999999999997621100
Q ss_pred hcccHHHHHHHhHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCcH----H-HHHHHHHHHHcC
Q 009850 153 NGKRTKTARSQGKKFQVSVEQE-ATRLLGNLGWALMQQNNYIEAEDAYRRAL---SIAPDNN----K-MCNLGICLMKQG 223 (524)
Q Consensus 153 ~~~~~~~a~~~~~~~~~~~~p~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al---~l~P~~~----~-~~~Lg~~~~~~G 223 (524)
++. ...+++++|.+|...|+|++|+.+|++++ +..|++. . ++++|.+|..+|
T Consensus 150 -------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 150 -------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 111 25689999999999999999999999999 4566643 3 899999999999
Q ss_pred CHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHhhcccC
Q 009850 224 RIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA-FLGSSSIWQP 293 (524)
Q Consensus 224 ~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA-i~~~~~al~~ 293 (524)
++++|+.+|++++... .........+.+++++|.+|..+|++++| ...|++++..
T Consensus 211 ~y~~Al~~~~kal~~~---------------~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 211 RYEESLYQVNKAIEIS---------------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHHH---------------HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---------------HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999653211 11111222367899999999999999999 7778888754
No 134
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=1.2e-14 Score=153.13 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=133.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------------HHHHHHHHHH
Q 009850 58 VDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-------------QESLDNILLD 124 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-------------~~~l~~~lg~ 124 (524)
..+++++|+..|+.++...|....++..+|.+++..|+|++|+..|++++.++|.+. ...+++.+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999999999999999999999999999772 1378889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+|..+|++++|+.+|++++++ +|+++.+|+++|.+|..+|+|++|+.+|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGL--------------------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhc--------------------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKET 231 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~ 231 (524)
++|++.. +.+++.++..+|++++|...
T Consensus 380 l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999988754
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=5.1e-13 Score=112.84 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=113.9
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
....++.+|..+...|++++|+..|++++...|++..++..+|.++...|++++|+..+++++..+|+++ .++..+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999987 67889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY 192 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~ 192 (524)
++...|++++|+.+|++++.. +|++..++..+|.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998 899999999999999999875
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=2.8e-14 Score=132.10 Aligned_cols=164 Identities=15% Similarity=0.026 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
+......+.+...+|++++|.+.+.......+... ..+..+|..+...|++++|+..|++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------------- 67 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSA--FDIKEEGNEFFKKNEINEAIVKYKEALDF-------------- 67 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Confidence 34455667777788888888888876555444443 67788999999999999999999999998
Q ss_pred HHHHhHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850 160 ARSQGKKFQVSVEQEAT----------------RLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ 222 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~----------------~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~ 222 (524)
.|.++ .+++++|.++...|+|++|+.+|++++.++|++.. ++++|.++..+
T Consensus 68 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 135 (198)
T 2fbn_A 68 ------------FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF 135 (198)
T ss_dssp ------------TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ------------HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 44443 79999999999999999999999999999999999 99999999999
Q ss_pred CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHhhccc
Q 009850 223 GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF-LGSSSIWQ 292 (524)
Q Consensus 223 G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi-~~~~~al~ 292 (524)
|++++|+.+|+ +++...|++..++..++.++...++..++. ..|...+.
T Consensus 136 ~~~~~A~~~~~---------------------~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 136 GFLEEAKENLY---------------------KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHH---------------------HHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHH---------------------HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 788899999999999999999999888877 34554443
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=2.8e-13 Score=121.29 Aligned_cols=115 Identities=13% Similarity=-0.000 Sum_probs=106.2
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
....|+.+|.+++..|++++|+.+|++++..+|++..+++.+|.+|..+|++++|+.+|++++.++|++. .+++.+|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999999999999999997 78899999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHH
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALM 187 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~ 187 (524)
+|...|++++|+.+|++++++ +|++..+|+.++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA--------------------------EGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------------------------HSSSCCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--------------------------CCCchHHHHHHHHHHH
Confidence 999999999999999999999 7888777766665544
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.50 E-value=1.3e-12 Score=131.29 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=180.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCc
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDK-DPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQ-N-RAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~-g-~~~eAi~~~~~al~~~p~~ 113 (524)
.++...|....+|+..+.++...| ++++++..+..++..+|.+..+|+.++.++..+ + ++++++.++.+++..+|.+
T Consensus 79 ~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN 158 (349)
T 3q7a_A 79 IIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN 158 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred HHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence 466678999999999999999999 599999999999999999999999999999998 8 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH
Q 009850 114 AQESLDNILLDLYKRCGRLD--------DQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA 185 (524)
Q Consensus 114 ~~~~l~~~lg~~~~~~g~~~--------eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~ 185 (524)
. .+|...+.++...|.++ ++++++.++++. +|.+..+|+.++.+
T Consensus 159 y--~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------------------------dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 159 Y--HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------------------------DGRNNSAWGWRWYL 210 (349)
T ss_dssp H--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHH
Confidence 6 67777788888888887 999999999998 99999999999999
Q ss_pred HHHcCC-------HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCH--------------------HHHHHHHHHhcc
Q 009850 186 LMQQNN-------YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRI--------------------GEAKETLRRVKP 237 (524)
Q Consensus 186 ~~~~g~-------~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~--------------------~eA~~~~~~a~~ 237 (524)
+...++ ++++++++.+++.++|++.. |+.+..++...|+. ..-...+.....
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 999987 79999999999999999999 99888888887764 111111111100
Q ss_pred cccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCCC
Q 009850 238 AVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW-QPQPC 296 (524)
Q Consensus 238 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al-~~~P~ 296 (524)
... .....+....++.-++.+|.+.|+.++|+.++..+. +.+|-
T Consensus 291 ---~~~------------~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 291 ---DPL------------PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp ----CC------------CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred ---ccc------------ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 000 001235677889999999999999999999999876 55553
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=2.5e-13 Score=122.94 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=111.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850 90 MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169 (524)
Q Consensus 90 ~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~ 169 (524)
+...|++++|+..+++++..+|+++ .++..+|.+|...|++++|+.+|++++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------------ 73 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQL------------------------ 73 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------
Confidence 4567899999999999999999997 78899999999999999999999999998
Q ss_pred hcCCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 170 SVEQEATRLLGNLGWA-LMQQNNY--IEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 170 ~~~p~~~~a~~~Lg~~-~~~~g~~--~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
+|+++.++..+|.+ +...|++ ++|+.+|++++..+|++.. ++++|.++...|++++|+..|++++...|..
T Consensus 74 --~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 74 --RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp --HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred --CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 89999999999999 8899999 9999999999999999998 9999999999999999999999766655554
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.50 E-value=1.5e-12 Score=109.05 Aligned_cols=116 Identities=28% Similarity=0.329 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
..+++.+|.++...|++++|+..|++++...|++. .++..+|.++...|++++|+.+|++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALEL-------------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------
Confidence 45566666666666666666666666666666554 44555566666666666666666666655
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 223 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G 223 (524)
+|.+..++..+|.++...|++++|+.+|++++..+|++.. +.++|.++...|
T Consensus 73 ------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 ------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 5556666666666666666666666666666666666655 556666655443
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.47 E-value=6.6e-13 Score=130.84 Aligned_cols=174 Identities=11% Similarity=-0.006 Sum_probs=136.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 83 LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ----ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 83 ~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
+...+..+...|++++|+..+++++...+..+. ...+..+|.++...|++++|+.+|++++.+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~---------- 147 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT---------- 147 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC----------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc----------
Confidence 445578889999999999999999998876543 234446888888899999999999999986211
Q ss_pred HHHHHhHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCc----HH-HHHHHHHHHHcCCHHH
Q 009850 159 TARSQGKKFQVSVEQE---ATRLLGNLGWALMQQNNYIEAEDAYRRALSIA---PDN----NK-MCNLGICLMKQGRIGE 227 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~----~~-~~~Lg~~~~~~G~~~e 227 (524)
.++ ...+++++|.+|...|+|++|+.+|+++++.. |.+ .. ++++|.+|..+|++++
T Consensus 148 -------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 3u3w_A 148 -------------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp -------------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 111 14579999999999999999999999999532 122 22 8899999999999999
Q ss_pred HHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHhhcccCC
Q 009850 228 AKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR-LFDAFLGSSSIWQPQ 294 (524)
Q Consensus 228 A~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eAi~~~~~al~~~ 294 (524)
|+.++++++... +.....+..+.+++++|.++..+|+ +++|+..|++++...
T Consensus 215 A~~~~~~al~~~---------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 215 SLYQVNKAIEIS---------------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHH---------------HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999653321 1112233447899999999999995 699999999998654
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=1.1e-12 Score=112.80 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN 120 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~ 120 (524)
..++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|++++.++|++. ...++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999999999999999988542 235778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
.+|.++...|++++|+.+|++++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999999999987
No 143
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.47 E-value=1.9e-12 Score=147.31 Aligned_cols=228 Identities=10% Similarity=0.044 Sum_probs=164.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCCh
Q 009850 53 KNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRL 132 (524)
Q Consensus 53 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~ 132 (524)
...+...|++++|++.+.++ +.+.+|+.+|.++...|++++|+..|.++ +++ ..+..++.++.+.|++
T Consensus 1083 ~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~--say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1083 QVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP--SSYMEVVQAANTSGNW 1150 (1630)
T ss_pred HHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh--HHHHHHHHHHHHcCCH
Confidence 33344778888888888765 56788888888888888888888888775 443 4556778888888888
Q ss_pred HHHHHHHHHHHHHhhcc-------Hhhhc-ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 133 DDQIALLKHKLYLIQQG-------LAFNG-KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 133 ~eA~~~~~~al~l~~~~-------~~~~~-~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
++|+++|..+.+..+.. .++.. .+.+....+ ++..+...+..+|..+...|+|++|+.+|.++
T Consensus 1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f-------I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF-------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH-------HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 88888888877665222 22222 222222222 12334456778999999999999999999996
Q ss_pred hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850 205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGP----------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR 274 (524)
Q Consensus 205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 274 (524)
..|..+|.+|.++|++++|+++++++... ..| +.+..|..+.. ....+++.+..++..|
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~--~aWkev~~acve~~Ef~LA~~cgl----~Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKANST--RTWKEVCFACVDGKEFRLAQMCGL----HIVVHADELEELINYY 1290 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCH--HHHHHHHHHHhhhhHHHHHHHHHH----hhhcCHHHHHHHHHHH
Confidence 24999999999999999999999998332 222 22333332222 1334556677899999
Q ss_pred HHcCCHHHHHHHHhhcccCCCCCCCccccccccccccc
Q 009850 275 VEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDD 312 (524)
Q Consensus 275 ~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~ 312 (524)
...|.+++|+..++.++.++|.+..+...++.+++.-.
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 99999999999999999999888776655555555433
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=5.8e-13 Score=114.48 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=95.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 78 RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 78 ~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
+.+.++..+|.+++..|+|++|+.+|+++++++|+++ .++..+|.+|..+|++++|+..|++++++.+.....
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD----- 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-----
Confidence 3456788999999999999999999999999999997 788999999999999999999999999984321100
Q ss_pred HHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 009850 158 KTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN 210 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 210 (524)
.+..+.++.++|.++...|++++|+.+|++++...|+..
T Consensus 79 --------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 79 --------------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred --------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 001146899999999999999999999999999988643
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.47 E-value=8.7e-14 Score=135.55 Aligned_cols=189 Identities=14% Similarity=0.049 Sum_probs=158.1
Q ss_pred hhhhhhHH-HHhcCCCChHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCcHHH-------------------
Q 009850 30 RTRSDSFH-AIHKVPVGDTPYVRA-------KNVQLVDKDPEKAIPLFWAAINAGDRVDSA------------------- 82 (524)
Q Consensus 30 ~~~~~~~~-~~~~~p~~~~~~~~l-------g~~~~~~g~~~~Ai~~~~~al~~~p~~~~a------------------- 82 (524)
..+...|. ++...|...++|..+ +.++...++..+++..+++.+.+.|....+
T Consensus 23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 33444454 557789999999999 899999999999999999999987765444
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 83 --LKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 83 --~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
...++.++...|+|++|.+.|..++...|++. ..+.+|.++.+.++|++|+..|+.++..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~--------------- 164 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKW--------------- 164 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGC---------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhcc---------------
Confidence 44588999999999999999999998888764 6688899999999999999999876543
Q ss_pred HHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-cHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 161 RSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIA--PD-NNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~-~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
|+. ..+++++|.++..+|++++|+.+|++++.-. |. ... ++++|.|+.++|+.++|...|+
T Consensus 165 ------------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 165 ------------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222 4589999999999999999999999999644 55 455 9999999999999999999999
Q ss_pred HhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 234 RVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 234 ~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
+++...|+ ..++..|
T Consensus 233 ---------------------~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 233 ---------------------WLQTTHPE-PKVAAAL 247 (282)
T ss_dssp ---------------------HHHHHSCC-HHHHHHH
T ss_pred ---------------------HHHhcCCc-HHHHHHH
Confidence 67777787 6655554
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=8.4e-13 Score=113.60 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
+|.++..++.+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|++++.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------- 72 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALEL---------- 72 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------
Confidence 345555566666666666666666666666666665554 45555566666666666666666666555
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD 208 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 208 (524)
+|+++.+++++|.++...|++++|+.+|++++.++|+
T Consensus 73 ----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ----------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5555666666666666666666666666666665554
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=3.5e-12 Score=106.65 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...|+.+|.++...|++++|+..|.+++...|++..++..+|.++...|++++|+.++++++...|.+. ..+..+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999887 677899999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN 190 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g 190 (524)
+...|++++|+.+|++++.. +|++..++..+|.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--------------------------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHh--------------------------CCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999998 8999999999999988765
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.46 E-value=5.7e-14 Score=147.95 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=148.0
Q ss_pred ChHHHHHHHHH----HHHcCCCcHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 61 DPEKAIPLFWA----AINAGDRVDSALKDMAIVM------------KQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 61 ~~~~Ai~~~~~----al~~~p~~~~a~~~La~~~------------~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
.++.|+..+++ ++.++|.. +|...|... ..++++++|+..|+.++...|..+ ..+..+|.
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a--~~~~~~G~ 276 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA--AIVKEKGT 276 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHH--HHHHHHHH
Confidence 45667766666 66677764 344433322 144567788888888888877776 67889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
.|...|+|++|+..|++++++.+....+.. +.. ...++....+|+++|.+|.++|+|++|+.+|++++.
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~~--------~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---KES--------KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---HHH--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCCh---HHH--------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999999998432211000 000 000122268999999999999999999999999999
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 283 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA 283 (524)
++|++.. |+++|.+|..+|++++|+.+|+ +++++.|++..++.+++.++..++++.+|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~---------------------~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFE---------------------KVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH---------------------HHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999 78889999999999999999999999988
Q ss_pred HHH-Hhhcc
Q 009850 284 FLG-SSSIW 291 (524)
Q Consensus 284 i~~-~~~al 291 (524)
... |...+
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 764 55554
No 149
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=3.3e-12 Score=134.20 Aligned_cols=225 Identities=8% Similarity=-0.022 Sum_probs=176.2
Q ss_pred hhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHH
Q 009850 32 RSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-GDRVDSALKDMAIVMKQQNRAEE----AIEAIKSL 106 (524)
Q Consensus 32 ~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~e----Ai~~~~~a 106 (524)
+...+..... +..+.+++.+|.+|...+...++...+...... .+.++.+++.||.+|...+.+++ +..+++.+
T Consensus 93 A~~~~~~Aa~-~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a 171 (452)
T 3e4b_A 93 AESLLKKAFA-NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA 171 (452)
T ss_dssp HHHHHHHHHH-TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 3334443333 334558999999999988766554444444433 24567899999999999995554 44455555
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850 107 RSRCSDQAQESLDNILLDLYKRCG---RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG 183 (524)
Q Consensus 107 l~~~p~~~~~~l~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg 183 (524)
...+|. +++.+|.+|...| ++++|+.+|+++.+. .+..+..++++|
T Consensus 172 ~~~~~~-----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------------------------g~~~a~~~~~Lg 220 (452)
T 3e4b_A 172 LNTTDI-----CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------------------------GTVTAQRVDSVA 220 (452)
T ss_dssp TTTCTT-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------------------------TCSCHHHHHHHH
T ss_pred HcCCHH-----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHH
Confidence 554443 5678899999999 999999999999988 788888889999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHhhCCCcHH-HHHHHHH-H--HHcCCHHHHHHHHHHhcccc-cC-------------
Q 009850 184 WALMQQ----NNYIEAEDAYRRALSIAPDNNK-MCNLGIC-L--MKQGRIGEAKETLRRVKPAV-AD------------- 241 (524)
Q Consensus 184 ~~~~~~----g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~-~--~~~G~~~eA~~~~~~a~~~~-~~------------- 241 (524)
.+|... +++++|+.+|+++. |.++. ++++|.+ + ...|++++|+.+|+++.... +.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~ 297 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGK 297 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 999766 79999999999998 88888 9999999 4 56899999999999985322 11
Q ss_pred -CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHhhcccCC
Q 009850 242 -GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 242 -~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eAi~~~~~al~~~ 294 (524)
...+.++|+..|+++. +.++.+++++|.+|.. ..++.+|+..|+++.+..
T Consensus 298 g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 298 WVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp SSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 1138899999999999 9999999999998887 449999999999998753
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=3.1e-13 Score=119.96 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------c-----HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD-------N-----NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-------~-----~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
+..+.++|..++..|+|++|+..|+++++++|+ + .. |+|+|.++..+|++++|+.+|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k-------- 82 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK-------- 82 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence 457899999999999999999999999999999 3 23 99999999999999999999995
Q ss_pred CcCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 243 PRGVDSHLKAYERAQQMLKDLESEM----MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 243 ~~~~~~A~~~~~~al~~~p~~~~a~----~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
|++.|.+..+++|++..+| +++|.++..+|++++|+.+|++++.++|.+....
T Consensus 83 ------AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 83 ------ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp ------HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4455667777799999999 9999999999999999999999999999988765
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=7.6e-13 Score=118.19 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINA------------------GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR 107 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al 107 (524)
...+..+|..++..|+|++|+..|.+++.. +|.+..++.++|.+|..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456889999999999999999999999999 77788999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH-HHHHHHHHHH
Q 009850 108 SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT-RLLGNLGWAL 186 (524)
Q Consensus 108 ~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-~a~~~Lg~~~ 186 (524)
.++|+++ .+++.+|.+|..+|++++|+..|++++.+ +|++. .+...++.+.
T Consensus 91 ~~~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETNE--KALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHH
T ss_pred hcCCcch--HHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHH
Confidence 9999997 78899999999999999999999999999 88887 6677787777
Q ss_pred HHcCCHH
Q 009850 187 MQQNNYI 193 (524)
Q Consensus 187 ~~~g~~~ 193 (524)
...+++.
T Consensus 143 ~~~~~~~ 149 (162)
T 3rkv_A 143 ERRAEKK 149 (162)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6655443
No 152
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.45 E-value=2e-14 Score=147.93 Aligned_cols=216 Identities=10% Similarity=0.068 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
.++.|..+|..+...|++++|+..|.++ .++..+..++.++...|++++|+.+++.+.+..++ + .+...++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~--~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S--YVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c--hhHHHHHH
Confidence 3468999999999999999999999764 46678999999999999999999999998886444 3 55677888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+|.++|+++++.++++ .|+ ..+|..+|..+...|+|++|..+|.++
T Consensus 103 ~Y~Klg~l~e~e~f~~-------------------------------~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------------------------------GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------CHHHHTTTTT-------------------------------CC-----------------CTTTHHHHHHHT--
T ss_pred HHHHhCCHHHHHHHHc-------------------------------CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 8999999999887664 233 348999999999999999999999977
Q ss_pred hCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850 205 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGP----------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR 274 (524)
Q Consensus 205 l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 274 (524)
..|..+|.|+.++|++++|++.|+++. .+..| +.++.|..+... +. ..++-...+...|
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~---~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-IV---VHADELEELINYY 217 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-TT---TCHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-HH---hCHhhHHHHHHHH
Confidence 128899999999999999999999883 22222 455555443332 11 3444455688899
Q ss_pred HHcCCHHHHHHHHhhcccCCCCCCCcccccccccccccc
Q 009850 275 VEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDF 313 (524)
Q Consensus 275 ~~~g~~~eAi~~~~~al~~~P~~~~~l~~~~l~~~~q~l 313 (524)
...|++++|+..++.++.+++.+..+...++++++.-..
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999998887766555666654433
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=1.6e-12 Score=111.82 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=97.6
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNI 121 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~ 121 (524)
.+.....|+.+|..++..|++++|+..|.+++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+++.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999987 78899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
+|.+|...|++++|+..|++++.+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999999999984
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=3.7e-12 Score=105.51 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
+..++.+|.++...|++++|+..|++++..+|.++ .++..+|.++...|++++|+..+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 34455555555555555555555555555555544 34455555555555555555555555555
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC 218 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~ 218 (524)
+|+++.+++.+|.++...|++++|+.+|+++++.+|++.. +..++.+
T Consensus 68 ------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 68 ------------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4555555555555555555555555555555555555555 4444443
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=9.9e-13 Score=112.03 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR 128 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~ 128 (524)
++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++ .++..+|.+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666666666666666666666655 455556666666
Q ss_pred cCChHHHHHHHHHHHHH
Q 009850 129 CGRLDDQIALLKHKLYL 145 (524)
Q Consensus 129 ~g~~~eA~~~~~~al~l 145 (524)
.|++++|+..|++++++
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666555
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=1.6e-12 Score=119.35 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=125.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHcCC
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD----QAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~l~~~lg~~~~~~g~ 131 (524)
.+..|++++|+..++......+....++..+|.++...|++++|+.++++++.+... .....++..+|.+|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 367899999999666555444477899999999999999999999999999985431 1224678899999999999
Q ss_pred hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ----EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
+++|+.++++++.+.. ..+ ....++.++|.++...|++++|+.++++++.+.+
T Consensus 82 ~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 82 WDAARRCFLEERELLA-----------------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHH-----------------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998721 123 2256899999999999999999999999997642
Q ss_pred C--cHH-----HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 208 D--NNK-----MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 208 ~--~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
. +.. +.++|.++..+|++++|+.++++++
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 211 6799999999999999999999764
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.44 E-value=1e-12 Score=117.39 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSR------------------CSDQAQESLDNILLDLYKRCGRLDDQIALLK 140 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~------------------~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~ 140 (524)
.+..+..+|..++..|+|++|+..|++++.. +|... .++..+|.+|..+|++++|+..++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI--PLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHH--HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3577899999999999999999999999998 44443 678899999999999999999999
Q ss_pred HHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-H-HHHHHHH
Q 009850 141 HKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNN-K-MCNLGIC 218 (524)
Q Consensus 141 ~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-~-~~~Lg~~ 218 (524)
+++.+ +|+++.+|+.+|.+|...|++++|+..|++++.++|++. . ...++.+
T Consensus 88 ~al~~--------------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 88 EVLKR--------------------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHH--------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhc--------------------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999 899999999999999999999999999999999999998 4 6667776
Q ss_pred HHHcCC
Q 009850 219 LMKQGR 224 (524)
Q Consensus 219 ~~~~G~ 224 (524)
....++
T Consensus 142 ~~~~~~ 147 (162)
T 3rkv_A 142 TERRAE 147 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=3.8e-12 Score=105.48 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDL 125 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~ 125 (524)
...++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++ .++..+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999987 678899999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHH
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWAL 186 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~ 186 (524)
+...|++++|+..|+++++. +|++..++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--------------------------EANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHHhh
Confidence 99999999999999999988 899999999888765
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=9.4e-13 Score=112.17 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=72.0
Q ss_pred hhhhhhhHH-HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 29 SRTRSDSFH-AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR 107 (524)
Q Consensus 29 l~~~~~~~~-~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al 107 (524)
...+...+. ++...|....+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|+..|++++
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444443 5567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcH
Q 009850 108 SRCSDQA 114 (524)
Q Consensus 108 ~~~p~~~ 114 (524)
+.+|++.
T Consensus 113 ~~~P~~~ 119 (121)
T 1hxi_A 113 LSQPQYE 119 (121)
T ss_dssp C------
T ss_pred HhCcCCC
Confidence 9999764
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=6.8e-12 Score=129.67 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD-----------------SALKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~-----------------~a~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
|.+.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577788899999999999999999999877543 4688999999999999999999999988
Q ss_pred hCCCcH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850 109 RCSDQA----QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW 184 (524)
Q Consensus 109 ~~p~~~----~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~ 184 (524)
..+... ...+...++.++...|++++|+.++++++..... ....+....++.++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR--------------------EKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH--------------------SSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--------------------hCccHHHHHHHHHHHH
Confidence 766431 1245667888888899999999999999877211 1113445779999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHH
Q 009850 185 ALMQQNNYIEAEDAYRRALSIA------PDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ 257 (524)
Q Consensus 185 ~~~~~g~~~eAi~~~~~Al~l~------P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al 257 (524)
+|...|+|++|+..+++++... +.... +.++|.+|..+|++++|...|++++...+
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----------------- 206 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN----------------- 206 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh-----------------
Confidence 9999999999999999998752 22233 88999999999999999999997643221
Q ss_pred HhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 258 QMLKD----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 258 ~~~p~----~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
..++ ....+..+|.++...|++.+|..+|..++...
T Consensus 207 -~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 207 -SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp -HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred -cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 1122 13567888999999999999999998887643
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.42 E-value=1.2e-12 Score=116.09 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR-------VDS-----ALKDMAIVMKQQNRAEEAIEAIKSLRSR---- 109 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~-----a~~~La~~~~~~g~~~eAi~~~~~al~~---- 109 (524)
...+..+|..++..|+|++|+..|+++|+++|+ +.. +|.++|.++..+|+|++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCcHHHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 009850 110 ---CSDQAQESLD----NILLDLYKRCGRLDDQIALLKHKLYLIQQ 148 (524)
Q Consensus 110 ---~p~~~~~~l~----~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 148 (524)
+|++. .+| +.+|.++..+|++++|+..|++++++.+.
T Consensus 91 ~e~~pd~~--~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEG--KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchH--HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99987 677 99999999999999999999999999544
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.9e-12 Score=109.75 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=74.1
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
..+.....++.+|..++..|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.++++++..+|++. .
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--K 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--H
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--H
Confidence 346667777777877777888888888888877777776 66677777777777777777777777777777665 5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
++..+|.+|...|++++|+.+|++++.+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5566666777777777777777777666
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.41 E-value=1.4e-12 Score=119.90 Aligned_cols=171 Identities=11% Similarity=0.073 Sum_probs=126.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHH
Q 009850 90 MKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQV 169 (524)
Q Consensus 90 ~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~ 169 (524)
+...|++++|...++.+.. +|.. ...++..+|.++...|++++|+.+|++++.+... .
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------~ 59 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT-ASGARFMLGYVYAFMDRFDEARASFQALQQQAQK--------------------S 59 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------------------T
T ss_pred ccccccHHHHHHHHHHhcC-ChHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH--------------------c
Confidence 3567999999996655544 4432 2378889999999999999999999999986211 0
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcH----H-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI---APDNN----K-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~----~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
...+....++.++|.++...|++++|+.+|++++.+ .++++ . ++++|.++..+|++++|+.++++++.....
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 012344678999999999999999999999999998 45332 2 889999999999999999999975332100
Q ss_pred CCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCC
Q 009850 242 GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 242 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~ 297 (524)
.........++.++|.++..+|++++|+..++++++.....
T Consensus 140 ---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 140 ---------------ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 00001123457899999999999999999999998764433
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.40 E-value=9.7e-14 Score=146.98 Aligned_cols=134 Identities=10% Similarity=0.002 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
+++.+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..|+++++++|+++ .+++.+|.+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence 3566778889999999999999999999999999999999999999999999999999999999997 78889999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWA--LMQQNNYIEAEDAYR----- 200 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~--~~~~g~~~eAi~~~~----- 200 (524)
.+|++++|+..|++++++ +|++..++.+++.+ +...|++++|+..++
T Consensus 86 ~~g~~~eA~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKV--------------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp HHTCHHHHHHHHHHHHHH--------------------------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred HcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999999999 89999999999998 889999999999999
Q ss_pred ------HHHhhCCCc
Q 009850 201 ------RALSIAPDN 209 (524)
Q Consensus 201 ------~Al~l~P~~ 209 (524)
+++.++|+.
T Consensus 140 ~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 140 VDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCCTTSSCCCCTTC
T ss_pred Hhhhhhhhccccccc
Confidence 888887765
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=9.7e-12 Score=105.66 Aligned_cols=118 Identities=11% Similarity=-0.104 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD---SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILL 123 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg 123 (524)
+++.+|.+++..|++++|+..|++++...|++. .+++.+|.++...|++++|+..|++++..+|++.. ..+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 488999999999999999999999999999988 89999999999999999999999999999998721 26778999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 009850 124 DLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN 191 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~ 191 (524)
.+|...|++++|+..|++++.. .|++..+...+..+....++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~--------------------------~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ--------------------------YPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------------------------STTSHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--------------------------CCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 78877766666555444433
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=8.3e-12 Score=108.26 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=77.2
Q ss_pred hhhhHHHH-hcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009850 32 RSDSFHAI-HKVPVG---DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLR 107 (524)
Q Consensus 32 ~~~~~~~~-~~~p~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al 107 (524)
+...+..+ ...|.. ...|+.+|.++...|++++|+..|++++..+|++..+++.+|.++..+|++++|+.+|++++
T Consensus 47 A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 47 ALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444433 344554 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHH
Q 009850 108 SRCSDQAQESLDNILLDL 125 (524)
Q Consensus 108 ~~~p~~~~~~l~~~lg~~ 125 (524)
.++|++. .++..++.+
T Consensus 127 ~~~p~~~--~~~~~l~~~ 142 (148)
T 2dba_A 127 SLEPKNK--VFQEALRNI 142 (148)
T ss_dssp HHCSSCH--HHHHHHHHH
T ss_pred HcCCCcH--HHHHHHHHH
Confidence 9999886 455555554
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.38 E-value=5.2e-13 Score=134.89 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
....++.+|..++..|++++|+.+|++++...|++.. +...|++.++...+. ..+++.+|.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 3456888888888999999999999999888887652 222333444433221 135566777
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 125 LYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+|..+|++++|+.+|++++++ +|++..+|+++|.+|..+|++++|+.+|+++++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--------------------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777 677777777777777777777777777777777
Q ss_pred hCCCcHH-HHHHHHHH-HHcCCHHHHHHHHHHhcccccCC
Q 009850 205 IAPDNNK-MCNLGICL-MKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~-~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
++|++.. +.+++.+. ...+..+++...|.+++...|..
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ----------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 7777766 66677663 34456666677777765555443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.36 E-value=6.3e-12 Score=106.16 Aligned_cols=116 Identities=9% Similarity=0.095 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
.+..++.+|.++...|++++|+.+|++++..+|.++ .++..+|.+|...|++++|+.+|++++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------- 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEV------------- 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------
Confidence 456778888888888888888888888888888776 66778888888888888888888888877
Q ss_pred HHHHHhHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcC
Q 009850 159 TARSQGKKFQVSVEQEA-------TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 223 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G 223 (524)
.|.+ ..+++.+|.++...|++++|+.+|++++...|+ .. +..++.+....+
T Consensus 68 -------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 68 -------------GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp -------------HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred -------------ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 2333 778999999999999999999999999999995 55 777877766543
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=3.3e-12 Score=104.89 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=61.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 76 GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 76 ~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
+|++..+++.+|.++...|++++|+..|++++..+|.+. .++..+|.++...|++++|+.+|+++++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------- 69 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINV---------- 69 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence 345555555566666666666666666666666555554 44455555555666666666666665555
Q ss_pred cHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 009850 156 RTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQ-NNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~ 209 (524)
+|. +..+++.+|.++... |++++|+.++++++...|.+
T Consensus 70 ----------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 ----------------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp ----------------SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ----------------CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 555 555666666666666 66666666666666555543
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=3.8e-12 Score=104.57 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL 250 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~ 250 (524)
+|+++.+++.+|.++...|++++|+.+|+++++.+|.+.. ++++|.++..+|++++|+.+|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------- 64 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN----------------- 64 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------
Confidence 6888899999999999999999999999999999999988 9999999999999999999999
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHhhcccCCCCCC
Q 009850 251 KAYERAQQMLKD--LESEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQPCKD 298 (524)
Q Consensus 251 ~~~~~al~~~p~--~~~a~~~lg~~~~~~-g~~~eAi~~~~~al~~~P~~~ 298 (524)
+++...|. ...+++.+|.++... |++++|+..++.++...|.+.
T Consensus 65 ----~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 65 ----YVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ----HHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ----HHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77888899 999999999999999 999999999999999998764
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=9.2e-12 Score=134.39 Aligned_cols=163 Identities=7% Similarity=-0.030 Sum_probs=151.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKD----------PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN--RAEEAIEAIK 104 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g--~~~eAi~~~~ 104 (524)
.++...|....+|+..+.++...|+ +++|+..+.+++..+|.+..+|+.++.++...| +++++++.+.
T Consensus 54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 4556779999999999999999998 999999999999999999999999999999999 7799999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850 105 SLRSRCSDQAQESLDNILLDLYKRCG-RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG 183 (524)
Q Consensus 105 ~al~~~p~~~~~~l~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg 183 (524)
++++.+|.+. .+|...+.++...| .++++++++.++++. +|.+..+|+.+|
T Consensus 134 k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------------------------~p~n~saW~~r~ 185 (567)
T 1dce_A 134 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITR--------------------------NFSNYSSWHYRS 185 (567)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------------------------TCCCHHHHHHHH
T ss_pred HHHhhccccc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------------------------CCCCccHHHHHH
Confidence 9999999997 77888899999999 899999999999988 999999999999
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850 184 WALMQQ--------------NNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE 227 (524)
Q Consensus 184 ~~~~~~--------------g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e 227 (524)
.++... +.+++|++++.+|+.++|++.. |+.++.++...+++++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999885 6689999999999999999998 9999999999988665
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=2.5e-11 Score=103.12 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHH
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKT 159 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~ 159 (524)
.+++.+|.++...|++++|+..|++++..+|++.. ..+++.+|.++...|++++|+..|++++..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------------- 68 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-------------- 68 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------
Confidence 45788999999999999999999999999997742 246788899999999999999999999988
Q ss_pred HHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q 009850 160 ARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICL 219 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~ 219 (524)
+|++ +.+++.+|.++...|++++|+..|++++...|++.. ...+..+.
T Consensus 69 ------------~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 69 ------------YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp ------------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ------------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7888 889999999999999999999999999999999877 44444333
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.35 E-value=8.8e-12 Score=105.26 Aligned_cols=118 Identities=12% Similarity=0.011 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-----QESLDN 120 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~l~~ 120 (524)
...|+.+|..++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+.++++++...|.+. ...++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999987540 036788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN 190 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g 190 (524)
.+|.+|...|++++|+.+|++++.. .| +...+..++.+....+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--------------------------~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--------------------------HR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--------------------------CC-CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 66 5777788877766543
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.34 E-value=9.5e-12 Score=108.78 Aligned_cols=142 Identities=14% Similarity=0.019 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQE 116 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~ 116 (524)
..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++...+.. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 457888999999999999999999988874432 2477888999999999999999999888775421 123
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.++..+|.++...|++++|+.++++++.+.... ...+....++..+|.++...|++++|+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------------KDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------------cchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 566788888888899999998888888762110 001122567788888888888888888
Q ss_pred HHHHHHHhhCCC
Q 009850 197 DAYRRALSIAPD 208 (524)
Q Consensus 197 ~~~~~Al~l~P~ 208 (524)
.++++++++...
T Consensus 150 ~~~~~a~~~~~~ 161 (164)
T 3ro3_A 150 HFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 888888876543
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.34 E-value=1.1e-11 Score=126.67 Aligned_cols=125 Identities=11% Similarity=0.009 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAIN----------------AGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~----------------~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~ 109 (524)
...|..+|..++..|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999 78888999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHc
Q 009850 110 CSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQ 189 (524)
Q Consensus 110 ~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~ 189 (524)
+|+++ .+++.+|.+|..+|++++|+..|++++++ +|++..++..++.++...
T Consensus 303 ~p~~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------------------------~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 303 DPSNT--KALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------APEDKAIQAELLKVKQKI 354 (370)
T ss_dssp CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHH
Confidence 99987 78899999999999999999999999999 899999999999999999
Q ss_pred CCHHHHHHH
Q 009850 190 NNYIEAEDA 198 (524)
Q Consensus 190 g~~~eAi~~ 198 (524)
++++++...
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999888754
No 176
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=7.5e-11 Score=116.31 Aligned_cols=168 Identities=13% Similarity=0.001 Sum_probs=134.8
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHH
Q 009850 43 PVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGD--RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD-----QAQ 115 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~-----~~~ 115 (524)
+....+++.+|.++...|++++|+.++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+.+|+ +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~- 175 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE- 175 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH-
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH-
Confidence 35566778999999999999999999999999987 89999999999999999999999999999999983 32
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCC
Q 009850 116 ESLDNILLDLYKRCG--RLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNN 191 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~ 191 (524)
..+...-+.+....| ++.+|...|+++... .|+ ....+++ +++.+|+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------------------------~p~~~~~~lLln---~~~~~g~ 226 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--------------------------FPTWKTQLGLLN---LHLQQRN 226 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------------------------SCSHHHHHHHHH---HHHHHTC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------------------CCCcccHHHHHH---HHHHcCC
Confidence 122233344455556 999999999998665 555 2344444 8999999
Q ss_pred HHHHHHHHHHHHhh----------CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC
Q 009850 192 YIEAEDAYRRALSI----------APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 192 ~~eAi~~~~~Al~l----------~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~ 242 (524)
+++|...++.+++. +|+++. +.|++.+...+|+ +|.++++++....|+.
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 99999999988877 588988 8899999999998 7888888544444443
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=3e-11 Score=119.17 Aligned_cols=193 Identities=9% Similarity=-0.023 Sum_probs=152.2
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850 65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS--DQAQESLDNILLDLYKRCGRLDDQIALLKHK 142 (524)
Q Consensus 65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~a 142 (524)
|+..|++.+...+....++..+|.++...|++++|++++.+.+..+| .+. .+...++.++...|+.+.|.+.++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l--ea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--ELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH--HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 78888888877666677788999999999999999999999999887 444 67788899999999999999999998
Q ss_pred HHHhhccHhhhcccHHHHHHHhHHHHHhcCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCc--HH-
Q 009850 143 LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE------ATRLLGNLGWALMQQN--NYIEAEDAYRRALSIAPDN--NK- 211 (524)
Q Consensus 143 l~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~------~~~a~~~Lg~~~~~~g--~~~eAi~~~~~Al~l~P~~--~~- 211 (524)
.+. +|+ ...+...-|++.+..| ++.+|...|+++....|+. ..
T Consensus 163 ~~~--------------------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l 216 (310)
T 3mv2_B 163 TNA--------------------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG 216 (310)
T ss_dssp HHH--------------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH
T ss_pred Hhc--------------------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH
Confidence 877 662 2333444466677777 9999999999999888872 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
+++ ++..+|++++|...++.+...+|.-. .--..+|+++.++.|+..+...+|+ +|.+.++++.
T Consensus 217 Lln---~~~~~g~~~eAe~~L~~l~~~~p~~~-----------~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 217 LLN---LHLQQRNIAEAQGIVELLLSDYYSVE-----------QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHH---HHHHHTCHHHHHHHHHHHHSHHHHTT-----------TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred HHH---HHHHcCCHHHHHHHHHHHHHhccccc-----------ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 444 89999999999999984322111000 0001158899999999999999998 8899999999
Q ss_pred cCCCCCCCcc
Q 009850 292 QPQPCKDHIL 301 (524)
Q Consensus 292 ~~~P~~~~~l 301 (524)
+.+|.++-+.
T Consensus 281 ~~~P~hp~i~ 290 (310)
T 3mv2_B 281 KLDHEHAFIK 290 (310)
T ss_dssp HTTCCCHHHH
T ss_pred HhCCCChHHH
Confidence 9999987644
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=2e-12 Score=136.82 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
.+..+|..+...|++++|+..|++++++ +|+++.+++++|.+|..+|++++|+.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIEL--------------------------NPSNAIYYGNRSLAYLRTECYGYALG 61 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 3445677788899999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--H
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGD--R 274 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~--~ 274 (524)
+|+++++++|++.. ++++|.+|..+|++++|+..|+ ++++..|+...++.+++.+ +
T Consensus 62 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~---------------------~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE---------------------TVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHHSTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------HHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999 7788899999999999988 8
Q ss_pred HHcCCHHHHHHHHh-----------hcccCCCCCCC
Q 009850 275 VEQSRLFDAFLGSS-----------SIWQPQPCKDH 299 (524)
Q Consensus 275 ~~~g~~~eAi~~~~-----------~al~~~P~~~~ 299 (524)
..+|++++|+..++ +++..+|....
T Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 89999999999999 77777776544
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=1.4e-11 Score=125.98 Aligned_cols=124 Identities=14% Similarity=0.060 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRS----------------RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKL 143 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~----------------~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al 143 (524)
...+..+|.++...|++++|+..|+++++ .+|... .++..+|.+|..+|++++|+.++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45688999999999999999999999998 444444 788899999999999999999999999
Q ss_pred HHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHc
Q 009850 144 YLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQ 222 (524)
Q Consensus 144 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~ 222 (524)
++ +|+++.+++++|.+|..+|++++|+..|+++++++|++.. +..++.++..+
T Consensus 301 ~~--------------------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 301 EI--------------------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp TT--------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred Hh--------------------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 98 8999999999999999999999999999999999999998 89999999999
Q ss_pred CCHHHHHHH
Q 009850 223 GRIGEAKET 231 (524)
Q Consensus 223 G~~~eA~~~ 231 (524)
++++++...
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 988887654
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.31 E-value=2e-12 Score=130.56 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 77 DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 77 p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
+.....+..+|.+++..|++++|+..|++++...|++.. +...|++.++...+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----------~~~~~~~~~~~~~l~---------------- 229 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM----------FQLYGKYQDMALAVK---------------- 229 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH----------HTCCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh----------hhhcccHHHHHHHHH----------------
Confidence 344677899999999999999999999999999987641 112344444433221
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
..+|+++|.+|..+|+|++|+.+|+++++++|++.. |+++|.+|..+|++++|+.+|+++
T Consensus 230 -------------------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 230 -------------------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp -------------------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 127899999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccCCC--------------cCHHHHHHHHHHHHHhCCCCH
Q 009850 236 KPAVADGP--------------RGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 236 ~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~ 264 (524)
+...|... ...+.+...|.+++...|+..
T Consensus 291 l~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 291 QKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp TC-----------------------------------------
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 87766654 223445566777777777654
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.27 E-value=6.8e-12 Score=105.65 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=77.7
Q ss_pred HcCChHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHH
Q 009850 58 VDKDPEKAIPLFWAAINA---GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDD 134 (524)
Q Consensus 58 ~~g~~~~Ai~~~~~al~~---~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~e 134 (524)
..|++++|+.+|++++.. +|++..+++.+|.+|..+|++++|+.+|+++++.+|+++ .++..+|.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--ALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHcCCHHH
Confidence 468999999999999999 689999999999999999999999999999999999997 788899999999999999
Q ss_pred HHHHHHHHHHH
Q 009850 135 QIALLKHKLYL 145 (524)
Q Consensus 135 A~~~~~~al~l 145 (524)
|+..|++++..
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.26 E-value=1.3e-11 Score=109.27 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=71.7
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHH
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNY----------IEAED 197 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~----------~eAi~ 197 (524)
+.+++++|+..+++++++ +|+++.+|+++|.++...+++ ++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l--------------------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------------------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH
Confidence 557899999999999999 999999999999999999875 59999
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHHcC-----------CHHHHHHHHHH
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMKQG-----------RIGEAKETLRR 234 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~~G-----------~~~eA~~~~~~ 234 (524)
.|++|++++|++.. |+++|.+|..+| ++++|+.+|++
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 99999999999999 999999999986 55555555553
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=1.1e-10 Score=101.97 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcc
Q 009850 80 DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGK 155 (524)
Q Consensus 80 ~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~ 155 (524)
..++..+|.++...|++++|+.++++++...+.. ....++..+|.++...|++++|+.++++++.+.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 4678899999999999999999999999886532 1235778899999999999999999999998732100
Q ss_pred cHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---c---HH-HHHHHHHHHHcCCHHHH
Q 009850 156 RTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPD---N---NK-MCNLGICLMKQGRIGEA 228 (524)
Q Consensus 156 ~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~---~---~~-~~~Lg~~~~~~G~~~eA 228 (524)
..+....++.++|.++...|++++|+.++++++.+.+. . .. +.++|.++..+|++++|
T Consensus 84 ---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 84 ---------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 00112568899999999999999999999999987432 1 22 78899999999999999
Q ss_pred HHHHHHhc
Q 009850 229 KETLRRVK 236 (524)
Q Consensus 229 ~~~~~~a~ 236 (524)
+.++++++
T Consensus 149 ~~~~~~a~ 156 (164)
T 3ro3_A 149 MHFAEKHL 156 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999764
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.25 E-value=2.1e-11 Score=107.93 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=87.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQI 136 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~ 136 (524)
-+.+.|++|+..|+++++++|+++++|+++|.++..+++++.+....+ .+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHHHH
Confidence 345677888888888888888888888888888888777765554321 378999
Q ss_pred HHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Q 009850 137 ALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQN-----------NYIEAEDAYRRALSI 205 (524)
Q Consensus 137 ~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~l 205 (524)
..|++++++ +|++..+|+++|.+|..+| ++++|+.+|++|+++
T Consensus 67 ~~le~AL~l--------------------------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 67 TKFEEALLI--------------------------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------------------------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999885 899999999999999
Q ss_pred CCCcHH
Q 009850 206 APDNNK 211 (524)
Q Consensus 206 ~P~~~~ 211 (524)
+|++..
T Consensus 121 ~P~~~~ 126 (158)
T 1zu2_A 121 QPDNTH 126 (158)
T ss_dssp CTTCHH
T ss_pred CCCCHH
Confidence 999876
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.25 E-value=1.1e-11 Score=104.39 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=80.3
Q ss_pred HcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHH
Q 009850 92 QQNRAEEAIEAIKSLRSRC---SDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ 168 (524)
Q Consensus 92 ~~g~~~eAi~~~~~al~~~---p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~ 168 (524)
.+|++++|+.+|+++++.. |++. .++..+|.+|...|++++|+.+|++++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------------- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAVLANGVKQ----------------------- 56 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Confidence 4689999999999999994 5554 78889999999999999999999999998
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 169 VSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 169 ~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+|+++.+++++|.++...|++++|+..|++++...|+++.
T Consensus 57 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 57 ---FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred ---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 8999999999999999999999999999999999999887
No 186
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.24 E-value=7e-10 Score=126.58 Aligned_cols=223 Identities=11% Similarity=0.076 Sum_probs=143.6
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDR----VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDN 120 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~----~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~ 120 (524)
+++---.....|+..|.+.+|+++|++++ ..|. +...-..++.+..+. +..+..++..+.-..+ ..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d--------~~ 1053 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--------AP 1053 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc--------HH
Confidence 44445566778889999999999999999 4444 333333333333333 3333333333322111 12
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 121 ILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 121 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
.+|.++...|.+++|..+|+++-....... ...+....+.++.+.....+.+.+|+.+|.++...|++++|+.+|.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~----VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQ----VLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHH----HHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356777788888888888888642211100 1112223333333334355778899999999999999999999997
Q ss_pred HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCC------------------------------------
Q 009850 201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGP------------------------------------ 243 (524)
Q Consensus 201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~------------------------------------ 243 (524)
++ +++. |..+|.++.+.|++++|+++|..+....++..
T Consensus 1130 KA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1130 KA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDR 1204 (1630)
T ss_pred hc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHH
Confidence 75 6666 88899999999999999999987654443221
Q ss_pred ----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCC
Q 009850 244 ----RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 294 (524)
Q Consensus 244 ----~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~ 294 (524)
+.+++|+..|.++ ..|..+|.++..+|++++|+.+++++....
T Consensus 1205 le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence 4455566666654 467788888888888888888888875443
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.16 E-value=2.2e-11 Score=125.37 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=88.1
Q ss_pred CCCCCCCCCCCccchhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 009850 15 TKSAPSSPAKPLGVSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQN 94 (524)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g 94 (524)
.|+..+......+.++.+.+.|.. ..+...|...+..+...|++++|+.+++.+++..++ +.....++.+|.++|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfik----a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhC
Confidence 555555566666677777777743 235557999999999999999999999998885444 677778888899999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhc-ccHHHHHHHhHHHHHhcCC
Q 009850 95 RAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNG-KRTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 95 ~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~p 173 (524)
+++++.++++. |+. ..+..+|..+...|+|++|..+|.++-.....+.++.. +.++.+....+..
T Consensus 109 ~l~e~e~f~~~-----pn~---~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------ 174 (449)
T 1b89_A 109 RLAELEEFING-----PNN---AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------ 174 (449)
T ss_dssp CHHHHTTTTTC-----C-------------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred CHHHHHHHHcC-----CcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------
Confidence 99888877752 433 46778888888888888888888866322222222222 2333333322221
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHhcccccCCC----------
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGP---------- 243 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~---------- 243 (524)
+++.+|..++.++...|+|+.|..+... +...|++ ...+..+|.+.|++++|+.++++++...+...
T Consensus 175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 175 NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3455666666666666666666555443 1122221 33455666666666666666666655443221
Q ss_pred -----cCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 244 -----RGVDSHLKAYERAQQMLK-----DLESEMMNKGGDRVEQSRLFDAFLGS 287 (524)
Q Consensus 244 -----~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~eAi~~~ 287 (524)
+.+.++++.|...+.+.| +.+..|..+..+|...++++.|+...
T Consensus 252 ~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 252 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 333445555555555555 45556666777777777777766643
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.1e-10 Score=96.14 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHH
Q 009850 175 ATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAY 253 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~ 253 (524)
++.+++.+|.++...|+|++|+..|++++.++|+++. |+++|.++..+|++++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~-------------------- 62 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ-------------------- 62 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH--------------------
Confidence 4678999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 009850 254 ERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSI 290 (524)
Q Consensus 254 ~~al~~~p~~------~~a~~~lg~~~~~~g~~~eAi~~~~~a 290 (524)
+++...|+. ..+++.+|.++...|++++|+..++++
T Consensus 63 -~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 63 -QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp -HHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred -HHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 677777877 788999999999999887776665544
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=8.6e-11 Score=96.75 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
..+..+|.++...|++++|+..|++++++ +|+++.+++++|.++...|++++|+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~ 58 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--------------------------QPQNPVGYSNKAMALIKLGEYTQAI 58 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 56788999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhhCCCc------HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 197 DAYRRALSIAPDN------NK-MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 197 ~~~~~Al~l~P~~------~~-~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
..|++++.++|++ .. ++.+|.++..+|++++|+..++++.
T Consensus 59 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 59 QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999999999998 66 8899999999999888887776543
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.05 E-value=4.5e-10 Score=93.76 Aligned_cols=79 Identities=8% Similarity=-0.059 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 65 AIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLY 144 (524)
Q Consensus 65 Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~ 144 (524)
|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++. ..+..+|.+|...|++++|+..|++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555443 3444445555555555555555555544
Q ss_pred H
Q 009850 145 L 145 (524)
Q Consensus 145 l 145 (524)
+
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.3e-09 Score=90.94 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=72.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 37 HAIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 37 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
.++...|....+|+.+|.++...|++++|+..|++++..+|++..+++.+|.++..+|++++|+..|++++.+.|..
T Consensus 10 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999998854
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.03 E-value=2.6e-09 Score=84.35 Aligned_cols=85 Identities=31% Similarity=0.404 Sum_probs=79.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~ 251 (524)
|.++.+++.+|.++...|++++|+.+|++++..+|++.. ++++|.++...|++++|+.+|+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------ 67 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ------------------ 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHH------------------
Confidence 346789999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009850 252 AYERAQQMLKDLESEMMNKGGDRVEQS 278 (524)
Q Consensus 252 ~~~~al~~~p~~~~a~~~lg~~~~~~g 278 (524)
+++...|+...++.++|.++..+|
T Consensus 68 ---~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 68 ---KALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---HHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHhcCCCCHHHHHHHHHHHHhcC
Confidence 788889999999999999988765
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.03 E-value=8.3e-09 Score=113.12 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=159.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAI-PLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC------ 110 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai-~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~------ 110 (524)
++..+|..++.|+..+......|+.++|. ..|.+++...|.+...|..++.+....|++++|...|++++..-
T Consensus 335 aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 335 AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 55667777788888888777778877776 88888888788777777778888888888888888888777642
Q ss_pred -----CCc---------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcH
Q 009850 111 -----SDQ---------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEAT 176 (524)
Q Consensus 111 -----p~~---------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~ 176 (524)
|.+ ....+|..++.+..+.|..+.|...|.+|++.. .+...
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------------------------~~~~~ 469 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------------------------KLVTP 469 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------------------------GGSCT
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------CCCCh
Confidence 321 112456666666677777788888887776540 11224
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Q 009850 177 RLLGNLGWALMQQN-NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE 254 (524)
Q Consensus 177 ~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~ 254 (524)
.+|...+.+....+ +++.|...|+.+++..|+++. |...+......|+.+.|...|++++...+..
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~------------ 537 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS------------ 537 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH------------
Confidence 56666666666654 489999999999999998888 7778888888899998888888554433210
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCCCCCcc
Q 009850 255 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 301 (524)
Q Consensus 255 ~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~~~~~l 301 (524)
......|......-...|+.+.+...++++.+..|.++.+.
T Consensus 538 ------~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 538 ------HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp ------THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 02334566666677788999999999999999999876643
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=4.6e-09 Score=82.90 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
....++.+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|+.+|++++..+|++. .++..+|.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999987 67788888
Q ss_pred HHHHcC
Q 009850 125 LYKRCG 130 (524)
Q Consensus 125 ~~~~~g 130 (524)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.5e-09 Score=110.32 Aligned_cols=171 Identities=10% Similarity=-0.031 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD------SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSD----QAQE 116 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~------~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~----~~~~ 116 (524)
.++..+|.+|...|++++|+.+|.+++...+... .+...+|.++...|++++|+.++++++...+. ..+.
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 3578999999999999999999999998754432 24557888888999999999999998876542 2335
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
.+...+|.+|...|+|++|+..+++++..... ....+....++..+|.+|...|+|++|.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 195 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKK--------------------LDDKPSLVDVHLLESKVYHKLRNLAKSK 195 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--------------------SSCSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHh--------------------cccchhHHHHHHHHHHHHHHhCcHHHHH
Confidence 78889999999999999999999998876211 0112445789999999999999999999
Q ss_pred HHHHHHHhhCC---CcH----H-HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 197 DAYRRALSIAP---DNN----K-MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 197 ~~~~~Al~l~P---~~~----~-~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
..|++++.+.+ +.. . +..+|..+...|++.+|..+|.++..
T Consensus 196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999998643 221 2 67889999999999999999997643
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=7.4e-09 Score=109.34 Aligned_cols=134 Identities=6% Similarity=-0.026 Sum_probs=109.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
..+..+..+|+|++|+..+++++++. ++++. ...++.+|.+|..+|+|++|+.++++++.+....+.-
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~------ 387 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH------ 387 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC------
Confidence 34556778999999999999999864 34443 4678899999999999999999999999883211110
Q ss_pred HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH----HHHHHHHHHHcCCHHHHH
Q 009850 159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQGRIGEAK 229 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~----~~~Lg~~~~~~G~~~eA~ 229 (524)
..|+-+..+++||.+|..+|+|++|+..|++|+.+ .|+++. ..+++.++.++|.+.+|.
T Consensus 388 ------------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 388 ------------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 03445678999999999999999999999999974 688766 678999999999999999
Q ss_pred HHHHHhc
Q 009850 230 ETLRRVK 236 (524)
Q Consensus 230 ~~~~~a~ 236 (524)
..|.++.
T Consensus 456 ~~~~~~~ 462 (490)
T 3n71_A 456 FMYHKMR 462 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999763
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.95 E-value=6.6e-09 Score=109.73 Aligned_cols=134 Identities=12% Similarity=0.007 Sum_probs=110.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HH
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINA-----GDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ES 117 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~ 117 (524)
.+..+..+|+|++|+.+|++++.+ .|++ ..++.+||.+|..+|+|++|+.++++++.+. |+++. ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567899999999999999985 3444 5668899999999999999999999998863 45543 46
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA---TRLLGNLGWALMQQNNYIE 194 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~---~~a~~~Lg~~~~~~g~~~e 194 (524)
.++.||.+|..+|++++|+.+|++++.+.. ....|++ .....+++.++..++.|++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~---------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILL---------------------VTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999998832 2223444 5677899999999999999
Q ss_pred HHHHHHHHHhhC
Q 009850 195 AEDAYRRALSIA 206 (524)
Q Consensus 195 Ai~~~~~Al~l~ 206 (524)
|...|+++.+..
T Consensus 454 ae~~~~~~~~~~ 465 (490)
T 3n71_A 454 NEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987644
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.95 E-value=2e-09 Score=87.89 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 42 VPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
.|..+.+|+.+|.+++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++.+.|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 466778899999999999999999999999999999999999999999999999999999999999887643
No 199
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.94 E-value=3.7e-08 Score=107.96 Aligned_cols=196 Identities=9% Similarity=-0.046 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAI-EAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi-~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
+.....|++++...|.+++.|+..+..+...|+.++|. ..|++++...|.+. .++..++.+....|++++|..+|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~--~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA--VLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 99999999999886 6788889999999999999999999
Q ss_pred HHHHhhccHhhhcccHHHHHHHhHHHHHhcCC-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q 009850 142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ-----------EATRLLGNLGWALMQQNNYIEAEDAYRRALSI-APDN 209 (524)
Q Consensus 142 al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p-----------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~ 209 (524)
++......... . ....| ....+|..++.+..+.|..+.|...|.+|++. .+..
T Consensus 404 ~l~~l~~~~~~--------------~-~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~ 468 (679)
T 4e6h_A 404 CIDRIHLDLAA--------------L-MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT 468 (679)
T ss_dssp HHHHHHHHHHH--------------H-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHhhh--------------h-hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Confidence 98752110000 0 00013 23568999999999999999999999999987 3333
Q ss_pred HH-HHHHHHHHHHcCC-HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 210 NK-MCNLGICLMKQGR-IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 287 (524)
Q Consensus 210 ~~-~~~Lg~~~~~~G~-~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~ 287 (524)
.. |...|....+.|+ ++.|...|+ ++++..|+.+..+...+......|+.+.|...|
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife---------------------~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLE---------------------LGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHH---------------------HHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34 6666666555544 788888888 777888889988888898888999999999999
Q ss_pred hhcccCCCC
Q 009850 288 SSIWQPQPC 296 (524)
Q Consensus 288 ~~al~~~P~ 296 (524)
++++...|.
T Consensus 528 eral~~~~~ 536 (679)
T 4e6h_A 528 ESSIDKISD 536 (679)
T ss_dssp HHHTTTSSS
T ss_pred HHHHHhcCC
Confidence 999998874
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.89 E-value=4.9e-08 Score=97.92 Aligned_cols=144 Identities=18% Similarity=0.140 Sum_probs=107.0
Q ss_pred HhcCCCChHHH--HHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH----H---HHH-HHHHH
Q 009850 39 IHKVPVGDTPY--VRAKNVQLVDKD---PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRA----E---EAI-EAIKS 105 (524)
Q Consensus 39 ~~~~p~~~~~~--~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~----~---eAi-~~~~~ 105 (524)
....|.+.++| +..|..++..++ +.+|+.+|+++++++|+++.++-.++.+|.....+ . +++ ..++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34566666655 567777777655 47999999999999999999999888887632111 1 111 12222
Q ss_pred --HHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHH
Q 009850 106 --LRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLG 183 (524)
Q Consensus 106 --al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg 183 (524)
++...|.++ .++..++..+...|++++|+..+++++.+ +|. ..+|..+|
T Consensus 267 ~~a~~~~~~~a--~~~~alal~~l~~gd~d~A~~~l~rAl~L--------------------------n~s-~~a~~llG 317 (372)
T 3ly7_A 267 IVTLPELNNLS--IIYQIKAVSALVKGKTDESYQAINTGIDL--------------------------EMS-WLNYVLLG 317 (372)
T ss_dssp HHTCGGGTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------CCC-HHHHHHHH
T ss_pred HHhcccCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------------------------CCC-HHHHHHHH
Confidence 224456666 56677777777789999999999999988 654 66788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 184 WALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 184 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
.++...|++++|++.|.+|+.++|..+.
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999999999998876
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.85 E-value=1.6e-08 Score=82.40 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
+|+++.+++.+|.++...|++++|+.+|+++++++|+++. |+++|.+|..+|++++|+..|++++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999 9999999999999999999999664
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=7e-09 Score=83.70 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDS-ALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~-a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.+.+|..++..|++++|+..|++++..+|++.. +++.+|.++..+|++++|+..|++++.++|++.. ++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~------ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQAR------ 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHHH------
Confidence 467899999999999999999999999999999 9999999999999999999999999999999863 2211
Q ss_pred HcCChHHHHHHHHHHHHH
Q 009850 128 RCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l 145 (524)
+.+.+++..|++++..
T Consensus 75 --~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYN 90 (99)
T ss_dssp --HHHHHHHHHHCCTTHH
T ss_pred --HHHHHHHHHHHHHhcc
Confidence 5667788888877766
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=6.4e-08 Score=84.02 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH----cCChHHH
Q 009850 60 KDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR----CGRLDDQ 135 (524)
Q Consensus 60 g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~----~g~~~eA 135 (524)
+++++|+.+|+++.+.... .+. ||.+|...+..++|+.+|+++.+. .++ ...+.+|.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~--~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSG--NGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCH--HHHHHHHHHHHcCCCCCccHHHH
Confidence 4678888888888887643 333 888888888888888888888876 333 566778888887 7888888
Q ss_pred HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 009850 136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIA 206 (524)
Q Consensus 136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~ 206 (524)
+.+|+++.+. +++.++++||.+|.. .+++++|+.+|+++.+..
T Consensus 81 ~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888755 567788888888888 788888888888888764
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=9.2e-09 Score=82.98 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=49.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 009850 122 LLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATR-LLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 122 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
.|..+...|++++|+..|+++++. +|+++. +++++|.++...|++++|+.+|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--------------------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--------------------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555666666666666666665 566666 66666666666666666666666
Q ss_pred HHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 201 RALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 201 ~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
++++++|++.. +.+ +.+.+++..|+++....
T Consensus 60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccC
Confidence 66666666655 432 34455555555544333
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.78 E-value=1e-07 Score=82.68 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC
Q 009850 94 NRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 94 g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p 173 (524)
+++++|+.+|+++.+.....+ . +|.+|...+.+++|+.+|+++.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~----lg~~y~~g~~~~~A~~~~~~Aa~~---------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C----LSLVSNSQINKQKLFQYLSKACEL---------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H----HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h----HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence 468999999999999886554 2 899998889999999999999865
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHH----cCCHHHHHHHHHHh
Q 009850 174 EATRLLGNLGWALMQ----QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMK----QGRIGEAKETLRRV 235 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~----~G~~~eA~~~~~~a 235 (524)
+++.++++||.+|.. .+++++|+.+|+++.+. .++. +++||.+|.. .+++++|+.+|+++
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 688999999999999 89999999999999986 5666 9999999999 89999999999965
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.66 E-value=9.1e-07 Score=88.75 Aligned_cols=152 Identities=10% Similarity=-0.043 Sum_probs=106.3
Q ss_pred HHHHcCCCcHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH---cC-ChHHHHHHHHH
Q 009850 71 AAINAGDRVDSAL--KDMAIVMKQQNR---AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKR---CG-RLDDQIALLKH 141 (524)
Q Consensus 71 ~al~~~p~~~~a~--~~La~~~~~~g~---~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~---~g-~~~eA~~~~~~ 141 (524)
++....|.+..+| +..|..+...+. +.+|+.+|+++++++|+++... ..++.+|.. .+ ........+.+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~--A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR--AEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHhccCCCchhhHHHHHH
Confidence 3445567766654 455666666544 5899999999999999997433 333333321 11 11111122222
Q ss_pred HHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 009850 142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMK 221 (524)
Q Consensus 142 al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~ 221 (524)
+++. ......+|.++.++..++..+...|++++|+..+++|+.++|+...|..+|.++..
T Consensus 263 a~~a--------------------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 263 EIDN--------------------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHH--------------------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHH--------------------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2211 11223479999999999999999999999999999999999864338899999999
Q ss_pred cCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHH
Q 009850 222 QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 265 (524)
Q Consensus 222 ~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 265 (524)
.|++++|++.|+ +|+.+.|....
T Consensus 323 ~G~~~eA~e~~~---------------------~AlrL~P~~~t 345 (372)
T 3ly7_A 323 KGMNREAADAYL---------------------TAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHH---------------------HHHHHSCSHHH
T ss_pred CCCHHHHHHHHH---------------------HHHhcCCCcCh
Confidence 999999999999 67777776653
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.54 E-value=2e-06 Score=83.02 Aligned_cols=199 Identities=8% Similarity=-0.069 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850 63 EKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHK 142 (524)
Q Consensus 63 ~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~a 142 (524)
--.+..++-.+..+|++...+...|..|.. |..|.- +.=...-|.+.. . .+..++..|..+|.++
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~---Ya~afV--~~~a~~~~~~~~-~---------~~~~~~~RA~~Ly~ra 113 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIM---YANAFV--QTPAQYLPEDEF-E---------AQNEAYSRARKLYLRG 113 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHHT--HHHHHTSCGGGH-H---------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHh--cCchhhcchhhH-h---------hhhhhHHHHHHHHHHH
Confidence 345667777777889888888888777765 221111 110111122210 0 0112344555555555
Q ss_pred HHHhhccHhhhcccHH-HHHH----HhHHHHHhcCCCcHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhC
Q 009850 143 LYLIQQGLAFNGKRTK-TARS----QGKKFQVSVEQEATRLLGNLGWALMQ---Q--N------NYIEAEDAYRRALSIA 206 (524)
Q Consensus 143 l~l~~~~~~~~~~~~~-~a~~----~~~~~~~~~~p~~~~a~~~Lg~~~~~---~--g------~~~eAi~~~~~Al~l~ 206 (524)
......+++....... .... .........+|+++.+++..|.++.. . | ...+|...+++|++++
T Consensus 114 ~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD 193 (301)
T 3u64_A 114 ARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW 193 (301)
T ss_dssp HHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC
Confidence 4443333332211111 1100 00111233378898888888777644 1 3 3678999999999999
Q ss_pred CCc--HH-HHHHHHHHHHc-----CCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-
Q 009850 207 PDN--NK-MCNLGICLMKQ-----GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL-ESEMMNKGGDRVE- 276 (524)
Q Consensus 207 P~~--~~-~~~Lg~~~~~~-----G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~- 276 (524)
|+. .. |..+|..|... |+.++|..+|+ +++++.|+. ...++..|..+..
T Consensus 194 P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe---------------------rAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 194 PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE---------------------HLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH---------------------HHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH---------------------HHHHhCCCCCchHHHHHHHHHHHh
Confidence 994 44 99999999995 89999998888 899999975 9999999999988
Q ss_pred cCCHHHHHHHHhhcccCCCCC
Q 009850 277 QSRLFDAFLGSSSIWQPQPCK 297 (524)
Q Consensus 277 ~g~~~eAi~~~~~al~~~P~~ 297 (524)
+|++++|...++++++.+|..
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGG
T ss_pred cCCHHHHHHHHHHHHcCCCCC
Confidence 499999999999999998884
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.52 E-value=1.1e-06 Score=70.69 Aligned_cols=70 Identities=16% Similarity=0.047 Sum_probs=65.5
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 172 EQEATRLLGNLGWALMQQNN---YIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
+|+++.++..+|.+++..++ .++|...++++++++|+++. ++.+|..+++.|+|++|+.+|++++...|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999987776 79999999999999999999 999999999999999999999988777777
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.46 E-value=1.6e-06 Score=90.03 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 87 AIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 87 a~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
..-+..+|+|++|+..+++++.+. |+++. ...+..+|.+|..+|+|++|+.++++++.+....+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg--------- 364 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP--------- 364 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC---------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC---------
Confidence 344667899999999999999864 44443 567789999999999999999999999988321110
Q ss_pred HHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH----HHHHHHHHHHc
Q 009850 161 RSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQ 222 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~----~~~Lg~~~~~~ 222 (524)
...|+-+..+++||.+|..+|++++|+..|++|+.+ .|+++. +.+|+.+...+
T Consensus 365 ---------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 365 ---------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 013444678999999999999999999999999975 678766 56777777554
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.45 E-value=1.2e-06 Score=70.50 Aligned_cols=73 Identities=16% Similarity=0.022 Sum_probs=67.2
Q ss_pred CCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 42 VPVGDTPYVRAKNVQLVDKD---PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 42 ~p~~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
.|.+++.++.+|.+++..++ .++|..+++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 46788899999999987776 79999999999999999999999999999999999999999999999999854
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.39 E-value=3.6e-06 Score=68.97 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAG-------DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
.+..++.+|..++..|+|..|+.+|+.|++.. +.....+..||.++.++|++++|+.++++++++.|++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45678999999999999999999999999862 45688999999999999999999999999999999986
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.38 E-value=3.2e-06 Score=87.71 Aligned_cols=89 Identities=13% Similarity=-0.033 Sum_probs=76.4
Q ss_pred HHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHH-HHHHHHH
Q 009850 57 LVDKDPEKAIPLFWAAINA-----GDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSR-----CSDQAQ-ESLDNIL 122 (524)
Q Consensus 57 ~~~g~~~~Ai~~~~~al~~-----~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~-----~p~~~~-~~l~~~l 122 (524)
...|+|++|+..|++++.+ .|++ ..++.+||.+|..+|+|++|+.++++++.+ .|+++. ...++.|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4568999999999999985 4555 456889999999999999999999999876 345543 4677899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 009850 123 LDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 123 g~~~~~~g~~~eA~~~~~~al~l 145 (524)
|.+|..+|++++|+.+|++++++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.38 E-value=1.2e-06 Score=91.02 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=82.5
Q ss_pred HHcCCHHHHHHHHHHHHHh-----CCCcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHh
Q 009850 91 KQQNRAEEAIEAIKSLRSR-----CSDQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQG 164 (524)
Q Consensus 91 ~~~g~~~eAi~~~~~al~~-----~p~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~ 164 (524)
...|+|++|+..|++++++ .|+++. ...++.+|.+|..+|+|++|+.++++++.+....+.-
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~------------ 376 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV------------ 376 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS------------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC------------
Confidence 3468999999999999986 345543 4677899999999999999999999999883211100
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHH
Q 009850 165 KKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI-----APDNNK 211 (524)
Q Consensus 165 ~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~ 211 (524)
..|+-+..+++||.+|..+|+|++|+..|++|+.+ .|+++.
T Consensus 377 ------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 377 ------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp ------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred ------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 03444678999999999999999999999999985 577765
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.37 E-value=6e-06 Score=85.63 Aligned_cols=93 Identities=12% Similarity=-0.064 Sum_probs=79.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH-HHH
Q 009850 53 KNVQLVDKDPEKAIPLFWAAINA-----GDRV---DSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-----SDQAQ-ESL 118 (524)
Q Consensus 53 g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-----p~~~~-~~l 118 (524)
...+..+|+|++|+..|++++.+ .|++ ..++.++|.+|..+|+|++|+.++++++.+. |+++. ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34566899999999999999975 3444 4568899999999999999999999998763 45543 467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
++.+|.+|..+|++++|+.+|++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999988
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.31 E-value=4.3e-05 Score=73.76 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Q 009850 132 LDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQ-----NNYIEAEDAYRRALS 204 (524)
Q Consensus 132 ~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~-----g~~~eAi~~~~~Al~ 204 (524)
..+|...+++++++ +|+ +..+|..+|.+|... |+.++|..+|++|++
T Consensus 179 l~~A~a~lerAleL--------------------------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 179 VHAAVMMLERACDL--------------------------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHHH--------------------------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------------------------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 56788888889888 899 577999999999995 999999999999999
Q ss_pred hCCCc-HH-HHHHHHHHHH-cCCHHHHHHHHHHhcccccCC
Q 009850 205 IAPDN-NK-MCNLGICLMK-QGRIGEAKETLRRVKPAVADG 242 (524)
Q Consensus 205 l~P~~-~~-~~~Lg~~~~~-~G~~~eA~~~~~~a~~~~~~~ 242 (524)
++|+. .. ++..|..++. +|++++|..++++++...+..
T Consensus 233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99975 77 8999999988 499999999999886655553
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.27 E-value=5.7e-05 Score=79.93 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=128.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC--CCcHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINA--GDRVDSALKDMAIVMKQQNR---------AEEAIEAIKSLRSRC--SDQAQ 115 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~La~~~~~~g~---------~~eAi~~~~~al~~~--p~~~~ 115 (524)
+..+-..+.+.|++++|+.+|+++... .|+ ...|..|-.++...+. .++|.+.|++..... |+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-- 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-- 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH--
Confidence 455556778999999999999999876 354 5667766666665443 788999999877653 444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEA 195 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eA 195 (524)
..++.+...|.+.|++++|..+|++..+. .+.| +..+|+.+-..|.+.|++++|
T Consensus 106 -~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------------------------g~~P-d~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 106 -ATFTNGARLAVAKDDPEMAFDMVKQMKAF------------------------GIQP-RLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHT------------------------TCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------CCCC-ccceehHHHHHHHHCCCHHHH
Confidence 57788889999999999999999988654 1134 566888899999999999999
Q ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 196 EDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 196 i~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
...|+++.+. .|+...|..+-.+|.+.|+.++|...+++.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 9999999875 466666999999999999999999999975
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.22 E-value=1.2e-05 Score=65.72 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhh
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS-----DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFN 153 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~ 153 (524)
++.-.+.+|..++..|+|..|+.+|+.+++..+ ......++..+|.+|.++|+++.|+.++++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 355678999999999999999999999998752 2233478899999999999999999999999999
Q ss_pred cccHHHHHHHhHHHHHhcCCCcHHHHHHHHH
Q 009850 154 GKRTKTARSQGKKFQVSVEQEATRLLGNLGW 184 (524)
Q Consensus 154 ~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~ 184 (524)
+|++..+..+++.
T Consensus 76 ------------------~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 76 ------------------DPEHQRANGNLKY 88 (104)
T ss_dssp ------------------CTTCHHHHHHHHH
T ss_pred ------------------CCCCHHHHhhHHH
Confidence 8999999888873
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=1.2e-05 Score=70.18 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcC
Q 009850 172 EQEATRLLGNLGWALMQQN---NYIEAEDAYRRALSIA-P-DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 245 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g---~~~eAi~~~~~Al~l~-P-~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~ 245 (524)
++.+.++.+++|+++.+.+ +.++++..++.+++.+ | ++.+ +|+||..+.++|+|++|..+++
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~------------ 95 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR------------ 95 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH------------
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH------------
Confidence 6788999999999999998 7779999999999998 7 3455 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009850 246 VDSHLKAYERAQQMLKDLESEMMNKGG 272 (524)
Q Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~ 272 (524)
++++..|++..+...+-.
T Consensus 96 ---------~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 96 ---------GLLQTEPQNNQAKELERL 113 (152)
T ss_dssp ---------HHHHHCTTCHHHHHHHHH
T ss_pred ---------HHHhcCCCCHHHHHHHHH
Confidence 788888888776655443
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.20 E-value=0.0004 Score=73.29 Aligned_cols=117 Identities=9% Similarity=-0.079 Sum_probs=80.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH-------------------------------
Q 009850 171 VEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGIC------------------------------- 218 (524)
Q Consensus 171 ~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~------------------------------- 218 (524)
..|..+.+|..++..+...|+.++|...|++|+.. |.+.. |...+..
T Consensus 208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence 36889999999999999999999999999999999 98755 4333222
Q ss_pred ---------HHHcCCHHHHHHHHHHhcccccCC-C--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009850 219 ---------LMKQGRIGEAKETLRRVKPAVADG-P--------------RGVDSHLKAYERAQQMLKDLESEMMNKGGDR 274 (524)
Q Consensus 219 ---------~~~~G~~~eA~~~~~~a~~~~~~~-~--------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 274 (524)
..+.|..+.|...|+++ . .+.. . ++.+.|...|++++...|+.+..+...+...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 22345566666667666 2 1111 1 1345566667777776676666666666666
Q ss_pred HHcCCHHHHHHHHhhc
Q 009850 275 VEQSRLFDAFLGSSSI 290 (524)
Q Consensus 275 ~~~g~~~eAi~~~~~a 290 (524)
...|+.+.|...|+++
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6667777777777666
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=2.2e-05 Score=68.56 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 43 PVGDTPYVRAKNVQLVDK---DPEKAIPLFWAAINAG-D-RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 43 p~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~al~~~-p-~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
+...++.|++|.++...+ +.++++.+|+.+++.+ | ++.+++++||..++++|+|++|.++++++++.+|++.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 445566666666666665 4456666666666665 4 4466666666666666666666666666666666664
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.14 E-value=0.00018 Score=75.98 Aligned_cols=52 Identities=8% Similarity=-0.079 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
.......|++++...|..+..|...+..+...|+.++|...|++++.. |.+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 345678999999999999999999999999999999999999999999 9775
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.06 E-value=0.00031 Score=74.28 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHhhccH
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRC--SDQAQESLDNILLDLYKRCGR---------LDDQIALLKHKLYLIQQGL 150 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~l~~~lg~~~~~~g~---------~~eA~~~~~~al~l~~~~~ 150 (524)
.+..+-..+.+.|+.++|++.|+++.... |+. ..++.+..++...+. +++|.++|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~---~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~----- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ---YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD----- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-----
Confidence 35555678889999999999999987753 444 455666666655444 67788888877654
Q ss_pred hhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHcCCHHHH
Q 009850 151 AFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEA 228 (524)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~~~eA 228 (524)
.+.| +..+|+.+-..|.+.|++++|...|+++.+. .|+...|..+-..|.+.|+.++|
T Consensus 100 -------------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 100 -------------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -------------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 1134 5668999999999999999999999999875 46666699999999999999999
Q ss_pred HHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Q 009850 229 KETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 291 (524)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al 291 (524)
...|++.. .....| +...+..+-..+.+.|+.++|...+++..
T Consensus 160 ~~l~~~M~-------------------~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 160 YEVDAHMV-------------------ESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHH-------------------HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 99999642 222334 34467777788888999999888877654
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.78 E-value=0.0009 Score=57.63 Aligned_cols=124 Identities=7% Similarity=0.014 Sum_probs=99.7
Q ss_pred HcCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 74 NAGDRVDSALKDMAIVMKQQNRA------EEAIEAIKSLRSRCSDQ------AQESLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 74 ~~~p~~~~a~~~La~~~~~~g~~------~eAi~~~~~al~~~p~~------~~~~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
-..|++++.|..........|+. ++-++.|++++..-|.. .+..+|..++.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35788999999998888888988 88889999999888743 123455555533 567999999999999
Q ss_pred HHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 009850 142 KLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMK 221 (524)
Q Consensus 142 al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~ 221 (524)
++.+ ....+.+|...|..-.++|+...|...+.+|+.+.|........+..-++
T Consensus 86 a~~~--------------------------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 86 ARAN--------------------------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHHH--------------------------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred HHHH--------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 9887 45668899999999999999999999999999999998777777776666
Q ss_pred cCC
Q 009850 222 QGR 224 (524)
Q Consensus 222 ~G~ 224 (524)
.|.
T Consensus 140 ~~~ 142 (161)
T 4h7y_A 140 LQK 142 (161)
T ss_dssp TTC
T ss_pred cCC
Confidence 664
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.41 E-value=0.0024 Score=53.61 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHcCChHHHHH
Q 009850 62 PEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEE---AIEAIKSLRSRC-SDQAQESLDNILLDLYKRCGRLDDQIA 137 (524)
Q Consensus 62 ~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~e---Ai~~~~~al~~~-p~~~~~~l~~~lg~~~~~~g~~~eA~~ 137 (524)
...+...|.+.+..++...++.+++|+++.+..+..+ ++.+++..+..+ |... -.+.+.+|..++++|+|++|..
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~-Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHhhhHHHHHH
Confidence 4455556666666666666777777777776665555 666666666654 3121 2455566666677777777777
Q ss_pred HHHHHHHH
Q 009850 138 LLKHKLYL 145 (524)
Q Consensus 138 ~~~~al~l 145 (524)
+++.+|+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777766
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.38 E-value=0.0019 Score=54.23 Aligned_cols=78 Identities=9% Similarity=0.031 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCc-HH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcC
Q 009850 172 EQEATRLLGNLGWALMQQNNYIE---AEDAYRRALSIA-PDN-NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 245 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~e---Ai~~~~~Al~l~-P~~-~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~ 245 (524)
++....+.+++|+++.+..+..+ ++..++..+..+ |.. .. ++.||..+.++|+|.+|..+++
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~------------ 98 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR------------ 98 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------------
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH------------
Confidence 56778999999999999988777 999999999876 533 33 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 246 VDSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
..++..|++..+....
T Consensus 99 ---------~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 99 ---------GLLQTEPQNNQAKELE 114 (126)
T ss_dssp ---------HHHHHCTTCHHHHHHH
T ss_pred ---------HHHHhCCCCHHHHHHH
Confidence 6677777766654443
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.0014 Score=57.59 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc--
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAG---DRV------DSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-- 113 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~---p~~------~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-- 113 (524)
+++.-...++..|.|+.|+.....++... |+. ..++..+|.+++..|+|..|...|+++++... ..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36677788899999999999999987763 331 34788999999999999999999999876532 11
Q ss_pred ------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009850 114 ------------------AQESLDNILLDLYKRCGRLDDQIALLKHK 142 (524)
Q Consensus 114 ------------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~a 142 (524)
....+.+.++.||.+.|++++|+..++..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11257788999999999999999987753
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.00 E-value=0.01 Score=50.67 Aligned_cols=88 Identities=8% Similarity=-0.047 Sum_probs=75.0
Q ss_pred chhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 28 VSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDP---EKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAI 103 (524)
Q Consensus 28 ~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~---~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~ 103 (524)
.++.....++.-..-.....+-|+.|.++....+. .+++.+++..++..| ..-++++.||..++++|+|++|..+.
T Consensus 21 eL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 21 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56666666665533467888999999999998765 479999999999888 57889999999999999999999999
Q ss_pred HHHHHhCCCcHH
Q 009850 104 KSLRSRCSDQAQ 115 (524)
Q Consensus 104 ~~al~~~p~~~~ 115 (524)
+.+++..|++.+
T Consensus 101 d~lL~~eP~n~Q 112 (144)
T 1y8m_A 101 DTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHTCCCCHH
T ss_pred HHHHhcCCCcHH
Confidence 999999999964
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.93 E-value=0.0068 Score=53.21 Aligned_cols=65 Identities=9% Similarity=-0.091 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRSRC---SDQ----AQESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~~~---p~~----~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
+++.-...+...|.|+.|+-....++... |+- ..+.+...+|+.++..|+|..|...|+++|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 35556677888999999999998866654 331 235677889999999999999999999999874
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.82 E-value=0.032 Score=47.64 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCH
Q 009850 172 EQEATRLLGNLGWALMQQNNY---IEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 246 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~---~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~ 246 (524)
+.-...+.+++++++.+..+. .+++..++..+...|.... ++.||..+.++|+|.+|..+.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d------------- 101 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD------------- 101 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH-------------
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH-------------
Confidence 345688999999999998865 5799999999999997655 8899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Q 009850 247 DSHLKAYERAQQMLKDLESEMMNK 270 (524)
Q Consensus 247 ~~A~~~~~~al~~~p~~~~a~~~l 270 (524)
..++..|++..+....
T Consensus 102 --------~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 102 --------TLFEHERNNKQVGALK 117 (144)
T ss_dssp --------HHHHTCCCCHHHHHHH
T ss_pred --------HHHhcCCCcHHHHHHH
Confidence 6677777776654443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.71 E-value=0.015 Score=50.03 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=82.0
Q ss_pred hCCCcHHHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHH
Q 009850 109 RCSDQAQESLDNILLDLYKRCGRL------DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNL 182 (524)
Q Consensus 109 ~~p~~~~~~l~~~lg~~~~~~g~~------~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~L 182 (524)
..|.++ ..|..+.......|+. ++-++.|++++...+..- ... .......|...
T Consensus 8 ~~p~~y--d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~-----------------wrrYI~LWIrY 67 (161)
T 4h7y_A 8 MMANNP--EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQ-----------------NESFARIQVRF 67 (161)
T ss_dssp --CCSH--HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTT-----------------CHHHHHHHHHH
T ss_pred eCCCCH--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-ccc-----------------HHHHHHHHHHH
Confidence 456665 6667777777777998 888889999987744331 000 12235577777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhccccc
Q 009850 183 GWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVA 240 (524)
Q Consensus 183 g~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~ 240 (524)
+.. ...++.++|.+.|+.++.+....+. |...|..-.++|+...|...+.+++...+
T Consensus 68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 755 5669999999999999999777766 99999999999999999999995544333
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.68 E-value=0.019 Score=48.44 Aligned_cols=88 Identities=8% Similarity=-0.047 Sum_probs=73.0
Q ss_pred chhhhhhhHHHHhcCCCChHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 28 VSRTRSDSFHAIHKVPVGDTPYVRAKNVQLVDKDP---EKAIPLFWAAINAGD-RVDSALKDMAIVMKQQNRAEEAIEAI 103 (524)
Q Consensus 28 ~l~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~---~~Ai~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~eAi~~~ 103 (524)
.+......++.-..-.....+-|+.|.++....+. .+++.++...++.+| ..-++++.||..++++|+|++|..+.
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56666666655322334667889999999998765 479999999999988 46899999999999999999999999
Q ss_pred HHHHHhCCCcHH
Q 009850 104 KSLRSRCSDQAQ 115 (524)
Q Consensus 104 ~~al~~~p~~~~ 115 (524)
+.+++..|++.+
T Consensus 102 d~lL~~eP~N~Q 113 (134)
T 3o48_A 102 DTLFEHERNNKQ 113 (134)
T ss_dssp HHHHTTCTTCHH
T ss_pred HHHHhhCCCCHH
Confidence 999999999964
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.61 E-value=0.041 Score=46.37 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccc
Q 009850 175 ATRLLGNLGWALMQQNNY---IEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAV 239 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~---~eAi~~~~~Al~l~P~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~ 239 (524)
.+.+.+++|+++.+..+. .+++..++..+..+|.... ++.||..+.++|+|++|..+.+.++...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 478999999999998765 5799999999999986644 8999999999999999999999443333
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.38 Score=52.83 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=72.9
Q ss_pred HHHHHcCChHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCCh
Q 009850 54 NVQLVDKDPEKAIP-LFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRL 132 (524)
Q Consensus 54 ~~~~~~g~~~~Ai~-~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~ 132 (524)
......+++++|.. .+.. -++ ...+..+...+...|.+++|+...+ ++... ..+....|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~-----f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK-----FELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH-----HHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh-----eehhhhcCCH
Confidence 34467888888876 4411 110 1223556666777777777775542 11111 1223456777
Q ss_pred HHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------
Q 009850 133 DDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS-------- 204 (524)
Q Consensus 133 ~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-------- 204 (524)
++|.+..+ ..++...|..+|..+.+.|+++.|+.+|.++-.
T Consensus 669 ~~A~~~~~-------------------------------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 669 TLARDLLT-------------------------------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH 717 (814)
T ss_dssp HHHHHHHT-------------------------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHH-------------------------------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHH
Confidence 77766543 235566778888888888888888888877521
Q ss_pred hCCCcHH-HHHHHHHHHHcCCHHHHHHHHH
Q 009850 205 IAPDNNK-MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 205 l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
....+.. +..++......|++..|...|.
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 1133333 4444444444555555444443
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.24 E-value=0.49 Score=41.44 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC--CC-
Q 009850 38 AIHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS--RC--SD- 112 (524)
Q Consensus 38 ~~~~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~--~~--p~- 112 (524)
+.-..|..++--..++.+++-.|.|..++-++.. -+...+.+.-+.||..+.+|..|+..++..+. .+ |+
T Consensus 25 sa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~ 99 (242)
T 3kae_A 25 AACLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV 99 (242)
T ss_dssp HHHHC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC
T ss_pred HHHHccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 3444566665567789999999999999987754 36678888889999999999999999999983 22 21
Q ss_pred cH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 009850 113 QA-----------QESLDNILLDLYKRCGRLDDQIALLKHKLYLI 146 (524)
Q Consensus 113 ~~-----------~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~ 146 (524)
+. ....+..+|.++...|+.++|+.+|.......
T Consensus 100 d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 100 DARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 11 13466788999999999999999999887664
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.032 Score=61.25 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=86.0
Q ss_pred cCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccHhh-hcccHHHHHHHhHHHHH
Q 009850 93 QNR-AEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRC-GRLDDQIALLKHKLYLIQQGLAF-NGKRTKTARSQGKKFQV 169 (524)
Q Consensus 93 ~g~-~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~~-~~~~~~~a~~~~~~~~~ 169 (524)
.|+ ++.|+..+++....+|.... .+...+..+.... .+--+|+..+.++++........ ..........
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~------- 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL------- 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH-------
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc-------
Confidence 445 68899999999999997641 1111111111122 23346777777666431100000 0000000000
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 170 SVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 170 ~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.|.....+...+..+...|+|+-|+.+.++|+...|.... |+.|+.||..+|+|+.|+-.++.+
T Consensus 333 --~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 --MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred --cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122345666688888999999999999999999999999 999999999999999999999864
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.74 E-value=0.21 Score=47.35 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 55 VQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
..++.|++++|+......++.+|.+......|..+++-.|+++.|...++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456789999999999999999999999999999999999999999999999999999774
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.33 E-value=1 Score=45.45 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc--H--H
Q 009850 46 DTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA-----LKDMAIVMKQ-QNRAEEAIEAIKSLRSRCSDQ--A--Q 115 (524)
Q Consensus 46 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-----~~~La~~~~~-~g~~~eAi~~~~~al~~~p~~--~--~ 115 (524)
..+.+.||..|...|++++-..++......-+..+.+ ...+-..+.. -+..+.=++.+..+++..... . .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999887765543332222 2233333333 244555566666665543322 1 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCC--cHHHHHHHHHHHHHcCCHH
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQE--ATRLLGNLGWALMQQNNYI 193 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~--~~~a~~~Lg~~~~~~g~~~ 193 (524)
..+-..+|.+|...|+|.+|...+.+.++.... .+.. -.+++..-..+|...+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~----------------------~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKK----------------------LDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT----------------------SSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------------cccchhHHHHHHHHHHHHHHhccHH
Confidence 234457899999999999999999988765211 0111 1567788889999999999
Q ss_pred HHHHHHHHHHhhC---CCcHH-----HHHHHHHHH-HcCCHHHHHHHHHHhccc
Q 009850 194 EAEDAYRRALSIA---PDNNK-----MCNLGICLM-KQGRIGEAKETLRRVKPA 238 (524)
Q Consensus 194 eAi~~~~~Al~l~---P~~~~-----~~~Lg~~~~-~~G~~~eA~~~~~~a~~~ 238 (524)
++...|.+|.... +.++. ...-|..++ ..++|..|..+|-++...
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999999997653 12222 456788888 899999999998876433
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.31 Score=53.44 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=85.5
Q ss_pred cCC-hHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCcH--------HHHH
Q 009850 59 DKD-PEKAIPLFWAAINAGDRVDSALKDMAIVMK--QQ-NRAEEAIEAIKSLRSR--------CSDQA--------QESL 118 (524)
Q Consensus 59 ~g~-~~~Ai~~~~~al~~~p~~~~a~~~La~~~~--~~-g~~~eAi~~~~~al~~--------~p~~~--------~~~l 118 (524)
.|+ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+. ...+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 455 58899999999999997643 333332222 22 2344677777776642 22221 1235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 009850 119 DNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDA 198 (524)
Q Consensus 119 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~ 198 (524)
....+..+...|+++-|+.+-++++.. .|.....|+.|+.+|..+|+|+.|+-.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~--------------------------aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTEL--------------------------ALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc--------------------------CchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 566677788999999999999999999 899999999999999999999999977
Q ss_pred HHHH
Q 009850 199 YRRA 202 (524)
Q Consensus 199 ~~~A 202 (524)
++.+
T Consensus 394 LNSc 397 (754)
T 4gns_B 394 INSM 397 (754)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 6644
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.6 Score=41.40 Aligned_cols=55 Identities=9% Similarity=-0.124 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 44 VGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSL 106 (524)
Q Consensus 44 ~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~a 106 (524)
.+++.-|.++ +..|+++.|.+..+.. ++...|..||......|+++-|..+|+++
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444455555 6788999998887765 66788899999999999999888888875
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.90 E-value=1.2 Score=45.04 Aligned_cols=174 Identities=17% Similarity=0.120 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQ---ESLDNILLDLYKR-CGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~---~~l~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
.+.+.||.+|...|++++-.+++......-+.-+. ..+-..+.+.+.. -+..+.-++....+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-------- 91 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-------- 91 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--------
Confidence 56789999999999999999988876554443221 1222233333322 24445555555555544110
Q ss_pred HHHHHHHhHHHHHhcCCCc-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH-----HHHHHHHHHHcCCHH
Q 009850 157 TKTARSQGKKFQVSVEQEA-TR--LLGNLGWALMQQNNYIEAEDAYRRALSIAP--DNNK-----MCNLGICLMKQGRIG 226 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~-~~--a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~-----~~~Lg~~~~~~G~~~ 226 (524)
+... .. .-..+|..|+..|+|.+|...+.+.+.--. ++.. +..-...|..+|++.
T Consensus 92 ---------------~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 92 ---------------EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 1011 11 334789999999999999999999887421 1211 556678899999999
Q ss_pred HHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHhhccc
Q 009850 227 EAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-LESEMMNKGGDRV-EQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 227 eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~-~~g~~~eAi~~~~~al~ 292 (524)
++...|.++.... .++-..|. .+.....-|..+. ..++|.+|...|-.++.
T Consensus 157 k~k~~l~~a~~~~---------------~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 157 KARAALTSARTTA---------------NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHH---------------HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh---------------ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 9999999763211 01100111 1233455588888 89999999998877753
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.81 E-value=0.43 Score=52.45 Aligned_cols=139 Identities=14% Similarity=-0.017 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
....+...+...|.+++|+...+ ++...+ ......|++++|.+..+. .++. ..|..+|..+.
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~-----~~~~--~~W~~la~~al 692 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTD-----ESAE--MKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTT-----CCCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHh-----hCcH--hHHHHHHHHHH
Confidence 34566667777888888876552 222223 345678999999887543 2343 67788899999
Q ss_pred HcCChHHHHHHHHHH-----HHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 128 RCGRLDDQIALLKHK-----LYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 128 ~~g~~~eA~~~~~~a-----l~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
+.|+++.|+.+|.++ +.. +....++...+..++......|++..|...|.+.
T Consensus 693 ~~~~~~~A~~~y~~~~d~~~l~~-----------------------l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHDLESLFL-----------------------LHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp HTTCHHHHHHHHHHHTCHHHHHH-----------------------HHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHccChhhhHH-----------------------HHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 999999999998875 111 0001334445556666666666666666665442
Q ss_pred HhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 203 LSIAPDNNKMCNLGICLMKQGRIGEAKETLRR 234 (524)
Q Consensus 203 l~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~ 234 (524)
= .+-....+|.+.+++++|+..-++
T Consensus 750 g-------~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 750 G-------DIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp T-------CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-------CHHHHHHHHHHcCChHHHHHHHHH
Confidence 1 033344456677777777776664
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.76 E-value=2 Score=37.68 Aligned_cols=213 Identities=14% Similarity=-0.005 Sum_probs=119.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHH
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQ 135 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA 135 (524)
.++-.+|+.++-+-.-. -|..++....++..++-.|.|..|+-++.+ + +.. ...+.-..+|....+|..|
T Consensus 12 s~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l--NT~--Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 12 SIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L--NTC--TSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT---C--CBH--HHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh---c--chH--HHHHHHHHHHHHHHHHHHH
Confidence 35667777776443332 344446677888899999999988876643 1 222 2223345678889999999
Q ss_pred HHHHHHHHHHhhccHhhhcccHHHHHHHhHHHH---HhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 136 IALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQ---VSVEQEATR-LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 136 ~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~---~~~~p~~~~-a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
+.+++..+.-.-. . .-.-... .-.+|.+-+ .+..+|.++.+.|+-++|+.+|.......|-.+.
T Consensus 82 ~~~le~il~~kvd-----~-------d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 82 IKSLESILEGKVE-----R-------DPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHTTCSB-----C-------CCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhcccc-----c-------CcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999888743000 0 0000000 011455544 4556788888889999999999988888876655
Q ss_pred HHHHHHHH-----------HHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCC
Q 009850 212 MCNLGICL-----------MKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM-NKGGDRVEQSR 279 (524)
Q Consensus 212 ~~~Lg~~~-----------~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~-~lg~~~~~~g~ 279 (524)
.-|+-.-- ...|+-.--.+.+......+..- .-...++-....|....... +.+..|..+|.
T Consensus 150 vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~------s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~ 223 (242)
T 3kae_A 150 VENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL------SPSLVKKYMEHVPGIGSYFISNAARRYFNLGM 223 (242)
T ss_dssp HHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC------CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc------cHHHHHHHHHhCCCchhHHHHHHHHHHHhccc
Confidence 22221100 00000000001111000000000 00233455566777776543 44678999999
Q ss_pred HHHHHHHHhhcccCCCC
Q 009850 280 LFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 280 ~~eAi~~~~~al~~~P~ 296 (524)
.++...+|....+.+|-
T Consensus 224 ~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 224 NDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred chhHHHHHHHHHhcCCC
Confidence 99999999999888885
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.64 E-value=0.41 Score=48.38 Aligned_cols=93 Identities=17% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC--------Cc--H------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGD--------RV--D------------SALKDMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p--------~~--~------------~a~~~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
..|......|+.+.|...+++|+.+-. .. . .+...++..+...|++++|+..+.+++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455567999999999999998631 11 1 1234567888899999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
.+|-+- .++..+..+|...|+..+|+..|+++-+.
T Consensus 200 ~~P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 200 EHPYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HSTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999775 57778888899999999999999988665
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.54 E-value=1.1 Score=45.17 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=75.4
Q ss_pred HHcCChHHHHHHHHHHHHHhhccHhhhc----ccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009850 127 KRCGRLDDQIALLKHKLYLIQQGLAFNG----KRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRA 202 (524)
Q Consensus 127 ~~~g~~~eA~~~~~~al~l~~~~~~~~~----~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 202 (524)
...|+.+.|...+++++.++. |..+.. .+.......... ....+...++..+...|++.+|+..+..+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~r-G~~L~~~~~~~w~~~~r~~l~~-------~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWR-GPVLDDLRDFQFVEPFATALVE-------DKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCC-SSTTGGGTTSTTHHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 346888999999999988862 221111 111111111111 12346677888999999999999999999
Q ss_pred HhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 009850 203 LSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK 236 (524)
Q Consensus 203 l~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~ 236 (524)
+..+|-+.. |..+-.++...|+..+|+..|+++.
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988 8899999999999999999999863
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.92 E-value=1.6 Score=38.73 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTK 158 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~ 158 (524)
+++..+.++ ...|+++.|.+..+.. ++. ..|..+|......|+++-|+.+|.++-..
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------- 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDS--ITWERLIQEALAQGNASLAEMIYQTQHSF------------- 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCH-------------
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHhCCH-------------
Confidence 445555554 5789999999887665 333 67889999999999999999999876433
Q ss_pred HHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 159 TARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 159 ~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
..+..+|...|+-+.-...-+.+....- +.....+++.+|++++++..|.+.
T Consensus 64 ---------------------~~L~~Ly~~tg~~e~L~kla~iA~~~g~----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 ---------------------DKLSFLYLVTGDVNKLSKMQNIAQTRED----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp ---------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHCcc----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 2344445556665544444343332111 333445667788888888888753
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.90 E-value=0.47 Score=53.41 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAE 196 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi 196 (524)
..++.+.+.|++.|+.++|..+|....+.... ...| +..+|+.|-..|.+.|++++|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k---------------------G~~P-dvvTYNtLI~Glck~G~~~eA~ 185 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK---------------------RKLL-TLDMYNAVMLGWARQGAFKELV 185 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH---------------------HTTC-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc---------------------CCCC-CHhHHHHHHHHHHhCCCHHHHH
Confidence 34556666666667776666666554322000 0022 3446666666666666666666
Q ss_pred HHHHHHHhh--CCCcHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 009850 197 DAYRRALSI--APDNNKMCNLGICLMKQGR-IGEAKETLRR 234 (524)
Q Consensus 197 ~~~~~Al~l--~P~~~~~~~Lg~~~~~~G~-~~eA~~~~~~ 234 (524)
+.|+++.+. .|+...|..+-.++.+.|+ .++|...|++
T Consensus 186 ~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~E 226 (1134)
T 3spa_A 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226 (1134)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666553 3554446666666666665 3455555554
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.84 E-value=0.62 Score=52.48 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhccc
Q 009850 82 ALKDMAIVMKQQNRAEEAIEAIKSLRS-----RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKR 156 (524)
Q Consensus 82 a~~~La~~~~~~g~~~eAi~~~~~al~-----~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~ 156 (524)
.+..+-..|++.|+.++|...|..... ..|+- ..|+.+...|.+.|++++|.++|++..+.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv---vTYNtLI~Glck~G~~~eA~~Lf~eM~~~----------- 194 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL---DMYNAVMLGWARQGAFKELVYVLFMVKDA----------- 194 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------
Confidence 466777888888888888888866432 34444 56777778888888888888888877654
Q ss_pred HHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 009850 157 TKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNN-YIEAEDAYRRALSIA 206 (524)
Q Consensus 157 ~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~ 206 (524)
++.| +..+|+.+-.++.+.|+ .++|...|+++.+..
T Consensus 195 -------------G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 195 -------------GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp -------------TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred -------------CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 1234 45567777777788787 467888888887754
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.37 E-value=0.44 Score=49.70 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+...+|++.+....++.|..+|.+|..+ .|++...++.||.+....|+.-+|+-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------------------------~P~~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------------------------VPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--------------------------CCCCCchHHHHHHHHhcccccHHHHH
Confidence 4456677777777777777777777776 67777777777777777777777777
Q ss_pred HHHHHHhhCCCcHH-HHHHHHHHHH
Q 009850 198 AYRRALSIAPDNNK-MCNLGICLMK 221 (524)
Q Consensus 198 ~~~~Al~l~P~~~~-~~~Lg~~~~~ 221 (524)
+|-+++......+. +.|+...+.+
T Consensus 208 ~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 208 YYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHH
Confidence 77777765544554 6666666543
No 249
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.15 Score=53.04 Aligned_cols=135 Identities=15% Similarity=0.117 Sum_probs=61.6
Q ss_pred HHHHHcCChHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHH----
Q 009850 54 NVQLVDKDPEKAIPLFWAAIN-----------AGDRVDSALKDMAIVMKQQNRAEEAIE----------AIKSLRS---- 108 (524)
Q Consensus 54 ~~~~~~g~~~~Ai~~~~~al~-----------~~p~~~~a~~~La~~~~~~g~~~eAi~----------~~~~al~---- 108 (524)
..++..+++++|..+-...+. +++=.+..|+.++.++...|+...... .+-.+++
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345667889998888776651 134456678888888888887665321 2222222
Q ss_pred hCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHH
Q 009850 109 RCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQ 188 (524)
Q Consensus 109 ~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~ 188 (524)
.........+++.+...|...+.|++|..+..++.-. .... .+......++.+|.++..
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~~~-------------------sn~q~~rY~YY~GRI~a~ 282 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HTDV-------------------SSSLEARYFFYLSKINAI 282 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TTTS-------------------CHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cccC-------------------CHHHHHHHHHHHHHHHHH
Confidence 2223456688899999999999999999999887411 0000 001125677889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q 009850 189 QNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 189 ~g~~~eAi~~~~~Al~l~P~~ 209 (524)
+++|.+|..++..|+...|.+
T Consensus 283 q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 283 QLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp TTCHHHHHHHHHHHTSSCSCS
T ss_pred hccHHHHHHHHHHHHHhCCcc
Confidence 999999999999999988754
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.04 E-value=4.7 Score=41.27 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 009850 115 QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIE 194 (524)
Q Consensus 115 ~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~e 194 (524)
+..+...|+.+|...|++.+|...+.....-..... . ...-.+++.....++...++|..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~---~-----------------~~~kve~~l~q~rl~l~~~d~~~ 195 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM---E-----------------MSEKIQFILEQMELSILKGDYSQ 195 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS---C-----------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc---c-----------------HHHHHHHHHHHHHHHHHCCCHHH
Confidence 346667889999999999999998887653210000 0 00114577788889999999999
Q ss_pred HHHHHHHHHh---hCCCcHH-----HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 009850 195 AEDAYRRALS---IAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKP 237 (524)
Q Consensus 195 Ai~~~~~Al~---l~P~~~~-----~~~Lg~~~~~~G~~~eA~~~~~~a~~ 237 (524)
|...++++.. -.+..+. +...|..+...++|.+|-.+|..+..
T Consensus 196 a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 196 ATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999998742 2333333 45688899999999999999998743
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.96 E-value=1.9 Score=49.90 Aligned_cols=147 Identities=12% Similarity=-0.016 Sum_probs=90.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C------------------
Q 009850 51 RAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRC-S------------------ 111 (524)
Q Consensus 51 ~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~-p------------------ 111 (524)
.+...+...|.++-|.. .+...|.++...+.+|.++...|++++|..+|+++..-- .
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455666777766544 334567777778889999999999999999998752211 0
Q ss_pred --CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCc----HHHHHHHHHH
Q 009850 112 --DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEA----TRLLGNLGWA 185 (524)
Q Consensus 112 --~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~----~~a~~~Lg~~ 185 (524)
.+.....+.....++.+.|.++.++++.+.|++.. .+++ ...|.++=..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-------------------------~~~~~~~~~~l~~~iFk~ 947 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-------------------------ETDDEDLSIAITHETLKT 947 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-------------------------CSCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------cCCChhhHHHHHHHHHHH
Confidence 00112344555667777788888888777777651 1222 2356677777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHH
Q 009850 186 LMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGE 227 (524)
Q Consensus 186 ~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~e 227 (524)
+...|+|++|...+...=... .-.. +..+-..+++.|+...
T Consensus 948 ~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 948 ACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCChhh
Confidence 888888888877765432211 1122 4445555566666544
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.69 E-value=0.59 Score=48.74 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Q 009850 178 LLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERA 256 (524)
Q Consensus 178 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~a 256 (524)
.+..||.+......+..|..+|.+|+.+.|++.. ++.||.+....|+.-+|+-+|-+++.....-+...+.....|++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999 999999999999999999999987543333333333344445544
Q ss_pred H
Q 009850 257 Q 257 (524)
Q Consensus 257 l 257 (524)
+
T Consensus 234 ~ 234 (497)
T 1ya0_A 234 L 234 (497)
T ss_dssp T
T ss_pred H
Confidence 4
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.31 Score=49.99 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccH
Q 009850 79 VDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA-QESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRT 157 (524)
Q Consensus 79 ~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~-~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~ 157 (524)
...++..+|..|...|++++|.+.|.++........ ...++.....++...+++..+...+.++-.+...+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 345688899999999999999999999887765331 23566667778888999999999999886652110
Q ss_pred HHHHHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009850 158 KTARSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSIAP 207 (524)
Q Consensus 158 ~~a~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 207 (524)
.+|.. .......|.++...++|.+|...|-.++.-..
T Consensus 202 -------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 202 -------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp -------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred -------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 01111 23445567778888999999999998877543
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.94 E-value=2.1 Score=40.54 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=55.5
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009850 126 YKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI 205 (524)
Q Consensus 126 ~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 205 (524)
+.+.|.+++|+......++. +|.++.....|-.+++-.|+|+.|...++.+.++
T Consensus 7 ll~~g~L~~al~~~~~~VR~--------------------------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--------------------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--------------------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34679999999999998888 9999999999999999999999999999999999
Q ss_pred CCCcHH
Q 009850 206 APDNNK 211 (524)
Q Consensus 206 ~P~~~~ 211 (524)
+|+...
T Consensus 61 ~p~~~~ 66 (273)
T 1zbp_A 61 FPEYLP 66 (273)
T ss_dssp CGGGHH
T ss_pred CchhhH
Confidence 999865
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.94 E-value=4.3 Score=41.56 Aligned_cols=98 Identities=6% Similarity=-0.025 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCc--HHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINA--GDR----VDSALKDMAIVMKQQNRAEEAIEAIKSLRS---RCSDQ--AQE 116 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~--~p~----~~~a~~~La~~~~~~g~~~eAi~~~~~al~---~~p~~--~~~ 116 (524)
....|+.++...|++.+|...+.....- ... -.+.+.....+|...+++..|...+.++.. ..+.. ...
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3467899999999999999999988642 111 235667778899999999999999998642 12222 234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
.++...|.++...++|.+|-.+|..+...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66778899999999999999999988765
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.57 E-value=0.78 Score=46.94 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc-HHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINA---GDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS---DQ-AQESLD 119 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~---~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p---~~-~~~~l~ 119 (524)
.++..+|..++..|++++|.++|.++... ...-.+.+.....++...+++..+..++.++..... +. ....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35889999999999999999999998875 334567888888999999999999999999866532 21 223455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
...|.++...++|.+|...|..++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 56677788899999999999887654
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.15 E-value=6.7 Score=45.30 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=78.1
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----------------------CCCcHHHHHHHHHHHHHcCCHH
Q 009850 41 KVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINA-----------------------GDRVDSALKDMAIVMKQQNRAE 97 (524)
Q Consensus 41 ~~p~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~-----------------------~p~~~~a~~~La~~~~~~g~~~ 97 (524)
.++..+...|.+|.+++..|++++|..+|+++-.- ....+..|..+..++.+.|.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 45667777799999999999999999999887321 1112355777888999999999
Q ss_pred HHHHHHHHHHHhCCC-cH--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009850 98 EAIEAIKSLRSRCSD-QA--QESLDNILLDLYKRCGRLDDQIALLKH 141 (524)
Q Consensus 98 eAi~~~~~al~~~p~-~~--~~~l~~~lg~~~~~~g~~~eA~~~~~~ 141 (524)
.+++..+.|++..+. +. ...+|..+-..+...|+|++|...+..
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 999999999987653 32 234677777888899999999777643
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.14 E-value=30 Score=36.87 Aligned_cols=124 Identities=10% Similarity=0.013 Sum_probs=59.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCcHHH-HH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGDRVDSA-LK---DMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYK 127 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-~~---~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~ 127 (524)
.+...+...+.+.|...+........-+... +. .+|.-+...+...++...+.+......++.. .....+. ..
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~r~-Al 296 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL--IERRVRM-AL 296 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH--HHHHHHH-HH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH--HHHHHHH-HH
Confidence 3444455556666666666554332222221 11 1222222223244555555554443333321 1112222 23
Q ss_pred HcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 128 RCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 128 ~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+.|+++.|..+|.+.-.. ........+-+|.++...|+.++|..+|+++..
T Consensus 297 r~~d~~~a~~~~~~l~~~--------------------------~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPME--------------------------AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTT--------------------------GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccc--------------------------ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 446676666666543211 112355566667777777777777777776654
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.70 E-value=20 Score=34.60 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009850 173 QEATRLLGNLGWALMQQNNYIEAEDAYR 200 (524)
Q Consensus 173 p~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 200 (524)
-+++..+..+|..|.+.|++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3678999999999999999999999885
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.63 E-value=40 Score=35.87 Aligned_cols=52 Identities=13% Similarity=-0.027 Sum_probs=38.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009850 56 QLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCS 111 (524)
Q Consensus 56 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p 111 (524)
+...+++..-+..|.. .|.+....+..+.+....|+-.+|....+.+.....
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 3456777776665543 378888888888889999998888887777766543
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.59 E-value=9.8 Score=42.60 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC---C---cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 009850 48 PYVRAKNVQLVDKDPEKAIPLFWAAINAGD---R---VD----SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQES 117 (524)
Q Consensus 48 ~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p---~---~~----~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~ 117 (524)
+.+.+|.++...+ .+++.++...+..+. . +. .+-..||.++...++ +++.+.+...+..+.......
T Consensus 415 AllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~ 491 (963)
T 4ady_A 415 SLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEA 491 (963)
T ss_dssp HHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHH
Confidence 4555666554444 578888888776532 1 11 345577777776665 567777777776554333334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 009850 118 LDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAED 197 (524)
Q Consensus 118 l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~ 197 (524)
+...+|.++...|+-+-....+..+..- ..+...-...+|..+...|+.+.+..
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~--------------------------~~e~vrR~aalgLGll~~g~~e~~~~ 545 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQET--------------------------QHGNITRGLAVGLALINYGRQELADD 545 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHC--------------------------SCHHHHHHHHHHHHHHTTTCGGGGHH
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhcc--------------------------CcHHHHHHHHHHHHhhhCCChHHHHH
Confidence 5667788877777765444444433321 11222222334444445566665555
Q ss_pred HHHHHHhhCCCcHH----HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 198 AYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 198 ~~~~Al~l~P~~~~----~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
..+.... ..+... -+.+|.+|...|+...-...++.+
T Consensus 546 li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 546 LITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp HHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 5554443 322222 234666777777754433355543
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.84 E-value=5.4 Score=41.47 Aligned_cols=193 Identities=9% Similarity=-0.001 Sum_probs=80.1
Q ss_pred HHHcCCHHHHHHHHHHHHH---hCC------CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 90 MKQQNRAEEAIEAIKSLRS---RCS------DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 90 ~~~~g~~~eAi~~~~~al~---~~p------~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
+...+++++|.++-..++. +.. +.....+|+.++.++...|+..+..........+.+.-+.
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~--------- 216 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK--------- 216 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHH---------
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH---------
Confidence 4456789998888776552 111 1112356666666676777766543332222221100000
Q ss_pred HHHhHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHH----HHHHHHHHHHcCCHHHHHHHHH
Q 009850 161 RSQGKKFQVSVEQEA-TRLLGNLGWALMQQNNYIEAEDAYRRALSIAP--DNNK----MCNLGICLMKQGRIGEAKETLR 233 (524)
Q Consensus 161 ~~~~~~~~~~~~p~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~----~~~Lg~~~~~~G~~~eA~~~~~ 233 (524)
..+...+..|+.. +.+++.+-..|...+.|++|.....++.-... .+.. ++.+|.++.-+++|.+|..++.
T Consensus 217 --~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 217 --FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp --HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 0000001113322 56788888999999999999999999853221 1222 5678999999999999999999
Q ss_pred HhcccccCCC---cCHHHHHHHH---HHHHHhCCC--------CH---HHHHHHHHHHHHcCCH---HHHHHHHhhcccC
Q 009850 234 RVKPAVADGP---RGVDSHLKAY---ERAQQMLKD--------LE---SEMMNKGGDRVEQSRL---FDAFLGSSSIWQP 293 (524)
Q Consensus 234 ~a~~~~~~~~---~~~~~A~~~~---~~al~~~p~--------~~---~a~~~lg~~~~~~g~~---~eAi~~~~~al~~ 293 (524)
.|....|... +....+.+.+ +-.+...|. .. ..|+.+..++ +.|+. ..++..++..|..
T Consensus 295 ~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~ 373 (523)
T 4b4t_S 295 AAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLK 373 (523)
T ss_dssp HHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHH
T ss_pred HHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceecc
Confidence 9987665543 3333333222 111222332 22 2255566654 44664 4455555555555
Q ss_pred C
Q 009850 294 Q 294 (524)
Q Consensus 294 ~ 294 (524)
+
T Consensus 374 D 374 (523)
T 4b4t_S 374 D 374 (523)
T ss_dssp T
T ss_pred C
Confidence 4
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.48 E-value=37 Score=30.43 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI--APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 248 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~ 248 (524)
||....+|..++..+ ..+...++...|..+... .-..+. |...|..+...|++.+|...|+..+.........+..
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~ 154 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLR 154 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 455567777777755 234577889998888764 455666 8889999999999999999999876655544444444
Q ss_pred HHHHH
Q 009850 249 HLKAY 253 (524)
Q Consensus 249 A~~~~ 253 (524)
+...|
T Consensus 155 ~~~~F 159 (202)
T 3esl_A 155 SLSNY 159 (202)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.37 E-value=78 Score=30.78 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHH-HHHHcCCHHHH
Q 009850 117 SLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGW-ALMQQNNYIEA 195 (524)
Q Consensus 117 ~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~-~~~~~g~~~eA 195 (524)
.++..+|..|.+.+++.+|..+|-.. . ... .+....+.-.......|...+.+...+. .|...++...|
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~ilg--~--~~s------~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A 206 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHLVLG--T--KES------PEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAA 206 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTS--C--TTH------HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhc--C--Cch------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHH
Confidence 67888999999999999998887311 0 000 0011111111112224566677766664 46778999999
Q ss_pred HHHHHHHHh----hCC------------------CcHH--HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHH
Q 009850 196 EDAYRRALS----IAP------------------DNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 251 (524)
Q Consensus 196 i~~~~~Al~----l~P------------------~~~~--~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~ 251 (524)
...+..-++ .+| ..+. +..+..+-++.+..+ .|.. ..+
T Consensus 207 ~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~----lF~~--------------L~~ 268 (336)
T 3lpz_A 207 NTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPD----LFRQ--------------LKS 268 (336)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHH----HHHH--------------HHH
T ss_pred HHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHH----HHHH--------------HHH
Confidence 886655443 223 3444 444455556666543 3332 234
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 009850 252 AYERAQQMLK-DLESEMMNKGGDRVEQ 277 (524)
Q Consensus 252 ~~~~al~~~p-~~~~a~~~lg~~~~~~ 277 (524)
.|+..+..+| .+...+..+|..|+..
T Consensus 269 ~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 269 KYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 4667777777 7888888888888753
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.56 E-value=86 Score=30.50 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---hccHhhhcccHHH
Q 009850 87 AIVMKQQNRAEEAIEAIKSLR----SRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLI---QQGLAFNGKRTKT 159 (524)
Q Consensus 87 a~~~~~~g~~~eAi~~~~~al----~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~---~~~~~~~~~~~~~ 159 (524)
+.=|.+.++|++|++++.... +..-...-..+...+.++|...+-.-. .....+.+++. +....-.......
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~~~~p~r~~fi~~ 120 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQPGEPVRKRFVKE 120 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 344666778888877665532 222112223455555566665543111 12333333332 1111111111222
Q ss_pred HHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 009850 160 ARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAY 199 (524)
Q Consensus 160 a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~ 199 (524)
+..+-.... ...-+++..+..+|..|.+.+++.+|..+|
T Consensus 121 ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 121 MIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 222222110 113467899999999999999999999988
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=67.06 E-value=0.00026 Score=72.47 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 45 GDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 45 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
.++.|..+|..++..|+..+||+.|-++ +++..+...-.+..+.|.|++=+.+++.+-+.-.+. .+-..|..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~---~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES---YVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST---TTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc---ccHHHHHH
Confidence 4556999999999999999999998665 444456667777778899999999998876654332 22344455
Q ss_pred HHHHcCChHHHHHHHHHHHH--Hh-hccHhhhcccHHHHHHHhHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009850 125 LYKRCGRLDDQIALLKHKLY--LI-QQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRR 201 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al~--l~-~~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 201 (524)
+|.+.++..+-.+++...-. +. --..++..+.++++..+... -+ -|..|+.++.++|+|.+|++.-++
T Consensus 125 ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~-----is----N~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 125 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-----VS----NFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGG-----SC----CCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHh-----Cc----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677776653332210000 00 00000111111111111100 11 234567777777777777776443
Q ss_pred HHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhc---------ccccCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009850 202 ALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK---------PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG 271 (524)
Q Consensus 202 Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~---------~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (524)
| +++. |-....++...+++.-|.-+--.+. -...+..|.+++.+..++.++.+..-.......||
T Consensus 196 A-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELa 270 (624)
T 3lvg_A 196 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 270 (624)
T ss_dssp C-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHH
T ss_pred c-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3 3344 8777788888888887766655431 11222337778888888899988887777888888
Q ss_pred HHHHHcCCHHHHHHHHhhccc
Q 009850 272 GDRVEQSRLFDAFLGSSSIWQ 292 (524)
Q Consensus 272 ~~~~~~g~~~eAi~~~~~al~ 292 (524)
.+|.+ =+.++-+++.+.-|.
T Consensus 271 ILYsK-Y~PeKlmEHlklf~s 290 (624)
T 3lvg_A 271 ILYSK-FKPQKMREHLELFWS 290 (624)
T ss_dssp HHHHS-SCTTHHHHHHTTSSS
T ss_pred HHHHh-cCHHHHHHHHHHHHH
Confidence 66543 355555666555554
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.01 E-value=34 Score=38.58 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=73.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCC--CcCHHHHHHHHHHHHH
Q 009850 182 LGWALMQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADG--PRGVDSHLKAYERAQQ 258 (524)
Q Consensus 182 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~--~~~~~~A~~~~~~al~ 258 (524)
+...+...|.++-|. +.+..-|.++. -+.+|.+|...|++++|..+|++|-...... ....+.....+-...+
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 555666778877543 45677888887 7789999999999999999999984322111 1111111111111111
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCCC
Q 009850 259 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 296 (524)
Q Consensus 259 ~~p~~~~a~~~lg~~~~~~g~~~eAi~~~~~al~~~P~ 296 (524)
........|.+...++...+-++-++...+.|++.-..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~ 929 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 929 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCS
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Confidence 11223347788899999999999999999988865433
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.62 E-value=88 Score=35.15 Aligned_cols=93 Identities=11% Similarity=-0.066 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC----------------
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRS-RCS---------------- 111 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~-~~p---------------- 111 (524)
...+...+...|.++-|. ..+..-|.++..-+.+|.+|...|++++|..+|+++-. +..
T Consensus 813 ~~~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 813 VTELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC
Confidence 344666777788877554 35566788888889999999999999999999998542 111
Q ss_pred ----CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 112 ----DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 112 ----~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
......+|.....++...+-++-++.+.+.|++.
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1111235556666677777777777777777754
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.05 E-value=62 Score=28.98 Aligned_cols=84 Identities=6% Similarity=0.035 Sum_probs=58.1
Q ss_pred HHHHHHHHhCC------CcHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHhcCC
Q 009850 101 EAIKSLRSRCS------DQAQ-ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQ 173 (524)
Q Consensus 101 ~~~~~al~~~p------~~~~-~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~~~p 173 (524)
..+++++...- +++. ..+|..++..+ ..+...++...|...... .+--
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~------------------------~IG~ 112 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK------------------------GIGT 112 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH------------------------TSST
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC------------------------CCcH
Confidence 46777766433 2332 34555555442 234477888888876654 2245
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 174 EATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 174 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
..+..|...|..+...|++.+|..+|+..++..-.-
T Consensus 113 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 113 KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 567788999999999999999999999999966443
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.02 E-value=39 Score=29.21 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALS--IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 248 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~ 248 (524)
||....+|..++... +.+...|..+.. +.-..+. |...|..+...|++.+|...|+..+.........+..
T Consensus 62 D~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp CHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 444456666666543 336667776665 3455566 7888999999999999999999876665554444544
Q ss_pred HHHHHH
Q 009850 249 HLKAYE 254 (524)
Q Consensus 249 A~~~~~ 254 (524)
+...|.
T Consensus 136 ~~~~F~ 141 (164)
T 2wvi_A 136 QHRQFQ 141 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.90 E-value=33 Score=29.27 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSI--APDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
||....+|..++... .++.+.|..+... .-..+. |...|..+...|++.+|...|+..+.....
T Consensus 67 D~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 67 DPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp CHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344455555555432 3477777777653 445566 778888899999999999999876554433
No 272
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=53.80 E-value=31 Score=26.02 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=22.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCC
Q 009850 216 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 263 (524)
Q Consensus 216 g~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~ 263 (524)
|.-.-+.|++++|+.+|.. +++.|..++...|+.
T Consensus 18 Ave~D~~g~y~eAl~lY~~--------------aie~l~~~lk~e~d~ 51 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKK--------------AIEVLSQIIVLYPES 51 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHHHCTTC
T ss_pred HHHHHHhccHHHHHHHHHH--------------HHHHHHHHHHHCCCH
Confidence 3334578888888888885 566666776665543
No 273
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.23 E-value=38 Score=25.63 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCC
Q 009850 215 LGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 262 (524)
Q Consensus 215 Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~ 262 (524)
.|.-.-+.|++++|+.+|.. +++.|..++...|+
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~--------------aie~l~~alk~e~d 58 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKK--------------AIEVLAQLVSLYRD 58 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHHHSTT
T ss_pred HHHHHHHhccHHHHHHHHHH--------------HHHHHHHHHHHCCC
Confidence 33444577788888888874 45566666665543
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.86 E-value=32 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
.+|..+...|++++|..+|-+|+..+|..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 44555555555555555555555555543
No 275
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.32 E-value=50 Score=27.88 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 89 VMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 89 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
.+..+|+.++-.+.+...+...+-++ .+...++.+|.+.|+..+|.+++.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~--~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSA--SILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCCh--HHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44455666665555555444444444 45556666666666666666666666543
No 276
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.10 E-value=50 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCHHHHH
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 268 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 268 (524)
+..++..+.+.|+|++||.+.++ |..++..|..+. +...++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k--------------Aa~yL~eAmklt-qs~qa~~ 59 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK--------------ATTYLSEAMKLT-ESEQAHL 59 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHTTC-CCHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH--------------HHHHHHHHHHhh-ccHHHHH
Confidence 55688889999999999999986 455566677666 4444443
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.19 E-value=36 Score=31.01 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHhcccccC
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALS--IAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD 241 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~ 241 (524)
||....+|..++.. .+++...|..+.. +.-.... |...|..+...|++.+|...|+..+.....
T Consensus 116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44455666666653 2466677777765 3455566 888999999999999999999976554443
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.82 E-value=50 Score=36.96 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 009850 47 TPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVD--SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLD 124 (524)
Q Consensus 47 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~--~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~ 124 (524)
.+...||.+++..++ +++...+...+..+.... .+-+.+|.++...|+-+-...++..+.....+.. .-...+|.
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v--rR~aalgL 532 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI--TRGLAVGL 532 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH--HHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 366788888877775 567777777776443222 3455788888888887766666666665433332 22233343
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 009850 125 LYKRCGRLDDQIALLKHKL 143 (524)
Q Consensus 125 ~~~~~g~~~eA~~~~~~al 143 (524)
.+...|+.+.+....+...
T Consensus 533 Gll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 533 ALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHH
T ss_pred HhhhCCChHHHHHHHHHHH
Confidence 4446677776666655443
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.84 E-value=52 Score=24.22 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCcHHH
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSA 82 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~~a 82 (524)
..+|..+...|++++|+.+|-+|+...|.-.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 567888888888888888888888877664443
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.87 E-value=38 Score=26.15 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+..+...+..+...|+|++||++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44667788999999999999999888764
No 281
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.55 E-value=41 Score=34.29 Aligned_cols=97 Identities=14% Similarity=-0.025 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHH
Q 009850 95 RAEEAIEAIKSLRSRCSDQ--------------AQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTA 160 (524)
Q Consensus 95 ~~~eAi~~~~~al~~~p~~--------------~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a 160 (524)
..+++...+.++....-.+ ....+.+.+..+|++.|+..-+...++..-.. ..-..+.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~------- 212 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFN------- 212 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGG-------
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChh-------
Confidence 4667777888877763211 11334556778899999999998888644322 1000000
Q ss_pred HHHhHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q 009850 161 RSQGKKFQVSVEQ--EATRLLGNLGWALMQQNNYIEAEDAYRRALSI-APDN 209 (524)
Q Consensus 161 ~~~~~~~~~~~~p--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~ 209 (524)
..| +-...++.+|.+++..++|.+|..++..|+.. .|..
T Consensus 213 ----------~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 213 ----------EYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp ----------GSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------hCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 012 22567899999999999999999999999998 6654
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.72 E-value=2.5e+02 Score=26.83 Aligned_cols=79 Identities=8% Similarity=-0.124 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccHhhhcccHHHHHHHhHHHHHh---cCCCcHHHHHHHHH-HHHHcCC
Q 009850 116 ESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVS---VEQEATRLLGNLGW-ALMQQNN 191 (524)
Q Consensus 116 ~~l~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~~~~~~~~~a~~~~~~~~~~---~~p~~~~a~~~Lg~-~~~~~g~ 191 (524)
..++..+|..|.+.|++.+|..+|-..-.-... .+ ......+ ... ..|...+.+...+. .|...|+
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~--~~----a~~l~~w----~~~~~~~~~~e~dlf~~RaVL~yL~l~n 203 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMI--KY----VDLLWDW----LCQVDDIEDSTVAEFFSRLVFNYLFISN 203 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHH--HH----HHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHH--HH----HHHHHHH----HHhcCCCCcchHHHHHHHHHHHHHHhcC
Confidence 378889999999999999999988522100000 00 0001111 111 23444566655554 4567899
Q ss_pred HHHHHHHHHHHHh
Q 009850 192 YIEAEDAYRRALS 204 (524)
Q Consensus 192 ~~eAi~~~~~Al~ 204 (524)
...|...|..-.+
T Consensus 204 ~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 204 ISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888886653
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=40.37 E-value=27 Score=26.13 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAIN 74 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~ 74 (524)
...+|+-+...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677777788888888888777765
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.21 E-value=1.5e+02 Score=25.48 Aligned_cols=60 Identities=7% Similarity=-0.039 Sum_probs=37.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc--HH----HHHH-HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 86 MAIVMKQQNRAEEAIEAIKSLRSRCSDQ--AQ----ESLD-NILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 86 La~~~~~~g~~~eAi~~~~~al~~~p~~--~~----~~l~-~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
-|..++..|+|-+|-+.++.+....+.. .. ..+. ...|..+.+.|+...|...+.+++..
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555577777777777666655432 11 1222 33344556788999999999988875
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=38.97 E-value=45 Score=35.84 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHcCC
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGR 131 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~~~~~l~~~lg~~~~~~g~ 131 (524)
+.....|...+..|+|.-|.++...++..+|++. .+...++++|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~--~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR--AARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555554 344445555555543
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.49 E-value=86 Score=27.04 Aligned_cols=38 Identities=5% Similarity=0.133 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
--..+..|...|..+...|++.+|..+|+.+++....-
T Consensus 92 G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 92 GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34567788999999999999999999999999976443
No 287
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=36.21 E-value=1.2e+02 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=23.3
Q ss_pred HHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850 218 CLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 218 ~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 264 (524)
-.-..|++++|+.+|.. |++.|..++...+...
T Consensus 27 e~D~ag~y~eAl~lY~~--------------Aie~l~~alk~e~~~~ 59 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQH--------------AVQYFLHVVKYEAQGD 59 (117)
T ss_dssp HHHHHTCHHHHHHHHHH--------------HHHHHHHHHHTSCCCH
T ss_pred HHHHccCHHHHHHHHHH--------------HHHHHHHHHHhccCCH
Confidence 34467888888888885 5667777777764444
No 288
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.16 E-value=1.1e+02 Score=23.22 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850 212 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 212 ~~~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 264 (524)
+...|.-.-..|++++|+.+|.. +++.|-.++...|+..
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~--------------Aie~ll~alk~e~d~~ 57 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQE--------------GIDLLLQVLKGTKDNT 57 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHHHhhCCCHH
Confidence 44555566788999999999995 5667777777766543
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.09 E-value=44 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 009850 50 VRAKNVQLVDKDPEKAIPLFWAAINAGDR 78 (524)
Q Consensus 50 ~~lg~~~~~~g~~~~Ai~~~~~al~~~p~ 78 (524)
..+|..++..|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34556666666666666666665555443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.92 E-value=1.1e+02 Score=25.95 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK 211 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 211 (524)
--..+..|...|..+...|++.+|..+|+..++....-..
T Consensus 97 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 97 GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3456778899999999999999999999999997644433
No 291
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.81 E-value=67 Score=28.66 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHcCCHH
Q 009850 176 TRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNK------MCNLGICLMKQGRIG 226 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~------~~~Lg~~~~~~G~~~ 226 (524)
...++.+|.+++..++|.+|..++.+|+...|.... +..+--+-+-+|+..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 457889999999999999999999999999886533 222333445567743
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.54 E-value=1.6e+02 Score=25.27 Aligned_cols=61 Identities=10% Similarity=-0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCc---HHHHHHH------HHHHHHcCCHHHHHHHHHHHHHh
Q 009850 49 YVRAKNVQLVDKDPEKAIPLFWAAINAGDRV---DSALKDM------AIVMKQQNRAEEAIEAIKSLRSR 109 (524)
Q Consensus 49 ~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~L------a~~~~~~g~~~eAi~~~~~al~~ 109 (524)
-+..|..++..|+|-+|-+.++.+-...+.. ...|..| |..+.+.|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677888899999999999999998776543 2223322 33556789999999999998774
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.69 E-value=1.3e+02 Score=27.39 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 009850 172 EQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDN 209 (524)
Q Consensus 172 ~p~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 209 (524)
--..+..|...|..+...|+|.+|..+|+..++..-.-
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34567788999999999999999999999999976443
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.60 E-value=74 Score=28.39 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 009850 81 SALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQ 113 (524)
Q Consensus 81 ~a~~~La~~~~~~g~~~eAi~~~~~al~~~p~~ 113 (524)
..++.+|.++...++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 456667777777777777777777777776644
No 295
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.84 E-value=1.7e+02 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 99 AIEAIKSLRSRCS-----DQAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 99 Ai~~~~~al~~~p-----~~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
++.+|.+++.... .+. .-+..+|..+++.+++.+|+..+..+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~Hv--YPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHI--YPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCc--cchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 5555555554322 122 22344566777788888888888777654
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.47 E-value=77 Score=24.03 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=16.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHH
Q 009850 124 DLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 124 ~~~~~~g~~~eA~~~~~~al~l 145 (524)
.-.-..|+|++|+.+|..+++.
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3345678888888888888876
No 297
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.37 E-value=1.8e+02 Score=28.47 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhC-----CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 176 TRLLGNLGWALMQQNN--YIEAEDAYRRALSIA-----PDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 176 ~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~-----P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
+.++.+||.+-...-- -..++..|.+|+... ..+.- |..+|-++.+.+++.+|+..+..+
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 4455555544332211 122777777777643 22233 778899999999999999999987
No 298
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.48 E-value=76 Score=24.68 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 009850 84 KDMAIVMKQQNRAEEAIEAIKSLRSRCSDQA 114 (524)
Q Consensus 84 ~~La~~~~~~g~~~eAi~~~~~al~~~p~~~ 114 (524)
..+|..+...|+++.|+.+|-+|+..+|...
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3678888899999999999988888887653
No 299
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.44 E-value=4.3e+02 Score=25.88 Aligned_cols=91 Identities=11% Similarity=-0.040 Sum_probs=63.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--CC
Q 009850 55 VQLVDKDPEKAIPLFWAAINAG-----------------DRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR---C--SD 112 (524)
Q Consensus 55 ~~~~~g~~~~Ai~~~~~al~~~-----------------p~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~---~--p~ 112 (524)
+.....+.++|++.+.+....- .........++..|...|+.++|..+++++-.. . .+
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4456778999999998764321 112334557788999999999999999987543 1 11
Q ss_pred -cHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 113 -QAQESLDNILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 113 -~~~~~l~~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
..+..++...+..|...+++..+...+-..+..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 234567777788888999998877666655543
No 300
>2igr_A Anticancer peptide CB1A; cecropin, antimicrobial peptide, ploycat peptide, cecropin fingerprint sequence, de novo protein; NMR {Hyalophora cecropia}
Probab=26.69 E-value=27 Score=20.47 Aligned_cols=15 Identities=53% Similarity=0.753 Sum_probs=11.3
Q ss_pred HHHHHhhhhhhhhhh
Q 009850 503 EKKIDKRLKVFQDIT 517 (524)
Q Consensus 503 ~~~~~~~~~~~~~~~ 517 (524)
-+||+|.-|||..|.
T Consensus 5 fkkiekkwkvfkkie 19 (34)
T 2igr_A 5 FKKIEKKWKVFKKIE 19 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367888888887764
No 301
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.53 E-value=74 Score=32.38 Aligned_cols=62 Identities=6% Similarity=-0.072 Sum_probs=41.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc
Q 009850 52 AKNVQLVDKDPEKAIPLFWAAINAGD----------RVDSALKDMAIVMKQQNRAEEAIEAIKSLRSR-CSDQ 113 (524)
Q Consensus 52 lg~~~~~~g~~~~Ai~~~~~al~~~p----------~~~~a~~~La~~~~~~g~~~eAi~~~~~al~~-~p~~ 113 (524)
+=.+|++.|+..-+...++..-...+ +-...++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 44667778887777777755433322 12345677788888888888888888877777 6543
No 302
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.66 E-value=2.2e+02 Score=28.49 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhC-----CCcHH-HHHHHHHHHHcCCHHHHHHHHHHh
Q 009850 175 ATRLLGNLGWALMQQNNY--IEAEDAYRRALSIA-----PDNNK-MCNLGICLMKQGRIGEAKETLRRV 235 (524)
Q Consensus 175 ~~~a~~~Lg~~~~~~g~~--~eAi~~~~~Al~l~-----P~~~~-~~~Lg~~~~~~G~~~eA~~~~~~a 235 (524)
.+.++.+||.+-...--. ..++..|.+|+... ..+.- |..+|-++++.+++.+|+..+..+
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHH
Confidence 355555555554432211 13677777777642 22233 778899999999999999999886
No 303
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.18 E-value=81 Score=23.74 Aligned_cols=12 Identities=25% Similarity=0.099 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 009850 63 EKAIPLFWAAIN 74 (524)
Q Consensus 63 ~~Ai~~~~~al~ 74 (524)
++|+.+..+|++
T Consensus 17 ~~Ai~lv~~Ave 28 (83)
T 2w2u_A 17 EMARKYAINAVK 28 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.01 E-value=65 Score=24.04 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 009850 85 DMAIVMKQQNRAEEAIEAIKSLRS 108 (524)
Q Consensus 85 ~La~~~~~~g~~~eAi~~~~~al~ 108 (524)
.+|+-|...|+|+.|+.+|+.+++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 455556666666666666665544
No 305
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.91 E-value=2.7e+02 Score=27.88 Aligned_cols=26 Identities=8% Similarity=0.012 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
..+|-.+.+.+++.+|+..+..+-..
T Consensus 307 tYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 307 MYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecchHHHHhhhHHHHHHHhhhhhhh
Confidence 34455666667777777777766544
No 306
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.16 E-value=86 Score=23.52 Aligned_cols=12 Identities=17% Similarity=0.049 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 009850 63 EKAIPLFWAAIN 74 (524)
Q Consensus 63 ~~Ai~~~~~al~ 74 (524)
++|+.+..+|++
T Consensus 9 ~~Ai~lv~~Ave 20 (83)
T 2v6y_A 9 DMARKYAILAVK 20 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356666666544
No 307
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.89 E-value=2.4e+02 Score=21.47 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHHHhCCCCH
Q 009850 214 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 264 (524)
Q Consensus 214 ~Lg~~~~~~G~~~eA~~~~~~a~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 264 (524)
..|.-.-..|++++|+.+|.. +++.|..++...++..
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~--------------Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQE--------------GIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH--------------HHHHHHHHHHHCCCHH
Confidence 344445678999999999995 6677778877776544
No 308
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.27 E-value=2.9e+02 Score=27.66 Aligned_cols=26 Identities=8% Similarity=0.012 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 009850 120 NILLDLYKRCGRLDDQIALLKHKLYL 145 (524)
Q Consensus 120 ~~lg~~~~~~g~~~eA~~~~~~al~l 145 (524)
..+|-.|++.+++.+|+..+..+-..
T Consensus 322 tYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 322 MYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecchhhhhcchHHHHHHHHHHHHHH
Confidence 34455667777777777777766544
No 309
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.20 E-value=1.5e+02 Score=22.13 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009850 179 LGNLGWALMQQNNYIEAEDAYRRALS 204 (524)
Q Consensus 179 ~~~Lg~~~~~~g~~~eAi~~~~~Al~ 204 (524)
+...|.-.-..|+|++|+.+|..+++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556677888888888887776
Done!